#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS Alternaria_brassicae_strain_B_DQ156344 Alternaria_pomicola_strain_PL1_AF314583 Alternaria_citri_strain_AC2_AF314579 Alternaria_aff._dianthicola_RHR2_clone_AY923859 Alternaria_abutilonis_strain_QMT_AF314578 Alternaria_gaisen_isolate_NW576_EU520078 Alternaria_longipes_strain_EGS30.033_AY751457 Bionectria_ochroleuca_isolate_X12_AB470908 Alternaria_alternata_wb398_AF455448 Alternaria_longipes_isolate_GL1YS4_AB369424 Alternaria_brassicae_FJ869872 Alternaria_compacta_strain_15_FR846400 Alternaria_triticimaculans_strain_EGS_40.150_AY762949 Alternaria_palandui_isolate_Alt14_DQ323687 Marssonina_mali_isolate_NW195_EU520097 Phomopsis_sp._G26_EF432256 Alternaria_tenuissima_CZ075A_FJ755199 Alternaria_marmelos_1005AMLBRT Alternaria_solani_isolate_ICMP_6519.79_Y17069 Alternaria_linicola_Y17086 Alternaria_crassa_strain_DGG_Acr1_AF229464 Alternaria_infectoria_isolate_4A_Y17066 Alternaria_alternata_isolate_IEIHBT_GQ121322 Alternaria_mali_AY154683 Alternaria_tenuissima_strain_IA287_AY154712 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1023; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Alternaria_brassicae_strain_B_DQ156344 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggagga----------------------------------------------------------- Alternaria_pomicola_strain_PL1_AF314583 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggagga----------------------------------------------------------- Alternaria_citri_strain_AC2_AF314579 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggagga----------------------------------------------------------- Alternaria_aff._dianthicola_RHR2_clone_AY923859 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggagga----------------------------------------------------------- Alternaria_abutilonis_strain_QMT_AF314578 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggagga----------------------------------------------------------- Alternaria_gaisen_isolate_NW576_EU520078 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggggaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggagga----------------------------------------------------------- Alternaria_longipes_strain_EGS30.033_AY751457 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tctccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggaggaa---------------------------------------------------------- Bionectria_ochroleuca_isolate_X12_AB470908 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggaggaa---------------------------------------------------------- Alternaria_alternata_wb398_AF455448 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ggaagtaaaagtcgtaacaaggtctccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggaggaa---------------------------------------------------------- Alternaria_longipes_isolate_GL1YS4_AB369424 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggaggaa---------------------------------------------------------- Alternaria_brassicae_FJ869872 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tctccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggaggaaaa-------------------------------------------------------- Alternaria_compacta_strain_15_FR846400 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------acattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggaggaaaaaaaa---------------------------------------------------- Alternaria_triticimaculans_strain_EGS_40.150_AY762949 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------acct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggaggaaaaa------------------------------------------------------- Alternaria_palandui_isolate_Alt14_DQ323687 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------agaggatcatatacgccggtaggaaggacgggctggaatct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagccggaggaa--------------------------------------------------------- Marssonina_mali_isolate_NW195_EU520097 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ggactgcggagggatcattacaSWMatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgcKgaWc-ttaagcatatca-taaccg---------------------------------------------------------------- Phomopsis_sp._G26_EF432256 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aaaaagtcgtaacaaggtctccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagcggaggaaaagaaaccaacagggattgccctagtaacggcgagtgaagcggcaac----------- Alternaria_tenuissima_CZ075A_FJ755199 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tctcggggtt-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcactctctatcag--caaaggtctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggatacccgctgaactttaagcatatcaataagcggaggaaaagaaaccaacagggattgccctagtaacggcgagtgaagcggcaacagctcaaattt Alternaria_marmelos_1005AMLBRT ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gactcctccgta-gggtaaacctgcgaaggaataaataaacaaagagg-aggaagggctggaatct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgacttttgcctacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttccttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcacaagtcgcacgctcaatcag--caaaaggctagcatccattaagcc----tttttttcaacttttgacctcggatcaggtagggaaacccgcggaacatcaagaaaa-aaataagcggaggaagcc------------------------------------------------------- Alternaria_solani_isolate_ICMP_6519.79_Y17069 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cacaaatatg-aaggcgggctggcacct---------------------------cccggggtggccagccttgctgaattattccacccgtgtcttttgcgtacttcttgtttccttggtgggctcgcccaccacaagga-ccaacccataaacctttttgcaatggcaatcagcgtcagtaacaatgtaataatttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctttttgtctcc---ccttgcgggagactcgccttaaagtcattggcagccggcctactggtttcggagcgcagcacaagtcgcgctctcttccagccccaaggtctagcatccaccaagcc--tttttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagc----------------------------------------------------------------- Alternaria_linicola_Y17086 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cacaaatatg-aaggcgggctggcacct---------------------------cccggggtggccagccttgctgaattattccacccgtgtcttttgcgtacttcttgtttccttggtgggctcgcccaccacaagga-ccaacccataaacctttttgcaatggcaatcagcgtcagtaacaatgtaataatttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctttttgtctcc---ccttgcgggagactcgccttaaagtcattggcagccggcctactggtttcggagcgcagcacaagtcgcgctctcttccagccccaaggtctagcatccaccaagcc---ttttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagc----------------------------------------------------------------- Alternaria_crassa_strain_DGG_Acr1_AF229464 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------agggatcattacacaaatatg-aaggcgggctggcacct---------------------------ctcggggtggccagccttgctgaattatt-cacccgtgtcttttgcgtacttcttgtttccttggtgggctcgcccaccacaagga-ccaacccataaacctttttgtaatggcaatcagcgtcagtaacaatgtaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctttttgtctcc-cccatgcggggagactcgccttaaagtcattggcagccggcctactggtttcggagcgcagcacaagtcgcgctctcttccagccccaaggtctagcatccaccaagcctttttttttttcaacttttgacctcggatcaggtagggatacccgctgaac-ttaca------------------------------------------------------------------------------ Alternaria_infectoria_isolate_4A_Y17066 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cacaataac--aaggcgggctggacaccccccgctgggcactgcttcacggcgtgcgcggcggggccggccctgctgaattatt-cacccgtgtcttttgcgtacttcttgtttcctgggtgggctcgcccgccctcaggaccaaccac---aaaccttttgcaatagcaatcagcgtcagtaacaacgtaattaattacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgatacgtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---ttgtctccagttcgctggagactcgccttaaagtcattggcagccggcctactggtttcggagcgcagcacaagtcgcgctcttcgccag--ccaaggtc-agcgtccagcaagcc----tttttttcaacctttgacctcggatcaggtagggatacccgctgaac-ttaagcatatcaataagc----------------------------------------------------------------- Alternaria_alternata_isolate_IEIHBT_GQ121322 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttgatggctcagtgaggccttcggactggctcgaggaggttggcaacgaccacctcaagccggaaagttcgtcaaactcggtcatttagaggaagtaaaagtcgtaacaaggtctccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa-ttacaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggcgtctt---gtctct-agctttgctggagactcgccttaaagtaattggcagccggcctactggtttcggagcgcagcaca----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Alternaria_mali_AY154683 acaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgacagagccaacgagttcttttccttgttcgaaagaattgggtaatcttgttaaactctgtcgtgctggggataaagcattgcaattattgcttttcaacgaggaatgcctagtaagcgcgtgtcatcagcatgcgttgattacgtccctgacctttgtacacaccgcccgtcgctactaccgattgaatggctcagtgaggccttcggactggctcgaggaggttggcaacgaccacctcaagccggaaagttcgtcaaactcggtcatttagaggaagtaaaagtcgtaacaaggtctccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Alternaria_tenuissima_strain_IA287_AY154712 acaggtctgtgatgcccttagatgttctgggccgcacgcgcgctacactgacagagccaacgagttcttttccttgttcgaaagaattgggtaatcttgttaaactctgtcgtgctggggataaagcattgcaattattgcttttcaacgaggaatgcctagtaagcgcgtgtcatcagcatgcgttgattacgtccctgacctttgtacacaccgcccgtcgctactaccgattgaatggctcagtgaggccttcggactggctcgaggaggttggcaacgaccacctcaagccggaaagttcgtcaaactcggtcatttagaggaagtaaaagtcgtaacaaggtctccgtaggtgaacctgcggagggatcattacacaaatatg-aaggcgggctggaacct---------------------------ctcggggtta-cagccttgctgaattatt-cacccttgtcttttgcgtacttcttgtttccttggtgggttcgcccaccactagga-caaacat---aaaccttttgtaattgcaatcagcgtcagtaacaaattaataa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ; END; BEGIN mrbayes; charset Character_Matrix = 1 -1023; partition matrices = 1 : Character_Matrix; set partition = matrices; lset applyto = ( 1 ) nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.5 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; mcmc; END; BEGIN TREES; Title Bayes_result; LINK Taxa = Taxa; TRANSLATE 1 Alternaria_brassicae_strain_B_DQ156344, 2 Alternaria_pomicola_strain_PL1_AF314583, 3 Alternaria_citri_strain_AC2_AF314579, 4 Alternaria_aff._dianthicola_RHR2_clone_AY923859, 5 Alternaria_abutilonis_strain_QMT_AF314578, 6 Alternaria_gaisen_isolate_NW576_EU520078, 7 Alternaria_longipes_strain_EGS30.033_AY751457, 8 Bionectria_ochroleuca_isolate_X12_AB470908, 9 Alternaria_alternata_wb398_AF455448, 10 Alternaria_longipes_isolate_GL1YS4_AB369424, 11 Alternaria_brassicae_FJ869872, 12 Alternaria_compacta_strain_15_FR846400, 13 Alternaria_triticimaculans_strain_EGS_40.150_AY762949, 14 Alternaria_palandui_isolate_Alt14_DQ323687, 15 Marssonina_mali_isolate_NW195_EU520097, 16 Phomopsis_sp._G26_EF432256, 17 Alternaria_tenuissima_CZ075A_FJ755199, 18 Alternaria_marmelos_1005AMLBRT, 19 Alternaria_solani_isolate_ICMP_6519.79_Y17069, 20 Alternaria_linicola_Y17086, 21 Alternaria_crassa_strain_DGG_Acr1_AF229464, 22 Alternaria_infectoria_isolate_4A_Y17066, 23 Alternaria_alternata_isolate_IEIHBT_GQ121322, 24 Alternaria_mali_AY154683, 25 Alternaria_tenuissima_strain_IA287_AY154712; TREE PAUP_1 = ((22:0.08889,(21:0.018514,(19:0.0,20:0.0):0.0):0.027289):0.0210195,(17:0.013298,((23:0.003656,(24:0.0,(25:0.0,(1:0.0,2:0.0):0.0):0.0):0.0):0.0,(16:0.001659,(15:0.008154,((14:0.025106,18:0.06553):0.02135,(13:0.0,(12:0.002012,(11:0.0,(10:0.0,(9:0.0,(8:0.0,(7:0.0,(6:0.001869,(5:0.0,(3:0.0,4:0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.001672):0.0):0.0):0.0210195)[% ] [% ] [% setBetweenBits = selected ]; END;