#NEXUS [written Wed Jul 11 00:38:23 EDT 2012 by Mesquite version 2.75 (build 566) at Simba.local/10.0.1.39] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=53; TAXLABELS Nicotiana_velutina_1 Nicotiana_rotundifolia_1 Nicotiana_excelsior_1 Nicotiana_occidentalis_1 Nicotiana_debneyi_1 Nicotiana_maritima_1 Nicotiana_goodspeedii_1 Nicotiana_megalosiphon_1 Nicotiana_cavicola_1 Nicotiana_africana_1 Nicotiana_cordifolia Nicotiana_solanifolia Nicotiana_paniculata Nicotiana_knightiana Nicotiana_raimondii Nicotiana_benavidesii Nicotiana_thyrsiflora Nicotiana_undulata Nicotiana_plumbaginifolia Nicotiana_longiflora Nicotiana_acaulis Nicotiana_attenuata Nicotiana_petunioides Nicotiana_noctiflora Nicotiana_pauciflora Nicotiana_corymbosa Nicotiana_miersii Nicotiana_mutabilis Nicotiana_langsdorffii Nicotiana_forgetiana Nicotiana_bonariensis Nicotiana_alata Nicotiana_occidentalis_2 Nicotiana_megalosiphon_2 Nicotiana_velutina_2 Nicotiana_rotundifolia_2 Nicotiana_maritima_2 Nicotiana_goodspeedii_2 Nicotiana_excelsior_2 Nicotiana_cavicola_2 Nicotiana_forsteri_2 Nicotiana_africana_2 Nicotiana_sylvestris Nicotiana_obtusifolia_var._obtusifolia Nicotiana_obtusifolia_var._palmeri Nicotiana_tomentosiformis Nicotiana_tomentosa Nicotiana_otophora Nicotiana_kawakamii Nicotiana_glutinosa Symonanthus_aromaticus Anthocercis_viscosa Anthocercis_sylvicola ; END; BEGIN CHARACTERS; TITLE GS_5_alignment_diploids_and_sect_Suaveolentes; DIMENSIONS NCHAR=408; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Nicotiana_velutina_1 GTTATGCCAGGACAGGTACACTATTTGT-GTATTTT-TTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATCGAAGCTGGCAATCATATATGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGATTTA Nicotiana_rotundifolia_1 GTTATGCCAGGACAGGTACACTATTTGT-GTATTTT-TTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATCGAAGCTGGCGATCATATATGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGATTTA Nicotiana_excelsior_1 GTTATGCCAGGACAGGTACACTATTTGT-GTATTTT-TTTGTCTATTAT-GATAACATTACTTTCACTTATAGTCCTTCAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGCGATCATATCTGGTGTGCTAGGTACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATTATTTA Nicotiana_occidentalis_1 GTTATGCCAGGACAGGTACACTATTTGT-GTATTTT-TTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGCGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_debneyi_1 GTTATGCCAGGACAGGTACACTATTTGTTGTATTTTTTTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_maritima_1 GTTATGCCAGGACAGGTACACTATTTGTTGTATTTTTTTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTGTTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_goodspeedii_1 GTTATGCCAGGACAGGTACACTATTTGTTGTATTTTTTTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTGTTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_megalosiphon_1 GTTACGCCAGGACAGGTACACTATTTGTTGTATTTTTTTTGTCTATTAT-GATAACATCACTTTCACTTATAGTCCTTTAACTGGAGGATT---AACTTTGTTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATTTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_cavicola_1 GTTATGCCAGGACAGGTACACTATTTGTTGTATTTT-TTTGTCTATTAT-GATAACATCATTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGACAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAATCTTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_africana_1 GTTATGCCAGGACAGGCACAATATTTGTTATATTTT-TTTGTCTATTAC-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGCGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_cordifolia GTTATGCCAGGACAGGTACAATTTCCGCCACATCTC--TTGTCTATCAC-AGTAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCAATAGTTTA Nicotiana_solanifolia GTTATGCCAGGACAGGTACAATTTCCGCCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCCAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCAATAGTTTA Nicotiana_paniculata GTTATGCCAGGACAGGTACAATTTCCGCCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGCGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCACTAGTTTA Nicotiana_knightiana GTTATGCCAGGACAGGTACAATTTCTGCCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGCGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCAATAGTTTA Nicotiana_raimondii GTTATGCCAGGACAGGTACAATTTCCGCCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGCGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATATATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCAATAGTTTA Nicotiana_benavidesii GTTATGCCAGGACAGGTACAATTTCCGCCACATCTC--TTGTCTATCAC-AACAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGCGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTCACTGTTGCAATAGTTTA Nicotiana_thyrsiflora GTTATGCCTGGACAGGTACAATTTTCGCCACATTTC--TTGTCTACCAC-AATAACATCAC---CACTTATAGTCCGCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_undulata GTTATGCCAGGACAGGTACAATTTCCGTCACATCTC--TTGTCTATCAC-AATAACATCAC---CGCTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTTTGTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGTGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTTCAATGGTTTA Nicotiana_plumbaginifolia GTTATGCCAGGACAGGTACAATTTCTGTCACATCTC--TTGTCTATCAC-AATAACATCTCTGTCAGTTATAGTTCTCTAATTGGAGGATA---AACTTTATTGCTTTT-ATGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_longiflora GTTATGCCAGGACAGGTACAATTTCTGTCACATCTC--TTGTCTATCAC-AATAACATCTCTGTCAGTTATAGTTCTCTAATTGGAGGATA---AACTTTATTGCTTTT-ATGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_acaulis GTTATGCCAGGACAGGTACCGTTTTCGTCACATCTT--TTGTCTATCGC-AATAACATCATTGTCAGTTATAGTCCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_attenuata GTTATGCCGGGACAGGTACAATATTTGTTATATTTT-TTTGTCTATTAC-AATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGAGT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_petunioides GTTATGCCAGGACAGGTACAATATTTGTCACATTTT-TTTATCTATTAA-GATAACATCACTTTCACTTGTATTCCTTTAATTGGAGGATT---AATTTTATTGTTTTT-GTGGCAGTGGGAACTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGCGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGATTGTTGCAATGGTTTA Nicotiana_noctiflora GTTATGCCAGGACAGGTACAATATTTGTCACATTTT-TTTATCTATTAA-GATAACATCACTTTCACTTGTATTCCTTTAATTGGAGGATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGCGCCAGATACATCCTTGAGGTAAT-TTCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGATTGTTGAGATGGTTTA Nicotiana_pauciflora GTTATGCCGGGACAGGTACAATATTTGTTATATTTT-TTTGTCTATTAC-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGAGT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_corymbosa GTTATGCCGGGACAGGTACAATATTTGTTATATTTT-TTTGTCTATTAC-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGAGT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGCATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_miersii GTTATGCCGGGACAGGTGCAATATTTGTTATAT-----TTGTCTATTAC-GATAACATCACTTTCACTTATAGTCCTTTAATTGGAGGAGT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_mutabilis GTTATGCCAGGACAGATACAATTTCCGTCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_langsdorffii GTTATGCCAGGACAGGTACAATTTCTGTCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_forgetiana GTTATGCCAGGACAGGTACAATTTCCGTCACATCTC--TTGTCTATCAC-AATTACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_bonariensis GTTATGCCAGGACAGGTACAATTTCCGTCACATCTC--TTGTCTATCAC-AATTACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_alata GTTATGCCAGGACAGGTACAATTTCTGTCACATCTC--TTGTCTATCAC-AATAACATCAC---CACTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGCTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTA Nicotiana_occidentalis_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_megalosiphon_2 GTTATACCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_velutina_2 GTTATGCCAGGACAGGTACCATTTTCGCCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---GACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_rotundifolia_2 GTTATGCCAGGACAGGTACCATTTTCGCCACATCTT--TTGTGTATCAC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---GACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_maritima_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---GACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATTCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCGACTGTTGCAATGGTTTG Nicotiana_goodspeedii_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---GACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATTCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTCGACTGTTGCAATGGTTTG Nicotiana_excelsior_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCCATAATTGGAGAATT---GACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_cavicola_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGGCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_forsteri_2 GTTATGCCAGGACAGGTACCATTTTCGTCACATCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGACCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_africana_2 GTTATGCCAGGACAGGTACCATTTTCGTCGCGTCTT--TTGTGTATCTC-AATAACATCACTTTCAGTTATAGGCCTCTAATTGGAGAATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTCCAAGTGGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_sylvestris GTTATGCCAGGACAGGTACCATTTTCTTCACATCTT--TTGTCTATCAC-AATAACATCACTGTCAGTTATAGGCCTCTAATTGGAGAATT---AACTTTAATGTTTTT-GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGCGCCAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGGTTTG Nicotiana_obtusifolia_var._obtusifolia GTTATGCCAGGCCAGGTACCATTTTCGTCACATT----TTGTCTATCAC-AATAACATCACTGTCAGTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTCGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGATTTA Nicotiana_obtusifolia_var._palmeri GTTATGCCAGGCCAGGTACCATTTTCATCACATT----TTGTCTATCAC-AATAACATCACTGTCAGTTATAGTCCTCTAATTGGAGGATT---AACTTTATTGTTTTT-GTGGCAGTGGGAATTTCAAGTCGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGCAATGATTTA Nicotiana_tomentosiformis GTTATGCCAGGACAGGTACCATATTCGTCACATCTC--TTGTCTAATAC-AATAACATCACTGTCACTTATAGTCCTCTAATTGGAGGATT---AACTAAATT-TTTT--GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGAAATGGTTTA Nicotiana_tomentosa GTTACGCCAGGACAGGTACCATATTCGTCACATCTC--TTGTCTAATAC-AATAACATCACTGTCACTTATAGTCCTCTAATTGGAGGATT---AACTAAATT-TTTT--GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGAAATGGTTTA Nicotiana_otophora GTTATGCCAGGACAGGTACCATATTCATCACATCTC--TTGTCTAATAC-AATATCATCACTGTCACTTATAGTCCTCTAATTGGAGGATT---AACTAAATT-TTTT--GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTATGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGAAATGGTTTA Nicotiana_kawakamii GTTATGCCAGGACAGGTACCATATTCGTCACATCTC--TTGTCTAATAC-AATAACATCACTGTCACTTATAGTCCTCTAATTGGAGGATT---AACTAAATT-TTTT--GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGAAATGGTTTA Nicotiana_glutinosa GTTATGCCAGGACAGGTACCATATTTGTCACATCTC--TTGTCTAATAC-AATAACATCACTGTCACTTATAGTCCTCTAATTGGAGAATT---AACTAAATT-TTTG--GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCGGGAGATCACATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTTTGACTGTTGAAATGGTTTA Symonanthus_aromaticus GTTATGCCAGGGCAGGTATCGTTTTCGTCACATCCG--TTGTCTAACAG-ACTAACATCACTGTCAGTTATAGTCCTCTAATTGGAGGATT---AACTAAATTATTT---GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCATATCTGGTGTGCTAGATACATCCTTGAGGTAAT-TTTCTTCCCAAACCTGCATAAATGCCTTTGCAGGAAAGGGCATCTAGCCAGCATATAATCCTAATTGAACTAATGA--TACTTGAATACCTCAAATTATGATATCCCC-TAAGTCCAGCATGCAACTCATCAA-CTATGCTCTAGGACCTAGTGGGCATGAAATGAGAGTTATTACCTAAATTAGTTCCTCTGATCGTTGCAATGGTTTA Anthocercis_viscosa GTTATGCCAGGGCAGGTACCATTTTCGTCACATCTC--TTGTCTAATAATAGTAACATCACTGTCAGTTATAGTCCTCTAATTGGAGGATT---CCCTATATTGCTT---GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTAGAGGTAAT-TTTCTTCCCAAATCTGCATAAATGCCTTTGCAGGAAAGGTCATCTGGCGAGCATATAATCCTAATTCAACTAATGATATACTTGAATAACTCAAATAATGATATCTCCCTAAGTCCAGCATGCACCTTATCAAATTTTGCTCTAGGTCCTAG----------------------------------TCCCTTGACTGTGGCAATGGTTTA Anthocercis_sylvicola GTTATGCCAGGGCAGGTACCATTTTCGTCACATCTC--TTGTCTAATAATAGTAACATCACTGTCAGTTATAGTCCTCTAATTGGAGGATT---CCCTATATTGCTT---GTGGCAGTGGGAATTTCAAGTAGGTCCTAGTGTGGGAATTGAAGCTGGAGATCACATCTGGTGTGCTAGATACATCCTAGAGGTAAT-TTTCTTCCCAAATCTGCATAAATGCCTTTGCAGGAAAGGTCATCTGGCGAGCATACAATCCTAATTCAACTAATGATATACTTGAATAACTCAAATAATGATATCTCC-TAAGTCCAGCATGCACCTTATCAAATTCTGTTCTAGGTCCTAG----------------------------------TCCCTTGACTGTTGCAATGGTTTA ; END; BEGIN TREES; Title GS_5_alignment_diploids_and_sect_Suaveolentes; LINK Taxa = Taxa; TRANSLATE 1 Nicotiana_velutina_1, 2 Nicotiana_rotundifolia_1, 3 Nicotiana_excelsior_1, 4 Nicotiana_occidentalis_1, 5 Nicotiana_debneyi_1, 6 Nicotiana_maritima_1, 7 Nicotiana_goodspeedii_1, 8 Nicotiana_megalosiphon_1, 9 Nicotiana_cavicola_1, 10 Nicotiana_africana_1, 11 Nicotiana_cordifolia, 12 Nicotiana_solanifolia, 13 Nicotiana_paniculata, 14 Nicotiana_knightiana, 15 Nicotiana_raimondii, 16 Nicotiana_benavidesii, 17 Nicotiana_thyrsiflora, 18 Nicotiana_undulata, 19 Nicotiana_plumbaginifolia, 20 Nicotiana_longiflora, 21 Nicotiana_acaulis, 22 Nicotiana_attenuata, 23 Nicotiana_petunioides, 24 Nicotiana_noctiflora, 25 Nicotiana_pauciflora, 26 Nicotiana_corymbosa, 27 Nicotiana_miersii, 28 Nicotiana_mutabilis, 29 Nicotiana_langsdorffii, 30 Nicotiana_forgetiana, 31 Nicotiana_bonariensis, 32 Nicotiana_alata, 33 Nicotiana_occidentalis_2, 34 Nicotiana_megalosiphon_2, 35 Nicotiana_velutina_2, 36 Nicotiana_rotundifolia_2, 37 Nicotiana_maritima_2, 38 Nicotiana_goodspeedii_2, 39 Nicotiana_excelsior_2, 40 Nicotiana_cavicola_2, 41 Nicotiana_forsteri_2, 42 Nicotiana_africana_2, 43 Nicotiana_sylvestris, 44 Nicotiana_obtusifolia_var._obtusifolia, 45 Nicotiana_obtusifolia_var._palmeri, 46 Nicotiana_tomentosiformis, 47 Nicotiana_tomentosa, 48 Nicotiana_otophora, 49 Nicotiana_kawakamii, 50 Nicotiana_glutinosa, 51 Symonanthus_aromaticus, 52 Anthocercis_viscosa, 53 Anthocercis_sylvicola; TREE con_all_compat = (1:0.0075,2:0.003233,(3:0.022035,(4:0.003213,(5:0.003103,(((6:0.00311,7:0.003095):0.003339,8:0.012041):0.007502,(9:0.011692,((10:0.011971,(((22:0.007533,27:0.007702):0.003083,26:0.007576):0.003152,25:0.003101):0.012209):0.004246,(((((((11:0.011889,12:0.00738):0.003325,(13:0.007423,(14:0.007482,(15:0.007395,16:0.007352):0.003161):0.003237):0.007357):0.014043,17:0.025492):0.007262,((18:0.016421,28:0.007385):0.003151,(30:0.003156,31:0.003112):0.007501):0.003076):0.004471,((19:0.00308,20:0.003055):0.025518,(29:0.003164,32:0.003128):0.003963):0.00682):0.011648,(((21:0.02548,(((((33:0.003031,40:0.007426):0.003095,(34:0.007388,41:0.007393):0.003033):0.003058,42:0.016434):0.003981,(((35:0.003103,36:0.007443):0.007454,(37:0.003027,38:0.003062):0.01183):0.003416,39:0.012043):0.007332):0.021376,43:0.016466):0.018231):0.010582,(44:0.003087,45:0.007334):0.024382):0.006958,(((((46:0.003033,47:0.007446):0.003101,(49:0.003059,50:0.016457):0.003072):0.003104,48:0.016303):0.026001,51:0.057859):0.008468,(52:0.007291,53:0.003092):0.040252):0.015038):0.015783):0.043048,(23:0.01236,24:0.01656):0.041636):0.011941):0.025038):0.004455):0.003172):0.007641):0.007544):0.012699); END; BEGIN SETS; CHARSET excluded = 204 - 384; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 408; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 408; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 408; END; begin paup; exclude 204 -384; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1341981504054; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2043296068402848431; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7187501039207052002; mqVersion 275; checksumv 0 3 4251506352 null getNumChars 408 numChars 408 getNumTaxa 53 numTaxa 53 short true bits 15 states 15 sumSquaresStatesOnly 335835.0 sumSquares 335835.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 261; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;