#NEXUS [written Sat Apr 25 20:53:29 EDT 2015 by Mesquite version 2.75 (build 566) at Macintosh-99.local/10.0.1.3] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=72; TAXLABELS Adiantum_aleuticum_WCLG Adiantum_raddianum_BMJR Alsophila_spinulosa_GANB Anemia_tomentosa_CQPW Aquilegia_coerula_Aquca_00545.1 Arabidopsis_thaliana_AT5G17840_gDNA Argyrochosma_nivea_XDDT Asplenium_nidus_PSKY Asplenium_platyneuron_KJZG Athyrium_filixfemina_URCP Athyrium_sp_AFPO Azolla_caroliniana_cf_CVEG Blechnum_spicant_VITX Botrypus_virginianus_BEGM Cedrus_libani_GGEA Cryptogramma_acrostichoides_WQML Culcita_macrocarpa_PNZO Cystopteris_fragilis_LHLE Cystopteris_protrusa_YOWV Cystopteris_reevesiana_RICC Cystopteris_sp_XXHP Cystopteris_utahensis_HNDZ Davallia_fejeensis_OQWW Dennstaedtia_davallioides_MTGC Deparia_lobatocrenata_FCHS Didymochlaena_truncatula_RFRB Diplazium_wichurae_UFJN Dipteris_conjugata_MEKP Encephalartos_barteri_GNQG Equisetum_diffusum_CAPN Equisetum_hyemale_JVSZ Gaga_arizonica_DCDT Gymnocarpium_dryopteris_HEGQ Homalosorus_pycnocarpos_OCZL Hymenophyllum_bivalve_QIAD Hymenophyllum_cupressiforme_TRPJ Illicium_parviflorum_ROAP Leucostegia_immersa_WGTU Lindsaea_linearis_NOKI Lindsaea_microphylla_YIXP Lygodium_japonicum_PBUU Myriopteris_rufa_GSXD Nephrolepis_exaltata_NWWI Notholaena_montieliae_YCKE Onoclea_sensibilis_HTFH Ophioglossum_petiolatum_WTJG Ophioglossum_sp_QHVS Osmunda_javanica_VIBO Parahemionitis_cordata_ZXJO Peperomia_fraseri_XSZI Phlebodium_pseudoaureum_ZQYU Phymatosorus_grossus_ORJE Pilularia_globulifera_KIIX Pityrogramma_trifoliata_UJTT Plagiogyria_japonica_UWOD Pleopeltis_polypodioides_UJWU Polypodium_amorphum_YLJA Polypodium_glycyrrhiza_CJNT Polypodium_hesperium_B_IXLH Polypodium_hesperium_GYFU Psilotum_nudum_QVMR Pteridium_aquilinum_Contig12715_13944 Pteris_ensiformis_FLTD Pteris_vittata_POPJ Sceptridium_dissectum_EEAQ Thelypteris_acuminata_MROH Thyrsopteris_elegans_EWXK Tmesipteris_parva_ALVQ Vittaria_lineata_SKYV Woodsia_ilvensis_YQEC Woodsia_scopulina_YJJY Zea_mays_GRMZM2G038801_T01 ; END; BEGIN CHARACTERS; TITLE Hsp40; DIMENSIONS NCHAR=720; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Adiantum_aleuticum_WCLG ---------------------------------------------------------------------------------------------------------ATGTTGTTTGCTAGTTGGGATGAGCGGTTCGCCACAGGCATGAGTTCCCTTGGTAGCTCCATGGCTGTCGGCCACTCGGAT---------------------------------------------CTGTCTGCTGCTTGGGGTTCCATGCTCTTGTCTCATCGTCGGCTGGGGAAAATGCCT------ATCAACTCCTGCGCC------------------------------AATGGATCTCCTCACACAAAC---TCTTTGTCAAATGAACGTTATCTTGAAAGGGACTCAAAGCGTACC------------ATCAACAAATTAGAGTCTTTGCTGTATCCAGACAAGGTTGTT------GCAGAAGAAAAAATTGAGAGGCCAGTGGGTTTA---CCAATGAAGGGGCGTGCAATACTAAACAATCCTAGGTGTAATGAATGTGAGACCAAAGGACTCGTGGTGTGTGCAACATGCACAGGCTCAGGGCTATACATTGATTCGATTATGGAATGTCAAGGCATTTATGTGAAAGTGAGATGCTTAGGATGTGGTGGATCTGGAAGTATATTATGCTCAACTTGCGGAGGCCGGGGTCACTTA------TAA Adiantum_raddianum_BMJR ------------------------------------------------------------------------------------------------------------------------------------------ATGACTTCCCTTAGTAGTTTCACGGCCGTTGCCATTGGATACTCCGAT---------------------------------------------CTGTCTACTGCTCAGGGTTCTGTGCGCTTGTCTCATCGTTCCCTCGGAAAAATGTCT------ATCAACTTCTGCATC------------------------------AATGGAGCTCCTCACACGAAC---TCTTCGTCAAGTAAACATTTTCTTGAAAGGGATTCAAAGTGTTCC------------GTCAACAAATTAGAGTCTTTGCTATATCCAGACAAGGTGGTT------GCAGAAGAAAAAATTGAGAGGCCAGTGGGTTTA---CCAACGAAGGGGCGTGCAATACTAAACAATCCTAGGTGTAATGAATGTGAGACCAAAGGACTCGTGGTGTGTGCAACATGCACTGGCTCAGGGCTATATATTGATTCGACCATGGAATGCCAAGGCATCTATGTGAAAGTGAGATGCTTAGGATGTGGTGGATCTGGAAGTATATTATGCACAACTTGTGGAGGCCGAGGCCACTTA------TAG Alsophila_spinulosa_GANB ---------------------------------------------------------------------------------------------------------------------ACACAGAATCAACGTTTTCCTGTTGCAGCCAAGCTGCACGCACGCATGGCAGTCCTTGGTGGGTGCGTCGCCCCTCCGATCAACGGCTCT---------------------GATCTCTTTGTTGGGCGTCCCACGCTCTCTTCACAACATCGC---CCATCAACGTTTTCA------GTCATGTGCTGCACC------------------------------AATGGCGCCTTTCCAAGAAAT---TCCCTGGTCAATGATAATCGTCCCAGTAAGAACCCAAATAGCACT------------TTTGACAAACTAGAATCACTACTTTATCCTGGCAATGCTGTT------GCAGTAGAGAAGATTGAGACCCCTCTAGGTTTA---CCGAAGATGGGGCGTATAATTCTGAACAAACCCAGGTGTAGTGACTGTGAAACCAAAGGACTCGTTGTGTGTGCAACGTGCACCGGTTCAGGGTTGTACATTGACTCAATAATGGAAAGCCAAGGCATCATTGTGAAAGTGAGATGTCTAGGATGTGGTGGTTCTGGAAATGTTTTGTGCTCTGCTTGTGGAGGTAGGGGCCATCTC------TGA Anemia_tomentosa_CQPW ------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAGCGCTTCCAGCAGCTAGGTTGGCCTGTCCA---------------------------------------------GGCCTGCTTCCTTCTACTTCACCGAAGAACCGCCCTTCCTTCTCGACCACGCTTGCC---------------TGCACT------------------------------TCTGGCGCTTCGCCAGGAATC------------------------------------------------------------------------------------------------------------TCCCTGGAAAAGATTGAGTCACCTACTGGAGTT---CCTGGGTTGGGGCCAATGGTTCATGGCAAACCTGTGTGCGGTCAATGTGAAACTAAAGGACTTGTGCTGTGTGCCACTTGCTCGGGTTCTGGTCTCTATGTTGATTCAATACTTGAGAGTCAAGGCATCATTGTCAAAGTTCGGTGCTTAGGTTGTGGTGGCTCTGGAAGTATTTTGTGCTCCAGCTGTGGAGGTAGAGGTCATATA------TAG Aquilegia_coerula_Aquca_00545.1 ---------------------------------------------------------------------------------------ATGGAGAGTATTAGTATTGTTAATTTCTGTTCGACA---------------TCATTTCCCATTGCTTTCAAATCTTCAATTGATCATCATCACAAACCAAGGTTTCAG------TTC---------------------AATGGAGGAGGAACAAGACAA------------CCCATTTCCAATAGAAAAACTCTTACAATTTCCAATCGGGCGAGAGCAGTTTCATTAAGCACAAGGGGT------CCTAGG---------------------------------------------------------------------------------------------ACCTCCTCATTTTGTTATGACAAACCTATC------CCAGAGGAGATAATTGAGGAACCAGTTACTTTG---------TTGGAAAAAAGTATAGGAAACAATCCTCGCTGCAGCAGTTGTGAAGCCAAAGGTGCAGTTCCATGTGCCACATGCTCTGGTTCTGGATTATATGTTGACTCTATAATGGAGAGCCAGGGGATCATTGTCAAAGTTCGATGCCTAGGTTGTGGTGGATCTGGAAGCATCATGTGTTCACACTGTGGAGGTTGGGGTCATACT------TAA Arabidopsis_thaliana_AT5G17840_gDNA ---------------------------------------------------------------------------------------ATGAATTCCGCTTTAGATTTTGCTTTTCCGGCTACATTTCCGGTTAAA---TCGAGTTCTGTTGGCGGACATCGGATTGCTTCCCCTGGATTCAGTTCCCGCTTAAGA------TTG------TGCTCT---------------------------------------------------CTTCCTCCTTCTTCATCTATCAAGGCTGAGTCATGTTTAAAAAGAGACGTGCACAGGCAAAGAAGCAGTCTT---------------------------------------------------------------------------------------------GAGTCAATGTTCTGTTATGATAAACCAATA------CCAGAGGAAATAATCGAGGAGCCAGTTGGATTA---TCCATGTCAGAGAGAGAGATTGGTGATAATCAGCGTTGCACTTGTTGTGAAGCTAAAGGTGCATTGCTTTGTTCCACTTGTTCTGGAACTGGTCTATATGTAGATTCCATTATGGAGAGTCAAGGCATCATTGTTAAAGTCCGTTGCTTAGGTTGTGGTGGAAGTGGTAATATTATGTGCAAACTTTGTGGTGGGCGTGGTCACGTAGGACACTGA Argyrochosma_nivea_XDDT ------------------------------------------------------------------------------------------------------------------------------------------ATGACGTCCCTTGGCTGCTCCATGGCCGTTGCAATCGGCAGCTCTGAT---------------------------------------------------------CTGTCTGGGATGCTCTCGTCTCGTCATCGCCTGCTGAAAATTTCA------ACCAATTCCTGTGCC------------------------------AATGGAGCTCCTCACTCAAAC---TATGTGTCAAATGAGCACTGTCACTCAAAGCGTACC---------------------ATCAACAAACTGGAGTCTCTGCTCTATCCAGACAAGGTTGTT------GCAAAAGAGAAAATTGAGAGCCCAGTGGGTTTA---CCAACGAAGGGGCGTGCAATATTAAACAATCCTAGGTGTAATGAATGTGAGACCAAAGGACTGGTGGTGTGTGCGACATGCACAGGCTCAGGGCTATACATCGATTCAATCTTGGAATGTCAAGGCATAATCGTGAAAGTGAGATGCTTAGGATGTGGTGGATCTGGAAGTATATTATGCTCTACTTGTGGAGGTCGCGGTCACTTA------TAG Asplenium_nidus_PSKY ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTACTCTAATGGTAGCCCTTGGAGGTTCTACATCC------------------------------------------ATTTTGTTCAGCGGCCGTATGCTGTCATCTCAAAAGCGCTCATCAGGTCTCTCCAGC---------------TGCATC------------------------------AATGGAGCTCTTCCCACGGAC---CCTTTGGCAAACGGAGATTCTTCTGGGACGAACCGCAAGAGTACT------------ATCAACAAGCTGGAGTCCTTGCTCTATCCAGACAAAGTTGTG------GCGGAAGAGAAGATCGAGAGACCAGTAGGATTA---CCAGCCGCGGGGCGTGCGATATGGAACAAGCCCAAGTGTAATGACTGCGAAACCAGAGGGCTGGTGGTCTGCACAACATGCGCTGGCTCGGGACTGTACATCGACTCAATTATGGAATCTCAAGGCATAATTGTGAAAGTGAGATGCCTTGGATGTGGTGGGTCAGGAAATATTTTATGCGCTACTTGTGGAGGTCGGGGCCATGTT------TGA Asplenium_platyneuron_KJZG ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTACACAAATGGTAGCCCTTGGAGGTTCTACATCC------------------------------------------ATTTTGTTCAGCGGCCGTAAGCTTTCATCCCAACAACGC---TCATCAAGACTCTCC------ATCAAGAGCTGCATC------------------------------AATGGGACTCTTCCCACAGAT---CCTTCGGCTAATGGAGATTTCTCTGGGAAGAATCGAAAGAGTACT------------ATCAACAAGCTGGAGTCCTTGCTCTATCCGGACAAAGTTGTG------GCAGAAGAGAAGATAGAGAGACAGGTAGGTCTA---CCAGCCGTGGGGCGTGCAATATTGAACAAACCTAAGTGTAATGACTGCGAAACCAAAGGGTTGGTGGTCTGCACAACATGCACTGGCTCGGGACTGTACATCGACTCAATTATGGAATCTCAAGGCATAATAGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCACTACTTGTGGAGGTCGGGGTCATCTT------TGA Athyrium_filixfemina_URCP ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCCTAGGAGGTTCCACAGCC------------------------------------------GTTTTGTTCAGCGGCTCCAAGCTTTCATCTCAACATCGC---TCATCATCGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGCGAT---CCTTTGGCCAATGAAAATTGTCCCGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTTGAGTCCTTGCTTTTTCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGCAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Athyrium_sp_AFPO ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTAGCCCTAGGAGGTTCCACAGCC------------------------------------------GTTTTGTTCAGCGGCTCCAAGCTTTCATCTCAACATCGC---TCATCATCGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGCGAT---CCTTCGGCCAATGAAAATTGTCCCGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTTGAGTCCTTGCTTTTTCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTATGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Azolla_caroliniana_cf_CVEG ---------------------------------------------------------------------------------------------------------------------------------------------ATTGCCTCCTCCCCTGTTTCTCGCTTCTCC------------------------------------------------------------ATCCACTCCTCTCACAACAGCTCCCTCCCCTGCCACCATCGTGCCTTCACAAAACCA------CTCGCCTCCTGCATCATCATCACCAACAGCGGCTCCAACACCAACAATGGATCCTTCGCTAGAGAT------------TACCCGGTCAATGTGGGCACGGATGTAAAAAGTACT------------ATGGACAAACTACAATCACTACTTGAAGCTGAAAATACTATCAAA---TCTGGGGAGAAGACTGAAAGAAGTGTAGGATTA------------------TCTATCCTAAATAAACCCCGATGTTATGAATGTGAA---AAAGGACTTGTGATATGTTCAACATGTGCTGGATCTGGGTTATACGTTGATTCCATTTTGGAATCCCAAGGCATTATTGTGAAAGTATGCTGTCTAGGCTGCGGTGGTTCTGGAAGCATATTATGTTTGTCGTGTGGTGGTAGGGGTCATGTA------TGA Blechnum_spicant_VITX ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGTACACATGGTAGCTCTTGGAGGTTCTACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCAACATCGC---TCATCAACGCTCTCC------GTCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGCGAT---CCTTCGGCCAATGAAAATCGTCCCGGAAAGAACCGAAAGAGTACT------------ATCAACAAGCTAGAAGCCTTGCTTTATCCAGACAAAGTTGTG------GCAGAAGAGAAGATTGAGACGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCGATATGGAACAAACCCAGGTGTAATGACTGTGAAACCAAAGGAGTAGTGGTCTGTGCAACATGCACCGGCTCGGGGCTGTACATCGACTCAATCTTGGAATGTCAAGGCATAATAGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCAACGTGTGGAGGTCGGGGTCATCTC------TGA Botrypus_virginianus_BEGM ------------------------------------------------------------------------------------------------------------------------------------------ACCTTTAACTCTGGCAGTTCGTCGGTACACGCACTCGAGTGGTCCGTAGCCGACTTCCATTCA------------------------------CTTTCCGCTTCCTTCCCGATGCTGCCTTCTTCACATGGATGCGATCCTCTTAAGGCT---------------TGTTTTGTCACAGTTCGATGCGCCTTGGATAGGACGAATGGTGCCTTGCCTCGGAGG---ATTATGAGCGGTCACGCC---------------------------------------------------------------------------------------CCAGAAGAAAACAACGAGAAACATATAGAAGTG---CCTTTGACTGCTCATCCGTTTGGCAACAAACCAAGGTGTACTGGATGTGAGGAAAAGGGACTAGTGTTGTGTGCAACATGTGCAGGCTCAGGGTTGTATGTCGACTCAATTCTGGAAAGCCAAGGCATAATTGTTAAAGTCAGATGCCTAGGCTGCGGTGGTTCTGGTAGCATTATGTGCCCTGAATGCGGAGGAAGAGGTCATATAGACCAATAA Cedrus_libani_GGEA ---------------------------------------------------------------------------------------AAGGGGGCATATTCATCTTGCTCCAATCAGGGATGC---------------ATCCAGGCTATCCGCTTTTTCCTTAATACGAAAAGTAGCAGAAGTAGCACTCAG---------ATAAACTCATGCACC------------------------TTCAATAATAGCTTAATACCAAGGCACATATGCACTGCCCAGGCCAATAATAATACAAATCTAAAAGGGGATGACATAGAGCAATACAAGCGCAGTCTA---------------------------------------------------------------------------------------------GAGTCTGTCTTTTGCTATGACAAGGAAGTT------CCGGAGGAGATAATTGAGAAACCAGTTGGGTTGTCGTCTTTGAGTGAATGCAAGATTGGAAACAATCCTCGATGCAATGAATGCGAAGCCAAAGGAGTAGTTATGTGTGATACTTGTGTTGGCTCAGGGCTGTATGTCGAGTCTATCCTCGAGAGCCAAGGAATCATTGTCAAAGTCAGGTGTCTTGGCTGTGGAGGTACTGGGAATATTATGTGCTCAGAATGTGGAGGAAGAGGTCATCTT------TAA Cryptogramma_acrostichoides_WQML ------------------------------------------------------------------------------------------------------------------------------------------ATGACGTCAACTGGTAGCTCAACGACCGTTGCTATGGGGGTCTCTGAT---------------------------------------------CTGTCTGCTGCTGGGGGTTCCATGCGGTTGTCTCATCGC---CCGGTAAAAATTTCC------ATCAACTCCTGTGCC------------------------------AATGGAGCTCCTCACGCAAAC---TCTGTGTCAAATGAACAGTGTCTCAAAAGAAATCGAAACCGTACC------------GTCAACAAATTAGAGTCTTTGCTCCATCCAGACGATGTTGTT------GCAGAAGAGAAGATTGAGAGGCCTGTCGGTTTA---CCAACAACGGGGCGTGCAATACTGAACAATCCTAGGTGTAATGAATGTGAGACCAAAGGACTTGTGGTGTGTGCAACATGCACAGGCTCAGGGCTATACATTGATTCGATTCTAGAATGTCAGGGCATATTTGTAAAAGTGAGATGCTTAGGATGTGGGGGGTCTGGAAATATATTATGTTCGACTTGTGGAGGTCGGGGTCACTTA------TAG Culcita_macrocarpa_PNZO ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGACAATGCTGTG------GCAGAAGAGAAGATTGATACACCTGTAGGTTTA---CCGATAATGGGGCGTACAATTCTGAACAAACCCAGGTGTAGTGAATGTGAAACCAAAGGACTTGTGGTGTGTGCAACGTGCACCGGTTCAGGGTTGTACATCGATTCGATACTGGAAAGCCAAGGCATTATTGTGAAAGTGAGATGTCTAGGATGTGGTGGCTCCGGAAATATTTTGTGCTCTACTTGTGGAGGTAGGGGCCATCTC------TGA Cystopteris_fragilis_LHLE ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCTACATCGC---TCATCAACGCTCTCC------ATTAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTCGGCCAATGAAAATTATCCGGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTAGATTCCTCGCTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCGTGGGGCGTGCAATACTGAACAAACCCAAGTGCAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTATGGAATGTCAAGGCATAATTGTGAAAGTTAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Cystopteris_protrusa_YOWV ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACACGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCTACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCATC------------------------------AATGGAGCTCTTCCCAGAGAC------TCGGCCAATGAAAATTATCCCGGAAAGAACCCAAAGAGTTCT------------ATCAACAAGCTAGATTCCTCGCTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATCGAGAGGCCAGTAGGTTTA---CCTGCCATGGGGCGTGCAATACTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCAGGGCTGTACGTCGACTCAATTTTGGAATGTCAAGGCATAATTGTGAAAGTTAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Cystopteris_reevesiana_RICC ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCTACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTCGGCCAATGAAAATTATCCGGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTAGATTCCTCGCTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCGTGGGGCGTGCAATACTGAACAAACCCAAGTGCAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTATGGAATGTCAAGGCATAATTGTGAAAGTTAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Cystopteris_sp_XXHP ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACACGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCTACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCATC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTCGGCCAATGAAAATTATCCCGGAAAGAACCCAAAGAGTTCT------------ATCAACAAGCTAGATTCCTCGCTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATCGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATACTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATTGTGAAAGTTAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Cystopteris_utahensis_HNDZ ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCTACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTCGGCCAATGAAAATTATCCGGGAAAGAACCCAAAAAGTACT------------ACCAACAAGCTAGAGTCCTCGCTTTATCCAAACAAAGTGGTG------GCAGAAGAGAAGATCGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGTGATACTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATTGTGAAAGTTAGATGCCTAGGATGTGGTGGGTCTGGAAATATTTTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Davallia_fejeensis_OQWW ---------------------------------------------------------------------------------------------------------------------------------------------------ATGGCGGCTGCGAACATGGTGTCTCTCGGAGGCTCCACAGGC------------------------------------------ATTTTATTCAGAGACTCCAAGCTTTCATTTCAATACCGC---TCATCAGCACTCTGC------ATCAAGAGCTGCATC------------------------------AATGGAGCTCTTTCCAGCAAT---TCTTCGGCCAATGAAAATTGTCCAGGAAAGAACCCAAAAAGCACT------------ATCAACAAGTTAGAGTCCTTGCTTTATCCAGACAGGGTGGTG------GCAGAAGAGAAGATTGAGAGACCAGTAGGCTTA---CCGGCCATGGGGCGTGCAATTTTGAACAAACCCAAGTGTAATGATTGTCAAACCAAAGGGCTGGTTGTCTGTGCCACATGCACTGGCTCAGGGTTGTATATCGACTCAATCATGGAAAGTCAGGGCATTCTTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATACTCTATGCTCTACTTGTGGAGG---------------------- Dennstaedtia_davallioides_MTGC ------------------------------------------------------------------------------------------------------------------------------------------ATGGCAGCCCTTGGCGGTTCTATCAGCACTTTGAAGAGTGGCTCTGAT------------------------------------------TTCTCGGTTGCTGGGGTTTCCAAGCTCTCCTCTCAGCATTGC---TCATCAATGCCTTCC------GTCAATTGCTGCAAC------------------------------AATGGGGGTCTTCCCCGAAAC---TCCCTGTCCAGTGAAAACTATCCCAGGATGAACCCCAAGAGAACT------------ATCAACAAGCTAGAATCCCTCCTTTATCCAGACAAAGTAGTT------GCAGAAGAGAAGATTGAGAGGCCAAAAGGTTTA---CCGACCATGGGGCGTGCGATATTGAACGAACCCAGGTGTAATGAATGTGAAACCAAAGGACTTGTGGTGTGTGCAACATGCACTGGCTCAGGGTTGTACATTGATTCAATTATGGAATGTCAAGGCATAATTGTGAAAGTGAGATGCTTAGGATGTGGCGGGTCTGGAAATATCTTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TAA Deparia_lobatocrenata_FCHS ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTAGCCCTCGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCGTTCATCTCAACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGCGAT---CCTTTGGCCAATGAAAATTGTCCTGGAAACAACCCAAAGAGCACT------------GTCAACAAGCTGGAGTCCTTGCTTTATCCAGACAAAGTTGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACGAAAGGACTGGTGGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTAGGATGTGGTGGCTCTGGAAATATTCTATGTTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Didymochlaena_truncatula_RFRB ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCTGCTGCACACATGGTAGCTCTTGGAGCTCCCACACCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTCTCATCTCAACATCGTTGCTCATCAACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTTGGGCAATGAATATTTTCCAGGAAAGAACCCAAAGAGTACG------------ATCAACAAGCTAGAGTCCTTGCTTTATCCCGACAAAGTCGTG------GCAGAAGAGAAGATCGAGAGACCAGTAGGGTTA---CCAGACACGGGGCGTGCAATATTGAACAAACCCATGTGTAATGACTGTGAAACCAAAGGACTGGTTGTCTGTGCAACATGCACTGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATTATCGTGAAAGTGAGATGCGTAGGATGTGGTGGGTCTGGAAATATCCTGTGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Diplazium_wichurae_UFJN ---------------------------------------------------------------------------------------------------------------------AACTCATCAAATGAACGTCTTCCCTGTTGCAGGTCGGCAGCACACATGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------GTTTTGTTCAGCACCTCCAAGCTTTCATCTCAATGTCGC---TCATCATCGCTCTCC------ATCAAGAGCTGTACC------------------------------AATGGAGCTCTTCCCAGCCAT---CCTTCGGCCAATGAAAATTGTCCCGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTTGAGTCCTTGCTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAACAAAGCCAAGTGTAACGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACCGGTTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Dipteris_conjugata_MEKP ---------------------------------------------------------------------------------------------------------------------------------------------ATGGGTTTTTCCGATGGCTTCATTACACCTCTTCGTGGCCTTGAGCTCCCTCAATTGCTTCTTGAG------------------------CTTTCCCCACCGATTCGAGGCCGCATCTTTGCCCAACGGCACCCTTCCGTCGTCTCC------GTCACCTGCTGCTCC------------------------------AATGGTGCCTTGCCCAGGACC---TCCCTGGTTAGTGACAATGTGCCCAGCAAGAACCCGAAAAGCACT------------GTAGACAGATTGGAATCACTCTTCAATCCTAGCAGAGCTGTG------GCAGAAGAGAAGATTGAGGCACCTACAGGAGTT---CCATCAGTAGGGCGCATAGTATATAACAAAGCAAGATGCAGTCAGTGTGAGACCAAAGGACTCGTGCTGTGTGTGACTTGTGCAGGTTCGGGGCTGTACGTTGATTCGATTTTGGAAAGCCAAGGCATTATTGTGAAAGTCAGATGTTTAGGTTGTGGGGGTTCTGGAAGTACTTTGTGTTCGCATTGTGGAGGTAGAGGTCATATG------TGA Encephalartos_barteri_GNQG ---------------------------------------------ATGGTTAGCGTTGCAGTGGCTCCCTCCTTCACAATGTACGCTGCGCGTCCTTGGTCGCTGTTGACTGATGGATCTATCAACCCCGTATCC---GTCTTTCCTAATCATAATCATATGAAGGCTCTTGAGACGAGAGATAGCAGATTGAGC------ATTAGGTCAATGAGC------------------GTCGACAATGGGGCAATTCCGAAGCACATCCCCTTCCAGGGAAATGCAAGCTTAAGAAGAGACAATGCAGGAGAGTACAAAGTTCAGCAATCGAAAAGAAATCCT---------------------------------------------------------------------------------------------GAATGCCTCTTTCGCTACGAGAAGGCCGCT------CCTGAGCAACCAATTGACAAGCCAATTGGGTTG---TCTTTGAGTGAACGAAAGATTGGAAACAATCCAAGATGCATTCGATGTGAAGCTAAGGGAGTCGTCCTGTGCCCTACTTGTACCGGTTCAGGTCTATATGTTGATTCTATTCTCGAGAGCCAAGGAATCATCGTAAAAGTCGGATGCCTTGGTTGTGGAGGCAATGGAAATATTATGTGTTCAAATTGTGGCGGAAGAGGTCATGTT------TAA Equisetum_diffusum_CAPN ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAGCACTTCGA------------------------------------------------------CCCTTCTGCACTACGTCCTCTCTCCTCCCCTCTAGATTG---CCTCCTATTCTTCCC---------------TTTTCC------------------------------AATCCAACCTTGCCTTCTCATCTAAAGCTGGCTAGTTGTGCACTGAAGCACAAGCACAAAAGGAGTGAGATTGGGATTTCTAGAAGCAAGCTTGTGTCCTTAGTTTGTGAACAAAAATGTGTA------GCAGAAGAGAAAATTGAGAAGCCAACAGGCATT---CCTCTGACTGCACGCTTTATCGGAGATAAGCCAGGGTGTCCAAGCTGTGAGGTCAAGGGTCTTGTTTTATGTGTCACATGCACAGGCTCGGGGTTGTATGTTGATTCCATCATGGAAAGCCAAGGCATTATTGTGAAAGTTCGCTGTCTTGGTTGCGGGGGGTCGGGAAGTATAATGTGCTCTGAATGTGGGGGGAGAGGACATCTA------TGA Equisetum_hyemale_JVSZ ------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCCATAATGGCAGCACCTCCACCCTATTGCACT------------------------------------------------------------------ACTTCTCTTCTCCCCTCCAGATTGCCTCCTCTACCC---------------TTTTCC------------------------------AATCCAACCTTCCCTTGCCATCTAAAGCTGGCTAGTTGTATACTGAAGCACAAGTACGAAAGAAGTGAGATTGGGATTTCTAGAGGCAAACCTGTGTCCTTGGTTTGTGAACAAAAATGTGTA------GCAGAAGAGAAAATTGAGAAGCCCATGGGCATT---CCTCTGACTGCACGCTTTATAGGAGATAAGCCAGGGTGTCCAAGCTGTGAGGCCAAGGGGCTTGTTTTATGTATCACATGCACAGGCTCGGGGTTGTATGTTGATTCCATCTTGGAAAGCCAAGGCATTATTGTGAAAGTTCGCTGTCTTGGTTGTGGGGGGTCGGGAAGTATAATGTGCTCCGAATGTGGGGGGAGAGGACATCTC------TGA Gaga_arizonica_DCDT ------------------------------------------------------------------------------------------------------------------------------------------ATGACATCCCTTGGTAGGTCCATGGCTGTTGCAGTCCGCAGCTCTGAT---------------------------------------------CCGTCTACTGCTGGGGGTTCGATGCTCCTGTCGCATCGTCGCCCGATAAAAATTTCA------ATCAATTTCTGTGCC------------------------------AATGGAGCTCCTCACTCAAAC---TATATGTCAAATGAACACAGTGGGCAAAGGGACACAAAGCGCACC------------ATCAACAAACTAGAGTCTTTGCTTTATCCAGACAAGGTTGTG------GCAGAAGAGAAAATTGAGAGGCCAGTGGGTTTA---CCAATCAAGGGGCGTGCAATATTAAACAATCCCAGATGCAATGAATGTGAGACCAAAGGACTCGTGGTGTGTGCGACATGCACAGGTTCAGGGCTATATATTGATTCTATCATGGAATGTCAGGGCATATTTGTGAAAGTAAGATGCTTAGGATGTGGCGGATCTGGAAGTATATTATGCTCTATGTGTGGAGGTCGCGGTCACTTG------TAG Gymnocarpium_dryopteris_HEGQ ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTAGCCCTTGGAGGTTCCACAACC------------------------------------------ATTTTGTTCAGGGGCTCCAAACTTTCATCTCAACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAAAC---CCTTCGGCCAATGAAAATTGTCCCGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTAGAGTCCTTAGTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAATAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCCGGGCTGTATATCGACTCAATTTTGGAATGCCAAGGCATAATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACATGTGGAGGTCGTGGTCATCTC------TGA Homalosorus_pycnocarpos_OCZL ---------------------------------------------------------------------------------------------------------------------------------------------------ATGGCGGCTGCACACATGGTAGCCCTTGGAGGTTCCACGGCC------------------------------------------ATTTTGTTAAGGGTCACCAAGCTTTCATCTCAACATCGC---CCATCAACGCTCTCC------ATCAAGAACTGCACC------------------------------AATGGAGCTCTTCCCACAGAC---CCTTCGGCCAATGAAAATTGTCCCGGAAAGAACCCAATGAGTACT------------ATCAACAAGCTAGAGTCCTTGCTTTATCCAGACAAAGTCGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCGATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTGGGATGCGGTGGGTCTGGAAATATTCTATGCTCAACTTGCGGAGGTCGGGGTCATCTC------TGA Hymenophyllum_bivalve_QIAD ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAGATTATCGGTGGGTGTGTCGCTTCTCTGAGCGGGCTGGAGCGTTCGGGTTTCTTCTTTGGGCGTGTCTCGCCTGTATCCGGGCAAAGATCTACACAAAGGCGCCGTCCGCTTGTATCTAGCACA------------TGCTCC---------------------------ACCAATGGCGCTTTGCCGAGGAAT------TTGGTGAATGACAATCTGCCAGGCAAGAACCCAAAGAGAACT------------GTTGACAGATTGGAATACCTATTGTACCCTGACAGGGCTGTT------GCAGAAGAGAGTATTGAGACACCTACAGGCATT---CCATTATTAGGGTGCTCAATTCAAAACAATCAAAGCTGCACTCAGTGCGAGTCTAAAGGACTTGTGCTGTGTGCCACTTGTGCAGGGTCAGGGTTGTACATTGATTCAATCTTGGAAAGCCAAGGCATTATTGTGAAAGTTAAATGTTTAGGCTGTGGTGGTTCTGGAAGTATTCTGTGTCCTAGCTGTGGAGGTAGAAGTCCTCTT------TGA Hymenophyllum_cupressiforme_TRPJ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT------GCAGAAGAGAGTATTGAGACACCTACAGGCAGT---CCATTATTAGGGTTCTCAATTCAAAACAATCAGAGGTGCACTCAGTGTGAGTCTAAAGGACTTGTGCTGTGTGTCACTTGTGCAGGGTCAGGGTTGTACATTGATTCCATATTGGAAAGCCAAGGCATTATTGTGAAAGTTAAATGTTTAGGCTGTGGTGGTTCTGGAAGTATTCTGTGTCCTAGCTGTGGAGGTAGAAGTCATCTT------TGA Illicium_parviflorum_ROAP ------------------------------------------------------------------------------------------ATGACGAGTTTTCTATCCCAAATCTCTGCAAGTCCCCCT---------CTATATCCTTCACCCTTCAATCGAAATGCAATCCCTCTATCTCAGCTTCGATTT---------------------------TGCACCCTGTTCAATGGAGGAAAGGAACCCAGGAACATGTTCCACGCTTTCTCCCAACACAGCTCGGTTCAGGTCGCTTCAAGTTCAATACGTGACATTCAGAGATGCAAAAGCAATCTC---------------------------------------------------------------------------------------------GAATCTTTATTCTGTTATGACAAGCCTATT------CCAGAGGAAATCATTGAGAAGCCAGTAGGCCTG---TCTTTGAGTGAAAGAAATATTGGTAATAACCCTCGTTGCATCGATTGTCAAGCGAAAGGTGCAGTCTTGTGTAAAACTTGCTCCGGTTCGGGTTTATACGTTGATTCTATACTAGAGAGCCAAGGAATCATTGTGAAA????????????GGTTGTGGAGGCACTGGTAA---------------------------------------------- Leucostegia_immersa_WGTU ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCAGCTGCAAATATGGCAGCCTTTGGAGGCTCTACAGCC------------------------------------------ATTTTTTTCGGGGGCTCCAAACTTTCATCTCAACATCGC---TCATCAATGCTCTGC------ATCAATAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTTGGCCAATGAAAATTGTCCAGGAAAGAATCCAAAGAGTACT------------ATCAACAAGCTAGAGTCCTTACTTTATCCAGACAAAGTTGTG------GCAGAAGAAAAGTTCGAGAGACCAATAGGTTTA---CCAGCCATGAGGCGTGCAGTACTGAACAAACCCAAGTGTAATGAATGTGAAACCAAAGGACTGGTTGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAGTATCCTATGCTCTACTTGTGGAGGTCGCGGTCATCTC------TGA Lindsaea_linearis_NOKI ---------------------------------------------------------------------------------------------------------------------------TGCTTCCTCACTCACATTTCTTCCTGGAGGTTTCCATCCATGGCAGCCCTTAGTGGGTGTATGCCCACAACC------------------------------------ATAACTCCTGTTGCTGGGCGTCCCTCGTCGCAACATCGCCCATCTACGATGCCTTCT------GTCTTGTGCTGTACC------------------------------AATGGAGCCAAACCCAGAAGT---TCTCTGGTCAATGACAATTGTCCTGGGAAGAATGCTAAGAGTACC------------ATCAACAAACTGGAAGCCTTGCTGTATCCAGACAAAGTCGTG------GCCCAAGAGAAGATCGAGGCACCTTTAGGCTTA---CCAAAAGATGGACGTCAAATCACGGGCAAGCCCAGGTGTAACGAGTGTGAAACGAAAGGTCTAGTGGTATGCGCGACGTGCACAGGTTCAGGGCTTTACATTGACTCAATTCTTGAGTGTCAGGGGATTCTTGTCAAAGTAAGATGTCTAGGATGTGGTGGCTCCGGGAATATACTGTGCACTAACTGTGGAGGAAGGGGTCACCTT------TAA Lindsaea_microphylla_YIXP ---------------------------------------------------------------------------------------------------------------------------------------------------AGGCTTCCATCATCCATGGCAGCCCTTAGTGGGTGTATGCCCACAACC------------------------------------ATAACTCCTGTTGCTGGGCGTCCCTCGTCGCAACATCGCCCATCTACGATGCCTTCT------GTTTTGTGCTGTACC------------------------------AATGGAGCCATCCCCAATTCT------CTGGTCAAAGACAGTTGTCCTGGGAAGAATGCTAAGAGGACC------------ATCAACAAACTGGAAGCCTTGCTGTATCCAGACAAAGTCGTG------GCCCAAGAGAAGATTGAGGCACCTTTAGGCTTA---CCAAAAGATGGACGTCAAATCACGGGCAAGCCCAGTTGTAGCGAGTGTGAAACGAAAGGTCTAGTGGTATGCGCGACGTGCACAGGCTCAGGGCTTTACATTGACTCAATTCTTGAGTGTCAGGGGATTCTTGTCAAAGTAAGATGTCTAGGATGTGGTGGCTCCGGGAATATATTGTGCACTAACTGTGGAGGAAGGGGTCACCTT------TAA Lygodium_japonicum_PBUU ------------------------------------------------------------------------------------------------------------------------------------ATGGCTTTTCTCGCTAACACAGTCGCCTTTGCAAACCAGCTGCAGGGACCAACGGCC------------------------------------------TTTCTCCCGCATCGTCATCATCACGGTCATCAGCATCACTTTATCTTTCGC---------------------TGCACC------------------------------AATGGCGCTTTCCCCAGAACC---TCACTGGTAAATGACAATCTACCTAGCAAGAATCCAAAAAGTACC------------ATTGACAAATTGGAATCACTGCTGTATCCTGACAGTTGTGTG------GCACAAGAGAAGATTGAGGCACCTACGGGTATA---CCTTCAGTGGGGCGAACGATTCATAACAAGCCCAAATGCAGCCATTGTGAGACGAAAGGACTTGTGCTATGTGCAACATGTTCAGGTTCTGGATTGTACATCGATTCAATCTTGGAAAGTCAAGGCATTATTGTGAAAGTCAGATGCTTAGGATGTGGTGGTTCTGGGAGTATTTTGTGCTCTTACTGCGGGGGAAGAGGTCATACT------TAA Myriopteris_rufa_GSXD ------------------------------------------------------------------------------------------------------------------------------------------ATGGCGTCCCTTGGTAGCTCCATGGCTGTTGCAATCGGCAGCTCTGAT---------------------------------------------CAGTCTACTGCTGGGGGTTTGATGTCCTTGTCTCATCGTCGCCTGGTGAAAGTTTCA------ACCAACTTCTGTGCC------------------------------AATGGAGCTCCTCACTCAAAC---TATGTGTCAAATGAACAGTGTTTTGAAAGGGACTCAAAGCGTACC------------ATCAACAAATTAGAGTCTGTGCTCTATCGAGACAAGGTTGTT------GCAGAAGAGAAAATTGAGAGGCCAGTGGGTTTA---CCAACGAAGGGGCGTGCAATACTGAACAATCCTAGGTGTAATGAATGTGAGACTAAAGGACTCGTGGTGTGCGTGACATGCACAGGCTCAGGGCTATACATTGATTCAATCATGGAATGTCAAGGCATTTTCGTGAAAGTGAGATGCTTAGGATGCGGTGGATCTGGAAATATATTATGCTCTACTTGTGGAGGTCGCGGTCACTTA------TAG Nephrolepis_exaltata_NWWI ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGCAGCCCTTGGAGGCTCCACAGCT------------------------------------------ATCCTGTTCAGGAGCTCCAAGCTTTCATCTCAACATCGC---TCATCAATGCTCTCG------ATCAGGGGCTGCAAC------------------------------AACGGAGCCTTTCCCAGTGATCTTTCTTCGACCTACGAAAATTGTCCAGGAAAGAACCCAAAGAGCATC------------GCCAACAAGCTAGAGTCCTTACTTTATCC----------------------------------GAGAGACCAGAAGGTTTA---CCAGCCCTGGGGCGTGCAATTTTGAACAAACCCAAATGTAATGATTGTAAAACCAAAGGGCTCATTGTCTGTGCAACATGCGCCGGCTCTGGCCTGTACATCGACTCAATCATGGAATCTCAAGGCATAATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATCCTATGCTCTACTTGTGGAGGTCGGGGCCATCTT------TGA Notholaena_montieliae_YCKE ---------------------------------------------------------------------------------------------------------------------------------------------------AGGTCCTCCACAGGCATGACGTCCTTTGGTAGCTCCATG---------------------------------------------GCTGTTGCAGTCGGCGGCTCGATACCCGTGTCACATCGTCGCTTGGTGACAATGTCG------GTCAATTTCTCTGCC------------------------------AATGGAGCTCCTCACTCCAAC---TATAAGTCAAATGAACATGGTATGGAAAGGAATTCAAAGCGTACC------------ATCAACAAAATAGAGTCTCTGCTGTATCCAGAGAAGGTTGTG------GCAGAAGAGAAAATTGAGAGGCCAGTGGGTTTA---CCAATGAAGGGGCGCGCAATATTAAACAACCCTAGATGCAATGAATGTGAGACCAAAGGACTCGTGGTTTGTGCGACATGCACAGGTTCAGGGCTATA---------------------------------------------------------------------------------------------------------------------- Onoclea_sensibilis_HTFH ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCATCGGAGGTTCCACAGCC------------------------------------------CTTTTGTTCAGGGGCTCCAAGCTTTCATCTCAACAGCGC---TCTTCAATGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGCGAT---CCTGAGGTCAATGAAAATTTTCCCAGAAAGAACCCAAAGAGTACT------------ATAAACAAGCTGGAGTCCTTGCTTTATCCAGACAAAGTCGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGATTCAATTATGGAATGTCAAGGCATAATGGTGAAAGTGCGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Ophioglossum_petiolatum_WTJG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGAGTGTGCAACTT---CCTTTGGATGCTTGTATGACAGCAAACAAAACAAAGTGTTCAGGATGCGATGAAAAAGGACTTGTATTGTGTGCAACATGTGAAGGCTCAGGATTGTATGTTGATTCAATCTTGGAAAGCCAGGGCATAATCGTGAAAGTCAGATGCTTAGGTTGTGGTGGTTCTGGTAGCATTATGTGCCCAGACTGTGGCGGGAGAGGTCATTTT------TAA Ophioglossum_sp_QHVS ---------------------------------------------------------------------------------------------------------------------------------------CAAGCTGCTTCTTCTTTCTCCTCTTTCTCTCCAGCCTTTTCTGGACATTCG---------------------------------------------ATGATTTCCACGACACCAAAGATGATAATGTCTTCTCTTTCAATCGCTTCTTCTCAGTCGATGCTGCATTTCTGT---------------------------------AATGGATGCCCTTCCTATCATTCTCCTTATGGCACCTCTCGGTGCTTC---TCTCACAGCTCCAAT---------------------------GGCGCCTTGCTCCATGAATTGAAGAAGAACAACGTCCAGCAAGAAAGGAGAGAAAAGAGTGTGCAACTT---CCTTTGGATGCTTGTATGACAGCAAACAAAACAAAGTGTTCAGGATGCGATGAAAAAGGACTTGTATTGTGTGCAACATGTGAAGGCTCAGGATTGTATGTTGATTCAATCTTGGAAAGCCAGGGCATAATCGTGAAAGTCAGATGCTTAGGTTGTGGTGGTTCTGGTAGCATTATGTGCCCAGACTGTGGCGGGAGAGGTCATTTT------TAA Osmunda_javanica_VIBO ---------------------------------------------------------------------------------------------------------------------------------------------------CACACATCGAGCGACATGGGCGCTCTCGGTGGCCTCGTTCCCTTTTTAAGCAGGCTCGAGTTATCAGAGTCCTTTCTTGGGCGTTGCACGCTTGTCTCAGGTCACATTTCTGCACATGGGCGC---CCTTCTTCTGTACCT------GTTCTATGCTGTACC------------------------------AATGGCGCTTTGCCTAGGGGC---TCCCCGGTGAATGACAATTTGCCCGGCAGGAACCCAAAGAGCACTGCAGACCTTCACCTAAGCAGATTGGAATGCCTCTTTAACCATGACAGAGCTGTG------GCAGAAGAGAAGATCGAAAAACCCACAGGTGTG---CCATCGACTGGGCGCACGATTGACAACAAACCACGGTGCACTCAGTGTGAAACCAAGGGACTTGTACTGTGTGCAACATGTGCAGGTTCAGGGTTGTACATTGATTCAATCTTGGAAAGCCAGGGCATTATTGTTAAAGTTAGATGCCTAGGCTGTGGTGGTTCTGGAAGCATTTTGTGTTCAAAATGTGGAGGAAGGGGCCATGTT------TGA Parahemionitis_cordata_ZXJO ---------------------------------------------------------------------------------------------------------------------------------------------------TCTGGCTACTGCTGGGGGTTCGATGCTCCTGTCACATCGTCG------------------------------------------CCCGGTAAAAATGTCAATCAATTCCTGTGCCAA------------------------------------TGGTGCTCC------------------------------TCACTCAAACTATATGTC?AA------------------------------AGGGATAAAAAGCGTACC------------ATCAACAAACTAGAATCTTTGCTGTATCCAGACAAGGTTGTG------GCAGAAGAGAAGATTGAGAGGCCAGCGGGTTTA---CCAATGGAGGGCCGTGCAATATCAAACAATCCCAGATGCAATGAATGTGAGACCAAAGGACTTGTGGTGTGTGGGACATGCACAGGTTCAGGGCTATATATAGATTCAATTATGGAATGTCAGGGCATATTTGTGAAAGTAAGATGCTTAGGATGCGGTGGATCTGGAAATATATTATGCTCTACTTGTGGAGGTCGCGGTCACTTA------TAG Peperomia_fraseri_XSZI ---------------------------------------------------------------------------------------------------------------------------------------------ATGGCCTCCTTACCTATACAATTACCACCCCTCCCTTCCTCTACG---------------------------------------------CTGCTCCGCCGCCGCACCCATTTCTCCAAGCTCGCCTGTTTCCCCCACTCTGCCAATGGCTCCTCCTCCTGCGGATCGGTTGCTGTTAATTCTAAGGATCCATACAGA---------------------------------------------------------------------------------TACAAAAGTCTGGAAGGTTTTTTCTCTTACGACAAACCAATA------CCAGAAGAAATTATTGATAGGCCAATTGGGCTG---GAATTAAGTGAAAAAAATGTTGGTAATAATCCTCGTTGCATCGACTGCCGGGCAAAAGGTGCAGTTCTTTGTGCGACTTGTGCTGGTACGGGATTGTATATAGATTCTATAATGGAGAGTCAAGGAATCATAGTCAAAGTCCGGTGTCTTGGTTGTGGTGGCACCGGCAACATCATGTGCTCTGAATGTGGAGGACGAGGGCACCTT------TGA Phlebodium_pseudoaureum_ZQYU ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGGCTACAAACATGGCGTCCCTTGGAGGCTCCACAGCC------------------------------------------ATTTCATTGAGGGACTTCAAGCTTCCATCTCAATACCGC---TTATCAGCGCTCTCC------ATCAAGAACTGCACC------------------------------AACGGATCCCTTCCCAGCGAA---CCTTTGGCCAATGGAAATTATCCAGGAAAGAACCCAAAGAGTAGT------------ATCAACAAGCTAGAGTCCCTGCTTTATCCTGACAGAGTGGTG------GCAGAAGAGAAGATTGAGGGACCAGTAGGCTTA---CCGGCCATGGGCCGTGCAATTTTGAACAAACCCAAGTGTAAGGACTGTAAAACCAAGGGGCTGGTTGTCTGTGCGACATGCACTGGCTCAGGGCTTTACATCGACTCGATTATGGAAAGTCAGGGCATTATTGTGAAAGTGAGATGCCTAGGATGTGGCGGGTCTGGAAATATTCTATGCTCTACGTGTGGAGGTCGGGGTCATCTT--------- Phymatosorus_grossus_ORJE ---------------------------------------------------------------------------------------------------------------------------------------------------ATGCTGGCTACAAGGATGGAGTCCCTTGGAGGGTCCACAGCC------------------------------------------ATTTTAGTGAGGGATTCCAAGCTTTCATCTCAATACCGC---TCATCAGCGCTCTCC------ATCAAGAACTGCATC------------------------------AACGGAGCCCTTCCCACAGAA---CCTCTGGCCAATGGAAATTATCCAGGAAAGAACCCAAAGAATAGT------------ATCAACAAGTTAGAATCCCTGCTGTATCCCGACAGGGTGGTG------GCAGAAGAGAAGATTGAGGGACCAGTAGGCTTA---CCGGCCACAGGGCGTGCGATTTTGAACAAACCCAAGTGTAATGACTGTCGAACCAAGGGGCTGGTTGTTTGTGCGACATGCACCGGCTCAGGGCTGTACATCGACTCGATTATGGAAAGTCAGGGCATTATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATGTTCTATGCTCTACGTGTGGAGGTCGGGGTCATCTT------TGA Pilularia_globulifera_KIIX ------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAGCTTCTAGTGGCTTCTACACCATATCTGGA------------------------------------------------------TCATCTGTTGGAGCTAAATTCTGTGTGGGACATCCCCCATCACCGTCTCTCTTA------CTCAGAAGTCCTTTC------------------------------AATGGCTCCTCCTTCGTTAGATGCTCCCTGGCTAAT------TCCCCTGGTAAGAATCCGAAGAGTACA------------AGCGAGAAACTAGAGTCTCTTTTGTATCCTGATAACCCTGTG------GCTCGAGAGCATATTGCATCCCCTGTTGGTTTG---CCAGCAAATGGACATGTAGTTTTTGATAAACCTGGATGTGCCGAATGTGAAACGAAAGGGCTAGTGCTTTGTGCAACATGCAATGGTTCAGGGCTGTATGTTGATTCAATCTTGGAAAGCCAAGGGATTATTGTTAAAGTACAGTGTATGGGATGTGGTGGCTCTGGAAATATATTGTGTGCCGTCTGTGGTGGCAGGGGTCACCTG------TAA Pityrogramma_trifoliata_UJTT ------------------------------------------------------------------------------------------------------------------------------------------ATGACAATCCTTGGTAGCTCCAGGGGCGTCGCAAGCTACAGTTCTGAT---------------------------------------------ATCTATGCTGCTGGGGCTTCCAATCTCTTGTGTCATCAAAGC?CCGTCAGAATATCC------ATAGTTTCGTGCGCC------------------------------AATGGAGCTTCATACTTAAAT---TCTGTGCGAAATGAA---AGTCTTGGAAAGACCTCAAAGCATGCC------------ATCAACAAAATAGAATCTTTGCTGTATCCAGACAAGGTTGTT------GCAGAAGAGAAGATTGAGAAGCCTGTGGGTTTA---CCAACAAAGGGGCGTGCAATATTGAACCGTCCAAGGTGTAATGATTGTGAGACCAAAGGACTTGTTGTGTGCACAACATGCACAGGCTCAGGATTATATATTGATTCAATCCTGGAATGTCAAGGCGTACTTGTAAAAGTAAGATGCTTGGGATGCGGGG-------------------------------------------------------- Plagiogyria_japonica_UWOD ---------------------------------------------------------------------------------------------------------------------------CTACAATGTTTTCCTGTTGCAGCCACGCTGCACACATGGCAGTCCTTGGTGGGTGCGTCGCCCCTCCGATCAACGGCT------------------------------CTTATCTCTTTGTTGGGCGCCCCAAGTTCTCACCACAAC---ATCGCCCATCAACGT------TTTCAGT------?C------------------------------GATGGTGCCTTTCCAAGAAAA---TCCCTGGTCAATGATAATCGTCCAAGTAAGAGCTCAAAGAGCACT------------ATCAACAAACTAGAATTCCTACTCTATCACGACAATGCTGTG------GCAGAAGAGAAGATTGAGGCACCTGTAGGTTTA---CCGATGATGGGGCGTGCAATTCTGGACAAACCCAGGTGTAGTGAATGTGAAACCAAAGGACTAGTGGTGTGTGCAACGTGCACCGGTTCAGGGTTGTACATTGATTCGATACTGGAAAGCCAAGGCATTATTGTGAAAGTGAGATGTCTAGGATGTGGTGGTTCCGGAAATATTTTGTGCTCTACTTGTGGAGGTAGGGGCCATCTC------TAA Pleopeltis_polypodioides_UJWU ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGGCTACGAGCATGCAGTCCCTCGGAGGGTCCACATCC------------------------------------------GTTTTGTTGAGGGACTCCAAGCTTTCATCTCAGTACCGA---GCATCAGCGCTCTCC------ATCAAAAACTGCATC------------------------------AACGGAGCCCTTCCCAGCGAA---CCCTTGGGCAATGGAAACTATCCAGGAAAGAACCCAAAGAGTAGT------------GTCAACAAGCTAGAGTCCCTGCTATATCCCAACAGAGTGGTG------GCAGAAGAGAAGATTGAGGGACCAGTAGGGTTA---CCGGCCATGGGGCGTGCAGTTTTTAACAAACCCAAGTGTGATGACTGTCAAACCAAGGGGCTGGTTGTCTGTGCGACATGCACTGGCTCGGGGCTGTACATCGACTCGATTATGGAAAGTCAGGGCATTATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATGTTCTATGCTCTACGTGTGGAGGTCGGGGGCACCTT------TGA Polypodium_amorphum_YLJA ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGGCTACAAGCATGGAGTTTCTTGGAGGGTCCACAGCC------------------------------------------ATTTTATTGAGGGACTCCAAGCTTTCATCTCAATACCGC---TCATCAGCGCTCTCC------ATCAAGAACTGCACC------------------------------AACGGAGCCCTTCCCAGCGAA---CCTTTGGCGAATGGAAATTATCCAGGAAAGAACCCAAAGAGTAGT------------ATCAACAAGCTAGAGTCCTTGCTTTATCCCGACAGAGTGGTG------GCAGAAGAGAAGATCGAGGGACCAGTAGGCTTA---CCGGCCACGGGGCGTGCAATTTTTAACAAACCCAAGTGTAATGACTGTCAAACGAAGGGGCTGGTTGTCTGTGCGACATGCACTGGCTCAGGGCTGTACATCGACTCGATTATGGAAAGTCAGGGCATTATCGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACGTGTGGAGGTCGGGGGCATCTT------TGA Polypodium_glycyrrhiza_CJNT ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGGCTACAAGCATGGAGTTCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTATTCAGGGACTCCAAGCTTTCATCTCAATACCGC---TCATCAGCGCTCTCC------ATTAAGAACTGCACC------------------------------AACGGAGCCTTTCCCAGCGAA---CCTTTGGCCAATGGAAACTATCCAGGAAAGAACCCAAAGAGTAGT------------ATCAACAAGCTAGAATCCCTACGTTATCCCGACAGAGTGGTG------GCAGAAGAGAAGATTGAGGGACCAGTAGGCTTA---CCGGCCGTGGGGCGTGCAATTTTTAACAAACCCAAGTGTATGGACTGTCAAACCAAGGGGCTGGTTGTCTGTGCAACATGTACTGGCTCAGGGCTGTACATCGACTCGATTATGGAAAGTCAGGGCATTATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACATGTGGAGGTCGGGGTCATCTT------TGA Polypodium_hesperium_B_IXLH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGTAGT------------ATCAACAAGCTAGAGTCCTTGCTTTATCCCGACAGAGTGGTG------GCAGAAGAGAAGATCGAGGGACCAGTAGGCTTA---CCGGCCACGGGGCGTGCAATTTTTAACAAACCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Polypodium_hesperium_GYFU ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAGTTCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTATTCAGGGACTCCAAGCTTTCATCTCAATACCGC---TCATCAGCGCTCTCC------ATCAAGAACTGCACC------------------------------AACGGAGCCCTTCCCAGCGAA---CCTTTGGCCAATGGAAACTATCCAGGAAAGAACCCAAAGAGTAGT------------ATCAACAAGCTAGAGTCCCTACGTTATCCCGACAGAGTGGTG------GCAGAAGAGAAGATTGAGGGACCAGTAGGCTTA---CCGGCCGTGGGGCGTGCAATTTTTAACAAACCCAAGTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Psilotum_nudum_QVMR TCGAAATTACTTGGCATTGGGATTGAGATTCACTGCAGCCCAAGGATGGCTGTTTTGGGTGGCGGATGTGGGTGCGATATTTATGCAGCAAACAGGCCTGTGCATCTCTCTGAGCATGGCTTCTGTAAAGTGTTTTCGTTGTGCGTGATGCCTTCGTCTCCACCAAGGCTCGCTTCTCTCAATTCTTCTTTTGTCCGAGCTCTGTGTAGC---------------------------------------------------------------------------------------------------------------------------------CATGGTGGTTTCTCCCGGAGA------ACTCAGGTTAGTGGCATGCTGGGAAGGAATTCTCTGAATGGTACAAACTACTACAAAAATGGCTTAGGATTTGACTTTCATGAAATCAGATCTAGT------TCTGAAGAGAATGAAGGGAAACTGGTAGAAGTA---TCTTTGACTACATGCTTAATTGGAAACAAAGCAGTGTGTACTCAATGTGATTCCAAGGGACTTGGACTATGTGCAACATGTGCTGGCTTGGGATTATATGTTGATTCAATTTTGGAAAGTCAAGGCATAATTGTGAAAGTTAAATGCATTGGTTGTGGTGGTTCTGGTAGCATCTTGTGCTCAGGATGTGGAGGGAAAGGTCATCTT------TAA Pteridium_aquilinum_Contig12715_13944 ------------------------------------------------------------------------------------------------------------------------------------------ATGACAGCCCTAGGTGGTTCCATTGCCACTTTGGTGAGTGGC---------------------------------------------------TCCGCTGCTGGTGGTTCCAAGCTCTCCTCTCATCATCGC---CCATCAATGGTTTCT------ATCACCTGCTGCACC------------------------------AATGGCAGTCTTTCCGGAAAC---TCCATGTACAATGAAAATTGCCCTGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTAGAATCCTTGCTTTATTTAGACAAAGTTGTR------GCGGAGGAGAAGATTCAGACGCCAGTAGGTCTG---CCAACCATGGGGCGTGCTATATTGAACAACCCCAGGTGTAATGAATGTGATACCAAAGGACTCGTGGTGTGCGCAACATGTACTGGCTCAGGGTTGTACATCGATTCAATTATGGAATGTCAAGGCATATTTGTGAAAGTGAGATGC--------------------------------------------------------------------- Pteris_ensiformis_FLTD ---------------------------------------------------------------------------------------------------------------------------------------------------ATGACGAGCTCCAAGGCAGTTGCAATCTGCAGCTCTAAT---------------------------------------------CTGTCGGCTACAGGGGCTTTCAAGCTCTTGTGTCATCCTAGCCTGGTGAGAATATCC------ATCAATTCTTGCTCC------------------------------AATGGAGCTCCGTACACAAAT---------------------------------------------------------------------------------------TCCCTGAAAGTTGTT------GCAGAAGAGAAGATTGAGAGGCCCATCGGTTTA---CCCACAAAGGGTCGTGCAATATTGAACAATCCAGGATGTAATGATTGTGAGACTAGAGGACTTGTTGTGTGCGCAACATGCACAGGCTCAGGACTATATATCGATTCAATCCTGGAATGTCAAGGCATATTTGTGAAAGTAAGATGCTTGGGATGCGGCGGATCTGGAAATATTTTATGCTCAACTTGCGGAGGTCGCGGCC-------------- Pteris_vittata_POPJ ------------------------------------------------------------------------------------------------------------------------------------------ATGACGTCCCTCGGTAGCCCCAGGGCAGTTGCAATCTGCAGTTCTAGT---------------------------------------------CTTTCGGCTGCCGGGGTGTCCAAGCGCTTGTGTCATCGTGGCCTGGTGAGAATATCC------ATCAATTCATGCGCC------------------------------AATGGAGCTCTTAACGCAAAT---TCCGTGTCAAATGAACAGTGTCTCGACAGGAACTCCAAGGGCACC------------ATGAACAAATTAGAATCTTTGCTCTATCCAGACAAGGTTGTT------GCAGAAGAAAAAATTGAGAGGCCAGTTGGTTTA---CCAACGAAGGGTCGTGCAATATTGGACTATCCAAGGTGTAATGACTGTGAGACCAAAGGACTTGTTGTGTGTGCAACATGCACAGGCTCGGGGCTATATATTGATTCAATCCTGGAATGTCAAGGCATATTTGTGAAAGTAAGATGCTTGGGATGCGGTGGATCTGGAAATATTTTATGCTCAACTTGTGGAGGTCGGGGTCACTTG------TAG Sceptridium_dissectum_EEAQ ---------------------------------------------------------------------------------------------------------------------------------ATGGCCATCTCGGTACACGCTCTCGCGTGGTCCTTGGCCGATTTTCGTCAATTTCCCGCTTCCTTCCCG---------------------------------------------------ATGCTACCTTCTTCACATGGATGCGCGTCGCTTAAGACT---------------TGTTTTGTCACAGTTCGCTGCGCCCTGGATAGAACGAATGGTGCCTTGCCTCGGAGG---ATTATGAGCGGCCGCGTC---------------------------------------------------------------------------------------CCGCAAGAGAACAAAGAGAAACATTTAGAAGTG---CTTTTGACTGCTCACCCGATTGGCAACAAATCAAGGTGTACTGGATGTGAGGAAAAGGGACTAGTGTTGTGTGCAACATGTGCAGGCTCAGGGTTGTATGTCGATTCGATTTTGGAAAGCCAAGGCATAATTGTTAAAGTCAGATGCCTAGGCTGTGGTGGTTCTGGCAGCATCATGTGCCCTGAATGCGGAGGAAGAGGTCATGTT------TAG Thelypteris_acuminata_MROH ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGTCTGCACAAATGGTAGCCCTCGGAGGTTCAACAAAC------------------------------------------ATTTTGTTCGGGGGCTTCAAGCTTTCATCTCAACAGCGC---TCATCAACGCTCTTT------ATCAAGAACTGCATC------------------------------AATGGAGCTCTTCCTGCAGAG---CCTTCGGCCTATGAAAATTGTCCCGGAAAGAATCCAAAGAGTACT------------ATCAACAAGCTAGAGTCCTTGCTTTATCCAGATAAAATTGTG------GCAGAAGAGAACATTGAGAGGCCAGTAGGTTTG---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACAGGCTCAGGGCTGTACATTGACTCGATTTTGGAATGTCAAGGCATAATTGTGAAAGTGAGATGCCTAGGATGCGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTAGGGGTCATCTC------TGA Thyrsopteris_elegans_EWXK ------------------------------------------------------------------------------------------------------------------------------------------ATGGCAGTCCTTGGTGGGTGCGTCGCCCCTCCCATCAACGGCTCTGAT---------------------------------------------CTCTTTGGTGCGCGTTCCAAGCTCTCATCACAACATCGC---CCATCAACGTTTTCA------GTCATGTGCTGCACC------------------------------AATGGCGCCTTCCCGAGAAAC---TCCTTGGTCAATAATGATCGTCCCGGTAAGAACCCAAAGAGCACT------------ATTGACAAACTAGAATCCCTGCTCTATCCCAACAATGCTGTG------GCGGAAGAGAAAATTGAGACACCTGTAGGATTA---CCGATGATGGGGCGTACAATTCTGAACAAACCCAGGTGTAGTGAATGTGAAGCCAAAGGACTTGTGTTGTGTGCAACGTGCACCGGTTCAGGGTTGTACATTGATTCGATACTGGAAAGCCAAGGCATTATTGTGAAAGTGAGATGTCTAGGATGTGGTGGTTCTGGAAATATTTTGTGCTCTACTTGTGGAGGTAGGGGTCATCTC------TGA Tmesipteris_parva_ALVQ ------------------------------------------------------------------------------------------------------------------------------------------ATGGGCGCTTTGGGCGCCTGTGGGCGCCTCACTTTTGCAGCAAGCGTGCCTGTGGATCTGCCTGATCGTGGC---------------------CTTTGTGAAGTGCGGGGGCGGATTTCTCTGAGTTCATCTTTTGTCCCAGCGCTGCAT------AGCTTGGATGGTACC------------------------------GACGGCGGTTTGTCACGGAGA------ACTCAGGTTAGTGGCATGCTTGGCAGGAATTCTATGAGTGGTTCAAACTGCTACAGAAATGGCTTGGAATCTATCTTTCACCAAATCAGATCTATT------CCTGAAGAGAATGAACAGAAATTGGTGGAAGTG---CCTTTGCCTGTGTGCATAATTGGCAACAAACTGGTGTGTATTCAATGTGATTCCAAGGGACTTGTACTATGTGCAACATGTGCTGGCTCAGGATTGTATGTTGATTCAATCTTGGAGAGTCAAGGCATAATTGTGAAAGTTAAATGCATTGGTTGTGGTGGTTCGGGTAGCATCATGTGCTCAGGATGTGGAGGAAAAGGTAAATTT------TGA Vittaria_lineata_SKYV ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGGGAAAATACATGCTATACACAACAATATTAATTGTGATGAATGTGAGGCGAAAGGACTGGTGGTTTGTGTCACATGCTCAGGTTCAGGGCTGTACGTTGATTCAATCATGGAAAGTCAAGGGATTTTCGTGAAAGTGAGATGCCTAGGTTGTGGCGGCTCTGGTAGTACATTATGCACAACTTGTGGTGGTAGAGGGCATTTAAAACTTTGA Woodsia_ilvensis_YQEC ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCCTCGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGAGCTCCAAGCTTTCATCGCAACATCGC---TCATCGACGCTCTCC------ATCAAGAGCTGCGCC------------------------------AATGGAGCTCTTCCCAGCGAT---TCTTCGGCCTATGAAAATTGCCCGGGAAAGAACTCTAAGAGTACT------------ATCAACAAGCTAGAGTCCTTGCTCTATCCAGATAAAGTCGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCGTGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCGACATGCACCGGCTCCGGGCTGTACATCGACTCAATTATGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTAGGATGCGGTGGGTCTGGAAATATCCTCTGCTCTACTTGTGGAGGTCGGGGTCATCTC--------- Woodsia_scopulina_YJJY ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCCCACATGGTAGCCCTTGGAGGTTCCACAATC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCGCAACATCGC---TCATCGACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGTGAT---CCTTCGGCCTTCGAAAATTGTCCCGGAAAGAACTCAAAGAGTACT------------ATCAACAAGCTAGAGTCCTTGCTCTATCCAGATAAAGTCGTG------GCAGAGGAGAAGATTGAGAGGCCAGTAGGTTTG---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCGACATGCACTGGCTCAGGGCTGTACATCGACTCAATTATGGAATGTCAAGGCATAATGGTGAAAGTCAGATGCCTAGGATGCGGTGGGTCTGGAAATATCCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Zea_mays_GRMZM2G038801_T01 ---------------------------------------------------------------------------------------AGACTTGCGCGCGCCTCCGCTGCTGCGACTGCGAGCCCAAGAAAAATTTTCCTCTACGAGCGCATGGAGGTGTCCGCTGGGCTCCGGCTGCCGCCCGTCGCTGCGGCAGCGTCGCTCCTTGGCTGTCGG---------TCCGCGTCGGTGCCGCCGCGCGCGGCGGCTTCCCATTCTGTGCGGTCCGTGTCCCGCGCGGTTAAGATCAGAGCAGCTGCAATTAACGGCCTCCAAAGAAACAGAAGTAATCTC---------------------------------------------------------------------------------------------GAATCATTATTCTGCTACGACAAATCTGTC------CCCGAGCAGGACATTGGAGAACCATCTGGTCTA---AATCTGGAAAAGAAGAATGTCGGGGACAAGCCTCCCTGCTCAAGCTGTGAAGCTAAAGGTGCCTTGCTGTGTGCAACGTGCGCTGGTTCAGGCTTGTACGTCGACTCGATACTAGAGAGCCAGGGAATCATCGTGAAAGTCAGATGCCTAGGTTGCGGTGGAACTGGGAACATCATGTGCTCCAAATGTGGAGGCCGTGGGCATACA------TAA ; END; BEGIN TREES; Title Hsp40; LINK Taxa = Taxa; TRANSLATE 1 Adiantum_aleuticum_WCLG, 2 Adiantum_raddianum_BMJR, 3 Alsophila_spinulosa_GANB, 4 Anemia_tomentosa_CQPW, 5 Aquilegia_coerula_Aquca_00545.1, 6 Arabidopsis_thaliana_AT5G17840_gDNA, 7 Argyrochosma_nivea_XDDT, 8 Asplenium_nidus_PSKY, 9 Asplenium_platyneuron_KJZG, 10 Athyrium_filixfemina_URCP, 11 Athyrium_sp_AFPO, 12 Azolla_caroliniana_cf_CVEG, 13 Blechnum_spicant_VITX, 14 Botrypus_virginianus_BEGM, 15 Cedrus_libani_GGEA, 16 Cryptogramma_acrostichoides_WQML, 17 Culcita_macrocarpa_PNZO, 18 Cystopteris_fragilis_LHLE, 19 Cystopteris_protrusa_YOWV, 20 Cystopteris_reevesiana_RICC, 21 Cystopteris_sp_XXHP, 22 Cystopteris_utahensis_HNDZ, 23 Davallia_fejeensis_OQWW, 24 Dennstaedtia_davallioides_MTGC, 25 Deparia_lobatocrenata_FCHS, 26 Didymochlaena_truncatula_RFRB, 27 Diplazium_wichurae_UFJN, 28 Dipteris_conjugata_MEKP, 29 Encephalartos_barteri_GNQG, 30 Equisetum_diffusum_CAPN, 31 Equisetum_hyemale_JVSZ, 32 Gaga_arizonica_DCDT, 33 Gymnocarpium_dryopteris_HEGQ, 34 Homalosorus_pycnocarpos_OCZL, 35 Hymenophyllum_bivalve_QIAD, 36 Hymenophyllum_cupressiforme_TRPJ, 37 Illicium_parviflorum_ROAP, 38 Leucostegia_immersa_WGTU, 39 Lindsaea_linearis_NOKI, 40 Lindsaea_microphylla_YIXP, 41 Lygodium_japonicum_PBUU, 42 Myriopteris_rufa_GSXD, 43 Nephrolepis_exaltata_NWWI, 44 Notholaena_montieliae_YCKE, 45 Onoclea_sensibilis_HTFH, 46 Ophioglossum_petiolatum_WTJG, 47 Ophioglossum_sp_QHVS, 48 Osmunda_javanica_VIBO, 49 Parahemionitis_cordata_ZXJO, 50 Peperomia_fraseri_XSZI, 51 Phlebodium_pseudoaureum_ZQYU, 52 Phymatosorus_grossus_ORJE, 53 Pilularia_globulifera_KIIX, 54 Pityrogramma_trifoliata_UJTT, 55 Plagiogyria_japonica_UWOD, 56 Pleopeltis_polypodioides_UJWU, 57 Polypodium_amorphum_YLJA, 58 Polypodium_glycyrrhiza_CJNT, 59 Polypodium_hesperium_B_IXLH, 60 Polypodium_hesperium_GYFU, 61 Psilotum_nudum_QVMR, 62 Pteridium_aquilinum_Contig12715_13944, 63 Pteris_ensiformis_FLTD, 64 Pteris_vittata_POPJ, 65 Sceptridium_dissectum_EEAQ, 66 Thelypteris_acuminata_MROH, 67 Thyrsopteris_elegans_EWXK, 68 Tmesipteris_parva_ALVQ, 69 Vittaria_lineata_SKYV, 70 Woodsia_ilvensis_YQEC, 71 Woodsia_scopulina_YJJY, 72 Zea_mays_GRMZM2G038801_T01; TREE Hsp40_bestREP3 = (62:0.09434517,24:0.0732217,((((33:0.0276336,(22:0.02113066,((19:0.00595527,21:1.0E-8):0.00405765,(18:1.0E-8,20:1.0E-8):0.01385707):0.00292677):0.01508155):0.00445719,(((13:0.04789971,(((11:0.0029183,10:0.00585935):0.00295025,27:0.01176989):0.00591008,((45:0.02825151,(70:0.02151132,71:0.02101027):0.02148916):0.0041439,25:0.02845988):1.0E-8):1.0E-8):0.00591,34:0.02276222):0.00347334,(((9:0.04603823,8:0.07040234):0.07818435,((26:0.0483076,38:0.03712075):0.00457055,((((((60:1.0E-8,58:0.01099624):0.02170525,((57:1.0E-8,59:1.0E-8):0.01829246,56:0.03640874):0.00294066):0.00335132,51:0.02111271):1.0E-8,52:0.04606724):0.0453343,23:0.04667994):0.02870611,43:0.09786247):0.02622837):0.00797114):0.00404709,66:0.0477919):1.0E-8):0.00164996):0.04758495,((39:0.01135498,40:0.03269354):0.27349486,(12:0.52091775,((67:0.03626515,(3:0.07575026,(17:0.01845334,55:0.04058671):0.00859152):0.00708747):0.02529277,(53:0.4580212,(((36:0.03321098,35:0.01217113):0.1316066,((48:0.0462884,(((31:0.03194086,30:0.03737608):0.56818859,(29:0.21016777,(15:0.13103511,((37:0.0846254,50:0.31177199):0.05156355,(6:0.42663702,(72:0.40057061,5:0.22755005):0.06112349):0.10367351):0.20108352):0.0307299):0.28307553):0.04652254,((14:0.04260825,(65:0.01754258,(47:1.0E-8,46:1.0E-8):0.67095768):0.02734176):0.14618077,(61:0.11517044,68:0.06109417):0.26811645):0.11075622):0.15155819):0.0994746,28:0.14940565):0.00623791):0.04641834,(41:0.10365706,4:0.40789335):0.06093118):0.13493144):0.00212253):0.01449723):0.03728385):0.0754465):0.00689072,((((42:0.03137586,(7:0.06242097,(32:0.03749962,(49:0.12997729,44:0.0520172):0.00667909):0.04638476):0.01533138):0.01819484,((1:0.01763395,2:0.06206823):0.02449128,69:0.42483087):0.00791562):0.02059815,16:0.08119521):0.00809165,(64:0.05483769,(63:0.09467804,54:0.09184443):0.03529796):0.03664846):0.13478934):0.01179094); END; begin sets; charset exclude = 1 - 339 718 - 720; charset codonPos1 = 106 - 718 \ 3; charset codonPos2 = 107 - 719 \ 3; charset codonPos3 = 108 - 720 \ 3; end; begin mrbayes; set autoclose = no nowarn = yes; exclude 1 - 339 718 - 720; charset codonPos1 = 106 - 718 \ 3; charset codonPos2 = 107 - 719 \ 3; charset codonPos3 = 108 - 720 \ 3; partition currentPartition = 3 : codonPos1 , codonPos2 , codonPos3; set partition = currentPartition; lset applyto = ( 1 , 2 , 3 ); lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; mcmc; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 720; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 720; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 720; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1430009609537; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7460863349368479858; tell It; setDefaultOrder 57 5 16 9 2 3 61 41 28 53 0 10 56 4 17 59 39 29 68 46 63 23 36 32 14 45 50 30 18 6 26 11 22 35 43 49 47 58 33 65 38 20 34 64 24 60 42 55 71 62 70 37 27 51 54 52 67 7 25 21 44 8 15 40 12 31 13 1 48 69 66 19; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6534369860891704492; checksumv 0 2 3820871995 null getNumChars 720 numChars 720 getNumTaxa 72 numTaxa 72 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 696611.0 sumSquares 4.6116860184277115E18 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 716; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7460863349368479858 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1844.1430009566160.1598144321643565225; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 649; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((31:0.03194086,30:0.03737608):0.56818859,(((14:0.04260825,(65:0.01754258,(47:1.0E-8,46:1.0E-8):0.67095768):0.02734176):0.14618077,(61:0.11517044,68:0.06109417):0.26811645):0.11075622,(48:0.0462884,(28:0.14940565,((36:0.03321098,35:0.01217113):0.1316066,((41:0.10365706,4:0.40789335):0.06093118,(53:0.4580212,((67:0.03626515,(3:0.07575026,(17:0.01845334,55:0.04058671):0.00859152):0.00708747):0.02529277,(12:0.52091775,((39:0.01135498,40:0.03269354):0.27349486,(((33:0.0276336,(22:0.02113066,((19:0.00595527,21:1.0E-8):0.00405765,(18:1.0E-8,20:1.0E-8):0.01385707):0.00292677):0.01508155):0.00445719,(((13:0.04789971,(((11:0.0029183,10:0.00585935):0.00295025,27:0.01176989):0.00591008,((45:0.02825151,(70:0.02151132,71:0.02101027):0.02148916):0.0041439,25:0.02845988):1.0E-8):1.0E-8):0.00591,34:0.02276222):0.00347334,(((9:0.04603823,8:0.07040234):0.07818435,((26:0.0483076,38:0.03712075):0.00457055,((((((60:1.0E-8,58:0.01099624):0.02170525,((57:1.0E-8,59:1.0E-8):0.01829246,56:0.03640874):0.00294066):0.00335132,51:0.02111271):1.0E-8,52:0.04606724):0.0453343,23:0.04667994):0.02870611,43:0.09786247):0.02622837):0.00797114):0.00404709,66:0.0477919):1.0E-8):0.00164996):0.04758495,(((((42:0.03137586,(7:0.06242097,(32:0.03749962,(49:0.12997729,44:0.0520172):0.00667909):0.04638476):0.01533138):0.01819484,((1:0.01763395,2:0.06206823):0.02449128,69:0.42483087):0.00791562):0.02059815,16:0.08119521):0.00809165,(64:0.05483769,(63:0.09467804,54:0.09184443):0.03529796):0.03664846):0.13478934,(62:0.09434517,24:0.0732217):0.01179094):0.00689072):0.0754465):0.03728385):0.01449723):0.00212253):0.13493144):0.04641834):0.00623791):0.0994746):0.15155819):0.04652254):0.141537765,(29:0.21016777,(15:0.13103511,((37:0.0846254,50:0.31177199):0.05156355,(6:0.42663702,(72:0.40057061,5:0.22755005):0.06112349):0.10367351):0.20108352):0.0307299):0.141537765);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6534369860891704492 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 649; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; endTell; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;