#NEXUS [written Mon Jul 07 22:47:56 IST 2014 by Mesquite version 2.75 (build 564) at VAIO/117.246.173.3] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=24; TAXLABELS Lecanicillium_psalliotae_IISR_EPF_02_India Lecanicillium_psalliotae_QNCSE0810_China Lecanicillium_psalliotae_XSD08038_China Lecanicillium_psalliotae_ARSEF2234 Lecanicillium_psalliotae_KYK_00031_Japan Lecanicillium_psalliotae_ARSEF2332_USA Lecanicillium_psalliotae_CBS_117544_Spain Lecanicillium_psalliotae_CBS_100172_USA Lecanicillium_saksenae_IMI_179841_India Lecanicillium_lecanii_IMI_255033_Sri_Lanka Lecanicillium_muscarium_IMI_268316_UK Lecanicillium_longisporum_IMI_021167_Sri_Lanka Lecanicillium_nodulosum_IMI_338014R_Mexico Lecanicillium_attenuatum_CBS_170.76_Poland Lecanicillium_dimorphum_CBS_363.86_China Lecanicillium_aphanocladii_CBS_376.77_Netherlands Lecanicillium_tenuipes_CBS_309.85_Spain Lecanicillium_aranearum_CBS_726.73_Ghana Lecanicillium_antillanum_CBS_350.85_Cuba Lecanicillium_fusisporum_CBS_164.70_Netherlands Lecanicillium_acerosum_CBS_418.81_Brazil Pochonia_chlamydosporia_Var_chlamydosporia_CBS_103.65_Germany Pochonia_chlamydosporia_Var_catenulatum_CBS_504.66 Verticillium_dahliae_MD_80_Germany ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "L.nexus"'; DIMENSIONS NCHAR=1266; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Lecanicillium_psalliotae_IISR_EPF_02_India -----------------------------------GACCAGCGGAGGGATCATTA-CAGAGTTTAC-AACTCCCAAACCCTTATGTGAAC--ATACCA-----AGATGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTA-GC---GCC-GCCCGCGGCCCGGACCC-AGGCGG-CCGCCGGAGA--CC-AC-CAAACTCTT--TTTGTAT-CATG--AGTATCTTTCTGAAATCCCGCCGCAAGGCCAAACC-AAATGAATCAAAACTTTTCAACAACGGGATCTCTTTGGTTTCTGGGATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCCTTGGGGAAATCGG-CGTTGGGGACCGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCCAC---TTTCTGAACG-TGACCTCGGATCAGG-----AGATCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_psalliotae_QNCSE0810_China -------------------------GGGGTTTGGTGACCAGCGGAGGGATCATTA-CAGAGTTTAC-AACTCCCAAACCCTTATGTGAAC--ATACCA-----AGATGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTA-GC---GCC-GCCCGCGGCCCGGACTC-AGGCGG-CCGCCGGAGA--CC-AC-CAAACTCT---TTTGTAT-CATG--AGTATC-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-CGTTGGGGACCGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCCAC---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCATAAAAGCGGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Lecanicillium_psalliotae_XSD08038_China GGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTA-CAGAGTTTTC-AACTCCCAAACCCTTATGTGAAC--ATACCA-----AGATGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTA-GC---GCC-GCCCGCAGCCCGGACTC-AGGCGG-CCGCCGGAGA--CC-AC-CAAACTCT---TTTGTAT-CATG--AGTATC-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-CGTTGGGGACCGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCCAC---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_psalliotae_ARSEF2234 --------------------------------------------------------CAGAGTTTAC-AACTCCCAAACCCTTATGTGAAC--ATACCA-----AGATGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTA-GC---GCC-GCCCGCGGCCCGGACTC-AGGCGG-CCGCCGGAGA--CC-AC-CAAACTCT---TTTGTAT-CATG--AGTATC-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-CGTTGGGGACCGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCCAC---TTTCTGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Lecanicillium_psalliotae_KYK_00031_Japan ----------------------------GTTGGTGAACCAGCGGAGGGATCATTA-TCGAGTTTAC-AACTCCCAAACCC-TATGTGAAC--ATACC------TACAGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTA-GC---GCC-GCCCGCGGCCCGGATCC-AGGCGG-CCGCCGGAGA--CC-AC-CAAACTC----TTTGTAT-TATC--AGTGTA-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCCTTGGGGAAGTCGG-CGTTGGGGACCGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACCCCCAAC---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAACAGCTCAAATTTGAAATCTGGCCTTCGGGTCCGAGTTGTAATTTGTAGAGGATGCTTTTGGCGAGGTGCCTTCCGAGTTCCCTGGAACGGGACGCCATAGAGGGTGAGAGCCCCGTCTGGTCGGATACCAAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTATATGTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGGGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCCTATGACCAGACTTGGGCCCGGTGAATCATCCAGCGTTCTCGCTGGTGCACTTTGCCGGGCACAGGCCAGCATCAGTTTGGCGCGGGGGATAAAGGCTTTGGGAATGTGGCTCCCTCGGGAGTGTTATAACCCATTGCGCAATACCCTGCGCCGGACTGAGGTACGCGCATCGCAAGGATGCTGGCGTAATGGTCATC Lecanicillium_psalliotae_ARSEF2332_USA --------------------------------------------------------CAGAGTTTAC-AACTCCCAAACCCTTATGTGAAC--ATACCA-----TAATGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTA-GC---GCC-GCCCGCGGCCCGGACCC-AGGCGG-CCGCCGGAGA--CCACC-AAAACTAT---TTTGTAT-CAGC--AGTTTT-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC-CCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-CGTTGGGGACTGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCCAC---TTTCTGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Lecanicillium_psalliotae_CBS_117544_Spain --------------------AAGGTCTCCGTTGGTGACCAGCGGAGGGATCATTA-TCGAGTTTAC--ACTCCCAAACCCTTATGTGAAC--ATACC------TACTGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTC-GC---GCC-GCCCGCGGCCCGGACCC-AGGCGG-CCGCCGGAGA--CC-CC-TAAACTC------TGTAT-TATC--AGCATT-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-CGTTGGGGAACGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAA---CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCAAC----TTCTGAACG-TGACCTCGGATCAGGTAGG-ATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_psalliotae_CBS_100172_USA ---------------------------------------------------ATTA-TCGAGTTTAC-AACTCCCAAACCC-TATGTGAAC--ATACC------TACAGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTA-GC---GCC-GCCCGCGGCCCGGATCC-AGGCGG-CCGCCGGAGA--CC-AC-CAAACTC----TTTGTAT-TATC--AGTGTA-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACCTC-CCCTTGGGGAAGTCGG-CGTTGGGGACCGGC-AGTATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACCCCCAAC---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_saksenae_IMI_179841_India ---------------------------------------------------ATTA-CAGAGTTTAC-AACTCCCAAACCCTTATGTGAAC--ATACCT-----ATATGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTA-GC---GCC-GCCCGCGGCCCGGACTC-AGGCGG-CCGCCGGAGA--CCTAC-CAAACTCT---TTTGTAT-CATG--AGTATC-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-CGTTGGGGACCGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCCAC---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_lecanii_IMI_255033_Sri_Lanka --------------------------------------------------------TCGAGTTTAC-AACTCCCAAACCCTTCTGTGAAC--ATACC------TACCGTTGCTTCGGCGGA--CTCG-CCCGGCGTCCGGA-CG-------------------------CGGACCC-AGGCGG-CCGCCGGAGA--CC-CC-CAAACTC------TGTAT-TATC--AGCATC-TTCTGAA--TTCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCC--CAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACCTC-CCCTCGGGGAAGTCGG-CGTTGGGGAACGGC-AGCACA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAA---CTCGCACCGGAA-ACCCGACGC-GCCAC-GCCGTAAAACACCCAAC----TTCTGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Lecanicillium_muscarium_IMI_268316_UK --------------------------------------------------------TCGAGTTTAC-AACTCCCAAACCCTTATGTGAAC--ATACC------TACTGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTC-GC---GCC-GCCCGCGGCCCGGACCC-AGGCGG-CCGCCGGAGA--CC-TC-TAAACTC------TGTAT-TATC--AGCATT-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATT--GCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-CGTTGGGGAACGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAA---CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCAA-----TTCTGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Lecanicillium_longisporum_IMI_021167_Sri_Lanka ---------------------------------------------------ATTA-TCGAGTTTAC-AACTCCCAAACCCTTCTGTGAAC--ATACC------TACTGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTC-GC---GCC-GCCCGCGGCCCGGACCC-AGGCGG-CCGCCGGAGA--CC-CC-CAAACTC------TGTAT-CATG--AGCATC-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTCTGGGGAAATCGG-CGTTGGGGAACGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAA---CTCGCACCGGAA-CCCCGACGCGGCCAC-GCCGTAAAACACCCAAC---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_nodulosum_IMI_338014R_Mexico --------------------------------------------------------CCGGATTTACTGAATCCCCAACCCTT-TGTGAAC--ATACC------TATCGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGG-CGGCCCT-GC---GCC-GCTCGCGACCCGGATCC-AGGCGG-CCGCCGGGGA--CC--C-TAAACTC------TGTATTCTTCGAACCATC-TTCTGAA--TCCGCCGCAAGG-CAACAC-AAATAAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCACCCCTCGACCCCGCGTTTAGCGGAGTCGG-CGTTGGGGGACGGC-ACTACC----------------------------------CC--GCCGCCCCCGAAACGAATCGGCGGCCCGTCCGCGGCGACAT---CTGCGTAGTAACT-CAG---CGCGCACCGGAACCCCCGACGCGGCCAC-GCCGTAAAACACCCAAC-----TCTGAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Lecanicillium_attenuatum_CBS_170.76_Poland ---------------------------------------------------ATTA-TCGAGTTTAC-AACTCCCAAACCCTTATGTGAAC--ATACC------TACTGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTC-GC---GCC-GCCCGCGGCCCGGACCC-AGGCGG-CCGCCGGAGA--CC-TC-TAAACTC------TGTAT-TATC--AGCATT-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-CGTTGGGGAACGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAA---CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCAAC----TTCTGAACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_dimorphum_CBS_363.86_China ---------------------------------------------------ATTA-CAGAGTTTAC-AACTCCCAAACCCTTATGTGAAC--ATACCA-----TAATGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTA-GC---GCC-GCCCGCGGCCCGGACCC-AGGCGG-CCGCCGGAGA--CCACC-AAAACTAT---TTTGTAT-CAGC--AGTTTT-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-CGTTGGGGACTGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCCAC---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_aphanocladii_CBS_376.77_Netherlands ---------------------------------------------------ATTA-CAGAGTTTAC-AACTCCCAAACCCTTATGTGAAC--ATACCA-----CGATGTTGCTTCGGCGGA--CTCGCCCCGGCGTCCGGA-CGGCCTA-GC---GCC-GCCCGCGGCCCGGATCC-AGGCGG-CCGCCGGAGA--CCACC-AAAACTAT---TTTGTAT-CAGC--AGTTTT-TTCTGAA--TCCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-CGTTGGGGACTGGC-AGCATA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATC-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCCAC---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_tenuipes_CBS_309.85_Spain ---------------------------------------------------ATTA-CCGAGTTTAC-AACTCCCAAACCCTTATGTGAAC--ATACC------TTTAGTTGCTTCGGCGGA--CTCGCCCCGGTGTCCGGA-CGGCCCTCGT---GCC-GGCCGCGACCCGGATCC-AGGCGG-ACGCCGGAGA--CCATCTCAAACTC----TTTGTATCCAAT--ACAGTC-TTCTGAA--TAAGCCGCAAGG-CAAAAC-AAATGAAT-AAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGAGCTC-CCTTTGGGGAGCCCGG-CGTTGGGG-TCGGC-AGC-TA----------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATT-TCAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCAAC---TTTCTGAACGTTGACCTCGAATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_aranearum_CBS_726.73_Ghana ---------------------------------------------------ATTA-CAGAGTTTTC-AACTCCCAAACCCAAATGTGAAC--ATACC------AATCGTTGCTTCGGCGGA--CCCGTCCCGGCGTCCGGA-CGGCCCT-ACGGGGCC-GCCCGCGGCCCGGACCC-AGGCGA-CCGCCGGGGG-CCCAACCCAAACTT----TTTGTAT-TCTG--AATCTC-TTCTGAA--TCCGCCGCAAGG-CAACAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGAGCTC-CCCTTGGGGAGCCCGG-CGTTGGGGATCGGC-AGCA------------------------------------CC--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGCAGTA----CAACCACTCGCTCTGGAA-CCCCGACGCGGCCAC-GCCGTAAAACACCCAAC---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_antillanum_CBS_350.85_Cuba ---------------------------------------------------ATTA-CCGAGTTTAC-AACTCCCAAACCCAAATGTGAAC--ATACCA-----AACTGTTGCTTCGGCGGA--CTCGCCCCAGCGTCCGGACCGGCCTC-GC---GCCGGCCCGCGGCCTGGATCC-AGGCGG-CCGCCGGGGAAAACCAA-AAAACTC----TTTGTATCTTTG--TATATC-TTCTGAG--CACGCCGCAAGGCAAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGCAGCATTCTGCCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGAGCTC-CCTTTGGGGAGCACGG-TGTTGGGGACCGGC-AGCACA----------------------------------CTGAGCCGACCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAATCATCAC--CTCGCACCGGGA-ACCCGACGTGGCCAC-GCCTTGAAACAACCCAA---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_fusisporum_CBS_164.70_Netherlands ---------------------------------------------------ATTA-CAGAGTTTAC-AACTCCCAAACCC-TATGTGAAC--ATACC------TATTGTTGCTTCGGCGGA--CCCGCCCCGGCGTCCGGA-CGACCTA-GC---GTC-GCCCGCGGCCCGGGCTC-AGGCGG-CCGCCGGAGA--CC-AC-CAAACTC----TTTGTAT-TATG--AGAATC-TTCTGAA--TTCGCCGCAAGG-CAAAAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGCATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCTTTGGGGAAATCGG-TGTTGGGGATCGGC-AGCAC-----------------------------------TA--GCCGGCCCCGAAATGGAGTGGCGGCCCGTCCGCGGCGACCT---CTGCGTAGTAACT-CAAC--CTCGCACCGGAA-CCCCGACGTGGCCAC-GCCGTAAAACACCCAAC---TTTCTGAACGTTGACCTCGGATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lecanicillium_acerosum_CBS_418.81_Brazil ----------------------------------------------GGATCATTACCAGAGTTTAC-AACTCCCACACCC-CCTGTGAAC--ATACC------TACCGTTGCTTCGGCGTG--CTCGCCCCGGCGTCCGGC-TGGCCCT-GT---GCT-GGCCGCGGCCCGGAACCAAGGTGG-CCGCCGGGGAAACC--C-AAAACTG----TCAGTAT-TATC--AGCTTT-TTCTGAA--TCCGCCGCAAGG-CAACAC-AAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGGAGCATTCTCCCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCGACTTC-CCCTTGGGGAGGTCGGTCGTTGGAGATCGGC-ACCA------------------------------------CT--GCCGGCTCCCAAATTCAGTGGCGACCCG-CCGTGGCGACCT---CTGCGTAGTAGCT-AACA--CTCGCACCGGGA-ACCAGACGT-GTCAC-GCCGTAAAACCCCCGAC---TTTCTGAAGCGTGACCTCGAATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pochonia_chlamydosporia_Var_chlamydosporia_CBS_103.65_Germany ---------------------------------------------------ATTA-CCGAGTTTTC-AACTCCCAAACCC-CATGTGAACTTATACCATTTACAACCGTTGCTTCGGCGGGTTCTCGCCCCGG-----------GCTTT-AC---ACC----------CCGGAACC-AGGCGGCCCGCCGGGGGACC-----CAAACTCTAGATTTTTAT--TTT--AGCAT--GTCTGAG---------TGGAATCATTACAAAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCC-C-----AGCGGTTTGG-TGTTGGGGACCGGCGAGTACAGAGGCTTTGGGGACTTGTCCCCCTTCCCTCG---GC--GCCGCCCCCGAAATGAATTGGCGGTCTCGTCGCGGCCTCCT---CTGCGTAGTAGCA-CAAC--CTCGCATCAGGA-GCGCGGCGCGGCCACTGCCGTAAAACGCCCAACTTTTTTTTAAGAGTTGACCTCGAATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pochonia_chlamydosporia_Var_catenulatum_CBS_504.66 ---------------------------------------------------ATTA-CCGAGTTTTC-AACTCCCAAACCC-CATGTGAACTTATACC------ATTTTTTGCTTCGGCGGGTTCTCGCCCCGG-----------GTTTT-AC---ACC----------CCGGAACC-AGGCGGCCCGCCGGGGG-ACT----CAAACTCTAGATTTTTA--CTTT--AGCAT--GTCTGAG---------TGGAATCATTACAAAATGAATCAAAAC-TTTCAACAAC-GGATCTCTT--GGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCCC-C-----AGTGGTTTGG-TGTTGGGGACCGGCGAGTACAGAGGCGGATGGGGACTTGTGCCCCTTCTTCCTCGGC--GCCGCCCCCGAAATGAATTGGCGGTCTCGTCGCGGCCTCCT---CTGCGTAGTAGCA-CAAC--CTCGCATCAGGA-GCGCGGCGCGGCCACTGCCGTAAAACGCCCACC--TTTTTTAAGAGTTGACCTCGAATCAGGTAGGAATACCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Verticillium_dahliae_MD_80_Germany --------------------------------------------------------CCGAGTATCT--ACTCATAA--CCCTTTGTGAAC------CA-----TATTGTTGCTTCGGCGG---CTCGTTCTGC-----------------GA---GC---------------------------CCGCCGG-----TCCAT-CAGTCTCTCTGTTTATAC-CAAC--GATAC--TTCTGAGTGTTCTTAG------CGAACT-------ATTAAAAC-TTTTAACAAC-GGATCTCTT--GGCTCTAGCATCGATGAAGAACGCAGCGAAACGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATGGCGCCTTCCAGTATCCTGGGAGGCATGCCTGTCCGAGCGTCGTTTCAACCCTCGAGCCC-C-----AGTGGCCCGG-TGTTGGGGATCTAC--GT-------------------------------------CT--GTAGGCCCTTAAAAGCAGTGGCGGAC---CCGCGTGGCCCTTCATTGCGTAGTAGTT-ACAG--CTCGCATCGGAG-TCCCGCAGGCGCTT--GCCTCTAAACCCCCTAC---------------AAGCCCGCCTCGTGCGGCAACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN TREES; Title Trees; LINK Taxa = Taxa; TRANSLATE 1 Lecanicillium_psalliotae_IISR_EPF_02_India, 2 Lecanicillium_psalliotae_QNCSE0810_China, 3 Lecanicillium_psalliotae_XSD08038_China, 4 Lecanicillium_psalliotae_ARSEF2234, 5 Lecanicillium_psalliotae_KYK_00031_Japan, 6 Lecanicillium_psalliotae_ARSEF2332_USA, 7 Lecanicillium_psalliotae_CBS_117544_Spain, 8 Lecanicillium_psalliotae_CBS_100172_USA, 9 Lecanicillium_saksenae_IMI_179841_India, 10 Lecanicillium_lecanii_IMI_255033_Sri_Lanka, 11 Lecanicillium_muscarium_IMI_268316_UK, 12 Lecanicillium_longisporum_IMI_021167_Sri_Lanka, 13 Lecanicillium_nodulosum_IMI_338014R_Mexico, 14 Lecanicillium_attenuatum_CBS_170.76_Poland, 15 Lecanicillium_dimorphum_CBS_363.86_China, 16 Lecanicillium_aphanocladii_CBS_376.77_Netherlands, 17 Lecanicillium_tenuipes_CBS_309.85_Spain, 18 Lecanicillium_aranearum_CBS_726.73_Ghana, 19 Lecanicillium_antillanum_CBS_350.85_Cuba, 20 Lecanicillium_fusisporum_CBS_164.70_Netherlands, 21 Lecanicillium_acerosum_CBS_418.81_Brazil, 22 Pochonia_chlamydosporia_Var_chlamydosporia_CBS_103.65_Germany, 23 Pochonia_chlamydosporia_Var_catenulatum_CBS_504.66, 24 Verticillium_dahliae_MD_80_Germany; TREE Lecanicillium_psalliotate_ITS_tree = ((22,(23,24)),((19,(20,21)),(((13,(14,15)),(16,(17,18))),(((1,(2,3)),(4,(5,6))),((7,(8,9)),(10,(11,12))))))); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1266; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1266; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1266; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1404753476533; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3958125344994748949; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7402894007682942112; mqVersion 275; checksumv 0 3 3650431557 null getNumChars 1266 numChars 1266 getNumTaxa 24 numTaxa 24 short true bits 15 states 15 sumSquaresStatesOnly 250468.0 sumSquares 250468.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 649; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3958125344994748949 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3958125344994748949; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 582; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 582; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3958125344994748949 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 884.1404752470814.5269285802057763003; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 582; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; getInfoPanel; tell It; btspOpen true; apOpen false; endTell; toggleInfoPanel on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7402894007682942112 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 582; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;