#NEXUS [written Mon Mar 11 12:10:14 HST 2013 by Mesquite version 2.75 (build 564) at dhcp-128-171-206-139.stjohn.hawaii.edu/128.171.206.139] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=9; TAXLABELS Fusarium_fujikuroi Fusarium_verticillioides Fusarium_oxysporum Botrytis_tulipae Botrytis_elliptica Botrytis_hyacinthi Botrytis_cinerea_T4 Botrytis_cinerea_B05.10 Aspergillus_carbonarius ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "phylo_bik6_final.nxs"'; DIMENSIONS NCHAR=1497; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Fusarium_fujikuroi ATGAACGAACCCGCGGAAGAGTCCAACATGGGTGTC------GTCAAGGAAGAAGCCCAATTG------------------------------------GGCGATATAGTCGACTTCGAGGGAGACTCCGACACGCTCAACCCCCAGAACTGGCCCATGGGGAAGAAGGTCTACACGACAGCCCTGTGGGCCCTGACTACGTGCTGGATCACCTTCGCCTCCGCCATCTACTCGGCCGGCACAGCAGAGATTAGCCAGGAGTTCCATGTGTCGTACGAGGTAGCCAACGCGGGCACCAGTCTGCTCATTTTCGGCTTCGCCCTTGGACCCATGCTCTGGGCGCCTCTTTGCGAGGTTTACGGTCGGAAATGGCCTGCTCTCGCTCCCTATTTCATTAGCGCAGCTTTCGCCTTCGGCACTGCGACCGCCAAGGATATCCAGACAATCCTGATTACAAGGTTCTTCGCTGGCGTCTTCGGCAGCTCCCCCATCTCCATCACGGGCGGCTCCATCGTTGACATCTGGACCCCACGCCAGCGGGGCACTCCCATGGTGTGTTACGGCATCACCATCGCTGCGGCGCCGACCCTGGGGCCTATCATAGGCGGCGCCTTTATCGCGAGCGGCTGCGGCTGGCGCTGGACCGAGTACCTGACGGGCATCGTCATGATGGTCCAGTTCGTCCTAGACGCCTTGTGGCTAGACGAGAGCCACGCTGACGTGCTTCTCACACGGAAGGCCAGCCGGCTCCGTCGGTCTACGGGGAATTTCAGTCTCCACGCTAAGTGGGAGGAGACTAGCCCAACGTTCAAGAGTTTACTGAGTACCTACCTTGTCCGCCCGTTTCAGATGCTTCTGGATCCAATCTGCCTGCTGCTTACGATCTATACCTCTTTCGTCTATGCAATCCTTTACGCGAGTTTAGAGAGTTTCGCCTTGGAATACGGCCGGTTCCGAGGATGGGGCCCAGTCGTCAGCCAGCTTCCCTTTCTGTCCCTCTTAATTGGCTGTCTCTTTGCCGCCGCCGCCAACATCTTCAACAACATCTATTACGGAAAGAAGCTCGTCGCCAACCACTTCAAGCCTGTTCCTGAAGCGAGACTTCCACCAATGATGGTGGGCGGATTCGCCTTCTCTGCAGGTCTTTTCCTTTTTGGCTGGACCTCGGTTGAGCACGTCTCGAGCCCTTGGCCATCCATCATCGGTGTCTTCCTTACAGGGGTGGGCTTCACCACCATCTTCCAATCGTCCCTCCAGTATCTCGTTGATACTTTTACTCGCTACAGTGCTAGCGCTATTGCGGCTAACACTTTTGTCCGATCCATGGCTGCAGGTGCTTTCCCTCTCTTTGTCTGGCCCATGTATGAAAAGATCGGCATCGATTGGGGCAGCACTATTTTTGCCTGCATTAGCGTGCTTCTGCTGCCAGCTCCCTTCCTCTTTTTCAAATGGGGTTATCGGATCAGGGCCCGTGGCGAATTCAGCAAGCTCTCGACC Fusarium_verticillioides ATGAGCGAA---------CAGTTCAACATGGGT---------AAGGAGGAGGAAGCGCAGTCG------------------------------------GGCGACGTGGTCGACTTTGAGGGAGACTCCGACACCCACAACCCGCAGAACTGGCCCATGGGGAAAAAGGTGTATACGACAGCCCTGTGGGCCCTGACTACCTGCTGGATTACCTTTGCCTCCGCCATTTACTCGGCCGGCACAGCAGAGATCAGTGAGGAGTTCCATGTGTCGTACGAGGTGGCCAACGCGGGCACCAGTCTGCTCATTTTCGGGTTTGCTCTGGGACCCATGCTCTGGGCACCCTTGTGCGAGGTTTACGGCCGGAAATGGCCTGCTCTCGCTCCCTATTTCATTAGCGCAGCCTTCGCCTTCGGCACTGCGACCGCCAAGGACATCCAGACAATCCTAATAACAAGGTTCTTCGCCGGCGTGTTCGGCAGCTCCCCCATCTCCATTACAGGCGGTTCCATTGTCGACATCTGGACCCCACGCCAGCGGGGCACCCCCATGGTCTGCTACGGCATCACCATCGCTGCGGCGCCGACCCTGGGGCCTATCATCGGCGGCGCCTTTATCGCGAGCGGCTGCGGCTGGCGCTGGACCGAGTACCTTACCGGTATCGTCATGATGGTCCAGTTCGTCCTAGACGCCTTGTGGCTAGACGAGAGCCACGCTGACGTGCTTCTCACTCGCAAGGCAGGCCGCCTCCGTCGGTCTACGGGGAATTTCAGTCTCCACGCTAAGTGGGAGGAGACTAGCCCAACGTTCAAGAGTCTGCTGAGTACCTACCTTGTCCGACCGTTTCAGATGCTTCTGGATCCAATCTGCCTCCTGCTTACGATCTATACCTCTTTCGTCTATGCAATCCTTTACGCGAGCTTGGAGAGTTTCGCCTTAGAATACGGCCGGTTCCGAGGATGGGGCCCCGTAGTGAGCCAGCTTCCCTTCCTGTCGCTGTTAATTGGCTGTCTCTTTGCCGCGGCGGCCAACATCTTCAACAACATCTATTACGGAAAGAAGCTCGTCGCCAACAACTTCAAGCCTGTTCCTGAAGCGAGACTTCCACCAATGATGGTGGGCGGCTTCGCCTTTTCTGCAGGTCTTTTCCTTTTTGGCTGGACCTCGGTCGAGCACGTCTCTAGCCCATGGCCGTCCATCATTGGCGTCTTCCTCACAGGGGTTGGCTTCACCACCATCTTCCAGTCGTCTCTCCAGTATCTAGTCGACACCTTCACCCGCTACAGTGCTAGCGCTATTGCGGCTAACACTTTTGTCCGATCCATGGCTGCAGGTGCCTTTCCTCTCTTCGTCTGGCCCATGTATGAAAAGATCGGCATCGATTGGGGGAGCACTATCTTTGCCTGCATTAGCGTGCTTCTGCTGCCAGCTCCCTTCCTCTTTTTCAAATGGGGTTATCGGATCAGGGCCCGTGGCGAATTCAGCAAGCTCTCGACC Fusarium_oxysporum ATGAACGAA---------GAGTCCAACATGGGTGGTGTCTTCAAGGAAGAGGAAGCGCAATCG------------------------------------GGCGACGTGGTCGACTTTGAGGGAGACTCCGACACCCACAACCCGCAGAACTGGCCCATGGGGAAAAAGGTGTATACGACAGCCCTGTGGGCCCTGACTACCTGCTGGACCACCTTCGCCTCCGCCATCTACTCCGCCGGCACAGCAGAGATTAGTGAGGAGTTCCATGTGTCGTACGAGGTAGCCAACGCGGGCACCAGTCTGCTCATCTTCGGGTTTGCCCTCGGACCCATGCTCTGGGCGCCTCTGTGTGAGGTTTACGGTCGTAAATGGCCTGCTCTCGCTCCCTATTTCATTAGCGCAGCCTTCTCCTTCGGCACTGCGACCGCCAAGGATATCCAGACTATCCTAATTACAAGGTTCTTCGCCGGCGTCTTCGGCAGCTCCCCCATCTCCATCACAGGCGGTTCCATCGTCGACATCTGGACCCCACGCCAGCGGGGCACCCCCATGGTCTGCTACGGCATCACCATCGCTGCGGCCCCGACCCTGGGACCTATCATCGGCGGCGCCTTTATCGCCAGCGGCTGCGGCTGGCGCTGGACCGAGTACCTTACCGGTATCGTCATGATGGTCCAGTTCGTCCTAGACGCCTTGTGGCTAGACGAGAGCCACGCTGACGTGCTTCTCACTCGCAAGGCAGGCCGCCTCCGTCGGTCTACGGGGAATTTCAGTCTCCACGCTAAGTGGGAGGAGACTAGCCCTACGTTCAAGAGTCTACTGAGTACCTACCTTGTCCGCCCGTTTCAGATGCTTCTGGATCCCATCTGCTTACTGCTCACGATCTATACCTCTTTCGTCTATGCCATCCTTTACGCGAGCTTGGAGAGTTTCGCTCTCGAATACGGCCGGTTCCGAAGATGGGGCCCCGTCGTGAGCCAGCTTCCCTTCCTGTCGCTCTTCATTGGCTGTCTCTTTGCCGCCGCGGCCAACATCTTCAACAACATCTATTACGGAAAGAAGCTCGTCGCCAACAACTTCARGCCTGTTCCTGAAGCGAGACTTCCACCAATGATGGTGGGCGGGTTCGCCTTCTCTGCAGGTCTTTTCCTTTTTGGCTGGACCTCGGTTGAGCACGTCTCTAGCCCATGGCCATCCATCATTGGCGTCTTCCTTACTGGGGTTGGCTTCACCACCATCTTCCAATCGTCCCTCCAGTATCTCGTCGATACTTTCACCCGCTACAGTGCTAGCGCTATTGCGGCTAATACTTTTGTCCGATCCATGGCTGCAGGTGCTTTCCCTCTCTTTGTCTGGCCCATGTATGAAAAGATCGGCATCGATTGGGGGAGCACTATCTTTGCCTGCATTAGCGTGCTTCTGCTGCCAGCTCCATTCCTCTTTTTCAAATGGGGTTATCGGATCAGGGCCCGTGGCGAATTCAGCAAGCTATCAACC Botrytis_tulipae ATGAACGAAACCGCGGAAGATTCCAACATGGGTGTC---------AAACAAGAAGCCCAATTG------------------------------------GGCGATATAGTCAACTTCGAGGGAGACTCCGACACGCTCAACCCCCAGAACTGGCCCATGAGGAAAAAGGTCTACACGACAGCCCTGTGGGCCCTGACTACGTGCTGGATCACCTTCGCCTCCGCCATCTACTCGGCCGGCACAGCAGAGATTGCCCAGGAATTCCATGTGTCATACGAGGTAGCCAACGCGGGGACCAGTCTGCTCATTTTCGGCTTCGCCCTTGGACCCATGCTCTGGGCGCCTCTGTGCGAGGTTTACGGTCGGAAATGGCCTGCTCTCGCTCCCTATTTCATTAGCGCAGCTTTCGCCTTCGGCACTGCGACCGCCAAGGATATCCAGACAATCCTAATAACAAGGTTTCTCGCTGGCGTCTTCGGCAGCTCACCCATCTCCATCACGGGCGGCTCCATCGTTGACATCTGGAACCCACGCCAGCGGGGCACTCCCATGGTGTGCTACGGCATCACCATCGCCGCGGCGCCGACCCTAGGCCCTATCATCGGCGGCGCCTTTATCACGAGCGGCTGCGGCTGGCGCTGGACCGAGTACCTGACGGGCATCGTCATGATGGTCCAGTTCGTCCTAGACGCCTTCTGGCTAGACGAGAGCCACGCTGAAGTGCTTCTCACGCGGAAGGCCAGCCTCCTCCGTCGGTCTACGGGGAATTTTAGTCTCCACGCTAAGTGGGAGGAGACTAGCCCAACGTTCAAGAGTTTACTGAGTACCTACCTTGTTCGACCGTTTCAGATGCTCCTGGATCCAATCTGCCTGCTGCTTACGATCTATACCTCTTTCGTCTATGCAATCCTTTACGCGAGCTTAGAGAGTTTCGCTCTCGAATACGGCCGGTTCCGAGGATGGGGCCCCGTCGTGAGCCAGCTTCCCTTTCTGTCCCTCTTAATTGGCTGTCTCTTTGCCGCCGCCGCCAACATCTTCAACAACATCTATTACGGAAAGAAGCTCGTTGCCAACAACTTCAAGCCTGTTCCTGAAGCGAGACTTCCACCAATGATGGTGGGCGGATTCGCCTTCTCTTCAGGTCTTTTCCTTTTTGGCGGGACCTCGGTTGGGCACGTCTTGAGCCCTTGGCCATCCATCATCGGTGTCTTCCTTACAGGGGTTGGCTTCACCACCATCTTCCAATCGTCCCTCCAGTATCTCGTCGATACTTTTACGCGCTACAGTGCTAGCGCTATTGCGGCTAACACTTTTGTCCGATCCATGGCTGCAGGTGCTTTTCCTCTCTTTGTCTGGCCCATGTATGAAAAGATCGGCATCGATTGGGGCAGCACTATCTTTGCCTGCATTAGTGTGCTTCTGCTGCCAGCTCCGTTCCTCTTTTTCAAATGGGGTTATCGGATCAGGGCCCGTGGCGAATTCAGCAAGCTCTCGACC Botrytis_elliptica ATGAACGAAACCGCGGAAGAGTC-AACATGGGTGTC---------AAACAAGAAGCCCAATTG------------------------------------GGCGATATAGTCAACTTCGAGGGAGACTCCGACACGCTCAACCCCCAGAACTGGCCCATGAGGAAAAAGGTCTACACGACAGCCCTGTGGGCCCTGACTACGTGCTGGATCACCTTCGCCTCCGCCATCTACTCGGCCGGCACAGCAGAGATTGCCCAGGAATTCCATGTGTCATACGAGGTAGCCAACGCGGGGACCAGTCTGCTCATTTTCGGCTTCGCCCTTGGACCCATGCTCTGGGCGCCTCTGTGCGAGGTTTACGGTCGGAAATGGCCTGCTCTCGCTCCCTATTTCATTAGCGCAGCTTTCGCCTTCGGCACTGCGAACGCCAAGGATATCCAGACAATCCTAATAACAAGGTTTCTCGCTGGCGTCTTCGGCAGCTCACCCATCTCCATCACGGGCGGCTCCATCATTGACATCTGGACCCCACGCCAGCGGGGCACTCCCATGGTGTGCTACGGCATCACCATCGCCGCGGCGCCGACCCTAGGCCCTATCATCGGCGGCGCCTTTATCACGAGCGGCTGCGGCTGGCGCTGGACTGAGTACCTGACGGGCATCGTCATGATGGTCCAGTTCGTCCTAGACGCCTTCTGGCTAGACGAGAGCCACGCTGAAGTGCTTCTCACACGGAAGGCCAGCCTCCTCCGTCGGTCTACGGGGAATTTTAGTCTCCACGCTAAGTGGGAGGAGACTAGCCCAACGTTCAAGAGTTTACTGAGTACCTACCTTGTTCGACCGTTTCAGATGCTCCTGGATCCAATCTGCCTGCTGCTTACGATCTATACCTCTTTCGTCTATGCAATCCTTTACGCGAGCTTAGAGAGTTTCGCTCTCGAATACGGCCGGTTCCGAGGATGGGGCCCCGTCGTGAGCCAGCTTCCCTTTCTGTCCCTCTTAATTGGCTGTCTCTTTGCCGCCGCCGCCAACATCTTCAACAACATCTATTACGGAAAGAAGCTCGTTGCCAACAACTTCAAGCCTGTTCCTGAAGCGAGACTTCCACCAAGATTGCATCCGCTCGCGTACAGC????????????????????????----------------------------------------------------------------------------------------------TCCAGTATCTCGTCGATACTTTTACGCGCTACAGTGCTAGCGCTATTGCGGCTAACACTTTTGTCCGATCCATGGCTGCAGGTGCTTTTCCTCTCTTTGTCTGGCCCATGTATGAAAAGATCGGCATCGATTGGGGCAGCACTATCTTTGCCTGCATTAGTGTGCTTCTGCTGCCAGCTCCGTTCCTCTTTTTCAAATGGGGTTATCGGATCAGGGCCCGTGGCGAATTCAGCAAGCTCTCGACC Botrytis_hyacinthi ATGAACGAACCCACGGAAGAGTCCAACATGGGTGAC---------AAACAAGAAGCCCTATTG------------------------------------GGCGATATAGTCGACTTCGAGGGAGACTCTGACACGCTCAACCCCCAGAACTGGCCCATGGGGAAAAAGGTCTACACGACAGCCCTGTGGGCCCTGACTACGTGCTGGATCACCTTCGCCTCCGCCATCTACTCGGCCGGCACAGCAGAGATTACCCAGGAGTTCCATGTGTCATACGAGGTAGCCAACGCGGGCACCAGTCTGCTCATTTTCGGCTTCGCCCTTGGACCCATGCTCTGGGCGCCTCTGTGCGAGGTTTACGGTCGGAAATGGCCTGCTCTCGCTCCCTATTTTATTAGCGCAGCTTTCGCCTTCGGCACTGCGACCGCCAAGGATATCCAGACAATCCCAATAACAAGGTTCTTCGCTGGCGTTTTCGGCAGCTCACCCATCTCCATCACGGGCGGCTCCATAGTTGACATCTGGACCCCACGCCAGCGGGGCACTCCCATGGTGTGCTACGGCATCACCATCGCTGCGGCGCCGACCCTGGGCCCTATCATCGGCGGTGCCTTTATCGCGAGCGGCTGCGGCTGGCGCTGGACCGAGTACCTGACGGGCATCGTCATGATGGTCCAGTTCGTCCTAGACGCCTTCTGGCTAGACGAGAGC-----TGACGTGCTTCTCACACGGAAGGCCAGCCGCCTCCGTCGGTCTACGGGGAATTTCAGTCTCCACGCTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Botrytis_cinerea_T4 ATGAACGAACCCGCGGATGAGTTCAACATGGGCGTC---------AAACAAGAAGCCCAATTG------------------------------------GGCGATATAGTCGACTTCGAGGGAGACTCCGACACGCTCAACCCCCAGAACTGGCCCATGGGGAAAAGGGTCTACACGACAGCCCTGTGGGCCCTGACTACGTGCTGGATCACCTTCGTCTCCGCCATCTGATCGGCCGGCACAGCAGAGATTACCCAGGAATTCCATGTGTCATACGAGGTAGCCAACGCGGGCACCAGTCTGCTCATTTTCGGCTTCGTCCTTGGACCCATGCTCTGGGCGCCTCTGTGCCAGGTTTACGTCCGGAAATGGCCTGCTCTCGCTCCCTGTTTCATTAGCGCAGCTTTCGCATTCGGCACTGCGACCGCCAAGGATATCCAGACAATCCTAATAACAAGGTTCTTCACTGGCGTCTTCGGCAGCTCATCCATCTCCATCACGGGCGGCTCCATCGTTGACATCTGGACCCCACGCCAGCGGGGCACTCCCATGGTGTGCTACAGCATCACCATCGCTGCGGCGCCGACCCTGGGCCCTATCATCGACGGCGCCTTTATCGCGAGCGGCTGCGGCTGGCGCTGGACCGAGTACCTGACGGGCATCGTCATCATGGTCCAGTTCGTCCTAGACGCCGTCTGGCTAGACGAGAGCCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Botrytis_cinerea_B05.10 ATGAACGAACCCGCGGAAGAGTCCAACATGAGTGTC---------AAACAAGAAGCCCAATTG------------------------------------GGCGCTACAGTCGACTTCGAGGGAGACTCCGACACGCTCAACCCCCAGAACTGGCCCATGGGGAAAAAGGTCTACACGACAGCCCTGTGGGCCCTGACTACATGCTGGATCACCTTCGCCTCCGCCATCTACTCTGCTGGCACAGCAGAGATTACCCAGGAATTCCATGTGTCATACAAGGTAGCCAACGCGGGTACTAGTCTGCTCATTTTCGGCTTCGCCCTTGGACCCATGCTCTGGGCGCCTCTGTGCGAGGTTTACGGTCGGAAATGGCCTGCTCTCGCTCCCTATTTCATTAGCGCAGCTTTCGCCTTCGGCACTGCGGCCGCCAAGAACATCCAGACAATCCTAATAACAAGGTTCTTCGCTGGCGTCTTCGGCAGCTCACCCATCTCCATCACAGGCGGCTCCATCGTTGACATCTGGACCCCACGACAGCGGGGCACTCCCATGGTGTGCTACGGCATCACTATCGCTGCGGCGCCGACCCTGGGCCCTATCATCGGCGGCGCCTTTATCGCGAGCGGCTGCGGCTGGCGCTGGACCGAGTACCTGACGGGCATCGTCATGATGGTTCAGTTCGTCCTAGACGCCTTCTGGCTAGACGAGAGCCACGCTGACGTGCTTCTCACACGGAAGGCCAGCCGCCTCCGTCGGTCTACAGGAAATTTCAGTCTCCACGCTAAGTGGGAGGAGACTAGCCTAACATTCAAGAGTTTACTGAGTATCTACCTTGTTCAACTGTTCCAGATACTTCTGGATCCAATTTGCCTACTACTCACAATCTATACCTCTTTTGTCTATGCAATTCTTTATGCGAGCTTAGAGAGTTTCGCTCTCGAATATGGCCGGTTCCAACGATGGGGCTTTGTCGTAAACCAGCTTCCTTTTCTGTCCCTCTTAATTGACTATCTCTTTGCTACCGCCGCCAATATCTTCAACAATATCTATTACGGAAAGAAGCTCATTGCCAACAACTTCAAGCCTGTTTCTGAAGCGAGATTTCCACTAATGATGGTAAGCGGATTCGCCTTCTCTTTAGGTCTTTTCCTTTTTGGCGGAATCTCGGTTGAGCACGTTTCGAGCCCTTGGCCATTCATTATCGGTGTTTTCCTTACAGAGATTAGCTTCATTACTATCTTCCAATCGTTCCTCCAGTATATTGTCGATACTTTTACGCGCTACAGTGCTAGCGCTATTGCAGCTAACACCTTTGTCCGATCCATAGCTGCAGGTGCTTTCCCTCTCTTTGTCTGACCTATATATGAAAAGATCGGCATCGATTGGAGCAGCACTATCTTTGCCTGCATTAGCGTGCTTCTGCTGCCAGCTCCATTCCTCTTTTTCAAGTGGGGTTATCAGATCAGGGCCCGTGGCGAATTCAGCAAGCTCTCAACC Aspergillus_carbonarius ---------------ATGTCTCAACCCCACAGCCCAGTGGTTACCAAGAGTGAAGCA---GGTTTTACGCATCCCCTGCTCTATGAAGCAACCTCACCAGATACTTTGGTCGACTTTGATGGTCAGGATGACCCATACCGTCCCATCAACTGGCCCTTTCGAAAGAAGGCCAAGACCACGATCCTATACGGAATGACTACATGTTGGATCACCTTTGCGTCGGCCGTCTATTCAGCGGGCATGCAGCAGATTGCGCAAGAATTCCATGTCTCTACAGAAGTATCCACTGCAGGAATCAGCTTGCTCGTCTTTGGTCTTGGGCTGGGCCCATTGATCTGGGCACCGTTGAGCGAGGTCTATGGGCGTAAGATGGTCGCCATCGTGCCTTACTTCATAGCCGCAGTATTTTCGTTTGGGACAGCAACGGCTAAGGACATCCAGACTCTGTTGATAACCCGGTTCTTCTCTGGATTCTTCGGCAGCTCTAGTGTGGCGATAACGGGCGGTGCTATGGCGGACATCTGGAAGCCAGAGCATCGCGGTGTCGCTATCGTCGTCTATTCGCTCACTCTCGTCGGGGGACCATGTCTTGGTCCCATCATTGGTGGGGCGATGGCATCCAGCTATCTTCGTTGGCGCTGGACGGAATACCTTACGGGCATCATGATGATGGCCCAGTTTACACTGGACTTCTTTCTCCTGGAGGAGAGCTATGCGCCCGCCTTATTGGTTCGAAAAGCACGCCAACTGCGGCTGGAAGGCAAGAATTGGGCTTTGCATGCGAAGCACGAGGAATGGGACGTGTCCATCTCCGAAATGTCGCAGAAATATCTGATTCGCCCTTTCCAGACATTGGGTACCCCCATTGGTCTGCTCATGTCGTCCTACGGAGCTTTCGTTTACGCGATTCTCTATGTGAACCTTGAAAGCTTCGCGATTGAATTTCAAGAGATCCGCGGCTGGGGACCGGTTACCGGGAACCTTCCTTTCATTGCCCTCCTCATTGGAATCTTCTTCGCCGCCTTGTTCAACATCCACAACAACAGATACTACTTCAAGAAACTCCGCGAGAACAATGGCAAGCCCGTACCCGAAGCCAGACTGCCTCCGATGATGGTTGGCGGGTTGGTATTTACTGGCGGCTTATTTCTCTTCGGAGGGACC---TCATCGCCCAAAATCAACTACTGGCCATCATTAATTGGCATCGCATTCACCGGGTTCGGATTCACCACCATCTTCCAAAGTTCGCTGAACTACCTGGTCGACACTTTCCTCCGCTTCAGCGCCAGCGCTATCGCAGCCACCACTTTGCTGCGATCTATCCTGGCAGGGGCCTTTCCGCTTTTTGTGGAGCCAATGTTCCGCAACATTGGGGTAGACTGGGGCATCACGGTGTTTGGCTGCATTGCCGCGGTCTTGATTCCAGTTCCGTTTCTCTTTTTTGCGTGGGGACGGAGGATCCGTGCAAAGAGTCGGTGGAGCAGCCATGCTGTA ; END; BEGIN TREES; Title 'Trees from "phylo_bik6_final.nxs"'; LINK Taxa = Taxa; TRANSLATE 1 Fusarium_fujikuroi, 2 Fusarium_verticillioides, 3 Fusarium_oxysporum, 4 Botrytis_tulipae, 5 Botrytis_elliptica, 6 Botrytis_hyacinthi, 7 Botrytis_cinerea_T4, 8 Botrytis_cinerea_B05.10, 9 Aspergillus_carbonarius; TREE tree_1 = (((1,2),(3,(4,((5,6),(7,8))))),9); (((1:0.022664545581982387,2:0.03555785887768936):0.020752863310325775,(3:0.01430735198610189,(4:0.01537238163155108,((5:0.03720879380375508,6:0.06965819717504562):1.047332781722865E-6,(7:0.0025836183084350095,8:0.041601206461816975):0.014959501916103735):0.0014934503096899476):0.011089657175511358):0.023176389521522123):0.4480882042258411,9:0.4480882042258411) END; BEGIN MacClade; Version 4.0 87; LastModified -849118719; FileSettings editor '0' '0' '1' '1'; Singles 000; Editor 11011001111111100100010010 '1' '12' Geneva '9' '100' '1' all; EditorPosition '44' '12' '707' '1227'; TreeWindowPosition '46' '6' '751' '1230'; ListWindow Characters closed Geneva '9' '50' '10' '129' '406' 000; ListWindow Taxa closed Geneva '9' '50' '10' '129' '490' 100000000; ListWindow Trees closed Geneva '9' '50' '10' '276' '490'; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharSets closed Geneva '9' '50' '25' '129' '181'; ListWindow TaxSets closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartitions closed Geneva '9' '50' '10' '276' '490'; ListWindow CharPartNames closed Geneva '9' '50' '10' '276' '490'; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490'; ChartWindowPosition '52' '30' '718' '1220'; StateNamesSymbols closed Geneva '9' '10' '50' '30' '148' '220'; WindowOrder Data; OtherSymbols & / 00 ? -; Correlation '0' '0' '1000' '0' '0' 10011010; Salmo 00000001; EditorFile '4'; ExportHTML _ MOSS '100' 110000; PrettyPrint 10; EditorToolsPosition '593' '52' '115' '165'; TreeToolsPosition '636' '9' '126' '138'; TreeWindowProgram 10; TreeWindow 0000; Continuous '0' '3' 1; Calculations 0000001; SummaryMode '0' '0' 0; Charts Geneva '9' ( normal ) 0010; NexusOptions '0' '0' '50' 001010011; TipLabel '1'; TreeFont Geneva '9' ( normal ); TreeShape 1.0 1.0 0100; TraceLabels 0101; ChartColors '0' '0' '65535' '9' '0' 1; ChartBiggestSpot 1; ChartPercent 10; ChartBarWidth '10' 1; ChartVerticalAxis 10101; ChartMinMax '0'; TraceAllChangesDisplay '1' 1; BarsOnBranchesDisplay '0' '0' '60000' '10000' '10000' '10000' '10000' '60000' '65000' '65000' '65000' '6' '1' 0000101; ContinuousBranchLabels 0; AllStatesBranchLabels 1; IndexNotation '2' 1; PrintTree 10.00 '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' '2' Geneva '9' ( normal ) Geneva '10' ( normal ) Geneva '9' ( normal ) Geneva '9' ( normal ) Geneva '9' ( bold ) Geneva '9' ( normal ) Geneva '9' ( normal ) '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '0' '1' '1' '1' '1' '0' '-12473' '-39' '4' '-40' '0' '1' '2' '1' '8' '0' '0' '0' '2' 1000111000000000000100000111000; MatchChar 00 .; EntryInterpretation 01; ColorOptions 00; TreeTools '0' '5' '4' '0' '10' '4' '0' 00100111111101110; EditorTools '0' '0' '0' '1000' '0' '0' '6' '3' '1' 100010101110011; PairAlign '2' '2' '3' '2' '1' '1' '2' '1' '3' 1010; BothTools '1'; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 1497; EXSET * UNTITLED = 385 - 472 874 - 960 1078 - 1167 1423 - 1497; END; BEGIN CODONS; CODONPOSSET * UNTITLED = 1: 1 - 1495\3, 2: 2 - 1496\3, 3: 3 - 1497\3; CODONPOSSET CodonPositions = 1: 1 - 1495\3, 2: 2 - 1496\3, 3: 3 - 1497\3; CODESET * UNTITLED = universal: 1 - 1497; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1497; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1363039814422; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1243900872490880944; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 9206990729053095797; mqVersion 275; checksumv 0 3 3299681089 null getNumChars 1497 numChars 1497 getNumTaxa 9 numTaxa 9 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 244850.0 sumSquares 4.611686018427564E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 1416 212; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;