#NEXUS [written Sun Apr 14 14:02:04 CAT 2013 by Mesquite version 2.75 (build 564) at PC-de-Mika/127.0.0.1] BEGIN TAXA; TITLE Taxa_for_Ceratocystis_fimbriata_s.l._ITS_analysis; DIMENSIONS NTAX=17; TAXLABELS CMW35958_Ceratocystis_zambeziensis CMW35959_Ceratocystis_zambeziensis CMW35962_Ceratocystis_zambeziensis CMW35963_Ceratocystis_zambeziensis CMW35970_Ceratocystis_thulamelensis CMW35971_Ceratocystis_thulamelensis CMW35972_Ceratocystis_thulamelensis CMW35973_Ceratocystis__thulamelensis CMW4068_Ceratocystis__albifundus CMW23825_Ceratocystis__albifundus CMW37312_Ceratocystis__albifundus CMW37313_Ceratocystis__albifundus CMW15991_Ceratocystis__tanganyicensis CMW15999_Ceratocystis__tanganyicensis CMW14276_Ceratocystis__tsitsikammensis CMW14278_Ceratocystis__tsitsikammensis CMW11164_Ceratocystis__virescens ; END; BEGIN CHARACTERS; TITLE Ceratocystis_fimbriata_s.l._ITS_alignments; DIMENSIONS NCHAR=654; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = N; MATRIX CMW35958_Ceratocystis_zambeziensis CCATGTGTGAaC---GTA-CC----TATC-TTATAGTG-AG---ATGA---------AAGC-TGCTTTGGTGG-TAGAGGAG----------------- CMW35959_Ceratocystis_zambeziensis CCATGTGTGAaC---GTA-CC----TATC-TTATAGTG-AG---ATGA---------AAGC-TGCTTTGGTGG-TAGAGGAG----------------- CMW35962_Ceratocystis_zambeziensis CCATGTGTGAaC---GTA-CC----TATC-TTATAGTG-AG---ATGA---------AAGC-TGCTTTGGTGG-TAGAGGAG----------------- CMW35963_Ceratocystis_zambeziensis CCATGTGTGAAC---GTA-CC----TATC-TTATAGTG-AG---ATGA---------AAGC-TGCTTTGGTGG-TAGAGGAG----------------- CMW35970_Ceratocystis_thulamelensis CCATGTGTGAAC---GTA-CC----TATC-TTATAGTG-AG---ATGA---------AAGC-TGCTTTGGTGG-TAGGTAAGGGAAGGGGTGTG----T CMW35971_Ceratocystis_thulamelensis CCATGTGTGAAC---GTA-CC----TATC-TTATAGTG-AG---ATGA---------AAGC-CGCTTTGGTGG-TAGGTAAGGGAAGGGGTGTG----T CMW35972_Ceratocystis_thulamelensis CCATGTGTGAAC---GTA-CC----TATC-TTATAGTG-AG---ATGA---------AAGC-TGCTTTGGTGG-TAGGTAAGGGAAGGGGTGTG----T CMW35973_Ceratocystis__thulamelensis CCATGTGTGAAC---GTA-CC----TATC-TTATAGTG-AG---ATGA---------AAGC-TGCTTTGGTGG-TAGGTAAGGGAAGGGGTGTGTGTGT CMW4068_Ceratocystis__albifundus CCATGTGTGAAC---ATACCC----TGTC-TTTTGGTGAAG---ACGGA--------AAGC-TGCCTTGGTGGGTGTCTGTAGTGGTGTTAACC----- CMW23825_Ceratocystis__albifundus CCATGTGTGAAC---ATACCC----TGTC-TTTTGGTGAAG---ACGGA--------AAGC-TGCCTTGGTGGGTGTCTGTAGTGGTGTTAACC----- CMW37312_Ceratocystis__albifundus CCATGTGTGAAC---ATACCC----TGTC-TTTTGGTGAAG---ACGGA--------AAGC-TGCCTTGGTGGGTGTCTGTAGTGGTGTTRACC----- CMW37313_Ceratocystis__albifundus CCATGTGTGAAC---ATACCC----TGTC-TTTTGGTGAAG---ACGGA--------AAGC-TGCCTTGGTGGGTGTCTGTAGTGGTGTTAACC----- CMW15991_Ceratocystis__tanganyicensis CCATGTGTGAAC---GTACCC---CTATC-TTGTAGTG-AG---ATGC---------ATGC-TGTTTTGGCGG-CGGGAAAG----------------- CMW15999_Ceratocystis__tanganyicensis CCATGTGTGAAC---GTACCC---CTATC-TTGTAGTG-AG---ATGC---------ATGC-TGTTTTGGCGG-CGGGAAAG----------------- CMW14276_Ceratocystis__tsitsikammensis CCATGTGTGAAC---GTA-CC----TATC-TTATAGTG-GAGATATGA---------AAGC-TGCTTTGGTGG-TA-AGGGG----------------- CMW14278_Ceratocystis__tsitsikammensis CCATGTGTGAAC---GTA-CC----TATC-TTATAGTG-GAGATATGA---------AAGC-TGCTTTGGTGG-TA-AGGGG----------------- CMW11164_Ceratocystis__virescens CCATATGTGAAC---ATACCT------------------AT----------------TAGC-TGCTTTGGCAG-------------------------- CMW35958_Ceratocystis_zambeziensis --------------------------------------------CCTTGTATA------GGGC------------------------------------ CMW35959_Ceratocystis_zambeziensis --------------------------------------------CCTTGTATA------GGGC------------------------------------ CMW35962_Ceratocystis_zambeziensis --------------------------------------------CCTTGTATA------GGGC------------------------------------ CMW35963_Ceratocystis_zambeziensis --------------------------------------------CCTTGTATA------GGGC------------------------------------ CMW35970_Ceratocystis_thulamelensis GTGTGTGTGTGGGTGTGTGTGtgGGTGAGTGGGTGAGTGGGTTTACCTTCTATAAAGAGGTAG------ATGTTACCT-----GCCCAGCCCAGCCCAG CMW35971_Ceratocystis_thulamelensis GTGTGTGTGTGGGTGTGTGTGTGGGTGAGTGGGTGAGTGGGTTTACCTTCTATAAAGAGGTAG------ATGTTACCT-----GCCCAGCCCAGCCCAG CMW35972_Ceratocystis_thulamelensis GTGTGTGTGTGGGTGTGTGTGTGGGTGAGTGGGTGAGTGGGTTTACCTTCTATAAAGAGGTAG------ATGTTACCTGCCCAGCCCAGCCCAGCCCAG CMW35973_Ceratocystis__thulamelensis GTGTGTGTGTGGGTGTGTGTGTGGGTGAGTGGGTGAGTGGGTTTACCTTCTATAAAGAGGTAG------ATGTTACCT---------------GCCCAG CMW4068_Ceratocystis__albifundus --------------------------------------------TCTTTTTATAAGGGGGCAG------------------------------------ CMW23825_Ceratocystis__albifundus --------------------------------------------TCTTTTTATAAGGGGGCAG------------------------------------ CMW37312_Ceratocystis__albifundus --------------------------------------------TCTTTTTATAAGGGGGCAG------------------------------------ CMW37313_Ceratocystis__albifundus --------------------------------------------TCTTTTTATAAGGGGGCAG------------------------------------ CMW15991_Ceratocystis__tanganyicensis ---------------------------------------------CCTTCTGTAAGGGAAGGC------------------------------------ CMW15999_Ceratocystis__tanganyicensis ---------------------------------------------CCTTCTGTAAGGGAAGGC------------------------------------ CMW14276_Ceratocystis__tsitsikammensis --------------------------------------------CCTTGTATA------AGGC------------------------------------ CMW14278_Ceratocystis__tsitsikammensis --------------------------------------------CCTTGTATA------AGGC------------------------------------ CMW11164_Ceratocystis__virescens ----------------------------------------------GCTTGGTAACACAAGTC------------------------------------ CMW35958_Ceratocystis_zambeziensis --------------------T-ACCGCCACCAGCAGTA-TAAAAT-----CAGTCTTCACCACT----AAAACTCT----TTA--TATTTTTTTACT-- CMW35959_Ceratocystis_zambeziensis --------------------T-ACCGCCACCAGCAGTA-TAAAAT-----CAGTCTTCACCACT----AAAACTCT----TTA--TATTTTTTTACT-- CMW35962_Ceratocystis_zambeziensis --------------------T-ACCGCCACCAGCAGTA-TAAAAT-----CAGTCTTCACCACT----AAAACTCT----TTA--TATTTTTTTACT-- CMW35963_Ceratocystis_zambeziensis --------------------T-ACCGCCACCAGCAGTA-TAAAAT-----CAGTCTTCACCACT----AAAACTCT----TTA--TATTTTTTTACT-- CMW35970_Ceratocystis_thulamelensis CCCAGCCCAGCCCCGCCCCGCCCCCGCTACCGGCAGTA-TAAGTC----------TTCACCACT----AAACTCTT-AATATT--TGTTTTCTTAAT-- CMW35971_Ceratocystis_thulamelensis CCCAGCCCAGCCCCGCCCCGCCCCCGCTACCGGCAGTA-TAAGTC----------TTCACCACT----AAACTCTT-AATATT--TGTTTTCTTAAT-- CMW35972_Ceratocystis_thulamelensis CCCAGCCCAGCCCCGCCCCGCCCCCGCTACCGGCAGTA-TAAGTC----------TTCACCACT----AAACTCTT-AATATT--TGTTTTCTTAAT-- CMW35973_Ceratocystis__thulamelensis CCCAGCCCAGCCCCGCCCCGCCCCCGCTACCGGCAGTA-TAAGTC----------TTCACCACT----AAACTCTT-AATATT--TGTTTTCTTAAT-- CMW4068_Ceratocystis__albifundus ------------CCCACTACCGCTAGCCACCAGCAGCA-TACAAG-------TCTTTTACCACT----ATAAACCT-TCTGTA--TA-TTTTTTAAA-A CMW23825_Ceratocystis__albifundus ------------CCCACTACCGCTAGCCACCAGCAGCA-TACAAG-------TCTTTTACCACT----ATAAACCT-TCTGTA--TA-TTTTTTAAA-A CMW37312_Ceratocystis__albifundus ------------CCCACCACCGCTAGCCACCAGCAGCA-TACAAG-------TCTTTTACCACT----ATAAACCT-TCTGTA--TAtTTTTTTAAA-A CMW37313_Ceratocystis__albifundus ------------CCCACTACCGCTAGCCACCAGCAGCA-TACAAG-------TCTTTTACCACT----ATAAACCT-TCTGTA--TA-TTTTTTAAA-A CMW15991_Ceratocystis__tanganyicensis --------------------CTAGCGCTGCCGGCAGTA-TAAGTC----------TTTACCATT----AAAACTCT-TTTATA--TTTTTTTCTAGA-- CMW15999_Ceratocystis__tanganyicensis --------------------CTAGCGCTGCCGGCAGTA-TAAGTC----------TTTACCATT----AAAACTCT-TTTATA--TTTTTTTCTAGA-- CMW14276_Ceratocystis__tsitsikammensis --------------------T-ACCGCCACCAGCAGTA-T--AAT-----CAGTCTTCACCACT----AAACTCTT----ATATTTTTTTTTTTTTT-- CMW14278_Ceratocystis__tsitsikammensis --------------------T-ACCGCCACCAGCAGTA-T--AAT-----CAGTCTTCACCACT----AANCTCTT----ATATTTTTTTTTTTTTT-- CMW11164_Ceratocystis__virescens ---------------------------TGCCGGTAGTA-------------------------TTTTAAAACTCTT---------TTTTTTATTCTAAA CMW35958_Ceratocystis_zambeziensis ---TCTTTTACTGCTGAGT--GGCATA-ACTAT--AAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW35959_Ceratocystis_zambeziensis ---TCTTTTACTGCTGAGT--GGCATA-ACTAT--AAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW35962_Ceratocystis_zambeziensis ---TCTTTTACTGCTGAGT--GGCATA-ACTAT--AAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW35963_Ceratocystis_zambeziensis ---TCTTTTACTGCTGAGT--GGCATA-ACTAT--AAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW35970_Ceratocystis_thulamelensis ---TTTTTCTTTGCTGAGT--RGCATA-ACTAT-AAAAAAAAG------TTAAAACYTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW35971_Ceratocystis_thulamelensis ---TTTTTCTTTGCTGAGT--GGCATA-ACTAT-AAAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW35972_Ceratocystis_thulamelensis ---TTTTTCTTTGCTGAGT--GGCATA-ACTAT-AAAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW35973_Ceratocystis__thulamelensis ---TTTTTCTTTGCTGAGT--GGCATA-ACTAT-AAAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW4068_Ceratocystis__albifundus TTTTTAAAAATTGCTGAGT--GGCATA-ACTAT--AAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW23825_Ceratocystis__albifundus TTTTTAAAAATTGCTGAGT--GGCATA-ACTAT--AAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW37312_Ceratocystis__albifundus TTTTTAAAAATTGCTGAGT--GGCATA-ACTAT--aAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW37313_Ceratocystis__albifundus TTTTTAAAAATTGCTGAGT--GGCATA-ACTAT--AAAAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW15991_Ceratocystis__tanganyicensis ACCTAGTGTATTGCTGAGT--GGCATAAACTAT----AAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW15999_Ceratocystis__tanganyicensis ACCTAGTGTATTGCTGAGT--GGCATAAACTAT----AAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW14276_Ceratocystis__tsitsikammensis ---TTTTTTACTGCTGAGT--GGCATA-ACTAT----AAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW14278_Ceratocystis__tsitsikammensis ---TTTTTTACTGCTGAGT--GGCATA-ACTAT----AAAAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW11164_Ceratocystis__virescens GAATTATTCATTGCTGAGT--GGCATT-AACAT----AATAAG------TTAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGC CMW35958_Ceratocystis_zambeziensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW35959_Ceratocystis_zambeziensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW35962_Ceratocystis_zambeziensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW35963_Ceratocystis_zambeziensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW35970_Ceratocystis_thulamelensis AGCGAAATGCGATWAGTAATGTGAATYGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW35971_Ceratocystis_thulamelensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW35972_Ceratocystis_thulamelensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW35973_Ceratocystis__thulamelensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW4068_Ceratocystis__albifundus AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW23825_Ceratocystis__albifundus AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW37312_Ceratocystis__albifundus AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACAYTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW37313_Ceratocystis__albifundus AGCGAAATGCGATAAGTARTGTGAATTGCAGAATTCAGTGAATCRTCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW15991_Ceratocystis__tanganyicensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW15999_Ceratocystis__tanganyicensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW14276_Ceratocystis__tsitsikammensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW14278_Ceratocystis__tsitsikammensis AGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW11164_Ceratocystis__virescens AGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTC CMW35958_Ceratocystis_zambeziensis CGAGCGTCATTTCACCACTCAAGACCCCC-C------CTTTGTTCTTGGTGTTGGAGGTCCTGTTCT-C----------CCCT--------------GA CMW35959_Ceratocystis_zambeziensis CGAGCGTCATTTCACCACTCAAGACCCCC-C------CTTTGTTCTTGGTGTTGGAGGTCCTGTTCT-C----------CCCT--------------GA CMW35962_Ceratocystis_zambeziensis CGAGCGTCATTTCACCACTCAAGACCCCC-C------CTTTGTTCTTGGTGTTGGAGGTCCTGTTCT-C----------CCCT--------------GA CMW35963_Ceratocystis_zambeziensis CGAGCGTCATTTCACCACTCAAGACCCCC-C------CTTTGTTCTTGGTGTTGGAGGTCCTGTTCT-C----------CCCT--------------GA CMW35970_Ceratocystis_thulamelensis CGAGCGTCATTTCACCACTCAAGGACCCC-----CTCTTTTGTTCTTGGTGTTGGAGGTCCTGTTCT-C----------CCCCT-----------GAAA CMW35971_Ceratocystis_thulamelensis CGAGCGTCATTTCACCACTCAAGGACCCC-----CTCTTTTGTTCTTGGTGTTGGGGGTCCTGTTCT-C----------CCCCT-----------GAAA CMW35972_Ceratocystis_thulamelensis CGAGCGTCATTTCACCACTCAAGGACCCC-----CTCTTTTGTTCTTGGTGTTGGAGGTCCTGTTCT-C----------CCCCT-----------GAAA CMW35973_Ceratocystis__thulamelensis CGAGCGTCATTTCACCACTCAAGGACCCC-----CTCTTTTGTTCTTGGTGTTGGAGGTCCTGTTCT-C----------CCCCT-----------GAAA CMW4068_Ceratocystis__albifundus CGAGCGTCATTTCACCACTCAAGA---CTTG------CTTTAGTTTTGGTGTTGGAGGTCCTGTTCT-TACCC------TTCC--------------GA CMW23825_Ceratocystis__albifundus CGAGCGTCATTTCACCACTCAAGA---CTTG------CTTTAGTTTTGGTGTTGGAGGTCCTGTTCT-TACCC------TTCC--------------GA CMW37312_Ceratocystis__albifundus CGAGCGTCATTTCACCACTCAAGA---CTTG------CTTTAGTTTTGGTGTTGGAGGTCCTGTTCT-TACCC------TTCT--------------GA CMW37313_Ceratocystis__albifundus CGAGCGTCATTTCACCACTCAAGA---CTTG------CTTTAGTTTTGGTGTTGGAGGTCCTGTTCT-TACCC------TTCY--------------GA CMW15991_Ceratocystis__tanganyicensis CGAGCGTCATTTCACCACTCAAGA---CTTT------GTTTTTTCTTGGTGTTGGAGGTCCTGTTCT-CTCTCTC----CCCT--------------GA CMW15999_Ceratocystis__tanganyicensis CGAGCGTCATTTCACCACTCAAGA---CTTT------GTTTTTTCTTGGTGTTGGAGGTCCTGTTCT-CTCTCTC----CCCT--------------GA CMW14276_Ceratocystis__tsitsikammensis CGAGCGTCATTTCACCACTCAAGA---CC-C------CTTTGTTTTTGGTGTTGGAGGTCCTGTTCT-C----------CCCT--------------GA CMW14278_Ceratocystis__tsitsikammensis CGAGCGTCATTTCACCACTCAAGA---CC-C------CTTTGTTTTTGGTGTTGGAGGTCCTGTTCT-C----------CCCT--------------GA CMW11164_Ceratocystis__virescens CGAGCGTCATTTCACCACTCAAGC----------------TCCGCTTGGTGTTGGAGGACCTGTTGT-T----------TTC----------------A CMW35958_Ceratocystis_zambeziensis ACAGGCCGCCGAAATGTATC-GGCTG-TTA----TACTTG-CCAACTCCCCTGTGTAGTA CMW35959_Ceratocystis_zambeziensis ACAGGCCGCCGAAATGTATC-GGCTG-TTA----TACTTG-CCAACTCCCCTGTGTAGTA CMW35962_Ceratocystis_zambeziensis ACAGGCCGCCGAAATGTATC-GGCTG-TTA----TACTTG-CCAACTCCCCTGTGTAGTA CMW35963_Ceratocystis_zambeziensis ACAGGCCGCCGAAATGTATC-GGCTG-TTA----TACTTG-CCAACTCCCCTGTGTAGTA CMW35970_Ceratocystis_thulamelensis ACAGGCCGCCGAAATGKATC-GGCTGTTTA----TACTTGCCCAACTCCCCTGTGTAGTA CMW35971_Ceratocystis_thulamelensis ACAGGCCGCCGAAATGTATC-GGCTGTTTA----TACTTGCCCAACTCCCCTGTGTAGTA CMW35972_Ceratocystis_thulamelensis ACAGGCCGCCGAAATGTATC-GGCTGTTTA----TACTTGCCCAACTCCCCTGTGTAGTA CMW35973_Ceratocystis__thulamelensis ACAGGCCGCCGAAATGTATC-GGCTGTTTA----TACTTGCCCAACTCCCCTGTGTAGTA CMW4068_Ceratocystis__albifundus ACAGGCCGCCGAAATGCATC-GGCTG-TTATTTTTACTTG-CCAACTCCCCTGTGTAGTA CMW23825_Ceratocystis__albifundus ACAGGCCGCCGAAATGCATC-GGCTG-TTATTTTTACTTG-CCAACTCCCCTGTGTAGTA CMW37312_Ceratocystis__albifundus ACAGGYCGCCGAAATGCATC-GGCTG-TTATTTTTACTTG-CCAACTCCCCTGTGTAGTA CMW37313_Ceratocystis__albifundus ACAGGCCGCCGAAATGCATC-GGCTG-TTATTTTTACTTG-CCAACTCCCCTGTGTAGTA CMW15991_Ceratocystis__tanganyicensis ACAGGCCGCCGAAATGCATC-GGCTG-TTA----TACTGGCCCAACTCCCCTGTGTAGTA CMW15999_Ceratocystis__tanganyicensis ACAGGCCGCCGAAATGCATC-GGCTG-TTA----TACTGGCCCAACTCCCCTGTGTAGTA CMW14276_Ceratocystis__tsitsikammensis ACAGGCCGCCGAAATGTATC-GGCTG-TTA----TACTTG-CCAACTCCCCTGTGTAGTA CMW14278_Ceratocystis__tsitsikammensis ACAGGCCGCCGAAATGTATC-GGCTG-TTA----TACTTG-CCAACTCCCCTGTGTAGTA CMW11164_Ceratocystis__virescens ACAGGCCACCGAAATGCATC-GGCTG-TTA----TACTTG--CAGCTTCCCTGTGTAGTA ; END; BEGIN TREES; Title Most_Parsimonious_Trees_from_Ceratocystis_fimbriata_s.l._ITS_analysis; LINK Taxa = Taxa_for_Ceratocystis_fimbriata_s.l._ITS_analysis; TRANSLATE 1 CMW35958_Ceratocystis_zambeziensis, 2 CMW35959_Ceratocystis_zambeziensis, 3 CMW35962_Ceratocystis_zambeziensis, 4 CMW35963_Ceratocystis_zambeziensis, 5 CMW35970_Ceratocystis_thulamelensis, 6 CMW35971_Ceratocystis_thulamelensis, 7 CMW35972_Ceratocystis_thulamelensis, 8 CMW35973_Ceratocystis__thulamelensis, 9 CMW4068_Ceratocystis__albifundus, 10 CMW23825_Ceratocystis__albifundus, 11 CMW37312_Ceratocystis__albifundus, 12 CMW37313_Ceratocystis__albifundus, 13 CMW15991_Ceratocystis__tanganyicensis, 14 CMW15999_Ceratocystis__tanganyicensis, 15 CMW14276_Ceratocystis__tsitsikammensis, 16 CMW14278_Ceratocystis__tsitsikammensis, 17 CMW11164_Ceratocystis__virescens; TREE PAUP_1 = ((((((1:0.0,2:0.0,3:0.0,4:0.0):5.0,(15:0.0,16:0.0):9.0):13.0,(((9:0.0,10:0.0):0.0,12:0.0):2.0,11:0.0):37.0):20.0,(5:0.0,6:0.0,7:0.0,8:0.0):23.0):16.0,(13:0.0,14:0.0):24.0):11.0,17:13.0):0.0; TREE PAUP_2 = ((((((1:0.0,2:0.0,3:0.0,4:0.0):6.0,(15:0.0,16:0.0):8.0):15.0,(5:0.0,6:0.0,7:0.0,8:0.0):17.0):21.0,(((9:0.0,10:0.0):0.0,12:0.0):2.0,11:0.0):40.0):17.0,(13:0.0,14:0.0):25.0):9.0,17:13.0):0.0; TREE PAUP_3 = ((((((1:0.0,2:0.0,3:0.0,4:0.0):5.0,(15:0.0,16:0.0):9.0):13.0,((9:0.0,10:0.0,12:0.0):2.0,11:0.0):37.0):20.0,(5:0.0,6:0.0,7:0.0,8:0.0):23.0):16.0,(13:0.0,14:0.0):24.0):11.0,17:13.0):0.0; TREE PAUP_4 = ((((((1:0.0,2:0.0,3:0.0,4:0.0):6.0,(15:0.0,16:0.0):8.0):15.0,(5:0.0,6:0.0,7:0.0,8:0.0):17.0):21.0,((9:0.0,10:0.0,12:0.0):2.0,11:0.0):40.0):17.0,(13:0.0,14:0.0):25.0):9.0,17:13.0):0.0; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 654; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 654; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 654; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1365940924732; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7716480133912057445; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6934873606612046715; mqVersion 275; checksumv 0 3 4207611196 null getNumChars 654 numChars 654 getNumTaxa 17 numTaxa 17 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 190165.0 sumSquares -2.305843009213691E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6934873606612046715 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;