#NEXUS [written Wed Nov 15 00:07:17 SGT 2017 by Mesquite version 3.3 (build 854) at 177-239.priv23.nus.edu.sg/172.23.177.239] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=30; TAXLABELS Hexopetion_alatum_A Bactris_gasipaes_AE Astrocaryum_sect_Huicungo_B Astrocaryum_sect_Huicungo_C Astrocaryum_sect_Huicungo_D Astrocaryum_carnosum_E Astrocaryum_chambira_G Astrocaryum_chambira_H Astrocaryum_chonta_I Astrocaryum_chonta_J Astrocaryum_chonta_K Astrocaryum_ciliatum_L Astrocaryum_faranae_M Astrocaryum_gratum_N Astrocaryum_gynacanthum_O Astrocaryum_gynacanthum_P Astrocaryum_gyncanthum_Q Astrocaryum_huicungo_R Astrocaryum_huicungo_S Astrocaryum_javarense_T Hexopetion_mexicanum_V Astrocaryum_murumuru_X Astrocaryum_murumuru_Y Astrocaryum_perangustatum_Z Astrocaryum_perangustatum_AA Astrocaryum_sciophilum_AB Astrocaryum_sciophilum_AC Astrocaryum_sciophilum_AD Astrocaryum_vulgare_AH Astrocaryum_vulgare_AI ; END; BEGIN CHARACTERS; TITLE 'Palm Phosphoribulokinase (PRK) haplotypes'; DIMENSIONS NCHAR=682; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Hexopetion_alatum_A --------GGCACAGTCTAGAAAGCATCAAAGCGAGCATCGAAGCTCGAAAGCTTGACTTTGATCGTTATGTTGGTATGTCACTTTGCCAAAGCGCCTAGTCATTAGTACTTGAAGAATTGGCAAAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATTGTAACCTACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACCAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGACTAAAAATATAATATTACTTCATGTGCAATT-TT-TTTT-GGTACCTT-TTTCTAAAAGAAAGAGGGAGAGGGGGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCAGTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCTCTACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAAGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTACCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Bactris_gasipaes_AE -----------ACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTTATCGAAGTTTTACCAACACAATTAATTCCTGATCATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTACTTTAATCCAGTTTTCCTCTTCGACGAAGG-------------------------------------- Astrocaryum_sect_Huicungo_B ---------GCACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGGTATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTTATCGAAGTTTTACCAACACAATTAATTCCTGATCATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_sect_Huicungo_C ----------------------------------------------------CTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCCGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_sect_Huicungo_D ------TGGGCACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGGTATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTGATCATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTA-------------------------------------------------------------------- Astrocaryum_carnosum_E ------------CAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGT-A--TACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCCGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTGAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCACTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACT-- Astrocaryum_chambira_G ----------CACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTACGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCATGTGCAATTTTTTTTTTTGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGCGCCGAACCCCATCTGATTCATTGAGACAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_chambira_H --------GGCACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTACGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCATGTGCAATTTTTTTTTTTGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGCGCCGAACCCCATCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_chonta_I ------------------------------------------------------------------------------GTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATGCTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCCTTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---A----------------------------------------------------------------------------------------------------------------------------- Astrocaryum_chonta_J ------------------------------------------------------------------------------------------------------GTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAAAATAGTAACATACTTCAGTATTTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATTTGATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCAC-------------------------------- Astrocaryum_chonta_K ------------------------------AGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATGGTAACATGCTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGAC-C-ACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_ciliatum_L ----------CACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTTACTTTGCCAAAGCGCCTAGTCGTTAGTACTTGAAGAATTGGCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATGTAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGTGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGAC-C-ACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTACCTCTTCGATGAAGGCTCCACCGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_faranae_M ---------------------AAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGACTATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGGTATCAGAC-C-ACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTTATCGAAGTTTTACCAACACAATTAATTCCTGATCATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTA- Astrocaryum_gratum_N -----GTGGGCACAGTCTCCAAAGCATCAAAGCGAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAACAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_gynacanthum_O -------------------------------------ATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTTACTTTGCCAAAGCGCCTAGTCGTTAGTACTTGAAGAATTGGCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATGTAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCAGGTGCAATT-TTTTTTT-GGTACCTT-TTCCTAAAAGAAAGAGGGAGAGGGGGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATTCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAGCGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTACC--------------------------------------------------- Astrocaryum_gynacanthum_P -----GTGGGCACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTTACTTTGCCAAAGCGCCTAGTCGTTAGTACTTGAAGAATTGGCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATGTAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCAGGTGCAATT-TTTTTTT-GGTACCTT-TTCCTAAAAGAAAGAGGGAGAGGGGGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATTCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTACCTCTTCGATGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_gyncanthum_Q --------GGCACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTTACTTTGCCAAAGCGCCTAGTCGTTAGTACTTGAAGAATTGGCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGYGTTGATTGCTGAATGTAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCATAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCAGGTGCAATT-TTTTTTT-GGTACCTT-TTCCTAAAAGAAAGAGGGAGAGGGGGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATTCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTACCTCTTCGATGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_huicungo_R --------------------------------------------------AGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAGAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGAC-C-ACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Astrocaryum_huicungo_S ------------CAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATGCTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAACAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGT-------------------------------------------------------- Astrocaryum_javarense_T -----------ACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAAGGGGAAGAACCCCACCTGACTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGAC-C-ACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACT-- Hexopetion_mexicanum_V -----------ACAGTCTCGAAAGCATCAAAGCGAGCATCGAAGCTCGAAAGCTTGACTTTGATCGTTATGTTGGTATGTCACTTTGCCAAAGCGCCTAGTCATTAGTACTTGAAGAATTGGCAAAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATTGTAACCTACTTCAGTATCTAGCAAATGCTTCCGCAAAAAACCAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGACTAAAAATATAATATTACTTCATGTGCAATT-TT-TTTT-GGTACCTT-TTTCTAAAAGAAAGAGGGAGAGGGGGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCAGTGTTTCTTTAGCACTCTTGGATTGCTGGCAGCTTATGCATTGCTCTACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAAGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTACCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTA- Astrocaryum_murumuru_X ------------CAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCCGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACGCAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTG------------ Astrocaryum_murumuru_Y ------------CAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTACCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGCCGAACCCCACCTGATTTATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACGCAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGT-------------------------------------------------------- Astrocaryum_perangustatum_Z ---------GCACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTCATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATG---C-G-AA--------------T--C------T--GATCAATAAGTCAAATAATGCACAAAACCTACCGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTCTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGAAGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAGGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGA--------- Astrocaryum_perangustatum_AA --------GGCACAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGCGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_sciophilum_AB ------------CAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTTATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATATGTTGATATAACATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTTGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGCCGAACCCCACCTGATTTATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACGCAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACT-- Astrocaryum_sciophilum_AC ---------------------------------------------------GCTTGACTTTTATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATATGTTGATATAACATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTTTGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGGGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACGCAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACT-- Astrocaryum_sciophilum_AD -----------------------GCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTTACTTTGCCAAAGCGCCTAGTCGTTAGTACTTGAAGAATTGGCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATGTAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCATAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGTCAAATAATGCACAAAACCTACTGGGCTAAAAATATAATATTACTTCATGTGCAATT-TTTTTTT-GGTACCTT-TTTCTAAAAGAAAGAGGGAGAGGGGGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATTCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTACCTCTTCGATGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_vulgare_AH -------------AGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGGCAAATAATGCACAAAACCTACTGGGCTAAAAATGTAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGCGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTGAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA Astrocaryum_vulgare_AI ------------CAGTCTCCAAAGCATCAAAGCTAGCATCGAAGCTCGAAAGCTTGACTTTGATGGTTATGTTGGTATGTCACTTTGCCAAAGCGCCCAGTCGTTAGTACTTGAAGAATTGTCAGAGCAATAATTTGTTGATATAATATAGAGCAATGTCATTAGTGTTGATTGCTGAATATAGTAACATACTTCAGTATCTAGCAAATGCTTCAGCAAAAAACTAACCTAACTAGCAAAGAATCTGATCAATAAGGCAAATAATGCACAAAACCTACTGGGCTAAAAATGTAATATTACTTCATGTGCAATT-TTTTTTTGGGTACCTT-TTTCTAAAAGAGAGAGGGAGAGGGCGCCGAACCCCACCTGATTCATTGAGATAATGAGACAATTAGATATGCTGAGTCTCATGTTCTTCAGATATCAGACTCCACTGTTTCTTTAGCACTCTTGGATTGCTGACAGCTTATGCATTGCT--ACCCTTGGCAGACCCACAGAAGCAATATGCTGATGCTGTAATCGAAGTTTTACCAACACAATTAATTCCTG---ATGACAACGAAAGGAAGGTGCTGAGAGTTCGCTTGGTGATGAAAGAAGGGGTGAAGTACTTTAATCCAGTTTTCCTCTTCGACGAAGGCTCCACTGTTTCATGGATACCCTGTGGGAGGAAACTAA ; END; BEGIN TREES; Title 'Palm Phosphoribulokinase (PRK) haplotypes'; ID 015fbb480b644; LINK Taxa = Taxa; TRANSLATE [0] 1 Hexopetion_alatum_A, [1] 2 Bactris_gasipaes_AE, [2] 3 Astrocaryum_sect_Huicungo_B, [3] 4 Astrocaryum_sect_Huicungo_C, [4] 5 Astrocaryum_sect_Huicungo_D, [5] 6 Astrocaryum_carnosum_E, [6] 7 Astrocaryum_chambira_G, [7] 8 Astrocaryum_chambira_H, [8] 9 Astrocaryum_chonta_I, [9] 10 Astrocaryum_chonta_J, [10] 11 Astrocaryum_chonta_K, [11] 12 Astrocaryum_ciliatum_L, [12] 13 Astrocaryum_faranae_M, [13] 14 Astrocaryum_gratum_N, [14] 15 Astrocaryum_gynacanthum_O, [15] 16 Astrocaryum_gynacanthum_P, [16] 17 Astrocaryum_gyncanthum_Q, [17] 18 Astrocaryum_huicungo_R, [18] 19 Astrocaryum_huicungo_S, [19] 20 Astrocaryum_javarense_T, [20] 21 Hexopetion_mexicanum_V, [21] 22 Astrocaryum_murumuru_X, [22] 23 Astrocaryum_murumuru_Y, [23] 24 Astrocaryum_perangustatum_Z, [24] 25 Astrocaryum_perangustatum_AA, [25] 26 Astrocaryum_sciophilum_AB, [26] 27 Astrocaryum_sciophilum_AC, [27] 28 Astrocaryum_sciophilum_AD, [28] 29 Astrocaryum_vulgare_AH, [29] 30 Astrocaryum_vulgare_AI; TREE BEAST_PRK_haplotypes = (2:36.118454699760036,(((21:3.5841592186860822,1:3.5841592186860822):16.95423341982315,(28:6.6029072303666965,((16:1.2205743616919733,15:1.2205743616919733):1.4881259282615709,17:2.708700289953544):3.8942069404131523):13.935485408142537):12.49501359489798,((((30:1.9437879900407147,29:1.9437879900407147):6.252208895536992,(8:1.7315284499026546,7:1.7315284499026546):6.464468435675052):3.1475264762545923,(((6:3.325736596529886,(4:2.048957822759398,22:2.048957822759398):1.2767787737704879):2.938006599560257,(((9:1.968880451278416,11:1.968880451278416):0.9231995365400181,19:2.892079987818434):2.5591016973833476,(((24:3.1212147356269355,10:3.1212147356269355):1.0129835589979876,(5:2.335622004938429,(13:0.923351662049857,3:0.923351662049857):1.4122703428885721):1.798576289686494):0.7551872953707672,((14:2.680826906462208,18:2.680826906462208):0.8339237366178374,20:3.5147506430800455):1.374634946915645):0.5617960952060912):0.8125615108883615):1.9236740091077031,((25:5.500926517785064,23:5.500926517785064):1.5125052458119832,12:7.013431763597048):1.1739854416007987):3.1561061566344524):3.389155422372026,(27:1.8616428015952735,26:1.8616428015952735):12.871035982609051):18.30072744920289):3.0850484663528235); TREE RAxML_PRK_haplotypes = (2:0.0042395,(((26:0.001584,27:0.000001):0.008094,((1:0.001631,21:0.003229):0.019344,(28:0.000001,(17:0.000001,(15:0.001804,16:0.000001):0.001593):0.003191):0.008273):0.006442):0.000001,((7:0.001572,8:0.000001):0.004752,((29:0.001582,30:0.000001):0.003167,(25:0.000001,(12:0.013108,(23:0.006945,(22:0.001596,((4:0.000001,6:0.003199):0.000001,((10:0.006,24:0.003356):0.000001,((5:0.000001,(3:0.000001,13:0.001617):0.001575):0.001564,((14:0.00315,18:0.002315):0.000001,(20:0.003193,(11:0.00164,(9:0.002182,19:0.003447):0.000001):0.001586):0.000001):0.000001):0.000001):0.003137):0.001586):0.004785):0.000001):0.001587):0.000001):0.000001):0.001568):0.0042395)[% ] [% ] [% setBetweenBits = selected ]; END;