#NEXUS [written Fri Jul 29 14:17:24 EDT 2011 by Mesquite version 2.74 (build 550) at Daryl_Lam/132.235.146.154] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Sirodotia_aff_huillensis_Isolate_South_Africa Sirodotia_delicatula_Genbank_AY780529 Sirodotia_delicatula_Genbank_AY780535 Sirodotia_goebelii_Isolate_Australia Sirodotia_huillensis_Genbank_AY780546 Sirodotia_huillensis_Isolate_Arizona_USA Sirodotia_huillensis_Isolate_Texas_USA Sirodotia_suecica_Isolate_Australia Sirodotia_suecica_Isolate_Canada Sirodotia_suecica_Isolate_Finland1 Sirodotia_suecica_Isolate_Finland2 Sirodotia_suecica_Isolate_Finland3 Sirodotia_suecica_Isolate_Finland4 Sirodotia_suecica_Isolate_New_Zealand Sirodotia_suecica_Isolate_Rhode_Island_USA Sirodotia_suecica_Isolate_South_Africa Sirodotia_suecica_Isolate_South_Carolina_USA Sirodotia_tenuissima_Isolate_Finland5 Sirodotia_tenuissima_Isolate_Finland6 Sirodotia_tenuissima_Isolate_Rhode_Island_USA ; END; BEGIN CHARACTERS; TITLE 'cox2-cox3 spacer'; DIMENSIONS NCHAR=378; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Sirodotia_aff_huillensis_Isolate_South_Africa GCTGTTCCTGGTCGTTTAAATCAGACTTCCATGTTTGTAAAACGAGAAGGTTTATATTATGGTCAATGTAGCGAAATATGTGGCATAAATCATGGTTTTATGCCTATAGTAGTTGAAGCTGTAGCTTTACCGAACTATGTAACTTGAATTTATAATAAATTGTCTACTCAATAATGCGTCTTTCTATACTTCAATTTTTAATGCTAGTAGTTATATTTGGTGTTTTTTTTGTTAAAACTGACTATTTTAGTCATTTTCTAACAAAGTTGAACTCTTTAGTTTCCTCCAAGGTTTGAAATAACAAAAAATAACTTC--AAAAACTTAAACAAACTTATAATAATGATATCTTTAACAAAAATTTCAAAATCTACACAAA Sirodotia_delicatula_Genbank_AY780529 GCTGTCCCTGGTCGTTTAAATCAAACTTCCATGTTTGTAAAACGTGAAGGTTTATATTATGGTCAATGTAGCGAAATATGTGGGATAAATCATGGTTTCATGCCTATAGTAGTTGAAGCTGTAGCTTTACCAAATTATGTAACTTGAATTTATAATAAATTGTATACTCAATAATGCGTCTTTCTATATTCCAAATTTTAATGCTGGTAGTTATATTTAGTGTTTTTTTTGTTAAAACTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAGTTTCTTCCAAAGCTTGAAATAACAAAAAATAGCTTC--AAAAACTTAAACAAACTTATAATAATGATATCTTTAACAAAAATTTCAAAGTCCACACAGA Sirodotia_delicatula_Genbank_AY780535 GCTGTCCCTGGTCGTTTAAATCAAACTTCCATGTTTGTAAAACGTGAAGGTTTATATTATGGTCAATGTAGCGAAATATGTGGGATAAATCATGGTTTCATGCCTATAGTAGTTGAAGCTGTAGCTTTACCAAATTATGTAACTTGAATTTATAATAAATTGTATACTCAATAATGCGTCTTTCTATATTCCAAATTTTAATGCTGGTAGTTATATTTAGTGTTTTTTTTGTTAAAACTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAGTTTCTTCCAAAGCTTGAAATAACAAAAAATAGCTTC--AAAAACTTAAACAAACTTATAATAATGATATCTTTAACAAAAATTTCAAAGTCCACACAGA Sirodotia_goebelii_Isolate_Australia GCTGTACCTGGTCGCTTAAATCAGACCTCCATGTTCGTAAAACGAGAAGGTCTATATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTACGTAACTTGGATTTACAATAAATTATGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATGTCTTCCAAAGTTTGGAATAATAAAAAATAACTTCTTAAAAACTTAAACAAACTTATAATAATGATACCCCTAACAAAAATTTCGAAGTCTACACAAA Sirodotia_huillensis_Genbank_AY780546 GCTGTTCCTGGTCGTTTAAACCAAACTTCTATGTTTGTAAAACGGGAAGGTTTATATTATGGTCAATGTAGTGAAATATGTGGGATAAATCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGATTTACCAAATTATGTAACTTGAATTTATAACAAATTGTATACTCAGTAATGCGTCTTTCTATACTCCAATTTTTAATGCTGTTAGTTATATTTAGTATTTTTTTTGTTAAAACTGACTACCTGAGTCATTTTCTAGCAAAGCTAAACTCTTTCGTTTCTTCTAGCGCT-GAAATAACAAAAAATAATT---TAAAAACTTAAACAAACTTATAATAATGATATCCTTAACAAAAATTTCAAAGTCTACACAAA Sirodotia_huillensis_Isolate_Arizona_USA GCTGTTCCTGGTCGTTTAAACCAAACTTCTATGTTTGTAAAACGGGAAGGTTTATATTATGGTCAATGTAGTGAAATATGTGGGATAAATCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGATTTACCAAATTATGTAACTTGAATTTATAACAAATTGTATACTCAGTAATGCGTCTCTCTATACTCCAATTTTTAATGCTGTTAGTTATATTTAGTATTTTTTTTGTTAAAACTGACTATCTGAGTCATTTTCTAGCAAAGCTAAACTCTTTCGTTTCTTCTAGTGCTTGAAATAACAAAAAATAATT---TAAAAACTTAAACAAACTTATAATAATGATATCCTTAACAAAAATTTCAAAGTCTACACAAA Sirodotia_huillensis_Isolate_Texas_USA GCTGTTCCTGGTCGTTTAAACCAAACTTCTATGTTTGTAAAACGGGAAGGTTTATATTATGGTCAATGTAGTGAAATATGTGGGATAAATCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGATTTACCAAATTATGTAACTTGAATTTATAACAAATTGTATACTCAGTAATGCGTCTTTCTATACTCCAATTTTTAATGCTGTTAGTTATATTTAGTATTTTTTTTGTTAAAACTGACTACCTGAGTCATTTTCTAGCAAAGCTAAACTCTTTCGTTTCTTCTAGCGCTTGAAATAACAAAAAATAATT---TAAAAACTTAAACAAACTTATAATAATGATATCCTTAACAAAAATTTCAAAGTCTACACAAA Sirodotia_suecica_Isolate_Australia GCTGTACCTGGTCGCTTAAATCAGACCTCCATGTTCGTAAAACGAGAAGGTCTATATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTACGTAACTTGGATTTACAATAAATTATGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATGTCTTCCAAAGTTTGGAATAATAAAAAATAACTTCTTAAAAACTTAAACAAACTTATAATAATGATACCCCTAACAAAAATTTCGAAGTTTACACAAA Sirodotia_suecica_Isolate_Canada GCTGTACCTGGTCGCTTAAATCAGACCTCCATGTTCGTAAAACGGGAAGGTTTGTATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTAACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATATCTTCCAAAGTTTGGAATAATAAAAAATAACTCCTTAAAAACTTAAACAAACTTATAATAATGATACCTCTAACAAAAATTTCAAAGTCTACACAAA Sirodotia_suecica_Isolate_Finland1 GCTGTACCTGGTCGCTTAAATCAGACCTCTATGTTCGTAAAACGGGAAGGTCTGTATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTAACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATGTCTTCCAAAGTTCGGAATAATAAAAAATAACTTCTTAAAAACTTAAACAAACTTATAATAATGATACCCCTAACAAAAATTTCGAAGTCTACACAAA Sirodotia_suecica_Isolate_Finland2 GCTGTACCTGGTCGCTTAAATCAGACCTCTATGTTTGTAAAACGGGAAGGTCTGTATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTAACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATGTCTTCCAAAGTTCGGAATAATAAAAAATAACTTCTTAAAAACTTAAACAAACTTATAATAATGATACCCCTAACAAAAATTTCGAAGTCTACACAAA Sirodotia_suecica_Isolate_Finland3 GCTGTACCTGGTCGCTTAAATCAGACCTCTATGTTCGTAAAACGGGAAGGTCTGTATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTAACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATGTCTTCCAAAGTTCGGAATAATAAAAAATAACTTCTTAAAAACTTAAACAAACTTATAATAATGATACCCCTAACAAAAATTTCGAAGTCTACACAAA Sirodotia_suecica_Isolate_Finland4 GCTGTACCTGGTCGCTTAAATCAGACCTCTATGTTCGTAAAACGGGAAGGTCTGTATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTAACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATGTCTTCCAAAGTTCGGAATAATAAAAAATAACTTCTTAAAAACTTAAACAAACTTATAATAATGATACCCCTAACAAAAATTTCGAAGTCTACACAAA Sirodotia_suecica_Isolate_New_Zealand GCTGTACCTGGTCGCTTAAATCAGACCTCCATGTTCGTAAAACGAGAAGGTCTATATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTACGTAACTTGGATTTACAATAAATTATGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATGTCTTCCAAAGTTTGGAATAATAAAAAATAACTTCTTAAAAACTTAAACAAACTTATAATAATGATACCCCTAACAAAAATTTCGAAGTCTACACAAA Sirodotia_suecica_Isolate_Rhode_Island_USA GCTGTACCTGGTCGCTTAAATCAGACCTCCATGTTCGTAAAACGGGAAGGTTTGTATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTAACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATATCTTCCAAAGTTTGGAATAATAAAAAATAACTCCTTAAAAACTTAAACAAACTTATAATAATGATACCTCTAACAAAAATTTCGAAGTCTACACAAA Sirodotia_suecica_Isolate_South_Africa GCTATACCTGGTCGCCTAAATCAGACCTCCATGTTCGTAAAACGGGAAGGTCTGTACTATGGGCAATGTAGCGAAATTTGCGGGATAAATCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTAACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAAGTCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCCTTAATATCTTCCAAAGTTTGGAATAATAAAAAATAATTTCTTAGAAACTTAAATAAACTTATAATAATGATACCTCTAACAAAAATTTCGAAGTCTACACAAA Sirodotia_suecica_Isolate_South_Carolina_USA GCTGTACCTGGTCGTTTAAATCAGACCTCCATGTTCGTAAAACGGGAAGGTCTGTATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTGACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATGTCTTCCAAAGTTTGGAATAATAAAAAATAACTTCTTAAAAACTTAAACAAACTTATAATAATGA????????????????????????????????? Sirodotia_tenuissima_Isolate_Finland5 GCTGTACCTGGTCGCTTAAATCAGACCTCTATGTTCGTAAAACGGGAAGGTCTGTATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCTATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTAACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATGTCTTCCAAAGTTCGGAATAATAAAAAATAACTTCTTAAAAACTTAAACAAACTTATAATAATGATACCCCTAACAAAAATTTCGAAGTCTACACAAA Sirodotia_tenuissima_Isolate_Finland6 GCTGTACCTGGTCGCTTAAATCAGACCTCTATGTTCGTAAAACGGGAAGGTCTGTATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTAACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATGTCTTCCAAAGTTCGGAATAATAAAAAATAACTTCTTAAAAACTTAAACAAACTTATAATAATGATACCCCTAACAAAAATTTCGAAGTCTACACAAA Sirodotia_tenuissima_Isolate_Rhode_Island_USA GCTGTACCTGGTCGCTTAAATCAGACCTCCATGTTCGTAAAACGGGAAGGTTTGTATTATGGGCAATGTAGCGAAATTTGCGGGATAAACCATGGTTTTATGCCCATAGTAGTTGAAGCTGTAGCTTTGCCAAATTATGTAACTTGGATTTATAATAAATTGTGTACTCAGTAATGCGTCTTTCTATAACCCAACTTTTGATTATAACCGTTATATTTAGTGTCTTTTTTGTTAAAGCTGACTATTTTAGTCATTTTCTAGCAAAGTTGAACTCTTTAATATCTTCCAAAGTTTGGAATAATAAAAAATAACTCCTTAAAAACTTAAACAAACTTATAATAATGATACCTCTAACAAAAATTTCGAAGTCTACACAAA ; END; BEGIN TREES; Title 'ML trees from cox2-cox3 spacer data'; LINK Taxa = Taxa; TRANSLATE 1 Sirodotia_aff_huillensis_Isolate_South_Africa, 2 Sirodotia_delicatula_Genbank_AY780529, 3 Sirodotia_delicatula_Genbank_AY780535, 4 Sirodotia_goebelii_Isolate_Australia, 5 Sirodotia_huillensis_Genbank_AY780546, 6 Sirodotia_huillensis_Isolate_Arizona_USA, 7 Sirodotia_huillensis_Isolate_Texas_USA, 8 Sirodotia_suecica_Isolate_Australia, 9 Sirodotia_suecica_Isolate_Canada, 10 Sirodotia_suecica_Isolate_Finland1, 11 Sirodotia_suecica_Isolate_Finland2, 12 Sirodotia_suecica_Isolate_Finland3, 13 Sirodotia_suecica_Isolate_Finland4, 14 Sirodotia_suecica_Isolate_New_Zealand, 15 Sirodotia_suecica_Isolate_Rhode_Island_USA, 16 Sirodotia_suecica_Isolate_South_Africa, 17 Sirodotia_suecica_Isolate_South_Carolina_USA, 18 Sirodotia_tenuissima_Isolate_Finland5, 19 Sirodotia_tenuissima_Isolate_Finland6, 20 Sirodotia_tenuissima_Isolate_Rhode_Island_USA; TREE PAUP_1 = ((2:0.0,3:0.0):0.013368,((6:0.007119,(5:0.0,7:0.0):0.00134):0.07719,(1:0.048235,(9:0.0,(15:0.0,20:0.0,(16:0.027991,(17:0.005664,(4:0.0,8:0.00249,14:0.0):0.012801,(10:0.0,11:0.002507,12:0.0,13:0.0,18:0.002507,19:0.0):0.005076):0.005009):0.005205):0.002532):0.133736):5.066E-8):0.013368); TREE PAUP_2 = ((2:0.0,3:0.0):0.013368,(1:0.048235,((6:0.007119,(5:0.0,7:0.0):0.00134):0.07719,(9:0.0,(15:0.0,20:0.0,(16:0.027991,(17:0.005664,(4:0.0,8:0.00249,14:0.0):0.012801,(10:0.0,11:0.002507,12:0.0,13:0.0,18:0.002507,19:0.0):0.005076):0.005009):0.005205):0.002532):0.133736):1.016E-8):0.013368); TREE PAUP_3 = ((2:0.0,3:0.0):0.013368,(1:0.048235,(6:0.007119,(5:0.0,7:0.0):0.001341):0.077188,(9:0.0,(15:0.0,20:0.0,(16:0.027991,(17:0.005664,(4:0.0,8:0.00249,14:0.0):0.012801,(10:0.0,11:0.002507,12:0.0,13:0.0,18:0.002507,19:0.0):0.005076):0.005009):0.005205):0.002532):0.133735):0.013368); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 378; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 378; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 378; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1311963444375; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4470377368021194809; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6572144796336081704; mqVersion 274; checksumv 0 2 552942563 null getNumChars 378 numChars 378 getNumTaxa 20 numTaxa 20 short true bits 15 states 15 sumSquaresStatesOnly 197528.0 sumSquares 197528.0 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 236; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1024 656; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4470377368021194809 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4470377368021194809; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 265; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 788 589; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4470377368021194809 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 831.1311952820625.6297725589287169922; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 788 589; setLocation -4 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;