#NEXUS [written Thu Jun 14 16:36:44 EDT 2012 by Mesquite version 2.75 (build 564) at MININT-H5BITP6/10.0.1.196] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=49; TAXLABELS Hexagonia_hydnoides_AF163576_ Fomitopsis_meliae_HQ248221_ Polyporus_squamosus_DQ267123_ Fomes_fomentarius_EF155491 Fomes_fomentarius_DQ513402 Fomes_fomentarius_GQ184601 Fomes_fomentarius_GQ184600 Fomes_fomentarius__AY849306 Fomes_fomentarius__AY849305 Fomes_fomentarius_FN539045 Fomes_fomentarius_FN539043 Fomes_fomentarius_GQ184598 Fomes_fomentarius_GQ184597 Fomes_fomentarius_GQ184602 Fomes_fomentarius_GQ184604 Fomes_fomentarius_GQ184599 Fomes_fomentarius_FJ865442 Fomes_fomentarius_FJ865438 Fomes_fomentarius_FJ865443 Fomes_fomentarius_HQ189535 Fomes_fomentarius_FJ865441 Fomes_fomentarius_FJ865439 Fomes_fomentarius_GU062198 Fomes_fomentarius_FR686552 Fomes_fomentarius_AY354213 Fomes_fomentarius_HQ189534 Fomes_fomentarius_EF155495 Fomes_fomentarius_EF155494 Fomes_fomentarius_EF155492 Fomes_fomentarius_EF155497 Fomes_fomentarius_EF155498 Fomes_fomentarius_GQ184603 Fomes_fomentarius_FJ865440 Fomes_fomentarius_JX126886 Fomes_fomentarius_JX126891 Fomes_fomentarius_JX126892 Fomes_fomentarius_JX126893 Fomes_fomentarius_collapsed_C_28 Fomes_fomentarius_JX126890 Fomes_fomentarius_JX126889 Fomes_fomentarius_collapsed_T_14 Fomes_fomentarius_JX126887 Fomes_fomentarius_JX126888 Fomes_fomentarius_collapsed_Y_23 Fomes_sp_HM136871 Fomes_fasciatus_JX126900 Fomes_fasciatus__AM269766 Fomes_fasciatus_collapsed_C_3 Fomes_fasciatus_collapsed_S_5 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=587; FORMAT DATATYPE = DNA GAP = - MISSING = N; MATRIX Hexagonia_hydnoides_AF163576_ TTGTAGCTGGCCTCTAAC-----GAGGCATGTGCAC--ACCTGGGCTGTATCCACTGTCAACCTCTGTGCACTTTATGTAAGAAAC-----GGTGTAAGCCAGCTATTTAAT---AGGTTGGTAACAAGCGCTTTCTTGATGTTTACTACAAACG--CTTGAGTTATAGAA--TGTTTACTG---TGTAACACAATTAT-ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTG-ACTCCTTGGTATTCCGAGGAGTATGCCTGTTTGAGTCTCATGGAATTCTCAACCCCTAAA--TTTTGTAATGAAGTTTAGTGGGC-TTGGA-CTTGGAGGTTG--TGTCGGCTTCT------A----GTCGACTCCTCTGAAATGCATTAGCGTGAATC-TTACGGATCGCCT--CAGTGTGATAATTATCTGCGCTGTGG-TGTTGAAGTAT--TTATAGTTCATGCT--TAATAGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Fomitopsis_meliae_HQ248221_ TTGTTGCTGGCCGTCA-------GCGGCATGTGCAC-GCCCTGATCATTATCCATCTCACACACCTGTGCACACACTGTAGGTCGGTTTGTGGCTGGAGTGGGCACTCTGTGTCTGCTTTGGTTGTAGGCCTTCCTATGTTTTAT--TACAAACTACTTCAGTTTAAAGAATGTCACTCTTG-CGTCTAACGCATTTA-AATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTCGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGGAATTCTCAACTCTATTTGCTTCTGT---------GAATAGAGCTTGGA-CTTGGAGGTTTATTGCCGGTACACCTGTG------ATCGGCTCCTCTTGAATGCATTAGCTCGAACCTGTGTGGATCGGCTATCGGTGTGATAATTGTCTACGCCGTTGCTG-TGAAGCATGTTAATGGGATCGGCTTCTAATCGTCCTTTTACTTGGGGACAATGAC--TTTGACC Polyporus_squamosus_DQ267123_ TTGCAGCTGGTCTTAT-------CAGGCAAGTGCTC-GCCTCGTTCAA-ATCCACTCT--ACACCTGTGCACTTACTGTGGA---CTTTGGTATTTTTGGAGGGTCCTTTGGCCCTTTATGAATCCGGGT----TCATGTTTTATTATATATACGC-TTCAGTATTGAGAA--TGTGTATTGTGATGTAACGCATC-GTTATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACACCTGTTTGAGTGTCATGAAATTCTCAACCTTACAAACTTTTGT-----GTTTGATTTGGC-TTGGA-GTTGGAGGCTTGCTGATGGGAAATTCC--------TTTGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATTGGCTCCTGGTGTGATAAATGTTTACGCCGCAGCTGTTGAAGCGAT-TTGGG---CAAGCTCCTAACCGTCTCGATATTGAGAGACAGCTTT---TTGAAC Fomes_fomentarius_EF155491 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACANCTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGNACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TNGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGTCTTTCGGTGTGATAANGG--AACGCCGCACCCG-TGAAGCNT--TTGGN---TTTTCNTCTAATGN----GGGAANCAGAGNCAGCTTA--TATGAAC Fomes_fomentarius_DQ513402 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTTGGC---CCCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGGGTTGGCTTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_GQ184601 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAAACAGCTTT--TATGAAC Fomes_fomentarius_GQ184600 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCAATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius__AY849306 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGT-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius__AY849305 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGT-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_FN539045 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTGTTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_FN539043 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTGTTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_GQ184598 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTGTTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_GQ184597 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTGTTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_GQ184602 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_GQ184604 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_GQ184599 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_FJ865442 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_FJ865438 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_FJ865443 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_HQ189535 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_FJ865441 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_FJ865439 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG---ATTTCAGGTGCGTCG-----CTTTGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CTTTTGC-----GGGTTTGTAGGG-TTGGCTATTGGAGGCTTT-TGCTGGCCCTCGTTTGA-----GTCAGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_GU062198 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATCAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGA--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TNNNNNN Fomes_fomentarius_FR686552 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAATAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAARAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------KTCAGCTCCTCTTAAATGCATTAACTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGA--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_AY354213 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCC-CTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTA--TATGAAC Fomes_fomentarius_HQ189534 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCCCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGA--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_EF155495 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGA--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTA--TATGAAC Fomes_fomentarius_EF155494 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGA--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTA--TATGAAC Fomes_fomentarius_EF155492 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGA--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTA--TATGAAC Fomes_fomentarius_EF155497 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGA--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_EF155498 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGA--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_GQ184603 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGA--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_FJ865440 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTT-TGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCACCCG-TGAAGCGA--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_JX126886 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCARGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTTTTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGANN Fomes_fomentarius_JX126891 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAAGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTTTTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAA Fomes_fomentarius_JX126892 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTACAAA-CCTTTGC-----GGRTTTGTAGCG-TTGGATGTTGGAGGCTTTTTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_JX126893 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGGCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTACAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTTTTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_collapsed_C_28 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTACAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTTTTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_JX126890 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTTTTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GGGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_JX126889 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTTTTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GRGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_collapsed_T_14 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTTTTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_JX126887 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAYAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTTKTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_JX126888 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTRTTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAYAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTTTTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_fomentarius_collapsed_Y_23 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGG-----TTTCAGGTGCGTCG-----CCTCGCG---GCGGCGTCACTCGGC----CCACGTTTTCTT-TACAAACTA-TTGAAGTAACAGAA--TGTTTATTG--ATGTAACGCATCTATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTAYAAA-CCTTTGC-----GGGTTTGTAGCG-TTGGATGTTGGAGGCTTTTTGCTGGCCCA------------GTCAGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGTGGATCGGCTGTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGA----GAGCTTCTAATGGTCTCGTC----AGAGACAGCTTT--TATGAAC Fomes_sp_HM136871 TTGTAGCTGGCCTTCC-------GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG----TTTCAGGCGCGTCGCGAGTCTCCGTGCTCGAGGCGTTACTGGGC----CTACGTTTCAC--TACAAACTA-TTGAAGTAATAGAA--TGTGTATAGATGTTTAACGCATCAATAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATAAAGCTTTTGT-----GGTTTTATAGGA-TTGGA-CTTGGAGGCTT--TGTCGGCTGCTTGCA-------GTGGGCTCCTCTCAAATGTATTAGCTTGATTCCTTGCGGATCGGCTCTCGGTGTGATAA-TGTCTACGCCGCGACCG-TGAAGCGT--TTGGC----GAGCTTCTAGTCGTCTCATT----AGAGACAGCTTC--ATTGACC Fomes_fasciatus_JX126900 TTGTCGCTGGCCTTCTTTTTTTGGAGGCATGTGCACGGCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTATTGTGGG----TTTCAGGCGCGTCGCGGGCCTCCGTGCTCGAGGCGTTACTGGGC----CTACGTTTTCAC-TACAAACTA-TTGAAGTAACAGAATGTGTGTATAGATGTATAACGCATCAGTAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATGAAGCTTTTGT-----GGTTTTATAGAG-TTGGA-CTTGGAGGTTTT-TGCTGGCTTCATCCAATGAAGCGTTGGCTCCTCTTAAATGCATTAGCTCATTTCCTTGTGGAATGGTTCTCGGTGTGATAAATGTCTATGCCGTGGCCG-TGAAGCGCTGTTGGGGCCCGAGCTTCTAATTGTCTCTTTGTT--GAGACAGCTTTGAAATGACC Fomes_fasciatus__AM269766 TTGTCGCTGGCCTTCTTTTTTTGGAGGCATGTGCACGGCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTATTGTGGG----TTTCAGGCGCGTCGCGGGCCTCCGTGCTCGAGGCGTTACTGGGC----CTACGTTTTCAC-TACAAACTA-TTGAAGTAACAGAATGTGTGTATAGATGTATAACGCATCAGTAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATGAAGCTTTTGT-----GGTTTTATAGAG-TTGGA-CTTGGAGGTTTT-TGCTGGCTTCATCCAATGAAGCGTTGGCTCCTCTTAAATGCATTAGCTCATTTCCTTGTGGAATGGTTCTCGGTGTGATAAATGTCTATGCCGTGGCCG-TGAAGCGCTGTTGGGGCCCGAGCTTCTAATTGTCTCTTTGTT--GAGACAGCTTTGAAATGACC Fomes_fasciatus_collapsed_C_3 TTGTCGCTGGCCTTTTTTTG---GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG----TTTCAGGCGCGTCGCGGGCCTCCGTGCTCGAGGCGTTACTGGGC----CTACGTTTTCAC-TACAAACTA-TTGAAGTAACAGAA--TGTGTATGGATGTATAACGCATCAGTAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATGAAGCTTTTGT----GGGTTTTATAGAG-TTGGA-CTTGGAGGTTTT-TGCTGGCTTCATCCAATGAAGCGTTGGCTCCTCTTAAATGCATTAGCTCATTTCCTTGTGGAATGGTTCTCGGTGTGATAAATGTCTACGCCGTGGCCG-TGAAGCGCTGTTGGGGCCCGAGCTTCTAATTGTCTCTTTGTT-GAAGACAGCTTTGAAATGATC Fomes_fasciatus_collapsed_S_5 TTGTCGCTGGCCTTTTTTTG---GAGGCATGTGCAC-GCCCTGCTC---ATCCACTCT--ACACCTGTGCACTTACTGTGGG----TTTCAGGCGCGTCGCGGGCCTCCGTGCTCGAGGCGTTACTGGGC----CTACGTTTTCAC-TACAAACTA-TTGAAGTAACAGAA--TGTGTATGGATGTATAACGCATCAGTAATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATTCTCAACCTATGAAGCTTTTGT----GGGTTTTATAGAG-TTGGA-CTTGGAGGTTTT-TGCTGGCTTCATCCAATGAAGCGTTGGCTCCTCTTAAATGCATTAGCTCATTTCCTTGTGGAATGGTTCTCGGTGTGATAAATGTCTACGCCGTGGCCG-TGAAGCGCTGTTGGGGCCCGAGCTTCTAATTGTCTCTTTGTT-GAAGASAGCTTTGAAATGATC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 587; END; BEGIN TREES; Title 'Trees from "ITSwGenBank_49taxa_rooted_MPbootstrap.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Hexagonia_hydnoides_AF163576_, 2 Fomitopsis_meliae_HQ248221_, 3 Polyporus_squamosus_DQ267123_, 4 Fomes_fomentarius_EF155491, 5 Fomes_fomentarius_DQ513402, 6 Fomes_fomentarius_GQ184601, 7 Fomes_fomentarius_GQ184600, 8 Fomes_fomentarius__AY849306, 9 Fomes_fomentarius__AY849305, 10 Fomes_fomentarius_FN539045, 11 Fomes_fomentarius_FN539043, 12 Fomes_fomentarius_GQ184598, 13 Fomes_fomentarius_GQ184597, 14 Fomes_fomentarius_GQ184602, 15 Fomes_fomentarius_GQ184604, 16 Fomes_fomentarius_GQ184599, 17 Fomes_fomentarius_FJ865442, 18 Fomes_fomentarius_FJ865438, 19 Fomes_fomentarius_FJ865443, 20 Fomes_fomentarius_HQ189535, 21 Fomes_fomentarius_FJ865441, 22 Fomes_fomentarius_FJ865439, 23 Fomes_fomentarius_GU062198, 24 Fomes_fomentarius_FR686552, 25 Fomes_fomentarius_AY354213, 26 Fomes_fomentarius_HQ189534, 27 Fomes_fomentarius_EF155495, 28 Fomes_fomentarius_EF155494, 29 Fomes_fomentarius_EF155492, 30 Fomes_fomentarius_EF155497, 31 Fomes_fomentarius_EF155498, 32 Fomes_fomentarius_GQ184603, 33 Fomes_fomentarius_FJ865440, 34 Fomes_fomentarius_JX126886, 35 Fomes_fomentarius_JX126891, 36 Fomes_fomentarius_JX126892, 37 Fomes_fomentarius_JX126893, 38 Fomes_fomentarius_collapsed_C_28, 39 Fomes_fomentarius_JX126890, 40 Fomes_fomentarius_JX126889, 41 Fomes_fomentarius_collapsed_T_14, 42 Fomes_fomentarius_JX126887, 43 Fomes_fomentarius_JX126888, 44 Fomes_fomentarius_collapsed_Y_23, 45 Fomes_sp_HM136871, 46 Fomes_fasciatus_JX126900, 47 Fomes_fasciatus__AM269766, 48 Fomes_fasciatus_collapsed_C_3, 49 Fomes_fasciatus_collapsed_S_5; TREE PAUP_1 = (1:0.0,2:100.0,(3:100.0,((((4:100.0,23:100.0,24:100.0,25:100.0,26:100.0,27:100.0,28:100.0,29:100.0,30:100.0,31:100.0,32:100.0,33:100.0):90.13,(34:100.0,35:100.0,36:100.0,37:100.0,38:100.0,39:100.0,40:100.0,41:100.0,42:100.0,43:100.0,44:100.0):62.1):99.197,(5:100.0,6:100.0,7:100.0,8:100.0,9:100.0,(10:100.0,11:100.0,12:100.0,13:100.0):65.1,14:100.0,15:100.0,16:100.0,17:100.0,18:100.0,19:100.0,20:100.0,21:100.0,22:100.0):93.049):100.0,(45:100.0,((46:100.0,47:100.0):100.0,(48:100.0,49:100.0):99.767):100.0):81.579):84.82):94.874); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 587; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 587; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1339706204373; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 9190112602849853286; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5379143349274803396; mqVersion 275; checksumv 0 3 3440342222 null getNumChars 587 numChars 587 getNumTaxa 49 numTaxa 49 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 631354.0 sumSquares -1.3835058055282074E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #9190112602849853286 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #9190112602849853286; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #9190112602849853286 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 883.1339706091289.7200411807717972567; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.0,(2:100.0,(3:100.0,((45:100.0,((46:100.0,47:100.0):100.0,(48:100.0,49:100.0):99.767):100.0):81.579,((5:100.0,6:100.0,7:100.0,8:100.0,9:100.0,14:100.0,15:100.0,16:100.0,17:100.0,18:100.0,19:100.0,20:100.0,21:100.0,22:100.0,(10:100.0,11:100.0,12:100.0,13:100.0):65.1):93.049,((34:100.0,35:100.0,36:100.0,37:100.0,38:100.0,39:100.0,40:100.0,41:100.0,42:100.0,43:100.0,44:100.0):62.1,(4:100.0,23:100.0,24:100.0,25:100.0,26:100.0,27:100.0,28:100.0,29:100.0,30:100.0,31:100.0,32:100.0,33:100.0):90.13):99.197):100.0):84.82):94.874):0.0);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5379143349274803396 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 397; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;