#NEXUS [written Fri Jan 27 15:39:35 SBT 2012 by Mesquite version 2.75 (build 566) at NOUCLTUC0032/10.41.129.27] BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=31; TAXLABELS 'AM049958 Halimeda incrassata (Bah)' 'FJ624534 Halimeda incrassata (Car) *' 'AM049963 Halimeda simulans (Jam)' 'IRD 5311 morphotype A (NC)' 'AM049962 Halimeda monile (Pan)' 'CP08 908 Halimeda borneensis (FP) ' 'CP08 1157 Halimeda borneensis (FP)' 'CP08 886 Halimeda borneensis (FP)' 'AM049955 Halimeda borneensis (FP)' 'CP08 1081 Halimeda borneensis (FP)' 'IRD 5309 morphotype B - Halimeda borneensis (NC)' 'IRD 5310 morphotype B - Halimeda borneensis (NC)' 'AM049961 Halimeda melanesica (Phi)' 'AM049956 Halimeda cylindracea (Ye)' 'IRD 5326 morphotype A - Halimeda cylindracea (NC)' 'IRD 5325 morphotype A - Halimeda cylindracea (NC)' 'AM049959 Halimeda kanaloana (H) *' 'IRD 5324 morphotype P - Halimeda kanaloana (NC)' 'IRD 5323 morphotype P - Halimeda kanaloana (NC) ' 'AM049957 Halimeda heteromorpha (FP) *' 'CP08 518 Halimeda heteromorpha (FP)' 'FJ624535 Halimeda heteromorpha (Phi)' 'IRD 5346 morphotype O - Halimeda heteromorpha (FP)' 'IRD 5304 morphotype C - Halimeda macroloba (NC)' 'IRD 5308 morphotype C - Halimeda macroloba (NC)' 'AM049960 Halimeda macroloba (Tanz)' 'IRD 5322 morphotype C - Halimeda macroloba (NC)' 'IRD 5321 morphotype C - Halimeda macroloba (NC)' 'IRD 5330 morphotype O - Halimeda heteromorpha (NC)' 'IRD 5810 morphotype T - Halimeda melanesica (NC)*' AM049964_Halimeda_micronesica ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=821; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'AM049958 H. incrassata (Bah)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGCGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCAATTGTTGTTTTTCTTAATAAAATCGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGTGATGATATTCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCCTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATCAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCACCTCGAAGTACAGATAAAGATTTTCTTATGGCTGTTGAAAATGTTGTTTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGGGTTGAAAGAGGTCAAATAAAAGTTGGACAGAATGTTGAAATAGTAGGCTTGAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAGGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTATTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTAAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAGTTTTATGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATTCGTATGGTTATGCC 'FJ624534 H. incrassata (Car) *' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGCGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCAATTGTTGTTTTTCTTAATAAAATCGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGTGATGATATTCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCCTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATCAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCACCTCGAAGTACAGATAAAGATTTTCTTATGGCTGTTGAAAATGTTGTTTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGGGTTGAAAGAGGTCAAATAAAAGTTGGACAGAATGTTGAAATAGTAGGCTTGAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAGGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTATTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTAAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAGTTTTATGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATTCGTATGGTTATGCC 'AM049963 H. simulans (Jam)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGCGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCAATTGTTGTTTTTCTTAATAAAATCGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGTGATGATATTCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATCAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCACCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTTTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGAGGTCAAATAAAAGTTGGACAGAATGTTGAAATAGTAGGCTTGAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAGGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTATTCAAAAAAATGAAATTCA?CGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTAAAAAAAGATGAAGGTGGACGTCATACTTCCTTTGTAGCAGGTTATCGACCGCAGTTTTATGTGCGAACTACAGATGTCACTGGAAAAATTGATTCTTTTCAAGGAGACGACGATAGTGAAATTCGTATGGTTATGCC 'IRD 5311 morphotype A (NC)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGCGCAGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCAATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGTGATGATATTCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCCTTAACTACAAACCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATATTATTGATGAAGAAATACCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTTTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGAGGTCAAATAAAAGTTGGACAGAATGTTGAAATAGTAGGCTTAAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAATTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTATTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATAACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTAAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGTAGGTTATCGACCGCAGTTTTATGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGATGACGATAGTGAAATTCGTATGGTTATGCC 'AM049962 H. monile (Pan)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTAGTTTCAGGCGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTACCTGCAATTGTTGTTTTTCTTAATAAAATCGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGTGATGATATTCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCCTTAACTACAAATCCGATGATCCAAAGAGGAGAAAATGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCACCTCGAAATACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATAACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGAGGTCAAATAAAAGTTGGACAGAATGTTGAAATAGTAGGCCTGAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAGAGTGTTGCTGGTGACAATGTTGGTGTTTTATTACGTGGTATTCAAAAAAATGAAATCCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTAAAAAAAGATGAAGGCGGCCGTCATACTTCTTTTGTAGCAGGTTATCGACCGCAGTTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATTCGTATGGTTATGCC 'CP08 908 H. borneensis (FP) ' GGAGCAGCGCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGATGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGAGATGATATTCCTATCATAAGTGGATCAGCTTTAGCTGCTGTCGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTTATGGCCGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTGGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCTATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGGCGTCATACTTCTTTTGTAGCAGGTTATCGACCGCAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'CP08 1157 H. borneensis (FP)' GGAGCAGCGCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCcTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGATGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGAGATGATATTCCTATCATAAGTGGATCAGCTTTAGCTGCTGTCGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTTATGGCCGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTGGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCTATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGGCGTCATACTTCTTTTGTAGCAGGTTATCGACCGCAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'CP08 886 H. borneensis (FP)' GGAGCAGCGCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCcTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCcTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGATGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGAGATGATATTCCTATCATAAGTGGATCAGCTTTAGCTGCTGTCGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTTATGGCCGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTGGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCTATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGGCGTCATACTTCTTTTGTAGCAGGTTATCGACCGCAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'AM049955 H. borneensis (FP)' GGAGCAGCGCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGATGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGAGATGATATTCCTATCATAAGTGGATCAGCTTTAGCTGCTGTCGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTTATGGCCGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTGGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCTATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGGCGTCATACTTCTTTTGTAGCAGGTTATCGACCGCAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'CP08 1081 H. borneensis (FP)' GGAGCAGCGCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGATGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGAGATGATATTCCTATCATAAGTGGATCAGCTTTAGCTGCTGTCGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTTATGGCCGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTGGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCTATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGGCGTCATACTTCTTTTGTAGCAGGTTATCGACCGCAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5309 morphotype B - H. borneensis (NC)' GGAGCAGCGCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGATGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGAGATGATATTCCTATCATAAGTGGATCAGCTTTAGCTGCTGTCGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTTATGGCCGTTGAAAATGTTGTTTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATATTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTGGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCTATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGGCGTCATACTTCTTTTGTAGCAGGTTATCGACCGCAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5310 morphotype B - H. borneensis (NC)' ????????????????????????????????????????????????????????????????????????????TTTTATTAGCACAACAAGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGATGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGAGATGATATTCCTATCATAAGTGGATCAGCTTTAGCTGCTGTCGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTTATGGCCGTTGAAAATGTTGTTTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATATTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTGGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCTATTACACCTCATACACGTTTCAAAGCTCaAGTATATATTTTGAAAAAAGATGAAGGTGGGCGTCATACTTCTTTTGTAGCAGGTTATCGACCGCAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGA??????????????????????????? 'AM049961 H. melanesica (Phi)' GGAGCAGCACAGATGGACGGAGCCATTTTAGTAGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGATGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGTGATGATATTCCTATCATAAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGACGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCCGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGAGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGCTCTATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGGCGTCATACTTCTTTTGTAGCAGGTTATCGACCGCAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'AM049956 H. cylindracea (Ye)' GGAGCAGCTCAAATGGATGGAGCTATTTTAGTGGTTTCAGGTGCTGATGGGCCTATGCCACAAACAAAGGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATCGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGTGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCCTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCCGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGAGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTAATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTATCCAAAAAGATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTACCGACCGCAATTTTATGTACGTACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATTCGTATGGTTATGCC 'IRD 5326 morphotype A - H. cylindracea (NC)' GGAGCAGCTCAAATGGATGGAGCTATTTTAGTGGTTTCAGGTGCTGATGGGCcTATGCCACAAACAAAGGAACATATTTTATTAGCACAACAAGTTGGAGTGCcTGCTATTGTTGTTTTTCTTAATAAAATCGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGTGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCCTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCCGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGAGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTAATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTATCCAAAAAGATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTACCGACCGCAATTTTATGTACGTACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATTCGTATGGTTATGCC 'IRD 5325 morphotype A - H. cylindracea (NC)' GGAGCAGCTCAAATGGATGGAGCTATTTTAGTGGTTTCAGGTGCTGATGGGCCTATGCCACAAACAAAGGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATCGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGTGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCCTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCCGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGAGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTAATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTATCCAAAAAGATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTCAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTACCGACCGCAATTTTATGTACGTACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATTCGTATGGTTATGCC 'AM049959 H. kanaloana (H) *' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGCCGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTTTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCCACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5324 morphotype P - H. kanaloana (NC)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCcTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCcTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTTTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTTTGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5323 morphotype P - H. kanaloana (NC) ' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCcTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCcTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTTTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTTTGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'AM049957 H. heteromorpha (FP) *' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGACAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACGAAAGAAACAACTGTTATTGGGCTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCA?CGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCC????????????? 'CP08 518 H. heteromorpha (FP)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCcTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGACAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACGAAAGAAACAACTGTTATTGGGCTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'FJ624535 H. heteromorpha (Phi)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGACAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTAATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACGAAAGAAACAACTGTTATTGGGCTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5346 morphotype O - H. heteromorpha (FP)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGACAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACGAAAGAAACAACTGTTATTGGGCTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5304 morphotype C - H. macroloba (NC)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACGAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTGGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5308 morphotype C - H. macroloba (NC)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACGAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTGGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'AM049960 H. macroloba (Tanz)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACGAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTGGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5322 morphotype C - H. macroloba (NC)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACGAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCcTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTGGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5321 morphotype C - H. macroloba (NC)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTGGTCTCAGGTGCTGATGGGCCTATGCCACAAACGAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTGGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCCATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5330 morphotype O - H. heteromorpha (NC)' GGAGCAGCTCAAATGGATGGAGCCATTTTAGTgGTCTCAGGTGCTGATGGGCcTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAGGTTGGAGTGCcTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGACGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGACAGATATGATTTTCCAGGCGATGATATCCCTATCATTAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGATGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCTGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTTGCTACAGGTCGAGTTGAAAGGGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACGAAAGAAACAACTGTTATTGGGCTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGGTCTATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGTTATCGACCACAATTTTATGTACGAACTACAGATGTCACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC 'IRD 5810 morphotype T - H. melanesica (NC)*' GGAGCAGCACAGATGGACGGAGCCATTTTAGTAGTCTCAGGTGCTGATGGGCCTATGCCACAAACAAAAGAACATATTTTATTAGCACAACAAGTTGGAGTGCCTGCTATTGTTGTTTTTCTTAATAAAATTGATCAGGTAGATGATGCAGATTTACTTGAACTTGTTGAGCTTGAAATTCGAGAAACTTTAGATAGATATGATTTTCCAGGTGATGATATTCCTATCATAAGTGGATCAGCTTTAGCTGCTGTTGAAGCTTTAACTACAAATCCGATGATCCAAAGAGGAGAAAACGAATGGGTAGATAAAATCTATAAATTGATGGACGTTATTGATGAAGAAATTCCTCTTCCGCCTCGAAGTACAGATAAAGATTTTCTCATGGCCGTTGAAAATGTTGTCTCTATTACAGGTCGGGGAACAGTGGCTACAGGTCGAGTTGAAAGAGGTCAAATAAAAGTTGGACAAAATGTTGAAATTGTAGGTCTTAAAGAAACAAAAGAAACAACTGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAAGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTACGTGGTGTTCAAAAAAATGAAATTCAACGTGGTATGGTTTTAGCAAAACCAGGCTCTATTACACCTCATACACGTTTTAAAGCTCAAGTATATATTTTGAAAAAAGATGAAGGTGGGCGTCATACTTCTTTTGTAGCAGGTTATCGACCGCAATTTTATGTACGAACTACAGATGTTACTGGAAAAATTGACTCTTTTCAAGGAGACGACGATAGTGAAATCCGTATGGTTATGCC AM049964_H._micronesica GGAGCAGCACAAATGGACGGTGCTATTTTAGTGGTCTCTGGTGCTGATGGACCGATGCCTCAAACAAAAGAACATATTTTACTGGCACAACAAGTTGGAGTACCTGCTATTGTTGTCTTTCTTAATAAAATTGATCAAGTAGATGATGAAGATTTGCTTGAACTTGTTGAACTTGAAATTCGAGAAACTTTACATCAATATGATTTTCCGGGGGATGATATTGCGATTATAAACGGATCAGCACTGGCTGCTGTAGAAGCATTAACTACAAATCCAATGATTCAAAGGGGCGAAAATGAATGGGTTGATAAAATATATAAATTAATGGATGTTATTGATGAAGAAATTCCTTTGCCGCCTCGAAGTACAGATAAAGATTTTTTAATGGCAATTGAAAATGTTGTTTCAATCACAGGTCGTGGCACAGTTGCGACAGGGCGAGTTGAGAGAGGTCAAATAAAAGTAGGAGAAACGATTGAAATCGTAGGTCTTAAAGCAACAAAAGAAACAACGGTTATTGGACTTGAAATGTTTCAAAAAACATTAGAGGAAAGTGTTGCTGGTGATAATGTTGGTGTTTTATTGCGTGGAGTTCAAAAAAATGAAATTCAACGCGGTATGGTTTTAGCAAAGCCTGGTTCAATTACACCTCATACACGTTTTAAGGCCCAAGTATATATTTTAAAAAAAGATGAAGGTGGACGTCATACTTCTTTTGTAGCAGGCTATCGACCACAATTTTATGTTCGAACTACAGATGTAACTGGTAAAATTGATTCATTTCAAGGAGATGACGATAGTGAAATTCGTATGGTAATGCC ; END; BEGIN TREES; Title Trees; LINK Taxa = Taxa2; TRANSLATE 1 'AM049958 H. incrassata (Bah)', 2 'FJ624534 H. incrassata (Car) *', 3 'AM049963 H. simulans (Jam)', 4 'IRD 5311 morphotype A (NC)', 5 'AM049962 H. monile (Pan)', 6 'CP08 908 H. borneensis (FP) ', 7 'CP08 1157 H. borneensis (FP)', 8 'CP08 886 H. borneensis (FP)', 9 'AM049955 H. borneensis (FP)', 10 'CP08 1081 H. borneensis (FP)', 11 'IRD 5309 morphotype B - H. borneensis (NC)', 12 'IRD 5310 morphotype B - H. borneensis (NC)', 13 'AM049961 H. melanesica (Phi)', 14 'AM049956 H. cylindracea (Ye)', 15 'IRD 5326 morphotype A - H. cylindracea (NC)', 16 'IRD 5325 morphotype A - H. cylindracea (NC)', 17 'AM049959 H. kanaloana (H) *', 18 'IRD 5324 morphotype P - H. kanaloana (NC)', 19 'IRD 5323 morphotype P - H. kanaloana (NC) ', 20 'AM049957 H. heteromorpha (FP) *', 21 'CP08 518 H. heteromorpha (FP)', 22 'FJ624535 H. heteromorpha (Phi)', 23 'IRD 5346 morphotype O - H. heteromorpha (FP)', 24 'IRD 5304 morphotype C - H. macroloba (NC)', 25 'IRD 5308 morphotype C - H. macroloba (NC)', 26 'AM049960 H. macroloba (Tanz)', 27 'IRD 5322 morphotype C - H. macroloba (NC)', 28 'IRD 5321 morphotype C - H. macroloba (NC)', 29 'IRD 5330 morphotype O - H. heteromorpha (NC)', 30 'IRD 5810 morphotype T - H. melanesica (NC)*', 31 AM049964_H._micronesica; TREE L1_NJ_1000_tree = ((((((((20:6.494E-5,21:-6.494E-5)0.38:3.572E-5,23:-3.572E-5)0.60:5.572E-5,22:0.00116759)0.61:4.808E-5,29:0.00116994)0.96:0.00379413,(25:0.0,(24:0.0,(27:0.0,(26:0.0,28:0.0)0.17:0.0)0.09:0.0)0.14:0.0)0.99:0.00352063)0.33:1.8924E-4,(17:0.00243654,(18:0.0,19:0.0)0.67:0.00121754)0.89:0.00111765)0.99:0.00636907,(((14:0.0,15:0.0)0.35:0.0,16:0.0)1.00:0.01263775,(4:0.01304898,(5:0.01493202,(3:0.00479403,(1:0.0,2:0.0)0.99:0.00374256)0.95:0.00456606)0.55:0.00156659)0.98:0.00928841)0.63:0.00274943)0.57:0.00304066,((13:-4.26E-6,30):0.00122229)1.00:0.0079696,((11:-3.2213E-4,12:3.2213E-4)0.87:0.00229542,((6:0.0,10:0.0)0.11:0.0,(9:0.0,(7:0.0,8:0.0)0.10:0.0)0.04:0.0)0.65:3.1536E-4)0.97:0.0058)0.73:0.00208882; TREE L1_ML_100_tree = (31:0.057034,((13:0.0,(30):0.001233)100:0.00393,(((5:0.015342,(3:0.007771999999999999,4:0.014758)95:0.002428)55:0.012915,(16:0.0,(14:0.0,15:0.0)100:0.0)100:0.010731)98:0.015106999999999999,((11:0.0,12:0.0)82:0.002465,(10:0.0,(9:0.0,(8:0.0,(6:0.0,7:0.0)93:0.0)51:0.0)44:0.0)87:0.0)94:0.006833,((24:0.0,(28:0.0,(27:0.0,(25:0.0,26:0.0)22:0.0)13:0.0)14:0.0)96:0.003701,((17:0.002475,(18:0.0,19:0.0)91:0.001237)68:0.001228,(22:0.001229,((20:0.0,29:0.001229)16:0.0,(21:0.0,23:0.0)19:0.0)44:0.0)94:0.003695)55:0.0)88:0.00605)80:0.004387)62:0.057034):0.003705; TREE L1_MP1000_tree = (((((((((20:0.0,29:1.0)0.10:0.0,23:0.0)0.09:0.0,21:0.0)0.19:0.0,22:1.0)0.95:3.0,(24:0.0,(25:0.0,(26:0.0,(27:0.0,28:0.0)0.10:0.0)0.09:0.0)0.19:0.0)0.85:2.0)0.22:1.0,17:2.0)0.03:0.0,(18:0.0,19:0.0)0.75:1.0)0.82:4.25,(((15:0.0,16:0.0)0.33:0.0,14:0.0)1.00:8.75,((13:0.0,30):1.0)0.96:2.5,((11:0.0,12:0.0)0.77:2.0,(6:0.0,(7:0.0,(10:0.0,(8:0.0,9:0.0)0.09:0.0)0.07:0.0)0.10:0.0)0.29:0.0)0.85:5.5)0.64:5.75)0.11:3.0)0.16:3.16666667; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 821; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 821; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 821; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1327639175604; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2491715426382053157; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 30 29; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 745591909209847749; mqVersion 275; checksumv 0 3 1572677901 null getNumChars 821 numChars 821 getNumTaxa 31 numTaxa 31 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 603985.0 sumSquares 5.303438921191498E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 214; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1440 788; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2491715426382053157 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2491715426382053157; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 242; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1226 721; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2491715426382053157 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1238.1327619215082.3630225670716986260; getTreeWindow; tell It; setExplanationSize 50; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1226 701; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #2491715426382053157 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1267.1327619344865.5414132248022187378; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1226 721; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 2; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #2491715426382053157 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1296.1327619469707.5605862415018930640; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1226 721; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 3; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #745591909209847749 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1226 721; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;