#NEXUS [written Mon Jun 09 19:17:55 PDT 2014 by Mesquite version 2.75 (build 566) at dhcp-206-87-197-53.ubcsecure.wireless.ubc.ca/206.87.197.53] BEGIN TAXA; TITLE 'Cystopteridacae_Allopolyploidy_trngr'; DIMENSIONS NTAX=28; TAXLABELS Acystopteris_taiwaniana_4870_Taiwan_Nantou Acystopteris_tenuisecta_4831_Taiwan_Nantou Cystopteris_bulbifera_5836_Ariz_Coconino Cystopteris_bulbifera_6116_Ont_Durham Cystopteris_fragilis_5316_CR_CdelaM_3400m Cystopteris_fragilis_5840_Sweden Cystopteris_fragilis_5851_Utah_SLC_3000m Cystopteris_fragilis_5951_Colorado Cystopteris_fragilis_6380_Arg_SanLuis_1200m Cystopteris_fragilis_7009_Iceland_Ive Cystopteris_fragilis_7248_Swiss_Bern Cystopteris_fragilis_7625_Taiwan_Heping Cystopteris_montana_5839_NFLD_StBarbeN Cystopteris_moupinensis_4861_Taiwan_Nantou_3300m Cystopteris_protrusa_5838_Miss Cystopteris_tasmanica_6379_NZ_Otago Cystopteris_tenuis_6387_Vermont_Chittendon_100m Gymnocarpium_appalachianum_7639_Virg_Highland_1100m Gymnocarpium_appalachianum_7800_Virg_Page_1200m Gymnocarpium_disjunctum_4710_Alaska_Kenai Gymnocarpium_disjunctum_7751_Wash_Snohomish_500m Gymnocarpium_dryopteris_5837_Finland_VarsinaisSuomi Gymnocarpium_dryopteris_7981_Japan_Hokkaido_600m Gymnocarpium_dryopteris_8031_Ont_TB Gymnocarpium_jessoense_8120_Russia_Sakh_100m Gymnocarpium_jessoense_6979_Ont_TB Gymnocarpium_remotepinnatum_4862_Taiwan_Nantou_3300m Gymnocarpium_robertianum_7945_Norway_Fauske_100m ; END; BEGIN CHARACTERS; TITLE 'Cystopteridaceae_trngr_alignment'; DIMENSIONS NCHAR=1165; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Acystopteris_taiwaniana_4870_Taiwan_Nantou ???????????????????????????????????AGGGATCTTTC-AACTGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTTTCCTTACCAGTTATTGGTATTGGTATAGAAAACGGATGCGCCATTCCTGTTACTATTGTACTTCGGAGGTCGTACAGGTTAGTGACGAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAAAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AGAAAAAAA--TTCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCAATGAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTGTTGGGAGTAAAAATAGAGAACGAAGTAAATAAAAGGGAGAAAAAGTAATTGATAAAACTATTTTTTT----CCTCTTTTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAAACGTAAGCAAAACTGACATGGATTTTATGGATGCCACTTATTGAAAG-------TGGGACGAT----TCCCTCCTCCTCGAAC--------------GGTGAAAAA-AGGGTAGAAAAAAGAGAAGCCCC-CAAATATCCCAATACGAAGAATATCCCAATACGAA-GAAAACCTCGATGCCCACAAAAAAGGTAATTTCAACGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTCATCTTCGGGTTGTTTCGTTTAGGTAGGTTGGTATATGTAGACGAATTCTACTCCAGTTTTGGACTATTTATCCTTCCTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCACAACCTTTTATTGCCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACCAAGAATCTTGGCGCCCTATTCAGATTAACCCCC---------GATTGCGTCGTGAACAAACGGAAAAGTCAGTTTGTTCACGATTTGGGAGCTAACCCATTGGCGTATTCACCACC---AACCAAGAAGGGAAAAGAACAGA Acystopteris_tenuisecta_4831_Taiwan_Nantou ???????????????????????????????????????????????AACTGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTTTCCTTACCAGTTATT------GGTATAGAAAACGGATGCGCCATTCCTGTTACTATTGCACTTCGGAAGTCGTACAGGTTAGTGACGAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAAAAGAAAAACATAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGA-AGAAAAAAA--TTCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATTAGGATTATCATGCACTTTTCTGATTAAGCAATGAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTGTTGGGAGTAAAAATAGAGAACGAAGTAAATAAAAGGGAGAAAAAGCAATTGATAAAACTTTTGTTTTTT--CCTCTTTTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAAACGTAAGCAAAACTGACATGGATTTTATGGATGCCACTTATTGAAAG-------TGGGACGAT----TCCCTCCTCCTCGAAC--------------GGTGAAAAA-GGGGTAGAAAAAAGAGAAGCCCC-CAAATATCCCAATAC-----------------GAA-GAAAGCCTCGATGCCCAC---AAAGGTAATTTCAACGTGTGATATTCTCCCTCCGATTGAGGGAAAAGAAACAACCCACTCATCTTCCGGTTGTTTCATTTAGGTAGGTTGGTATATGTAGACGAATTCTACTCCAGTTTTGGACTATTTATCCATCCTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCACAACCTTTTGTTGTCGCCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACCAAGAATCTTGGCGCCCTATTCAGATTAACCCCC---------GATTGCGTCGTGAACAAACGGAAAACTCAGTTTGTTCACGATTTGGGAGCTAACCCGTTGGCGTATTCACCACC---AATCAAGAAGGGAAAAGAACAGA Cystopteris_bulbifera_5836_Ariz_Coconino ????????????????????????????????????????????????ACTGAATCTTAACTAAATAAAGAAGCTTTATTTTTACAGAAGTACATCTATTTTTCCTTACCAGTTATTAGTAGTGGTATAGGAAACGGATGCGCCATTCCTGTTACTATTGTACCTCGGAAGTCGTACCGATTAGTGACAAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAAAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AAAAGAAAAAATCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCGATGAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGAGAGTAGAAATAGAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTT----CCTCTTTTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAG-------TGGGACGAT----TATCTCCTCCTCGGAC--------------GGGGAAAAA-GGGGTAGAAAAAAGAGAAGCCCC-CAAATATCCCAATAT-----------------GGA-GAAAGCCTCGATGCCCAC---AAAAGTAACTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCAGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTCCAGTTTCGGACTATCTATCCCTCCTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCACGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATGACCTTTAGCCTTGCA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TCACGATTTGGGAGCTAACCCGTTGGCGTATTCGCCACC---AACCAGGGAGATAAAAGAACAGA Cystopteris_bulbifera_6116_Ont_Durham ???????????????????????????????????????????????AACTGAATCTTAACTAAATAAAGAAGCTTTATTTTTACAGAAGTACATCTATTTTTCCTTACCAGTTATTAGTAGTGGTATAGGAAACGGATGCGCCATTCCTGTTACTATTGTACCTCGGAAGTCGTACCGATTAGTGACAAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAAAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AAAAGAAAAAATCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCGATGAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGAGAGTAGAAATAGAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTT----CCTCTTTTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAG-------TGGGACGAT----TATCTCCTCCTCGGAC--------------GGGGAAAAA-GGGGTAGAAAAAAGAGAAGCCCC-CAAATATCCCAATAT-----------------GGA-GAAAGCCTCGATGCCCAC---AAAAGTAACTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCAGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTCCAGTTTCGGACTATCTATCCCTCCTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCACGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACCAAGAATCCTGGCGCCCCATTAAGATTAACCCCC---------AATTGCGTCGTGAACAAACTGAAGTTTTCGTTTGTTCACGATTTGGGAGCTAACCCGTTGGCGTATTCGCCACC---AACCAGGGAGATAAAAGAACAGA Cystopteris_fragilis_5316_CR_CdelaM_3400m ????????????????????????????????????????????????ACTGAATCTTAACTAAATAAAGAAGCTTTATTTCTACAGAAGTACATCTATTTCTCCTTACCAGTTATTGGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTACCGTACCTCGAAAGTCGTACCGATTAGTGACAAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAGAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AGAATAAAAAATCCAAGCTTGGAAGTTAGAAGTAGATTGAGCCTGGTTTATCAGGATTATCATACACTTTTCTGACTAAGCAATAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAAAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTTT--CCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAGCTGAAAGTGGGACGAT----TCTCTCCTCCTCGGAC--------------GGGGGA-AA-GGGGTAGAAAAAAGAGAAGCTCC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGACGCCCAC---AGAAGTAATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTTCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGATCATACTAAGAATCCTGCCGCCCTATTCAGATTAACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGTTAACGCGTTGGCGTATTCACCACC---AACCAAGGAGAGAAAAGAACAGA Cystopteris_fragilis_5840_Sweden ???????????????????????????????????AGGGATCTTTC-AACTGAATCTTAACTAAATAAAGAAGCTTTATTTCTACAGAAGTACATCTATTTCTCCTTACCAGTTATTGGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTATCGTACCTCGAAAGTCGTACCGATTAGTGACAAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AGAAGAAAAAATCCAAGCTTGGAAGTTAGAAGTAGATTGAGCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCAATAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAAAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTTTT-CCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAGCTGAAAGTGGGACGAT----TCTCTCCTCCTCGGAC--------------GGGGGA-AA-GGGGTAGAAAAAAGAGAAGCTCC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGACGCCCAC---AGAAGTAATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTTCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGATCATACTAAGAATCCTGCCGCCCTATTCAGATTAACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGTTAACGCGTTGGCGTATTCACCACC---AACCAAGGAGAGAAAAGAACAGA Cystopteris_fragilis_5851_Utah_SLC_3000m ???????????????????????????????????AGGGATCTTTC-AACTGAATCTTAACTAAATAAAGAAGCTTTATTTCTACAGAAGTACATCTATTTCTCCTTACCAGTTATTGGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTATCGTACCTCGAAAGTCGTACCGATTAGTGACAAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AGAAGAAAAAATCCAAGCTTGGAAGTTAGAAGTAGATTGAGCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCAATAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAAAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTTTT-CCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAGCTGAAAGTGGGACGAT----TCTTTCCTCCTCGGAC--------------GGGGGA-AA-GGGGTAGAAAAAAGAGAAGCTCC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGATGCCCAC---AGAAGTAATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTTCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCACGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGATCATACTAAGAATCCTGCCGCCCTATTCAGATTAACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGTTAACGCGTTGGCGTATTCACCACC---AACCAAGGAGAGAAAAGAACAGA Cystopteris_fragilis_5951_Colorado ???????????????????????????????????????????????AACTGAATCTTAACTAAATAAAGAAGCTTTATTTCTACAGAAGTACATCTATTTTTCCTTACCAGTTATTGGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTACCGTACCTCGAAAGTCGTACCGATTAGTGACGAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AAAAGAAAAAATCCAAGCTTGAAAGTTAGAAGTAGATTGAGCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCAACAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAGAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTTT--CCTCTTCTCAAAGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAGCTGAAAGTCGGACGAT----TCTCTCCTCCTCGGAC--------------GGGGAA-TAGGGAGTAGAAAAAAGAGAAGCTCC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGACGCCCAC---AGAAGTTATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTTCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGATCATACTAAGAATCCTGTCGCCCTA---------ACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGTTAACGCGTTGGCGTATTCACCACC---AACCAAGGAGAGAAAAGAACAGA Cystopteris_fragilis_6380_Arg_SanLuis_1200m ???????????????????????????????????????????????AACTGAATCTTAACTAAATAAAGAAGCTTTATTTCTACAGAAGTACATCTATTTCTCCTTACCAGTTATTGGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTACCGTACCTCGAAAGTCGTACCGATTAGTGACAAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAGAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AGAATAAAAAATCCAAGCTTGGAAGTTAGAAGTAGATTGAGCCTGGTTTATCAGGATTATCATACACTTTTCTGACTAAGCAATAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAAAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTTT--CCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAGCTGAAAGTGGGACGAT----TCTCTCCTCCTCGGAC--------------GGGGGA-AA-GGGGTAGAAAAAAGAGAAGCTCC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGACGCCCAC---AGAAGTAATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTTCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGATCATACTAAGAATCCTGCCGCCCTATTCAGATTAACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGTTAACGCGTTGGCGTATTCACCACC---AACCAAGGAGAGAAAAGAACAGA Cystopteris_fragilis_7009_Iceland_Ive AAGTGCGATTCGTTTCATATTGATTTCAGTAGTTAAGGGATCTTTCAAACTGAATCTTAACTAAATAAAGAAGCTTTATTTCTACAGAAGTACATCTATTTTTCCTTACCAGTTATTGGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTATCGTACCTCGAAAGTCGTACCGATTAGTGACGAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AAAAGAAAAAATCCAAGCTTGAAAGTTAGAAGTAGATTGAGCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCAATAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAGAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTTTT-CCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAGCTGAAAGTCGGACGAT----TCTCTCCTCCTCGGAC--------------GGGGAA-TAGGGAGTAGAAAAAAGAGAAGCTCC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGACGCCCAC---AGAAGTTATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTTCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGATCATACTAAGAATCCTGTCGCCCTA---------ACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGTTAACGCGTTGGCGTATTCACCACC---AACCAAGGAGAGAAAAGAACAGA Cystopteris_fragilis_7248_Swiss_Bern AAGTGCGATTCGTTTCATATTGATTTCAGTAGTTAAGGGATCTTTCAAACTGAATCTTAACTAAATAAAGAAGCTTTATTTCTACAGAAGTACATCTATTTCTCCTTACCAGTTATTGGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTATCGTACCTCGAAAGTCGTACCGATTAGTGACAAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AGAAGAAAAAATCCAAGCTTGGAAGTTAGAAGTAGATTGAGCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCAATAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAAAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTTTT-CCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAGCTGAAAGTGGGACGAT----TCTCTCCTCCTCGGAC--------------GGGGGA-AA-GGGGTAGAAAAAAGAGAAGCTCC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGACGCCCAC---AGAAGTAATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTTCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGATCATACTAAGAATCCTGCCGCCCTATTCAGATTAACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGTTAACGCGTTGGCGTATTCACCACC---AACCAAGGAGAGAAAAGAACAGA Cystopteris_fragilis_7625_Taiwan_Heping AAGTGCGATTCGTTTCATATTGATTTCAGTAGTTAAGGGATCTTTCAAACTGAATCTTAACTAAATAAAGAAGCTTTATTTCTACAGAAGTACATCTATTTTTCCTTACCAGTTATTGGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTATCGTACCTCGAAAGTCGTACCGATTAGTGACGAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AAAATAAAAAATCCAAGCTTGAAAGTTAGAAGTAGATTGAGCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCAATAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAGAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTTTTTCCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAGCTGAAAGTCGGACGAT----TCTCTCCTCCTCGGAC--------------GGGGAA-TAGGGAGTAGAAAAAAGAGAAGCTCC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGACGCCCAC---AGAAGTTATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTTCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGATCATACTAAGAATCCTGTCGCCCTA---------ACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGTTAACGCGTTGGCGTATTCACCACC---AACCAAGGAGAGAAAAGAACAGA Cystopteris_montana_5839_NFLD_StBarbeN ???????????????????????????????????AGGGATCTTTC-AACTGAACCTTAACTAAATAAAGAAGCTTTATTTTTACAGAAGTACATCTATTTTTCCTTACCAGTTATTGGTAGTGGTATAGGAAACGGATGCGCCATTCCTGTTACTATTGTACCTCGGAAGTCGTACCAGTTAGTGACAAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAA--AAAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AAAATAAAAAATCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCAGGATTGTCATGCACTTTTCTGATTAAGCGATAAAAATTGCTTCCGAGACTCGGTGGAAAATATTTCCCTAAGGATTTTTGGGAGTAAAAATAGAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTT---CCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAG-------TGGGACGAT----TCTCTCCTCCTCGGAC--------------GGGGAAGAA-GGGGTAGAAAAAAGAGAAGCCCCATAAATATCCTAATAT-----------------GGA-GAAAGCCTCGATGCCCAC---AAAAGTAATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTCCAGTTTCGGACTATTTATCCCTCCTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCATAACCATTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAAGAATCCTGGCGCCCTATTCAGATTAACTCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGCTAACCCGTTGGCGTATTCGCCACC---AACCAAGGAGAGAAAAGAACAGA Cystopteris_moupinensis_4861_Taiwan_Nantou_3300m ???????????????????????????????????AGGGATCTTTC-AACTGAATCTTAACTAAATAAAGAAGCTTTATTTTTACAGAAGTACATCTATTTTTCCTTACCAGTTATTAGTAGTGGTATAGGAAACGGATGCGCCATTCCTGTTACTATTGTACCTCGGAAGTCGTACCGATTAGTGACAAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AAAAAAAAAA-TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCGATAAAAATTGCTTCCGAAACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAAAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAATTATTTTTTTC---CCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAG-------TGGGACGAT----TCTCCCCTCCTCGGAC--------------GGGAAAAAA-GGGGTAGAAAAAAGAGAAGCCCC-CAAATATCCCAATAT-----------------GGA-GAAAGCCTCGATGCCCAC---AAAAGTAATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCAATTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTCCAGTTTCGGACTATCTATCCCTCCTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCGTAACTATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAAGAATCCTGGCGCCCCATCCAGATTAACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTTAGTTTGTTCACGATTTGGGAGCTAACCCGTTGGCGTATTCGCCACCACCAACCAGGGAGATAAAAGAACAGA Cystopteris_protrusa_5838_Miss ??????????????????????????????????????????????????????????????????AAAGAAGCTTTATTTCTACAGAAGTACATCTATTTTTCCTTACTAGTTATTGGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTATCGTACCTCGGAAGTCGTACCGATTAGTGACAAAGCGGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AAAAGAAAAAATCCAAGCTTGAAAGTTAGAAGTAGATTGATCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCAATAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGTAGTAGAAATAGAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTT---CCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAGCTGAAAGTGGGACGAT----TCTCTCCTCCTCGGAC---------GGGGGGGGGGGGAA-GGGGTAGAAAAAAAAGAAGCTCC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGACGCCCAC---AGAAGTAATTTCAATTTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATATAGACGAATTCTACTCCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGAC????????????????????????????????????????????????????????????????????????????????????????????TCCC---------AAAT----CGTGAACAAACGAAAGTTTTCGTTTGTTCACGATTTGGGAGTTAACGCGTTGGCGTATTCACCACC---AACCAAAGAGAGAAAAGAACAGA Cystopteris_tasmanica_6379_NZ_Otago ???????????????????????????????????????????????AACTGAATCTTAACTAAATAAAGAAGCTTTATTTCTACAGAAGTACATCTATTTTTCCTTACCAGTTAGTAGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTATCGTACCTCGAAAGTCGTACCGATTAGTGACAAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AAAAGAAAAAATCCAAGCTTGGAAGTTAGAAGTAGATTGAGCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCAATAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAGAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTTTT-TCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGGAAGCTGAAAGTGGGACGAT----TCTCTCCTCCTCGGAC--------------GGGGGA-AA-GGGGTAGAAAAAAGAGAAGCTAC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGACGCCCAC---AGAAGTAATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTTCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGTCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGATCATACTAAGAATCCTGTCGCCCTATTCAGATTAACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGTTAACACGTTGGCGTATTCACCACC---AACCAAGGAGAGAAAAGAACAGA Cystopteris_tenuis_6387_Vermont_Chittendon_100m ???????????????????????????????????????????????AACTGAATCTTAACTAAATAAAGAAGCTTTATTTCTACAGAAGTACATCTATTTTTCCTTACCAGTTATTGGTAGTGGTATAGGAAACGGATACGCCATTCCTGTTACTATCGTACCTCGAAAGTCGTACCGATTAGTGACGAAGCAGGATTATTTTGGTATGCAAACAACTTGGGACGATTCAAGAAGAAAAACTAAGGATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGG-AAAAGAAAAAATCCAAGCTTGAAAGTTAGAAGTAGATTGAGCCTGGTTTATCAGGATTATCATGCACTTTTCTGATTAAGCAATAAAAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGGGAGTAGAAATAGAGAACGAAGTAAATAAAAGAGAGAAAAAGCAATTGATAAAACTATTTTTTTTTT-CCTCTTCTCAAGGGATCATCTAAGAAGTATATTCATGCTACACGACCAAGACGTAAGCAAAACTGACATGGATTTTATGGATGCCACCTACTGAAAGCTGAAAGTCGGACGAT----TCTCTCCTCCTCGGAC--------------GGGGAA-TAGGGAGTAGAAAAAAGAGAAGCTCC-CAAATATCCCAATAT-----------------GGA-TAAAGCCTCGACGCCCAC---AGAAGTTATTTCAATGTGTGATATTCTCCCTTCGATTGAGGGAAAAGAAACAACCCACTAATCTTCCGGTTGTTTCGTTCAGGTAGGTTGGTATATGTAGACGAATTCTACTTCAGTTTCGGACTATCTATCCCTACTCCCCCTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCGTAACCATTTGTTATCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGATCATACTAAGAATCCTGTCGCCCTA---------ACCCCC---------AATTGCGTCGTGAACAAACGAAAACTTCAGTTTGTTCACGATTTGGGAGTTAACGCGTTGGCGTATTCACCACC---AACCAAGGAGAGAAAAGAACAGA Gymnocarpium_appalachianum_7639_Virg_Highland_1100m AAGTGCGATTCGTTTCATACTGATTTCAATAGTTAAGGGATCTTTCAAACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTCTCCTTACCAGTTATT------GGTATGGAAAAAGGATGCGCCATTCCTGTTACTACTGCACTTCGGAAGTCGTACCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAAAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGCTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCATGCACTTTTCCGATTAGGCGATAACAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTCGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATAAAACTATATTCT-----CCTTCTATCAAGGGATCATCTAAGAAGTATATTCACGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACTTACTGAAAG-------TGGGGTGAT----TCCCTCCTCCCCGAAC--------------GGTGAAAAA-AGGGTGGAAGAAAGGGAAACCCC-CAAATATCCCAATAGGA---------------GGAGGAAAGCTTTGATGCTCGC---AAAAGTAATTTTGACGTGTGATATGCTATCCTCGATTGAGGGGAAAGAAGCAACCCACTCATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCACCCTAGTTTCGGACTACTTATCCTTCCCTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCATAACCATTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTCACCCATCGATTGCGTCGTGAACAAACAAAAAATTTAGTTTGTTCACGATTTGGAAGCTAATCCGTCGGCGTATTGATCACC---AACCAAGAAGAGAAAAGAACAGA Gymnocarpium_appalachianum_7800_Virg_Page_1200m AAGTGCGATTCGTTTCATACTGATTTCAATAGTTAAGGGATCTTTCAAACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTCTCCTTACCAGTTATT------GGTATGGAAAAAGGATGCGCCATTCCTGTTACTACTGCACTTCGGAAGTCGTACCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAAAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGCTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCATGCACTTTTCCGATTAGGCGATAACAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTCGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATAAAACTATATTCT-----CCTTCTATCAAGGGATCATCTAAGAAGTATATTCACGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACATACTGAAAG-------TGGGGTGAT----TCCCTCCTCCCCGAAC--------------GGTGAAAAA-AGGGTGGAAGAAAGGGAAACCCC-CAAATATCCCAATAGGA---------------GGAGGAAAGCTTTGATGCTCGC---AAAAGTAATTTTGACGTGTGATATGCTATCCTCGATTGAGGGGAAAGAAGCAACCCACTCATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCACCCTAGTTTCGGACTACTTATCCTTCCCTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCATAACCATTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTCACCCATCGATTGCGTCGTGAACAAACAAAAAATTTAGTTTGTTCACGATTTGGAAGCTAATCCGTCGGCGTATTGATCACC---AACCAAGAAGAGAAAAGAACAGA Gymnocarpium_disjunctum_4710_Alaska_Kenai ???????????????????????????????????????????????AACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTCTCCTTACCAGTTATT------GGTATGGAAAAAGGATGCGCCATTCCTGTTACTACTGCACTTCGGAAGTCGTGCCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAGAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCATGCACTTCTGCGATTAGGCGATAACAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTCGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATAAAACTATATTCT-----CCTCCTCCCAAAGGATCATCTAAGAAGTATATTCATGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACTTACTGAAAG-------TGGGGCGAT----TCCCTCCTCCCCGAACGGTAGAAAC-----GGTAAAAAA-GGGGTGGAAGAAAGGGTAACCCCTCAAATATCCCAATATGA---------------GGAGGAAAGCTTCGATGCTCGT---AAAAGTAATTTTAACGTGTGATATGCTACCCTCGATTGAGGGGAAAGAAGCAACCCACTGATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCACCCTAGTTTCGGACTACTTATCCTTCCTTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCATAACCATTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTCACCCATCGGTTGCGTCGTGAACAAACAAAAACTTTAGTTTGTTCACGATTTGGAAGCTAATCCGTCGGCGTATTCATCACC---AACCAAGAAGAGAAAAGAACAGA Gymnocarpium_disjunctum_7751_Wash_Snohomish_500m AAGTGCGATTCGTTTCATACTGATTTCAATAGTTAAGGGATCTTTCAAACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTTTCCTTACCAGTTATT------GGTATGGAAAAAGGATGCGCCATTCCTGTTACTACTGCACTTCGGAAGTCGTGCCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAGAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCATGCACTTCTGCGATTAGGCGATAACAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTCGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATAAAACTATATTCT-----CCTCCTCCCAAAGGATCATCTAAGAAGTATATTCATGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACATACTGAAAG-------TGGGGCGAT----TCCCTCCTCCCCGA?CGGTAGAAAC-----GGTAAAAAA-GGGGTGGAAGAAAGGGTAACCCCTCAAATATCCCAATATGA---------------GGAGGAAAGCTTCGATGCTCGT---AAAAGTAATTTTAACGTGTGATATGCTACCCTCGATTGAGGGGAAAGAAGCAACCCACTGATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCACCCTAGTTTCGGACTACTTATCCTTCCTTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCATAACCATTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTCACCCATCGGTTGCGTCGTGAACAAACAAAAACTTTAGTTTGTTCACGATTTGGAAGCTAATCCGTCGGCGTATTCATCACC---AACCAAGAAGAGAAAAGAACAGA Gymnocarpium_dryopteris_5837_Finland_VarsinaisSuomi ???????????????????????????????????????????????AACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTTTCCTTACCAGTTATT------GGTATGGAAAAAGGATGCGCCATTCCTGTTACTACTGCACTTCGGAAGTCGTGCCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAGAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCATGCACTTCTGCGATTAGGCGATAACAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTCGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATAAAACTATATTCT-----CCTCCTCCCAAAGGATCATCTAAGAAGTATATTCATGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACTTACTGAAAG-------TGGGGCGAT----TCCCTCCTCCCCGAACGGTAGAAAC-----GGTAAAAAA-GGGGTGGAAGAAAGGGTAACCCCTCAAATATCCCAATATGA---------------GGAGGAAAGCTTCGATGCTCGT---AAAAGTAATTTTAACGTGTGATATGCTACCCTCGATTGAGGGGAAAGAAGCAACCCACTGATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCACCCTAGTTTCGGACTACTTATCCTTCCTTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCATAACCTTTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTCACCCATCGGTTGCGTCGTGAACAAACAAAAACTTTAGTTTGTTCACGATTTGGAAGCTAATCCGTCGGCGTATTCATCACC---AACCAAGAAGAGAAAAGAACAGA Gymnocarpium_dryopteris_7981_Japan_Hokkaido_600m AAGTGCGATTCGTTTCATACTGATTTCAATAGTTAAGGGATCTTTCAAACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTTTCCTTACCAGTTATT------GGTATGGAAAAAGGATGCGCCATTCCTGTTACTACTGCACTTCGGAAGTCGTGCCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAGAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCATGCACTTCTGCGATTAGGCGATAACAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTCGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATAAAACTATATTCT-----CCTCCTCCCAAAGGATCATCTAAGAAGTATATTCATGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACTTACTGAAAG-------TGGGGCGAT----TCCCTCCTCCCCGAACGGTAGAAAC-----GGTAAAAAA-GGGGTGGAAGAAAGGGTAACCCCTCAAATATCCCAATATGA---------------GGAGGAAAGCTTCGATGCTCGT---AAAAGTAATTTTAACGTGTGATATGCTACCCTCGATTGAGGGGAAAGAAGCAACCCACTGATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCACCCTAGTTTCGGACTACTTATCCTTCCTTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCATAACCATTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTCACCCATCGGTTGCATCGTGAACAAACAAAAACTTTAGTTTGTTCACGATTTGGAAGCTAATCCGTCGGCGTATTCATCACC---AACCAAGAAGAGAAAAGAACAGA Gymnocarpium_dryopteris_8031_Ont_TB AAGTGCGATTCGTTTCATACTGATTTCAATAGTTAAGGGATCTTTCAAACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTTTCCTTACCAGTTATT------GGTATGGAAAAAGGATGCGCCATTCCTGTTACTACTGCACTTCGGAAGTCGTGCCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAGAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGTTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCATGCACTTCTGCGATTAGGCGATAACAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTCGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATAAAACTATATTCT-----CCTCCTCCCAAAGGATCATCTAAGAAGTATATTCATGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACATACTGAAAG-------TGGGGCGAT----TCCCTCCTCCCCGAACGGTAGAAAC-----GGTAAAAAA-GGGGTGGAAGAAAGGGTAACCCCTCAAATATCCCAATATGA---------------GGAGGAAAGCTTCGATGCTCGT---AAAAGTAATTTTAACGTGTGATATGCTACCCTCGATTGAGGGGAAAGAAGCAACCCACTGATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCACCCTAGTTTCGGACTACTTATCCTTCCTTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCATAACCTTTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTCACCCATCGGTTGCGTCGTGAACAAACAAAAACTTTAGTTTGTTCACGATTTGGAAGCTAATCCGTCGGCGTATTCATCACC---AACCAAGAAGAGAAAAGAACAGA Gymnocarpium_jessoense_8120_Russia_Sakh_100m AAGTGCGATTCGTTTCATACTGATTTCAATAGTTAAGGGATCTTTCAAACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTCTCCTTACCAGTTATT------GGTATGGAAAAAGGATGCGCCATTCCTGTTACTACTGCACTTCGGAAGTCGTACCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAAAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGCTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCATGCACTTTTCCGATTAGGCGATAACAATCGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTCGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATAAAACTATATTCT-----CCTTCTATCAAGGGATCATCTAAGAAGTATATTCACGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACATACTGAAAG-------TGGGGTGAT----TCCCTCCTCCCCGAAC--------------GGTGAAAAA-AGGGTGGAAGAAAGGGAAACCCC-CAAATATCCCAATAGGA---------------GGAGGAAAGCTTTGATGCTCGC---AAAAGTAATTTTGACGTGTGATATGCTATCCTCGATTGAGGGGAAAGAAGCAACCCACTCATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCACCCTAGTTTCGGACTACTTATCCTTCCCTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTGCCATGTTCGGTTCTGGATTAGCGACGCCATAACCATTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTAACCCATCGATTGCGTCGTGAACAAACAAAAAATTTAGTTTGTTCACGATTTGGAAGCTAATCCGTCGGCGTATTGATCACC---AACCAAGAAGAGAAAAGAACAGA Gymnocarpium_jessoense_6979_Ont_TB AAGTGCGATTCGTTTCATACTGATTTCAATAGTTAAGGGATCTTTCAAACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTCTCCTTACCAGTTATT------GGTATGGAAAAAGGATGCGCCATTCCTGTTACTACTGCACTTCGGAAGTCGTACCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAAAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGCTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCATGCACTTTTCCGATTAGGCGATAACAATCGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTCGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATAAAACTATATTCT-----CCTTCTATCAAGGGATCATCTAAGAAGTATATTCACGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACTTACTGAAAG-------TGGGGTGAT----TCCCTCCTCCCCGAAC--------------GGTGAAAAA-AGGGTGGAAGAAAGGGAAACCCC-CAAATATCCCAATAGGA---------------GGAGGAAAGCTTTGATGCTCGC---AAAAGTAATTTTGACGTGTGATATGCTATCCTCGATTGAGGGGAAAGAAGCAACCCACTCATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCACCCTAGTTTCGGACTACTTATCCTTCCCTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTGCCATGTTCGGTTCTGGATTAGCGACGCCATAACCATTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTAACCCATCGATTGCGTCGTGAACAAACAAAAAATTTAGTTTGTTCACGATTTGGAAGCTAATCCGTCGGCGTATTGATCACC---AACCAAGAAGAGAAAAGAACAGA Gymnocarpium_remotepinnatum_4862_Taiwan_Nantou_3300m ???????????????????????????????????AGGGATCTTTC-AACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACATCTATTTCTCCTTACCAGTTATT------GGTATGGAAAAAGGATGCGCCATTCCTGTTACTACTGCACTTCGGAAGTCGTACCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAAAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGCTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCATGCACTTTTCCGATTAGGCGATAACAATTGCTTCCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTCGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATAACACTATATTCT-----CCTTCTATCAAGGGATCATCTAAGAAGTATATTCACGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACTTACTGAAAG-------TGGGGCGAT----TCCCTCCTCCTCGAAC--------------GGTGAAAAA-AGGGTGGAAGAAAGGGAAACCCC-CAAATATCCCAATATGA---------------GGAGGAAAGCTTCGATGCTCGC---AAAAGTAATTTTGACGTGTGATATGCTATCCTTGATTGAGGGGAAAGAAGCAACCCACTCATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCGCCCTAGTTTCGGACTACTTATCCTTCCCTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCATAACCATTTGTTGCCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTCACCCATCGATTGCGTCGTGAACAAACAAAAACTTTAGTTTGTTCACGATTTGGAAACTAATCCGTCGGCGTATTGATCACC---AACCAGGAAGAGAAAAGAACAGA Gymnocarpium_robertianum_7945_Norway_Fauske_100m AAGTGCGATTCGTTTCATACTGATTTCAATAGTTAAGGGATCTTTCAAACCGAATCTTAACTAAATCAAAAAGCTTTATTTTTACAGAAGTACACCTATTTTTCCTTACCAGTTATT------GCTATGGAAAAAGGATGCGCCATTCCTGTTACCACTGCACTTCGGAAGTCGTACCGGTTGGTGACGAAGCGGGATTATTTTGGTACGCAAAAAACTTGGGACAATTCAG--AGAAAAACTGAGAATCTATGGGTAGACATCTAAAATATTTGCTTCATCGTCACTGAACCTTGGGAGAAGAAAA--TCCAAGCTTGAAAGTTAGAAATAGATTGATCCTGGTTTATCGGGATTATCGTGCACTTTTCCGATTAGGCAATAACAATTGCTTTCGAGACTCGGTGAAAAATATTTTCCTAAGGATTTTTGAGAGTAAAAATAAAGAACGAAGTAAATAAAGGAGAGAAA--GCAATTTATGAAACTATATTCT-----CCTCCTCCCAAGGGATCATCTAAGAAGTATATTCACGCTATACGACCAAGACGTAAGCAAAACTGACATAGATTTTATGGATGCCACTTACTGAAAG-------TGGGGCGATCGATTCCCTCCTCCCCGAAC--------------GGTGAAAAA-AGG-TGGAAGAAAGGGAAACTCC-CAAATATCCCAATATGA---------------GGAGTAAAGCTTCGATGCTCGC---AAAAGTAATTTTGACGTGTGATATGCTACCCTCGATTGAGGGGAAAGAAGCAACCCACTCATCCTCCGATTGTTTTGGTTAACTAGGTTGGTATATGTAAACGAATTCCACCCTAGTTTCGGACTACTTATCCTTCCCTCCCTTCCATAAAGGAGCCGAATGGTCGGAAACTACCATGTTCGGTTCTGGATTAGCGACGCCATAACCATTTGTTGTCGTCGACTATAACCTTTAGCCTTCCAAGCTACTGATGCGGGTTCGATTCCCGCTACCCGCTGGTCATACTAGGAATCCCGGCGCCCCAGTCAAATTAACCCCCTCACCCATCGATTGCGTCGTGAACAAACAAAAACTTTAGTTTGTTCACGATTTGGAAGCTAATCCGTCGGCGTATTCATCACT---AACCAAGAAGAGAAAAGAACAGA ; END; BEGIN TREES; Title 'Cystopteridaceae_trngr_ML_tree'; LINK Taxa = 'Cystopteridacae_Allopolyploidy_trngr'; TRANSLATE 1 Acystopteris_taiwaniana_4870_Taiwan_Nantou, 2 Acystopteris_tenuisecta_4831_Taiwan_Nantou, 3 Cystopteris_bulbifera_5836_Ariz_Coconino, 4 Cystopteris_bulbifera_6116_Ont_Durham, 5 Cystopteris_fragilis_5316_CR_CdelaM_3400m, 6 Cystopteris_fragilis_5840_Sweden, 7 Cystopteris_fragilis_5851_Utah_SLC_3000m, 8 Cystopteris_fragilis_5951_Colorado, 9 Cystopteris_fragilis_6380_Arg_SanLuis_1200m, 10 Cystopteris_fragilis_7009_Iceland_Ive, 11 Cystopteris_fragilis_7248_Swiss_Bern, 12 Cystopteris_fragilis_7625_Taiwan_Heping, 13 Cystopteris_montana_5839_NFLD_StBarbeN, 14 Cystopteris_moupinensis_4861_Taiwan_Nantou_3300m, 15 Cystopteris_protrusa_5838_Miss, 16 Cystopteris_tasmanica_6379_NZ_Otago, 17 Cystopteris_tenuis_6387_Vermont_Chittendon_100m, 18 Gymnocarpium_appalachianum_7639_Virg_Highland_1100m, 19 Gymnocarpium_appalachianum_7800_Virg_Page_1200m, 20 Gymnocarpium_disjunctum_4710_Alaska_Kenai, 21 Gymnocarpium_disjunctum_7751_Wash_Snohomish_500m, 22 Gymnocarpium_dryopteris_5837_Finland_VarsinaisSuomi, 23 Gymnocarpium_dryopteris_7981_Japan_Hokkaido_600m, 24 Gymnocarpium_dryopteris_8031_Ont_TB, 25 Gymnocarpium_jessoense_8120_Russia_Sakh_100m, 26 Gymnocarpium_jessoense_6979_Ont_TB, 27 Gymnocarpium_remotepinnatum_4862_Taiwan_Nantou_3300m, 28 Gymnocarpium_robertianum_7945_Norway_Fauske_100m; TREE bestREP1 = (1:0.00905689,((13:0.01092529,((15:0.01524974,(((6:1.0E-8,11:1.0E-8,7:0.0028271,(9:1.0E-8,5:1.0E-8):0.00476722):0.00368514,16:0.00675697):9.6846E-4,(10:1.0E-8,12:9.3202E-4,8:0.00289925,17:1.0E-8):0.00561826):0.00345103):0.01582257,(14:0.01000644,(3:0.00217315,4:1.0E-8):0.01489915):0.0047921):0.004957):0.01806475,((20:9.3435E-4,21:9.0522E-4,(22:1.0E-8,24:9.0478E-4):9.0494E-4,23:9.0266E-4):0.01047786,((27:0.00663823,(19:9.1381E-4,18:1.0E-8,(26:1.0E-8,25:9.1254E-4):0.00274275):0.00370752):0.00556898,28:0.01038186):0.00383287):0.07746467):0.02400294,2:0.01275107); END; BEGIN LABELS; CHARGROUPLABEL Set1; CHARGROUPLABEL Set2; CHARGROUPLABEL Set3; END; BEGIN SETS; CHARSET tRNAs = 1 - 2 967 - 1014 1165; CHARSET trnG_intron = 3 - 494 500 - 546 548 - 641 647 - 695 713 - 966; CHARSET trnGtrnR_spacer = 1015 - 1164; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1165; EXSET * UNTITLED = 495 - 499 547 642 - 646 696 - 712; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1165; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1165; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1402366676049; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6437438399826928652; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 52072825660679173; checksumv 0 2 1254564682 null getNumChars 1165 numChars 1165 getNumTaxa 28 numTaxa 28 short true bits 15 states 15 sumSquaresStatesOnly 657421.0 sumSquares 657421.0 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 807 710; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6437438399826928652 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6437438399826928652; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 707 643; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6437438399826928652 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 806.1402366438899.4869954658533195737; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 707 643; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((13:0.01092529,((15:0.01524974,(((6:1.0E-8,11:1.0E-8,7:0.0028271,(9:1.0E-8,5:1.0E-8):0.00476722):0.00368514,16:0.00675697):9.6846E-4,(10:1.0E-8,12:9.3202E-4,8:0.00289925,17:1.0E-8):0.00561826):0.00345103):0.01582257,(14:0.01000644,(3:0.00217315,4:1.0E-8):0.01489915):0.0047921):0.004957):0.01806475,(1:0.00905689,2:0.01275107):0.02400294):0.038732335,((20:9.3435E-4,21:9.0522E-4,(22:1.0E-8,24:9.0478E-4):9.0494E-4,23:9.0266E-4):0.01047786,((27:0.00663823,(19:9.1381E-4,18:1.0E-8,(26:1.0E-8,25:9.1254E-4):0.00274275):0.00370752):0.00556898,28:0.01038186):0.00383287):0.038732335);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #52072825660679173 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 707 643; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;