#NEXUS [written Thu Jul 07 16:58:53 BRT 2011 by Mesquite version 2.74 (build 550) at e17n495mo075nqo/192.168.1.101] BEGIN TAXA; TITLE Isomucor_28S_taxa; DIMENSIONS NTAX=27; TAXLABELS Lobosporangium_transversale_NRRL3116 Dissophora_decumbens_NRRL22416 Mortierella_verticillata_NRRL6337 Umbelopsis_ramanniana_NRRL5844 Backusella_circina_NRRL2446 Mucor_recurvus_NRRL3247 Rhizopus_microsporus_var._chinensis_CBS_262.28 Gilbertella_persicaria_NRRL2357 Cokeromyces_recurvatus_NRRL2243 Mucor_amphibiorum_NRRL28633 Mucor_indicus_NRRL28634 Hyphomucor_assamensis_NRRL22324 Parasitella_parasitica_NRRL2501 Mucor_fuscus_CBS132.22 unknown_Mucorales_FSU2822 Isomucor_trufemiae_MMBF87.09 Isomucor_trufemiae_MMBF88.09 Mucor_racemosus_NRRL3640 Mucor_circinelloides_NRRL22899 Mucor_circinelloides_f._lusitanicus_NRRL3631 Mucor_ramosissimus_NRRL3042 Actinomucor_elegans_NRRL3104 Zygorhynchus_heterogamus_NRRL1489 Mucor_mucedo_NRRL3635 Zygorhynchus_moelleri_FSU779 Mucor_hiemalis_f._hiemalis_NRRL3624 Rhizomucor_variabilis_NRRL28773 ; END; BEGIN CHARACTERS; TITLE Isomucor_28S_matrix; DIMENSIONS NCHAR=469; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Lobosporangium_transversale_NRRL3116 AGTAACGGCGAGTGAAGCGGGGTGAGCTCAAATTTAAAATCTGGCCGGTTTCTGGTCCGAGTTGTAGTTTAAAGAAGCGTTTTGTGGCAACCTGGGTAAATCCTTTGGAATAGGGTATCATAGAGGGTGAGAATCCCGTCTATGTGATACGTTTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTAAAATAGTGCGTGAAATTGTTGAAAGGGAAACGTTTGAAACCAGTGATGCGGGTGGAAAATCAGTGGATGCACTTTTTCATTTGCAGGTCAACATCAGTTTTCTTTGCTGGATAAAACTCTAAGACTGTGTTATAGGCGATACAGTGAAGGGGACTGAGGTTCGCAGCGTGTCTTCCACGCTTAG Dissophora_decumbens_NRRL22416 AGTAACGGCGAGTGAAGCGGGATGAGCTCAAATTTAAAATCTGGCTGGTTTCTAGTCCGAATTGTAGTTTAAAGAAGCGTTTTGTGGCAGCCTGGGTAAATCCTTTGGAACAGGGTATCATAGAGGGTGAGAATCCCGTCTATGTGATACGTTTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTGCGTGAAATTGTTGAAAGGGAAACGTTTGAAACCAGTCATGTAGTTGGAAAATCAGTGCATGCACTTTTTCTTCCGCAGGTCAACATCAGTTTCTTTTGCTGGACAAAACTCTTGAGCTGTGTTATAGGCGATACAGTGGAGGGGACTGAGGTTCGCAGCATGTCTTCCATGCTTAG Mortierella_verticillata_NRRL6337 AGTAACGGCGAGTGAAGCGGGATGAGCTCAAATTTGAAATCTGGCTGGTTTCTAGTCCGAGTTGTAATTTAAAGAAGCGTTTTGTGGCAGCCTGGGTAAATCCTTTGGAATAGGGTATCATAGAGGGTGAGAATCCCGTCTATGTGATACGTTTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTGCGTGAAATTGTTGAAAGGGAAACGTTTGACACCAGTCATGTGGGTGGAAAATCAGTGGATGCACTTTTTCATCTGCAGGTCAACATCAGTTTCTTTTGCTGGACAAAACTCCGAGACTGTGTTATAAGCGATACAGTGAAGGGGACTGAGGTTCGCAGCGTGTCTTCCACGCTTAG Umbelopsis_ramanniana_NRRL5844 AGTAACGGCGAGTGAAGCGGGAAGAGCTCAAATTTAAAATCTGGTTTACTTTAAGCCCGAGTTGTAGTCTGAAGAAACGTTTTCATAAGCACTGAGGAAGTCCCTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGTGATACGTTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAACCAGTACGTGAAATTGTTGAAAGGGAACCGTTTGAAGCCAGTCTTACTTGCTCGTGATCAATGAATGCACTCTCGGGATGGTAGGCCAACGACAGTTTAGAATGCGAGAAAAAAATAGGGGAGGGTGTTATAGAAAATATCGTGTTCTGGACTGAGGATCGCAGCAAATCTAATTTGCTTAG Backusella_circina_NRRL2446 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAATCCGGTTGCCCTGTAATTGGAATTGTAAACTGGAGAGGTGTTTTCAGGCGAGCCAAGCAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGCGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTGAAAGGGAACCGGTTGGAGCCAGACCGGCTGCTCTATAATCAATGGATGCACTTGTAGGTTAGCCTGCCAACAGCAATTTTCTTTGGTGGAAAAAACTAGAAGGGGGTGTTATAGAAAATACACTGAAGGGGATTGAGGACTGCAGCAAATTCTATTTGCTTAG Mucor_recurvus_NRRL3247 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAATCCGGCTGCCCTGTAGTTGGAATTGTAAACTGGAGAGGTGTTTTCAGGCGAGCCAAGCAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGCGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTGAAAGGGAACCGGTTGGAGCCAGACCGGCTGTTCTATAATCAATGGATGCACTTGTAGGTTAGCCTGCCAACAGCAATTTTCTTTGGTGGAAAAAACTAGGAGGGGGTGTTATAGAAAATACACTGAAGGGGATTGAGGACTGCAGCAAATTCTATTTGCTTAG Rhizopus_microsporus_var._chinensis_CBS_262.28 AGTAACGGCGAGTGAACAGGAAAAAGCTCAAAGTTGGAACCTGTTTGGCCTCTAAACCGGATTGTAAACTGTAGAAGTGTTTTCAGGCAAGCCGGACAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGCGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCGAGAAACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTGTCTGTAATCAGTGGATGCACTTGCAGGTATGCCTGCCAACGACAATTTGGCTTGAGGGAAAAAACTAGGGGAGGGTGTTATAGAAAATACCTTGGGCTGGATTGAGGTACGCAGCGAATTCTATTCGCTTAG Gilbertella_persicaria_NRRL2357 AGTAACGGCGAGTGAACAGGAAAGAGCTCAAAGTTGGAACCCGTTTGGTTTCCAAACCGGATTGTAAACTGTAGAAGTGTTTTCTGACACGCCTGATAAGTCCATTGGAACATGGTGACATAGAGGGTGAGAGCCCCGTTTTTGTGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCAAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGACCTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGGTTGGAGCCAGACTGGGTTGATTGTAATCAATGGATGCACTTGCAGTTATGCCTGACAACGACAATTCATTCTGGAGGAAAAAACTAGGAGGGGGTGTTATAGAAAATACTCTGGGTTGGATTGAGGAACGCAGTGGATTTCATCCCCTTAG Cokeromyces_recurvatus_NRRL2243 AGTAACGGCGAGTGAAGAGGAAAAAGCTCAAAGTTGTAACCTATTTGGCTTCCAAATCGGATTGTAGACTGGAGAAGTGTTTTATGGCACGCCGAGTAAGTCCCTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTAACTTTAATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACCGGCTTTATCGTAATCAATGGATGCACTTGCGGTTTTGCCTGCCAACGACAGTTTTTTTTGAGGGAAAAAACTAGGAGGGGGTGTTATAGAAAATACCTTGAATTGGACTGAGGAACGCAGCGAATTTTATTCGCTTAG Mucor_amphibiorum_NRRL28633 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCTAAACCGGATTGTAAACTGTAGAAACGTTTTCTGGCACGCCAGATAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGTGATACGTTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTGATCGTAATCAATGGATGCACTTGCGGTTATGCCTGCCAACGACAGTTCTTTCTGAAGGATAAAACTAGGAGGGGGTGTTATAGATAATACTTTGGATGGGACTGAGGAACGCAGTGAATTATATTCACTTAG Mucor_indicus_NRRL28634 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCTAAACCGGATTGTAAACTGTAGAAACGTTTTCTGGCACGCCAGATAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTATTGCGATACGTTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTGATCGTAATCAATGGATGCACTTGCGGTTATGCCTGCCAACGACAGTTCTTTCTGAAGGATAAAACTAGGAGGGGGTGTTATAGATAATACTTTGGATGGGACTGAGGAACGCAGTGAATTCTATTCACTTAG Hyphomucor_assamensis_NRRL22324 AGTATCGCCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCTAAACCGGATTGTAAACTGTAGAAGTGTTTTCTGACACGCCAGATAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTCTGTGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTCCCGTGAGGGAAAGATGAGAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGGTTGGAGCCAGACTGGCTTGGCTGTAATCAATGGATGCACTTGCAGTTATGCCTGGCAACGACAATTTTTTCTAAAGGAAAAAACCAAGAGGGGGTGTTATAGAAAATACTTTGGATTGGATTGAGGAACGCAGCGAATTTCACTCGCTTAG Parasitella_parasitica_NRRL2501 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAATCTGTTTGGCTTCTAAACCGAGTTGTAAACTGTAGAGGCATTTCCAGGTACACTAGACAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTATTGTGATATGTCTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATCTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGGTTGGAGCCAGACTGGCTTGATTGTAATCAACGGGTGCACTTGCAGTTATGCCTGCCAACAACAGTTTGATCTGGAGGAAAAAATTAGCCGGAGGTGTTATAGATCATACTCTGGGTTGGACTGAGGATCGCAGCGAATCTTATTCGCTTAG Mucor_fuscus_CBS132.22 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCTAAACCGGATTGTAAACTGTAGAAGTGTTTTCTGATACGCCAGATAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGTGATACATTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAAAGGGAGGTAAATCTCTCCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTGACTGTAATCAATGGATGCACTTGCAGTTATGCCTGCCAACGACAATTTTTTTTGGGAGAAAAAACTGGGAGGGGGTGTTATAGAAAATATCCTGGATTGGATTGAGGATCGCAGTGAATTTTATTCGCTTAG unknown_Mucorales_FSU2822 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCTAAACCGGATTGTAAACTGTAGACGTGTTTTCAGGTACGCCAGATAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTATTGTGATACGCGTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTGACTGTAATCAATGGATGCACTTGCAGTTATGCCTGCCAATAACAATTTGATTTGAGGGAAAAAACTGAGAGGGGGTGTTATAGAAAATACCTTGGGTTGGATTGAGGATCGCAGTGAATTTTATTCGCTTAG Isomucor_trufemiae_MMBF87.09 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCCAAACCGGATTGTAAACTGTAGACGTGTTTTCAGGTACGCCAGATAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTATTGTGATACGCGTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAAAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTGACTGTAATCAATGGATGCACTTGCAGTTATGCCTGCCAATAACAATTTGATTTGAGGGAAAAAACTGAAAGGGGGTGTTATAGAAAATACCTTGGATTGGATTGAGGATCGCAGTGAATTTTATTCGCTTAG Isomucor_trufemiae_MMBF88.09 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCCAAACCGGATTGTAAACTGTAGACGTGTTTTCAGGTACGCCAGATAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTATTGTGATACGCGTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAAAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTGACTGTAATCAATGGATGCACTTGCAGTTATGCCTGCCAATAACAATTTGATTTGAGGGAAAAAACTGAAAGGGGGTGTTATAGAAAATACCTTGGATTGGATTGAGGATCGCAGTGAATTTTATTTGCTTAG Mucor_racemosus_NRRL3640 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCTAAACCGGATTGTAAACTGTAGAAACATTTTCAGATACACTAGACAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTATTGTGATATGTTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGATTGGCTTGATTGTAATCAACGGGTGCACTTGCAGTTATGCCTGCCAACGACAGTTTGATTTGGAGGAAAAAATTAATAGGAGGTGTTATAGATCATACTCTGGATTGGACTGAGGAACGCAGTGAATTTTATTCGCTTAG Mucor_circinelloides_NRRL22899 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAAACTGTTTGGCTTCTAAACCGTATTGTAAACTGTAGAAACATTTTCTGGCAAGCCGGATAAGTCCTTTGGAACAAGGCATCATGGAGGGTGAGAATCCCGTTTTTGTGATATGTTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGTTTGACTGTAATCAACGGGTGCACTTGCAGTTATACCTGCCAACAACAGTTTGATTTGGAGGAAAAAATTAGTAGGAGGTGTTATAGATCATACTCTGGATTGGACTGAGGAACGCAGCGAATTTTATTCGCTTAG Mucor_circinelloides_f._lusitanicus_NRRL3631 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAAACTGTTTGGCTTCTAAACCGTATTGTAAACTGTAGAAACATTTTCTGGCACACCAGATAAGTCCTTTGGAACAAGGCATCATGGAGGGTGAGAATCCCGTTTTTGTGATATGTTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGTTTGCTTGTAATCAACGGGTGCACTTGCAGGTATACCTGCCAACAACAGTTTGATTTGGAGGAAAAAATTAATAGGAGGTGTTATAGATCATACTCTGGATTGGACTGAGGAACGCAGCGAATTTTATTCGCTTAG Mucor_ramosissimus_NRRL3042 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAAACTGTTTGGCTTCTAAACCGTATTGTAAACTGTAGAAACATTTTCTGGCACACCAGATAAGTCCTTTGGAACAAGGCATCATGGAGGGTGAGAATCCCGTTTTTGTGATATGTTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGTTTGCCTGTAATCAACGGGTGCACTTGCAGGTATACCTGCCAACAACAGTTTGATTTGGAGGAAAAAATTAGTAGGAGGTGTTATAGATCATACTCTGGATTGGACTGAGGAACGCAGCGAATTTTATTCGCTTAG Actinomucor_elegans_NRRL3104 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGCTTGGCTTCCAAGCCGGATTGTAAACTGTAGAAGTGTTTTCTGACACGCCAGGCAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGCGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTGGCTGTAATCAATGGATGCACTTGCGGCTATGCCTGCCAACGACAGTTTTATTTGGGGGAAAAAACCAGGCGGGGGTGTTATAGAAAATACCCTGGATTGGACTGAGGATCGCAGCGAATTTTATTCGCTTAG Zygorhynchus_heterogamus_NRRL1489 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCTAAACCGGATTGTAAACTGTAGAAGTGTTTTCAGGCACGCCAGGTAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGTGATACATTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGGTTGGAGCCAGACTGGCTTGACTGTAATCAATGGATGCACTTGCGGTTATGCCTGCCAACGACAATTTTTTTTCTGGGAAAAAACCAAGAGGGGGTGTTATAGAAAATACCAGGAATTGGATTGAGGAACGCAGCGAATTTTATTCGCTTAG Mucor_mucedo_NRRL3635 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCTAAACCGGATTGTAAACTGTAGAAGTGTTTTCTGACACGCCTGGTAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGTGATACATTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGGTTGGAGCCAGACTGGCTTGATCGTAATCAATGGATGCACTTGCGGTTTTGCCTGCCAACGACAATTTTTTCTGGGGGAAAAAACTAATGTGGGGTGTTATAGAAAATACCCTGGATTGGATTGAGGAACGCAGTGAATTTTATTCGCTTAG Zygorhynchus_moelleri_FSU779 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCTAAACCGGATTGTAAACTGTAGAAGTGTTTTCTGACACGCCTGGTAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGTGATACATTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTGACTGTAATCAATGGATGCACTTGCGGTTATGCCTGCCAACGACAGTTTTATTTGGGGGAAAAAATTATTGGGAGGTGTTATAGAAAATACCCTGGATTGGACTGAGGAACGCAGTGAATTTTATTCGCTTAG Mucor_hiemalis_f._hiemalis_NRRL3624 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTATTTGGCTTCTAAATCGGATTGTAAACTGTAGAAGTGTTTTCAGACACGCCTGGTAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGTGATACATTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTAATCGTAATCAATGGATGCACTTGCGGTTATGCCGGCCAACGACAGTTTTGTTTGGGAGAAAAAATTACATTGGGGTGTTATAGAAAATATCCTGGACTGGACTGAGGAACGCAGTGAATTTTATTCGCTTAG Rhizomucor_variabilis_NRRL28773 AGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTCTAAACCGGATTGTAAACTGTAGAAGTGTTTTCAGACACGCCTGGTAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTTTTTGTGATACATTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAGAACTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAGACTGGCTTGATTGTAATCACTGGATGCACTTGCGGTTATGCCGGCCAACGACAGTTTTGTTTGAGGGAAAAAATTACATTGGGGTGTTATAGAAAATACCTTGGACGGGACTGAGGAACGCAGCGAATTTTATTCGCTTAG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 469; END; BEGIN TREES; Title Isomucor_28S_tree; LINK Taxa = Isomucor_28S_taxa; TRANSLATE 1 Lobosporangium_transversale_NRRL3116, 2 Dissophora_decumbens_NRRL22416, 3 Mortierella_verticillata_NRRL6337, 4 Umbelopsis_ramanniana_NRRL5844, 5 Backusella_circina_NRRL2446, 6 Mucor_recurvus_NRRL3247, 7 Rhizopus_microsporus_var._chinensis_CBS_262.28, 8 Gilbertella_persicaria_NRRL2357, 9 Cokeromyces_recurvatus_NRRL2243, 10 Mucor_amphibiorum_NRRL28633, 11 Mucor_indicus_NRRL28634, 12 Hyphomucor_assamensis_NRRL22324, 13 Parasitella_parasitica_NRRL2501, 14 Mucor_fuscus_CBS132.22, 15 unknown_Mucorales_FSU2822, 16 Isomucor_trufemiae_MMBF87.09, 17 Isomucor_trufemiae_MMBF88.09, 18 Mucor_racemosus_NRRL3640, 19 Mucor_circinelloides_NRRL22899, 20 Mucor_circinelloides_f._lusitanicus_NRRL3631, 21 Mucor_ramosissimus_NRRL3042, 22 Actinomucor_elegans_NRRL3104, 23 Zygorhynchus_heterogamus_NRRL1489, 24 Mucor_mucedo_NRRL3635, 25 Zygorhynchus_moelleri_FSU779, 26 Mucor_hiemalis_f._hiemalis_NRRL3624, 27 Rhizomucor_variabilis_NRRL28773; TREE Imported_tree_0 = ((((((((((21:0.0,20:0.0049)81:0.00604,19:0.00651)96:0.02034,(18:0.00901,13:0.04454)92:0.01668)99:0.03465,(11:0.00624,10:0.00137)98:0.02862)92:0.01804,((23:0.02432,(12:0.03364,8:0.08279)43:0.0143)55:0.00507,(((16:0.00242,17:0.0)90:0.00826,15:0.00154)100:0.03774,14:0.01544)87:0.01072)85:0.00652)69:0.00251,(((27:0.01349,26:0.0144)96:0.01962,24:0.01927)18:0.00637,25:0.00715)89:0.01392)81:0.00676,(22:0.0205,((6:0.00962,5:0.0)100:0.1218,7:0.04202)91:0.02869)81:0.00833)76:0.01641,9:0.05683)98:0.1485,4:0.1405)100:0.01728,(2:0.0307,(3:0.01298,1:0.03409)62:0.00713)100:0.3095); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 469; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 469; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1310068733666; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6116743226344421398; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5650907847789618037; mqVersion 274; checksumv 0 2 2322040367 null getNumChars 469 numChars 469 getNumTaxa 27 numTaxa 27 short true bits 15 states 15 sumSquaresStatesOnly 276069.0 sumSquares 276069.0 NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 704; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5650907847789618037 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;