#NEXUS [written Tue May 20 09:36:27 SGT 2014 by Mesquite version 2.75 (build 566) at Simba.local/192.168.1.5 (William Piel)] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=30; TAXLABELS Conus_diadema_1 Conus_diadema_3 Conus_diadema_10 Conus_lividus_2 Conus_lividus_3 Conus_lividus_9 Conus_lividus_10 Conus_lividus_11 Conus_lividus_24 Conus_lividus_25 Conus_lividus_26 Conus_lividus_27 Conus_lividus_29 Conus_lividus_32 Conus_lividus_41 Conus_lividus_42 Conus_lividus_45 Conus_lividus_46 Conus_lividus_47 Conus_lividus_48 Conus_lividus_51 Conus_quercinus_1 Conus_quercinus_6 Conus_quercinus_7 Conus_quercinus_8 Conus_sanguinolentus_1 Conus_sanguinolentus_2 Conus_sanguinolentus_3 Conus_sanguinolentus_4 Conus_sanguinolentus_8 ; END; BEGIN CHARACTERS; TITLE Additional_File_2; DIMENSIONS NCHAR=117; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Conus_diadema_1 CTGCAGCCGACTACAAACGGTCTGACTGGTTCGCTTGGGTCATC---CATAGTTGCTGCAGCAATCCACCCTGTGCCCATGTAAAT---------TGTCGTCGAAGACGCTGATGCT Conus_diadema_3 CCGCAGCCAAAGTCAAATATTCTCTGACGCCGGCG---------------GAATGCTGTCCCAATCCTCCCTGTTTCGCGCAACATTCGGATCTTTGTGGCGCAAGACGTTGATGCT Conus_diadema_10 CCGCAGCCAACAACAAAGCGACTGACCTGATGGCTCTGCGTTAC---CATGAATGCTGTAAACATCCTCCCTGTAGAAACACTCGCCCAGACTTGTGTGGCGGAAGACGCTGATGCT Conus_lividus_2 CTGCAGCCAAAGTCAAATATTCTAAGACGCCGGAG---------------GAATGCTGTCCCAATCCTCCCTGTTTCGCGACAAATTCGGATATTTGTGGCGGAAGACGCTGATGCT Conus_lividus_3 CTGCAGCCAAAGTCAAATATTCTAATACGCGGGAG---------------GAATGCTGTCCCAATCCTCCCTGTTTCGCGACACATTCGGAAATTTGTGGCGGAAGACGCTGATGCT Conus_lividus_9 CCGCACCCAACGTCAAAGATTCTAAGGCGTCGGGT---------------TCATGCTGTGACAATCCTTCCTGTGCCGTGAATAATCGCCAT---TGTGGCAGAAGACGTTGATGCT Conus_lividus_10 CCGCAGCCAACGCCAAATTGTCTGAGCGGTTGGAT---------------CCATGCTGTAGGGAGCCTCCCTGTGCCTCGACACATATTGATCGTTGTGGCTGAAGACGTTGATGCT Conus_lividus_11 CCGCAGCCAACGCCAAATTGTCTGAGCGGTTGGAT---------------CCATGCTGTAGGGACCCTCCCTGTGCCTCGACTCATATTGATCGTTGTGGCTGAAGACGTTGATGCT Conus_lividus_24 CTGCAGCCAGCGACAAAGCGTCTGAGCTGATGGCTCTGGCCGTCAGG---GGATGCTGTTCCAATCTTGCCTGTGCTGGGAATAATCTACATATCTGTGGCAGAAGACGCTGATGCT Conus_lividus_25 CTGCAGCCAGCGACAAAGCGTCTGAGCTGATGGCTCTGGCCGTCAGG---GGATGCTGTTCCAATCTTGCCTGTGCTGGGAATAATCTACATATTTGTGGCAGAAGACGCTGATGCT Conus_lividus_26 CTGCAGCCAGCGACAAAGCGTCTGAGCTGATGGCTCTGGCCGTCAGG---GGATGCTGTTCCAATCCTGCCTGTGCTGGGAGTAATGCACATATCTGTGGCAGAAGACGCTGATGCT Conus_lividus_27 CTGCAGCCAGCGACAAAGCGTCTGAGCTGATGGCTCTGGCCGTCAGG---GGATGCTGTTCCCATCCTGCCTGTGCTGGGAGTAATGCACATATCTGTGGCAGAAGACGCTGATGCT Conus_lividus_29 CCGCAGCCAAATTCAAAGCGCCTGCCCTGATGAAGCGGACCGACAGCGAAGAATGCTGTTTAGACTCTCGCTGTGCCGGGCAACATCAAGACCTGTGTAGCTGAAGACGCTGATGCT Conus_lividus_32 CCGCAGCCAACGACAAAGCATCTGTCCAGATCGCTCTGACAGTG---CAGGAGTGCTGTGCCGATTCTGCCTGTAGCCTGACGAATCCACTCATTTGTGGA---AGACGCTGATGCT Conus_lividus_41 CCGCAGCCAACGCCAAATTGTTTGAC---------------GTCAGGCAATCATGCTGTTCTACTCCTCCCTGTGCCCTCCTCTATATGGAGATGTGTGGCTGAAGACGCTGATGCT Conus_lividus_42 CCGCAGCCAACGCCAAATTGTTTGCC---------------GTCAGGCAATCATGCTGTTCTACTCCTCCCTGTGCCCTCCTCTATATGGAGATGTGTGGCTGAAGACGCTGATGCT Conus_lividus_45 CCGCAGCCAACGACAAAACGTCTGCCTGGACCACTCGGACCGTCAGGCAGTCATGCTGTGCTACTCCTTCCTGTGCCAGGCTTTATGAGAAGGTGTATGGCAGAAGATACTGATGCT Conus_lividus_46 CCGCAGCCAACGACAAAACGTCTGCCTGGACCACTCGGACCGTCAGGCAGTCATGCTGTGCTACTCCTTCCTGTGCCAAGCTTTATAAGAAGCTGTATGGCACAAGACACTGATGCT Conus_lividus_47 CCGCAGCCAACGACAAAACGTCTGCCTGGATCGCTTGGGCCGGCAGCCAGTCATGCTGTGCTACTCCTTCCTGTGCCAGGCTTTATAAGAAGCTGTATGGCACAAGACACTGATGCT Conus_lividus_48 CCGCAGCCAACGACAAAACGTCTGCCTGGATCGCTTGGGCCGGCAGCCAGTCATGCTGTGCTACTCCTTCCTGTGCCAAGCTTTATAAGAAGCTGTATGGCACAAGACACTGATGCT Conus_lividus_51 CCGCAGCCAACGACAAAGCGTCTGCCTGGATCGCTCGGACCGTCAGGCAGTCATGCTGTGCTGCTCCTTCCTGTTTCATGCTTTGTTAGAAGGTGTATGGCGGAAGACACTGATGCT Conus_quercinus_1 CTGCAGCCGACGACAAACCGTCTGACTGGATCGCTCTGGCCATCAAG---CAATGCTGCGCCAATCCACCCTGTAAACATGTAAAT---------TGTCGTTGAAGACACTGATGCT Conus_quercinus_6 CTGCAGCCAAATTCAAAGCGCCTGCCCTGATGGAGCTGTCCGTCAGGCAAGGATGCTGTTCATATCCTGCCTGTGCCGTGAGCAATCCAGACATCTGTGGCGGAGGACGCTGATGCT Conus_quercinus_7 CCGCAGCCAACGACAAAGCGTCTGACCTGATGGCTCTT------AGGGGAGGATGCTGTTCCAGACCTCCCTGTATCCTGAAGCATCCAGAGATTTGTGGCAGAAGACGCTGATGCT Conus_quercinus_8 CCGCAGCCAACGACAAAGCGTCTGACCTGATGGCTCTT------AGGGGAGGATGCTGTTCCAGACCTCCCTGTATCCTGGAGCATCCAGAGATTTGTGGCAGAAGACGCTGATGCT Conus_sanguinolentus_1 CTGCAGCCAAAGTCAAATATTCTAAGACGCCGGAG---------------GAATGCTGTCCCAATCCTCCCTGTTTCGCGACAAATTCGGATATTTGTGGCGGAAGACGCTGATGCT Conus_sanguinolentus_2 CTGCAGCCAAAGTCAAATATTCTAATACGCCGGAG---------------GAATGCTGTCCCAATCCTCCCTGTTTCGCGACACATTCGGAAATTTGTGGCGTTAGACGCTGATGCT Conus_sanguinolentus_3 CCGCAGCCAACGCCAAATTGTCTGAGCGGTTGGAT---------------CCATGCTGTAGGGAGCCTCCCTGTGCCTCGACACATATTGATCGTTGTGGCTGAAGACGTTGATGCT Conus_sanguinolentus_4 CCGCAGCCAACGCCAAATTGTCTGAGCGGTTGGAT---------------CCATGCTGTAGGGAGCCTCCCTGTGCCTCGACACATACTGATATTTGTACCAGAAGGCGTTGATGCT Conus_sanguinolentus_8 CCGCAGCCAACAACAAAGCGACTGACCTGATGGCTCTGCGTTAC---CATGAATGCTGTAAAAATCCTCCCTGTAGAAACAAGCACCCAGACTTGTGTGGCGGAAGACGCAGATGCT ; END; BEGIN TREES; Title Additional_File_2; LINK Taxa = Taxa; TRANSLATE 29 Conus_diadema_1, 1 Conus_diadema_3, 11 Conus_diadema_10, 2 Conus_lividus_2, 3 Conus_lividus_3, 6 Conus_lividus_9, 7 Conus_lividus_10, 8 Conus_lividus_11, 15 Conus_lividus_24, 16 Conus_lividus_25, 17 Conus_lividus_26, 18 Conus_lividus_27, 13 Conus_lividus_29, 19 Conus_lividus_32, 27 Conus_lividus_41, 28 Conus_lividus_42, 25 Conus_lividus_45, 22 Conus_lividus_46, 23 Conus_lividus_47, 24 Conus_lividus_48, 26 Conus_lividus_51, 30 Conus_quercinus_1, 14 Conus_quercinus_6, 20 Conus_quercinus_7, 21 Conus_quercinus_8, 5 Conus_sanguinolentus_1, 4 Conus_sanguinolentus_2, 9 Conus_sanguinolentus_3, 10 Conus_sanguinolentus_4, 12 Conus_sanguinolentus_8; TREE 'con 50 majrule+' = ((29:0.128962,30:0.063558)0.57:0.169428,(((27:0.014998,28:0.014834)0.98:0.101008,(26:0.073598,(25:0.039311,(22:0.015524,(23:0.015225,24:0.010889)1.00:0.055983)0.52:0.033862)0.82:0.040753)0.99:0.135989)0.94:0.141576,(19:0.215688,(11:0.039818,12:0.025571)1.00:0.260155,(13:0.255514,14:0.053835)1.00:0.130001,(20:0.010042,21:0.018036)1.00:0.099747,((15:0.010111,16:0.016122)0.93:0.032843,(17:0.009368,18:0.017893)0.87:0.027296)0.98:0.088667,((10:0.055314,(7:0.00977,8:0.029583,9:0.009863)0.89:0.045852)1.00:0.232248,(6:0.180759,(1:0.098862,(2:0.010152,5:0.010015,(3:0.020198,4:0.031181)0.99:0.03681)0.65:0.041839)1.00:0.181182)0.88:0.118725)0.79:0.124849)0.57:0.08995)0.79:0.213421); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 117; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 117; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 117; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1400549787273; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3496232766330809473; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 788740428946561157; mqVersion 275; checksumv 0 3 1995053819 null getNumChars 117 numChars 117 getNumTaxa 30 numTaxa 30 short true bits 15 states 15 sumSquaresStatesOnly 67371.0 sumSquares 67371.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 235; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1111 549; setLocation 132 103; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;