NEXUS
[File created by TreeBASE:  7/26/07  21:08:41]
[Matrix accession#: M2331]

BEGIN TAXA;
	TITLE M2331;
	DIMENSIONS  NTAX=13;
	TAXLABELS
		Corytophanes_hernandezi	Corytophanes_percarinatus	Corytophanes_cristatus	Laemanctus_serratus	Laemanctus_longipes	Basiliscus_plumifrons	Basiliscus_galeritus	Basiliscus_vittatus	Basiliscus_basiliscus	Polychrus_acutirostris	Tropidurus_etheridgei	Sauromalus_obesus	Elgaria_panamintina
	;
END;

BEGIN CHARACTERS;
	TITLE M2331;
	DIMENSIONS NCHAR=32;
	FORMAT SYMBOLS = " 0 1 2 3 4 5 6 " MISSING = ? GAP = - ;
	CHARSTATELABELS
		1 Acrosome_complex_ridge / absent unilateral bilateral, 2 'Acrosome complex unilateral electron-lucent space' / absent present, 3 Acrosome_radial_aspect_of_subacrosomal_cone_in_transverse_section / absent present, 4 'Acrosome complex ridge at the epinuclear electron lucent zone level (or acrosome' / poorly_developed well_developed, 5 Epinuclear_lucent_zone_aspect / entire fragmented, 6 Perforatorium_base_plate / absent knoblike stopperlike, 7 Nucleus_lacunae / absent present, 8 Nuclear_fossa / shallow deep, 9 Neck_region_stratified_laminar_structure / bilateral 'bilateral and well-developed', 10 Neck_region_electron_dense_structure_inside_the_proximal_centriole / absent present, 11 Midpiece_beginning_of_the_fibrous_sheath_in_the_midpiece / not_applicable 'level of mitochondria tier 1-2' 'tier 2-3' 'tier 3-4' at__ring_structure_2 at_ring_structure_3, 12 Midpiece_fibers_3_and_8 / grossly_enlarged not_grossly_enlarged, 13 Midpiece_number_of_sets_of_mitochondria_and_ring_structures / not_applicable 3. 4. 5. 6., 14 Midpiece_mitochondria_in_oblique_section / columnar slightly_curved rounded, 15 Midpiece_mitochondrial_shape_in_longitudinal_section / trapezoidal rounded_ends totally_round, 16 Midpiece_dense_bodies / solid granulated, 17 Midpiece_dense_bodies_forming_ring_structures / not_applicable absent present, 18 Midpiece_appearance_of_dense_bodies_in_the_ring_structures_in_oblique_section / not_applicable 'fused, forming compact structures' not_fused, 19 Principal_piece_fibers_3_and_8_at_the_anteriormost_region / absent present, 20 Head_length / 0. 1. 2. 3. 4. 5. 6., 21 MP_length / 0. 1. 2. 3. 4. 5. 6., 22 Tail_length / 0. 1. 2. 3. 4. 5. 6., 23 Total_length / 0. 1. 2. 3. 4. 5. 6., 24 Acros_length / 0. 1. 2. 3. 4. 5. 6., 25 ETL / 0. 1. 2. 3. 4. 5. 6., 26 ETW / 0. 1. 2. 3. 4. 5. 6., 27 NRL / 0. 1. 2. 3. 4. 5. 6., 28 NSW / 0. 1. 2. 3. 4. 5. 6., 29 NBW / 0. 1. 2. 3. 4. 5. 6., 30 DCL / 0. 1. 2. 3. 4. 5. 6., 31 Nuclear_length / 0. 1. 2. 3. 4. 5. 6., 	32 MPOFS / 0. 1. 2. 3. 4. 5. 6.
	;
	MATRIX
		Corytophanes_hernandezi         ????????????????????????????????
		Corytophanes_percarinatus       ????????????????????????????????
		Corytophanes_cristatus          20011011014011112116666666666666
		Laemanctus_serratus             ????????????????????????????????
		Laemanctus_longipes             20011011014011112115555555555555
		Basiliscus_plumifrons           ????????????????????????????????
		Basiliscus_galeritus            ????????????????????????????????
		Basiliscus_vittatus             20011011004011112114444444444444
		Basiliscus_basiliscus           ????????????????????????????????
		Polychrus_acutirostris          10010110004121111103333333333333
		Tropidurus_etheridgei           11010010012111102112222222222222
		Sauromalus_obesus               10110100012121102111111111111111
		Elgaria_panamintina             11100210114030002200000000000000
	;
END;

BEGIN ASSUMPTIONS;
CHARSET Sperm = 1 - 4 6 - 32 ; 
 USERTYPE Head_length STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 528 471 528 461 417 372 
 528 . 999 0 67 111 156 
 471 999 . 999 932 888 843 
 528 0 999 . 67 111 156 
 461 67 932 67 . 44 89 
 417 111 888 111 44 . 45 
 372 156 843 156 89 45 . 
 ; 
 
 USERTYPE MP_length STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 145 751 248 514 424 424 
 145 . 606 393 369 279 279 
 751 606 . 999 237 327 327 
 248 393 999 . 762 672 672 
 514 369 237 762 . 90 90 
 424 279 327 672 90 . 0 
 424 279 327 672 90 0 . 
 ; 
 
 USERTYPE Tail_length STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 141 666 371 571 858 778 
 141 . 807 512 712 999 919 
 666 807 . 295 95 192 112 
 371 512 295 . 200 487 407 
 571 712 95 200 . 287 207 
 858 999 192 487 287 . 80 
 778 919 112 407 207 80 . 
 ; 
 
 USERTYPE Acros_length STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 999 567 711 734 846 764 
 999 . 432 288 265 153 235 
 567 432 . 144 167 279 197 
 711 288 144 . 23 135 53 
 734 265 167 23 . 112 30 
 846 153 279 135 112 . 82 
 764 235 197 53 30 82 . 
 ; 
 
 USERTYPE Total_length STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 117 709 345 599 882 823 
 117 . 826 462 716 999 940 
 709 826 . 364 110 173 114 
 345 462 364 . 254 537 478 
 599 716 110 254 . 283 224 
 882 999 173 537 283 . 59 
 823 940 114 478 224 59 . 
 ; 
 
 USERTYPE ETL STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 921 999 440 513 382 868 
 921 . 78 481 408 539 53 
 999 78 . 559 486 617 131 
 440 481 559 . 73 58 428 
 513 408 486 73 . 131 355 
 382 539 617 58 131 . 486 
 868 53 131 428 355 486 . 
 ; 
 
 USERTYPE ETW STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 601 362 113 999 631 872 
 601 . 239 488 398 30 271 
 362 239 . 249 637 269 510 
 113 488 249 . 886 518 759 
 999 398 637 886 . 368 127 
 631 30 269 518 368 . 241 
 872 271 510 759 127 241 . 
 ; 
 
 USERTYPE NRL STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 927 493 792 780 999 823 
 927 . 434 135 147 72 104 
 493 434 . 299 287 506 330 
 792 135 299 . 12 207 31 
 780 147 287 12 . 219 43 
 999 72 506 207 219 . 176 
 823 104 330 31 43 176 . 
 ; 
 
 USERTYPE NSW STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 31 215 214 999 596 620 
 31 . 184 183 968 565 589 
 215 184 . 1 784 381 405 
 214 183 1 . 785 382 406 
 999 968 784 785 . 403 379 
 596 565 381 382 403 . 24 
 620 589 405 406 379 24 . 
 ; 
 
 USERTYPE NBW STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 584 780 999 861 644 869 
 584 . 196 415 277 60 285 
 780 196 . 219 81 136 89 
 999 415 219 . 138 355 130 
 861 277 81 138 . 217 8 
 644 60 136 355 217 . 225 
 869 285 89 130 8 225 . 
 ; 
 
 USERTYPE DCL STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 654 215 229 228 235 345 
 654 . 869 883 882 889 999 
 215 869 . 14 13 20 130 
 229 883 14 . 1 6 116 
 228 882 13 1 . 7 117 
 235 889 20 6 7 . 110 
 345 999 130 116 117 110 . 
 ; 
 
 USERTYPE Nuclear_length STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 845 163 999 579 747 571 
 845 . 682 154 266 98 274 
 163 682 . 836 416 584 408 
 999 154 836 . 420 252 428 
 579 266 416 420 . 168 8 
 747 98 584 252 168 . 176 
 571 274 408 428 8 176 . 
 ; 
 
 USERTYPE MPOFS STEPMATRIX = 7 
 0 1 2 3 4 5 6 
 . 999 809 255 680 685 478 
 999 . 190 744 319 314 521 
 809 190 . 554 129 124 331 
 255 744 554 . 425 430 223 
 680 319 129 425 . 5 202 
 685 314 124 430 5 . 207 
 478 521 331 223 202 207 . 
 ; 
 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 TYPESET * UNTITLED = unord: 1 - 12 14 - 19 , ord: 13 , Head_length: 20 , MP_length: 21 , Tail_length: 22 , Acros_length: 24 , Total_length: 23 , ETL: 25 , ETW: 26 , NRL: 27 , NSW: 28 , NBW: 29 , DCL: 30 , Nuclear_length: 31 , MPOFS: 32 ; 
 WTSET * UNTITLED = 999: 1 - 19 , 1: 20 - 32 ; 
 END;