@ARTICLE{TreeBASE2Ref16572,
author = {Frank N. Martin and Paul W. Tooley},
title = {Phylogenetic relationships among Phytophthora species inferred from sequence analysis of the mitochondrially-encoded cytochrome oxidase I and II gene.},
year = {2003},
keywords = {},
doi = {},
url = {},
pmid = {},
journal = {Mycologia},
volume = {95},
number = {2},
pages = {269--284},
abstract = {The phylogenetic relationships of 51 isolates representing 27 species of Phytophthora were assessed by sequence alignment of 568 bp of the mitochondrially-encoded cytochrome oxidase II gene. A total of 1299 bp of the cytochrome oxidase I gene also was examined for a subset of 13 species. The cox II gene trees constructed by a heuristic search based on maximum parsimony for a bootstrap 50% majority-rule consensus tree revealed 18 species grouping into 7 clades and 9 species unaffiliated with a specific clade. The phylogenetic relationships among species observed on cox II gene trees did not exhibit consistent similarities in groupings for morphology, pathogenicity, host range or temperature optima. The topology of the cox I gene trees constructed by a heuristic search based on maximum parsimony for a bootstrap 50% majority-rule consensus tree for 13 species of Phytophthora revealed 10 species grouping into 3 clades and 3 species unaffiliated with a specific clade. The groupings in general agreed with what was observed in the cox II tree. Species relationships observed for the cox II gene tree were in general agreement with those based on ITS regions, with some notable exceptions. Analysis of combined data sets of ITS and cox II generated a tree that did not differ substantially from analysis of ITS data alone, however, the results of a partition homogeneity test suggest that combining data sets may not be valid.}
}
Trees for Study 1039
Citation title:
"Phylogenetic relationships among Phytophthora species inferred from sequence analysis of the mitochondrially-encoded cytochrome oxidase I and II gene.".
This study was previously identified under the legacy study ID S774
(Status: Published).
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Angiosperm phylogeny, RAxML bestTree.rbcL ML10 |
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MLT atp1 ML10 |
Angiosperm phylogeny, RAxML bestTree.atp1 ML10 |
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Tr31207
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MLT 18S ML10 |
Angiosperm phylogeny, RAxML bestTree.18S ML10 |
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MLT 26S ML10 |
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MLT rps4 ML10 |
Angiosperm phylogeny, RAxML bestTree.rps4 ML10 |
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MLT matK ML10 |
Angiosperm phylogeny, RAxML bestTree.matK ML10 |
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Tr31210
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MLT atpB ML10 |
Angiosperm phylogeny, RAxML bestTree.atpB ML10 |
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MLT CP ML10 |
Angiosperm phylogeny, RAxML bestTree.ONLY CP ML10 |
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Tr31204
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MajRule 18S 26S BS100 |
Angiosperm phylogeny, MajRule 18S 26S BS100 MRCON |
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Tr31221
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MP 500BS con |
Angiosperm phylogeny, parsimony ratchet 500BS consensus |
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Tr31213
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MLT nad5 ML10 |
Angiosperm phylogeny, RAxML bestTree.nad5 ML10 |
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Tr31201
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MLT 18S 26S ML10 |
Angiosperm phylogeny, RAxML bestTree.18S 26S ML10 |
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Tr31198
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MLT MT ML10 |
Angiosperm phylogeny, RAxML bestTree.WITH MT ML10 |
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Tr31218
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MLT rps3 ML10 |
Angiosperm phylogeny, RAxML bestTree.rps3 ML10 |
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Tr31205
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MajRule CP BS100 |
Angiosperm phylogeny, RAxML MajorityRuleConsensusTree.ONLY CP BS100 MRCON |
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Tr31203
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MLT MT ML10 |
Angiosperm phylogeny, RAxML bestTree.ONLY MT ML10 |
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Tr31206
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MajRule MT BS100 |
Angiosperm phylogeny, RAxML MajorityRuleConsensusTree.ONLY MT BS100 MRCON |
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Tr31215
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MLT psbBTNH ML10 |
Angiosperm phylogeny, RAxML bestTree.psbBTNH ML10 |
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Tr31214
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MLT ndhF ML10 |
Angiosperm phylogeny, RAxML bestTree.ndhF ML10 |
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Tr31217
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MLT rpoC2 ML10 |
Angiosperm phylogeny, RAxML bestTree.rpoC2 ML10 |
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Tr31212
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MLT matR ML10 |
Angiosperm phylogeny, RAxML bestTree.matR ML10 |
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