#NEXUS [written Sat Apr 25 20:47:18 EDT 2015 by Mesquite version 2.75 (build 566) at Macintosh-99.local/10.0.1.3] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=52; TAXLABELS Adiantum_aleuticum_WCLG Adiantum_raddianum_BMJR Alsophila_spinulosa_GANB Asplenium_platyneuron_KJZG Athyrium_filixfemina_URCP Athyrium_sp_AFPO Blechnum_spicant_VITX Bolbitis_repanda_JBLI Cryptogramma_acrostichoides_WQML Culcita_macrocarpa_PNZO Cystopteris_fragilis_LHLE Cystopteris_protrusa_YOWV Cystopteris_reevesiana_RICC Cystopteris_sp_XXHP Cystopteris_utahensis_HNDZ Davallia_fejeensis_OQWW Dennstaedtia_davallioides_MTGC Deparia_lobatocrenata_FCHS Didymochlaena_truncatula_RFRB Diplazium_wichurae_UFJN Dipteris_conjugata_MEKP Equisetum_diffusum_CAPN Equisetum_hyemale_JVSZ Gaga_arizonica_DCDT Gymnocarpium_dryopteris_HEGQ Homalosorus_pycnocarpos_OCZL Leucostegia_immersa_WGTU Lindsaea_linearis_NOKI Lindsaea_microphylla_YIXP Lygodium_japonicum_PBUU Myriopteris_rufa_GSXD Nephrolepis_exaltata_NWWI Notholaena_montieliae_YCKE Onoclea_sensibilis_HTFH Phlebodium_pseudoaureum_ZQYU Phymatosorus_grossus_ORJE Pilularia_globulifera_KIIX Pityrogramma_trifoliata_UJTT Plagiogyria_japonica_UWOD Pleopeltis_polypodioides_UJWU Polypodium_amorphum_YLJA Polypodium_glycyrrhiza_CJNT Polypodium_hesperium_B_IXLH Polypodium_hesperium_GYFU Polystichum_acrostichoides_FQGQ Pteridium_aquilinum Pteris_ensiformis_FLTD Pteris_vittata_POPJ Thelypteris_acuminata_MROH Thyrsopteris_elegans_EWXK Woodsia_ilvensis_YQEC Woodsia_scopulina_YJJY ; END; BEGIN CHARACTERS; TITLE ApPEFP_B; DIMENSIONS NCHAR=1770; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Adiantum_aleuticum_WCLG --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCTTCTTAACTCTAAACTCTTTATCTGGCACGGTGACTCTTGGGTCCTCCTCGTAGATGCGATCGTTCACCCTTCTAATGAGGCTCTTAATGTGAAGGAAAGTAGTCCTGGCCTTCATGCTGCATCTGGGCCGAGGCTTGCTGAGGAATGTGCAAGTCTGGGTGGATGTAGAACTGGGATGGCACAAATAACTGGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGACGGGAGCAACAGTGGGAACGATCACGGAAACTGCATGCTGGTTGGTTGTGGTCAAAATGGACAGGTCAAGGT---CGTGCTGGCCATATAGATACC---------------TCCTTT---TACATGAGATACTTAGCAAGGGCAAAGGCTGTTGACCTTTCAAAAGCTGCCGAAATGAAGATATTGTATCCTGGTGGAGTTGATTCTGAGGGGC--CGAGTAATGGTTGTGGTTGGAGCACATTTTTTGTTGCGGTGCCTTGATTTGGAGCAGTTTCTTCTTTATGTTGTCAAGGAGTTTGAACCTTTGATGAAAGAAGGTTACATCATTGTGTATTTCCATTCTGCTGCAGCATTGAATTTTGTCCCAGATTCTGGATGGATGAAGCGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Adiantum_raddianum_BMJR ---------GAGAGGACAAGAACGAAGCACAGCAGCACGGTGGTGACGTTGGATCAGGTACCTGCTTGGGGCGATTTCAAAGTGTTTCCCGCACTT------------------------------------TCCTCGTTTGAAAGTGGGCTTGTG------CAAGGAGGGGCCGTTGCAGATCCCCTCCTCTTCCCATCTTCCCGC---CGCTCGCCTTCCAAGTTTCCTTGCGACCCTCTGCTTAACTCCAAACTCTTTATCTGGCATGGTGACTCTTGGTTTCTTTCAGTCGATGCGATTGTTAATCCTTCTAACGAGGCTCTTAATGTGAAGGAGAGTAGTCCTGGCCTTCTTTACGCATCTGGGCCGAGGCTTGCTGAGGAATGTGCAGGCCTGGGTGGCTGTAGAACTGGTATGGCACAAATAACTGGGGCTTATGACTTGCCTGCAAGAATGGTCATACACACTGTTGG----------------AAGTATTACACAGCTGCTGAAAATGCACTGAGTCGATGCTATCAAGCGTGTCTTGAGGTG---CTGATTGAACATGGTCTCCAAAGCATTGCGATGGGATGCATATATGAGGAGTCCAAGGGTTATCCTCGAGAACAGGCAGCAGATGTGGCCCTACGTACTTTGCGGCGTTGTCTGGATAAACACCATGAAAGAATCAGTGCGGTTGTTTTATGCCTTTCAACAGTTTTGGATTCAGAAATCTATGAAAAACTCTTACCCTACTACTTTCCTAGAAATAAAATAGAAGAGCGTAACGCTTTGCTGACTTTACCAGCACAAGTTGGTGATGAAAATGGAGAGACTGTCATAGATGAACGTAAGATCAGAATAAAAGAACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAATTCTCTCACGTCT---ACAAACACGATTGACCCTTTTATATCCAGCAGG---------------------------------------------------------CTTGAGGGATCTTTGCTCGATTCCTCTTTCCTTTGCATGACTGAAGATCCTGACGAAAGACGGGAGCAACAATGGGAAAGAGCACGTAAACCGCAAGCTGGTTGGTTGTGGTCAAAGTGGGCAGGTCAAGGT---CTTGCTGGCCATATAGATACC---------------TCCTTC---TACATGAGATACGTAGCAAGGGCGAAGGCTGTTGACCTTTCAAGTGCTGCAGAAATGAAGATTCTGTACCCTGGAGGTGTCGATCGTGAGGGACATCGGGTAATGGTTGTGGTCGGGGCACATTTTTTGCTGCGAGGCCTTGATATGGAGCAGTTTCTTCTCTATGTTGTCAGGGAATTTGAGCTTCTGATCAAAGAAAGTTACAGCATTGTGTATTTCCATTCTGTTGCCACATTGAATTTTGTCCCGGATCTCGGATGGATGAAGCGCATACACCACATCATGGGGCCCAGACATAAGGCAAATTTACATAAAATCTATATGGTTCACCCCACAGTTGGTTTGAAAGCAAGTGTACTGTTGTTGAGATTGGTTGCAGATTTGCAGGTGTGGGCAAAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Alsophila_spinulosa_GANB -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCGATGCCTTGATTTGGAGCAGTTCCTTCTTTATGTTGTCAAGGAATTTGAACCTTTGATTAACAAAACCTTTAGTGTCGTCTATTTTCACTCTGCGGCAGCACTGCAATTTGTTCCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Asplenium_platyneuron_KJZG TATGAAGGGAGGGTGATGGAGTCGAAGGGGAGCAACAACGCGGTGACGCTGGATCAGGTTTCCGCTTGGAGCGACTTGGAGTTGTTTCCGACGCCC------------------------------------TTGAATGGGCAAGCAGCACCA---GATGATGGAGGAGGGCGCTTTGCAGATCCTCTCATCGCTCCTTCTGCG------TCGTCACCTTCCAAATTCCCCTGCGTGCCTCTGCTTAACTCCAAGCTCTTCCTGTGGTATGGCGACCCTTGGGTCCTTGCTGTAGACGCAGTTGTCAACTCTTCCAACGAGACGCTTGATGTAAAGGAAAGTAGCCCCGGGCTGCATGCGGCATCGGGGCCTGGGCTTGCCCAAGAGTGTGCAGGTCTGGGTGGATGTAGGACAGGAACGGCTCAAATAACGGGGGCCTATGAACTACCTGCAAGGAGAGTTATACACACAGTTGGACCCAAGTATGTAGAGAAGTATCAAACAGCTGTCGAAAATGCTTTGAGTCGATGCTATCAGTCATGCCTTGAGCTGCTTTTAATCGATAATGGTTTTCAAAGTATTGCGCTTGGATGTATCGACAGAGAGTCTAAAGAATATCCACGTGAACAAGCCGCACATGTTGCCTTACGTACAGTGCGGCACTTCCTAGAAAAGCACAGTGACAGACTTAAGGCTGTGGTTCTATGCTTGTCATCGTACG--GATATAGAGATCTATGAAAAACTCTTACTCCTGTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTCAGCGATGAACATGGCGTGACAATAATGGATGAGCGTAAGATCAGAATAAAAGCACTCCCTGTTGTTTCTGACTCAGATGCTGAGCCTAAATCCCCTTTATCC---------------------------------AGGATTGGC---------------------------------------------------TCCCAGAAATCGTCGCTGGATTCTTCCTTTCTTGTCATGACTGAAGATCCGGATCGGAGGCGCGAAGAGCAGTGGCAAAGAGCTGGGAAGGTGCATGCTGGTTGGTTTTGGTCAAGGTGGCTAGGTCATGCTAGGCGTGTGGATGGATTGGATGTG---------------TCATTCCCCCACAACAGATATGTAGCTAGGGCAAAGGCAGTGGACCTGTCCAAAGCTGCTGAAATGAAAATTTTGTATCATGGTGGAAGCGACGCAGAGGGACATCCCATAATGGTTGTAATTGGCGCCCATTTCTTACTTCGATGTCTTGATTTGGAACAGTTCCTTTTATATGTTGTGAAAGAGTTTGAACCTTTG--------------------------TTTTCATTCTGCAGCATCATTAAATTTTGTTCCAGATACGCAGTGGGTGAAGCAAATACACCATGTCATGGGGCCAAGGCATAAGGTCAATCTACGTAGGCTCTACATGGTACACCCTACCTTGGGTTTAAAGGCTAGTGTGTTGTTATTGAAGTTATTTGCGGATGCACAGGTTTGGGCAAAGGTGGCATACATGGACAGGTTATCCGATTTGTTT---AGATACATACCGCGGGATCAGCTAACTATT------CCT-----TGTTCTCCAGCATGACATGGATTTGCATGGAAGTTCT---TAG????????????????????????????????????????????????????????? Athyrium_filixfemina_URCP TGATGAAATAGGATGATGAGGACGAAGCGGAGCAACAGCGCGGTGACGTTGGATCAGGTACCCGCTTGGAGCGACTTGGAGGTTTTTCCCACGCCC----------------------------------------------------------TTAGCAGCACTTGCTGGCCCTTTGCAGACCCTCTCATCTCTCCCTCCATT------TCCTCCCCTTCCAAATTCCCCTGCCTCCCCCTTCTCAACTCCAAGCTCTTCCTCTGGCGCGGCGACCCTTGGCTCCTCACTGTCGATGCAGTTGTCAACTCTTCTAATGAGACTCTTGATGTGAAGGAAAGTAGCCCTGGGCTCCATGCGGCATCCGGGCCTAGGCTTGCTGAGGAATGTGCAGGTCTGGGTGGATGTAGAACGGGGATGGCTCAAATAACTGGGGCCTATGAATTGCCTTCAAGGAGGGTTATACACACTGTTGGACCAAAATATGTAGAAAAGTATCATACAGCTGCTGAAAATGCTTTGAGTCGCTGCTATCAGTCATGCCTTGAGCTC---CTAATTGAAAATGACCTTCAAAGTATTGCGCTTGGATGCATCTACACAGAGTCTAAAGAATATCCGCGTGAACAGGCAGCACATGTTGCCTTACGTACTTTGCGGCGCTTCTTGGAGAAACACAAGGACAGAATTAATGCAGTGGTTTTATGCTTTTCAGCAGATATGGATATAGAAATATATGAAAAACTGTTACTCCTGTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAAAATGGAGAGACTATCATAGATGAGCGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAAATCCGCAATATCC---ACGAACACAGTTCATGAATTTACATCCAGCAGGATCAGC---------------------------------------------------TCCAAGGGATCTTCGCTCGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGGCACATGCTGGTTGGTTTTGGTCAAAATGGTTAGGTCAA------------AATGGATTGGACACC---------------TCATTC---CACAACAGATATTTAGCAAGGGCAAAGGCAGTTGACCTATCCGAAGCTGCGGAAATGAAAATTTTGTATCATGGTGGAGTTGACTGTGAGGGGCATCGAGTAATGGTTGTAATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTATACGTTGTGAAGGAGTTTGAACCTTTGATTAAAGAACCTTACAGTGTTGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCATATACACCAAATCATGGGACCAAGGCATAAGGCCAATTTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTTACTTGCAGACTCACAGGTTTGGGCAAAGGTGGCATATATGGACAGGTTATCTGATTTGTTT---AGATACGTACCACAAGATCAGCTAACAATC------CCGGATTTTGTTTTCCAGCATGACATGGATGTGCATGGTGGTTCTCAGTAG????????????????????????????????????????????????????????? Athyrium_sp_AFPO ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCTCCATGCGGCATCCGGGCCTAGGCTTGCTGAGGAATGTGCAGGTCTGGGTGGATGTAGAACGGGGATGGCTCAAATAACTGGGGCCTATGAATTGCCTTCAAGGAGGGTTATACACACTGTTGGACCAAAATATGTAGAAAAGTATCATACAGCTGCTGAAAAT????????????????????????????????????---???????????????????????????????????????????????????????????????????????????????????????????????????????????????TTGGAGAAACACAAGGACAGAATTAATGCAGTGGTTTTATGCTTTTCAGCAGATATGGATATAGAAATATATGAAAAACTATTACTCCTGTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAAAATGGAGAGACTATCATAGATGAGCGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAAATCCGCAATATCC---ACGAACACAGTTCATGAATTTACATCCAGC?????????---------------------------------------------------??????????????????GATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGGCACATGCTGGTTGGTTTTGGTCAAAATGGTTAGGTCAA------------AATGGATTGGACACC---------------TCATTC---CACAACAGATATTTAGCAAGGGCAAAGGCAGTTGACCTATCCGAAGCTGCGGAAATGAAAATTTTGTATCATGGTGGAGTTGACTGTGAGGGGCATCGAGTAATGGTTGTAATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTATACGTTGTGAAGGAGTTTGAACCTTTGATTAAAGAACCTTACAGTGTTGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCATATACACCAAATCATGGGACCAAGGCATAAGGCCAATTTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTTACTTGCAGACTCACAGGTTTGGGCAAAGGTGGTATATATGGACAGGTTATCTGATTTGTTT---AGATACATACCACAAGATCAGCTAACAATC------CCGGATTTTGTTTTCCAGCATGACATGGATGTGGATGGTGGTTCTCAG------------------------------------------------------------ Blechnum_spicant_VITX -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCCTCTCATCTCTCCCTCCACT------TCCTCCCCTTCCAAATTCCCCTGCCTCCCCCTTCTCAACTCCAAGCTCTTCGTGTGGCGCGGCGACCCTTGGCTCCTCGCTGTCGATGCAGTTGTCAACACTTCTAATGAGACTCTTGATGTGAAGGAAAGTAGCCCTGGGCTGCATGCGGCATCCGGGCCTAGGCTTGCTGAGGAGTGTGCAGGTCTGGGTGGATGTAGAACGGGGATGGCTCAAATAACTGGGGCCTATGAATTGCCTTCAAGGAGGGTCATACACACTGTTGGACCAAAATACGTAGAAAAGTATCGTACTGCTGCTGAAAATGCTTTGAGTCGCTGCTATCAGTCATGTCTTGAGCTC---CTAATTGAAAATGGCCTTCAAAGTATTGCGCTCGGATGCATCTACACAGAGGCTAAAGAATATCCGCGTGAACAAGCAGCACATGTTGCCTTACGTACGTTGCGACGCTTCTTGGAGAAACACAAGGACAGAATTAACGCAGTGGTTTTATGCTTTTCAGCAGATATGGATATAGAAATATATGAAAAACTATTACTCCTGTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAAAATGGAGAGACTTTCATAGATGAGCGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAAATCCCCTATATCC---ACGCACACAGCTCATGAATCTACGTCCAGCAGAATCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAGTTTGAACCTTTGATTAAAGAACCTTATAGTGTTGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCATATACACCAAATCATGGGACCAAGGCATAAGGCTAATTTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTCTTGCTTAGGCTACTTGCAGACTCACAGGTTTGGGCAAAGGTGGCATATATCGACAAGTTATCTGATTTGTTT---AGATACGTACCACAAGATCAGTTAACAATC------CCGGATTTTGTTTTCCAGCATGACATGGATGTGCATGGTGGTTCTCAGTAG--------------------------------------------------------- Bolbitis_repanda_JBLI ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAATATGTAGAAAAGTATCGTACAGCTGCTGAAAATGCTTTGAGCCGTTGCTATCAATCATGCCTTGAGCTG---CTAATTGAAAATGGCCTTCGAAGTATTGCTCTTGGATGCATCTACACAGAGTCTAAAGAATATCCACGTGAACAAGCGGCACATGTTGCCTTACGTACATTGCGGCGCTTCTTGGAGAGACACACAGACAGA---------------------------------ATGGATATAAAAATATATGAAAGACTATTACTCCTGTACTTTCCTAGAAATATAATAGAAGAGCATAATGCGTTGCTGAATTTACCAGCAGATGTTGGTGATGAAAATGGAGAGGCTATAATAGATGAACGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGTAGATGCAGAGCTAAAATCCCCCATATCTTCCATAAACTCAGTTCATGAATTTACATCCAGCAGG---------------------------------------------------------TCTGAAGAATCTTTGCTTGATTCTACATTTCTCATCATGACCGAAGATCCAGATCAAAGGCGTGAAGAGCATTGGAAAACAGCAG?------------------?GTTTGGTCAAAATTACTAGGACATGAGAATCGTGCCAATGGATTGGATACC---------------TCATTC---CACCACAGATATCTAGCCAGGGCGC--------------------------------------------------------------------------------------------------------------------------------------------GTTGTGAAGGAGTTTGAACCTTTGATTAAAGGACCTTACAGTGTTGTGTATTTTCATTCTGCCACAACATTACATTTTGTTCCAGATACCCAATGGGTGAAGCGTATACACGAAATTATGGGACTGAGACATAAGGTTAATCTACATAAACTCTACATGGTACACCCCACGTTGGGTTTGAAAGCTAGTGTACTGTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Cryptogramma_acrostichoides_WQML AAAAAAGAGAATATGGAGAGGACGAAGCAGAGCAACAGCCTGGTGACGCTGGATCAGGTACCTGCTTGGAGTGACTTGGAGGTGTTTCCCACGCCT------------------------------------CCCTACCTTGAGAGTGGT---TCG------CAAGGAGGGGCCTTTGCAGACCCCCTCCTCTCGCCCTCCTGTCCCTTCCCCACCCCTTCTACGTTCCCTTGCGACCCCCTCCTTACCTCCAAAATCTTCATTTGGAATGGTGACCCTTGGGTCCTCCTCGTCGATGCCGTTGTGAACTCTTCTGATGAGGCACTTAATGTGAAGGGCAGTAGCCCTGGCCTACATGCTGCAGCTGGGTCCAGGCTTGCTGAGGAATGCGCGGGCCTGGGTGGATGTAGAACTGGGATGGCACGAATAACTGGGGCCTATGATTTACCTGCAAGAAGGGTCATACATACTGTTGGACCAAAATATGTAGAAAAGTACCATACAGCTGCTGAAAATGCTTTGATGCGCTGCTATCAATCATGTTTTGAGCTG---CTGATTGAGCACGGACTTCAAAGTATGGCGGTTGGTTGCATTTGTAAGGAGTCCAAGGGTTATCCTCCTGAACAGGCAGCACATGTGGCCCTACGTACATTACGGCGTTTCTTGGATAAACACAATGACAGAGTCAATGCAGTGGTTTTATGCTTTTCAGCAGCTTCGGATTTAGAAATCTATGAAAAACTATTACTCTTCTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCTTTGCTGACTTTACCAGCAAGTGTTGGTGGTGAAAGTGGAGAGACTCTCATAGATGAACGTAAGATCAGAATAAAAGAACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAAATCCCCCATGCCC---ATGATTACACTTGACGGTCCCACACCCAGCAGG---------------------------------------------------------CTCAAGGGATCTTCGCTCGATTCTTCTTTTCTTTGCATGATTGAAGATCCTGATGAAAGACGCGAGCAACAATGGGAAAGAGCACGTAAGCCACATGCTGGTTGGATGTGGTCAAAGTGGACAGGTCAAGGT---CTTGCTGGCCGTATAGACACC---------------TCCTTT---TACTTCAGATACTTAGCAAGGGCAAAGGCTGTTGACCTTTCAAAAGCTGCCGAAATGAAGATATTGTATCATGGTGGAGTTGATTATGAGGGGCATCGAGTAATGGTTGTGGTTGGGGCACATTTTTTGTTGCGATGTCTTGATTTGGAGCAGTTTCTTCTTTACGTTGTCAAGGAATTTGAAACTTTGGTCAAAGAAGGTTACAGCATTGTGTATTTTCATTCAGCTGCAGCATTGCATTTTGTCCCGGATATTGGTTGGGTGAAGCGGATACACCACATCATGGGACCCAGACATAAGGAAAACTTACATAGAATATACATGGTACACCCCACCTTGGGTTTAAAAGCTAGTGTATTGCTTCTGAGATTACTTGCAGATTCACAGGTATGGGCGAAGGTGGCATATGTGGACCGTCTCTCAGATATGTTT---CGATATGTACCTCAAGACCAACTAACAATA------CCGGAGTTTGTTCTCCAGCATGACATGGAGCTGCATGGTGGTTCTGCTTAG--------------------------------------------------------- Culcita_macrocarpa_PNZO ATGGAGTCTCCAACAACAACAACGAAGAGGGGCAACAGCGAGGTGGCGCTTGACCAGGTGCCTGCGTGGAGCGATTTGGAAGTGTATCCCACGCCG------------------------------------CCGCACATTCTCGCACGCGCAGGCGAAGGTGGGGTGGGGCCCTTCGCTGACCCCCTCATCTCACCTACACACCCC---TCCTTGCCTGCCAAGTTCCCCATAGACCACCACCTTAACTCCAAGCTCTACCTCTGGCGAGGGGACCCTTGGAACCTCCACGTCGACGCGGTCGTCAACTCTTCCAATGAGACACTTGATGTCAAGGAAAGTAGCCCAGGGTTACACGCTGTAGCTGGGCCCAGGCTTGCCGAGGAATGTGCGGGTTTGGGTGGATGTAGAACTGGGATGGCAGAAATCACAGGCGCTCATGAGTTACCTGCAAGGAGGGTTATACATACGGTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATACGATCCAGCCAGTTACGTCAAGCAGCTTGAGCAG---GGTTGGC-----------------------------------------------------------------------------------TCTGAAGAATCTTCATTGGATTCCTCTTTTCTCTTAATGACTGAAGACCCCGATCGGAAACGGGAAGAGCAATGGGAAAGGGCTGCAAAGGTGCAAACTGGTTGGTCCTGGTCGAAATGGATAGGTTATGGGAATCATGGTGGCGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACACTCCATGGATGAAGCGTATACACCAGATCATGGGACCTAAACATAAGGCTAATTTACATAGAATTTATATGGTACACCCCACTCTGGGTTTGAAATCCAGTGTACTCTTACTGAGGATATTTGTGGACTCAGAGGTTTGGGCAAAGGTGGCATATGTGGACAAGCTGCCTGACTTATTC---AAATATGTTTCGCGAGATCAGCTAACAATC------CCGGACTTCATTATCCAGCATGATGTGGATATGCACGGCAGTCCTCACCAGCACTTA??????????????????????????????????????????????????? Cystopteris_fragilis_LHLE AGGATGATGGAGTCGAAGAGGACGAAGCAGAGCAACAGCGCGGTGACGTTGGATCAGGTACCCGCTTGGAGCGACTTGGAGGTGTTTCCCACGCCC------------------------------------TTGATTGACAAAGCAGCAGTAGCTGATGATGGAGGAGAGCGTTTTGCAGACCCTCTCATCTCTCCCTCCTCT------TCCTCCCCTTCCAAATTCCCCTGCCTCCCCCTCCTCAACTCCAAGATCTTCCTGTGGCGCGGCGACCCTTGGACCCTCACTGTCGATGCAGTTGTCAACTCTTCTAATGAGACTCTTGATGTGAAGGAAAGTAGCCCTGGGCTGCATGCGGCATCTGGGCCTAGGCTTGCTGAGGAATGTGCAGGTCTGGGTGGATGTAGAACAGGGATGGCTCAAATAACTGGGGCCTATGAATTGCCTTCAAGGAGGGTTATACACACTGTTGGACCAAAATATGTAGAAAAGTATCATACAGCTGCTGAAAATGCTTTGAGTCGCTGCTATCTGTCATGCCTTGAGCTC---CTAATCGAAAATGGCCTTCAAAGTATCGCGTTTGGATGCATCTACACAAAGTCTAAAGAATATCCGCGTGAACAAGCAGCACATGTCGCCTTACGTACTTTGCGGCGCTTCTTGGAGAAACACAAGGACAGA------------------------------------------------------AGACTATTACTCCTGTACTTTCCTAGAAATATAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAAAATGGAGAGACTATCATAGACGAACGTAAGATCAGAATAAAAGCAGTTCCGGTTGTTTCTGATGCAGATGCTGAACCAAAGTCCCCTATATCC-----------------------------------AGTCAGC---------------------------------------------------TCCAAGGGATCTTCGCTCGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGCTGCATCCTGGTTGGTTTTGGTCAAAATGGCTAGGTCATGAGAGTCGTGCCGATGGATTGGATACC---------------TCATTC---CACAACAGATATTTAGCAAGGGCAAAGGCAGTTGACCTATCCGAAGCTGCAGAAATGAAAATTTTGTATCATGGTGGAGTTGACTGCGATGGGCATCGAGTAATGGTTGTCATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTTGAACCTTTGATTAAAGAACCTTACAGTGTGGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCAAATACACCAAATCATGGGACCAAGACATAAGGCTAATTTACGTAGACTCTATATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGCTACTTGCAGACTCACAGGTTTGGGCAAAGGTGGCATATATGGACAGGTTATCTGATTTGTTT---AGATACGTGCCGCAAGATCAGCTAACAATC------CCCGATTTTATTTTCCAGCATGATAGGGATGTGCATGGTGGTTCTCCGTAG????????????????????????????????????????????????????????? Cystopteris_protrusa_YOWV ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGTATCATACAGCTGCTGAAAATGCTTTGAGTCGCTGCTATCTGTCATGCCTTGAGCTC---CTAATCGAAAATGGCCTTCAAAGTATCGCGTTCGGATGCATCTACACAGAGTCTAAAGAATATCCGCGTGAACAAGCAGCACATGTTGCCTTACGTACTTTGCGGCGCTTCTTGGAGAAACACAAGGACAGAATTAATGCAGTGGTTTTATGTTTTTCAGCGGAGATGGATATAGAAATATATGAAAAACTATTACTCCTGTACTTTCCTAGAAATATAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAAAATGGAGAGACTATCATAGATGAACGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGCAGATGCTGAACCAAAATCCCCTATATCC---ACAGACACAGTTCAGGCATTTACATCCAGCAGGGTCAGC---------------------------------------------------TCCAAGGGATCTTCGCTCGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGCTGCATCCTGGTTGGTTTTGGTCAAAATGGCTAGGTCATGAGAGTCGTGCCGATGGATTGGATACC---------------TCATTC---CACAACAGATATTTAGCAAGGGC-------------------------------------------------------GTTGACTGCGAGGGGCATCGAGTAATGGTTGTCATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTTGAACCTTTGATTAAAGAACCTTACAGTGTGGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCAAATACACCAAATCATGGGGCCAAGACATAAGGCTAATTTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTTACTTGCAGACTCACAGGTTTGGGCAAAGGTCGCATATATGGATAGGTTATCTGATTTGTTT---AGATACGTGCCGCAAGATCAGCTAACAATC------CCCGATTTTATTTTCCAGCATGACACGGATGTGCATGGTGGTTCTCAGTAG????????????????????????????????????????????????????????? Cystopteris_reevesiana_RICC AGGATGATGGAGTCGAAGAGGACGAAGCAGAGCAACAGCGCGGTGACGTTGGATCAGGTACCCGCTTGGAGCGACTTGGAGGTGTTTCCCACGCCC------------------------------------TTGATTGACAAAGCAGCAGTAGCTGATGATGGAGGAGAGCGTTTTGCAGACCCTCTCATCTCTCCCTCCTCT------TCCTCCCCTTCCAAATTCCCCTCCCTCCCCCTCCTCAACTCCAAGCTCTTCGTGTGGCGCGGCGACCCTTGGATCCTCACTGTCGATGCAGTTGTCAACTCTTCTAATGAGACTCTTGATGTGAAGGAAAGTAGCCCTGGGCTGCATGCGGCATCTGGGCCTAGGCTTGCTGAGGAATGGGCAGGTCTGGGTGGATGTAGAACAGGGATGGCTCAAATAACTGGGGCCTATGAATTGCCTTCAAGGAGGGTTATACACACTGTTGGACCAAAATATGTAGAAAAGTATCATACAGCTGCTGAAAATGCTTTGAGTCGCTGCTATCTGTCATGCCTTGAGCTC---CTAATCGAAAATGGCCTTCAAAGTATCGCGTTTGGATGCATCTACACAGAGTCTAAAGAATATCCGCGTGAACAAGCAGCACATGTCGCCTTACGTACTTTGCGGCGCTTCTTGGAGAAACACAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGACACAGTTCAGGCATTTACATCCAGCAGGGTCAGC---------------------------------------------------TCCAAGGGATCTTCGCTCGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGCTGCATCCTGGTTGGTTTTGGTCAAAATGGCTAGGTCATGAGAGTCGTGCCGATGGATTGGATACC---------------TCATTC---CACAACAGATATTTAGCAAGGGCAAAGGCAGTTGACCTATCCGAAGCTGCAGAAATGAAAATTTTGTATCATGGTGGAGTTGACTGCGAGGGGCATCGAGTAATGGTTGTCATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTTGAACCTTTGATCAAAGAACCTTACAGTGTGGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCAAATACACCAAATCATGGGACCAAGACATAAGGCTAATTTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTTACTTGCAGACTCACAGGTTTGGGCAAAGGTGGCATATATGGACAGGTTATCTGATTTGTTT---AGATGCGTGCCGCAAGATCAGCTAACAATC------CCCGATTTTAT------------------------------------------------------------------------------------------------- Cystopteris_sp_XXHP AGGATGATGGAGTCGAAGAGGACGAAGCAGAGCAACAGCGCGGTGACGTTGGATCAGGTACCCGCTTGGAGCGACTTGGAGGTGTTTCCCACGCCC------------------------------------TTGATTGACAAAGCAGCAGTAGCTGATGATGGAGGAGAGCGTTTTGCAGACCCTCTCATCTCTCCCTCCTCT------TCCTCCCCTTCCAAATTCCCCTGCCTCCCCCTTCTCAACTCCAAGCTCTTCCTGTGGCGCGGCGACCCTTGGATCCTCACTGTCGATGCAGTTGTCAACTCTTCTAATGAGACTCTTGATGTGAAG---------CCTGGGCTGCATGCAGCATCTGGGCCTAGGCTTGCTGAGGAATGTGCAGGTCTGGGTGGATGTAGAACAGGGATGGCTCAAATAACTGGGGCCTATGAATTGCCTTCAAGGAGGGTTATACACACTGTTGGACCAAAATATGTAGAAAAGTATCATACAGCTGCTGAAAATGCTTTGAGTCGCTGCTATCTGTCATGCCTTGAGCTC---CTAATCGAAAATGGCCTTCAAAGTATCGCGCTTGGATGCATCTACACAGAGTCTAAAGAATATCCGCGTGAACAAGCAGCACATGTTGCCTTACGTACTTTGCGGCGCTTCTTGGAGAAACACAAGGACAGAATTAATGCAGTGGTTTTATGTTTTTCAGCGGAGATGGATATAGAAATATATGAAAAACTATTACTCCTGTACTTTCCTAGAAATATAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAAAATGGAGAGACTATCATAGATGAACGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGCAGATGCTGAACCAAAATCCCCTATATCC---ACAGACACAGTTCAGGCATTTACATCCAGCAGGGTCAGC---------------------------------------------------TCCAAGGGATCTTCGCTCGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGCTGCATCCTGGTTGGTTTTGGTCAAAATGGCTAGGTCATGAGAGTCGTGCCGATGGATTGGATACC---------------TCATTC---CACAACAGATATTTAGCAAGGGCAAAGGCAGTTGACCTATCCGAAGCTGCAGAAATGAAAATTTTGTATCATGGTGGAGTTGACTGCGAGGGGCATCGAGTAATGGTTGTCATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTTGAACCTTTGATTAAAGAACCTTACAGTGTGGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCAAATACACCAAATCATGGGACCAAGACATAAGGCTAATTTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTTACTTGCAGACTCACAGGTTTGGGCAAAGGTCGCATATATGGACAGGTTATCTGATTTGTTT---AGATACGTGCCGCAAGATCAGCTAACAATC------CCCGATTTTATTTTCCAGCATGACACGGATGTGCATGGTGGTTCTCAGTAG--------------------------------------------------------- Cystopteris_utahensis_HNDZ AGGATGATGGAGTCGAAGAGGACGAAGCAGAGCAACAGCGCGGTGACGTTGGATCAGGTACCCGCTTGGAGCGACTTGGAGGTGTTTCCCACGCCC------------------------------------TTGATTGACAAAGCAGCAGTAGCTGATGATGGAGGAGAGCGTTTTGCAGACCCTCTCATCTCTCCCTCCTCT------TCCTCCCCTTCCAAATTCCCCTGCCTCCCCCTCCTCAACTCCAAGCTCTTCCTGTGGCGCGGCGACCCTTGGATCCTCACTGTCGATGCAGTTGTCAACTCTTCTAATGAGACTCTTGATGTGAAGGAAAGTAGCCCTGGGCTGCATGCGGCATCTGGGCCTAGGCTTGCTGAGGAATGTGCAGGTCTGGGTGGATGTAGAACAGGGATGGCTCAAATAACTGGGGCCTATGAATTGCCTTCAAGGAGGGTTATACACACTGTTGGACCAAAATATGTAGAAAAGTATCATACAGCTGCTGAAAATGCTTTGAGTCGCTGCTATCTGTCATGCCTCGAGCTC---CTAATCGAAAATGACCTTCAAAGTATCGCGCTTGGATGCATCTACACAGAGTCTAAAGAATATCCGCGTGAACAAGCAGCACATGTCGCCTTACGTACTTTGCGGCGCT---------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGGTGATGAAAATGGAGAGACTATCATAGATGAACGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGCAGATGCTGAACCAAAATCCCCTATATCC---ACG---------------TTTACATCCAGCAGGGTCAGC---------------------------------------------------TCCAAGGGATCTTCGCTCGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGCTGCATCCTGGTTGGTTTTGGTCAAAATGGCTAGGTCATGAGAGTCGAGCCGATGGATTGGATACC---------------TCATTC---CACAACAGATATTTAGCAAGGGCAAAGGCAGTTGACCTATCCGAAGCTGCAGACATGAAAATTTTGTATCATGGTGGAGTTGACTGCGAGGGGCATCGAGTAATGGTTGTCATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTTGAACCTTTGATCAAAGAACCTTACAGTGTGGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCAAATACACCAAATCATGGGACCAAGACATAAGGCTAATTTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTTACTTGCAGACTCACAGGTTTGGGCAAAGGTGGCATATATGGACAGGTTATCTGATTTGTTT---AGATACGTGCCACAAGATCAGCTAACAATCACAATCCCCGATTTTATTTTCCAGCATGACACGGATGTGCATGGTGGTTCTCAGTAG????????????????????????????????????????????????????????? Davallia_fejeensis_OQWW ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTTGAGCCGATGCTATCAGTCATGCCTTGAGCTG---CTGGTTGAAAATGGCCTTCAAAGTATTGCTCTTGGATGCATCTACACACAGGCTAAAGAATATCCACGGGAACAAGCAGCACATGTTGCCTTACGTACTTTGCGACGCTTCTTGGAGAAACACAAGGACAAAATTCATGCAGTTGTTTTATGCTTGTCAGAAGATATG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????---???????????????????????????????????????---------------------------------------------------?????????????????????????????????????????????????????????????????????????????????????????????CACGCTGGTTGGTCTTGGCCAAAGTGGCCAGGTCATGAGAACCATGCCGATGGATTGGATACC---------------TCTTTC---CACCACAGATACTTGGCAAGGGCAAAGGCAGCTGACCTATCAGAAGCTGCAGAAATGAAAATCTTGCATCATGGTGGAGTGGACTGTGAGGGGCATCGTGTAATGGTTGTAATTGGGGCACATTTCTTGCTGCGATGCCTTGATTTGGAGCGGTTCCTTTTATACGTTGTGAAGGAATTTGAACCCTTGATAAAAGAACCCTACAGTGTTGTGTATTTTCATTCTGCCGCAGCGTTAAATTTTCTTCCAGATACGCAATGGGTGAAGCATTTACACCAAGTTATGGGACCAAGACATAAAGCTAATCTACAAAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTATTACTGAGGTTACTTGTAGACTCTCAGGTTTGGGCTAAGGTGACATATATTGACAGGTTATCAGATTTGTAT---AGATATGTACGACAAGATCAGCTCATGGTC------CCCGATTTTGTTTTCCAGCATGACATGGATATGCATGGTGGATCTCAG------------------------------------------------------------ Dennstaedtia_davallioides_MTGC -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTTTTCTTTTCATGACTGAAGATCCAGATAGGAGACGGGAAGAGCAGTGGGAAAAAGCC----------------------------------------------------TTGCTGGTGGCTTAGATACC---------------TCACTT---CACCATAGGTATTTAGCAAGGGCAAAGGCGGCTGACCTATCAGAAACTGCGGAAATGAAGATACTGTATTGTGGTGGAGTTGACTGCGAGGGGCATCGAGTAATGGTTGTTGTTGGAGCACATTTTTTACTGCGATGCCTTGATTTGGAGCAGTTCCTTCTTTATGTTGTGAAGGAGTTCGAACCTTTGATTAAAGAACCCCACAGCATTGTGTATTTTCATTCTGCGGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAGGCGTATACACGAAATCATGGGACCCAAACATAAGGCTAACTTACATAAAATCTACATGGTGCACCCCACCTTGGGTTTGAAAGCTAATGTAATGTTACTGAGGTTGCTTGTAGACTCGCAGGTTTGGGCAAAGGTAGCATATTTGGACAGCTTATCTGATTTGTTTGTTAGATACGTACCACGGGATCAGCTAACAATT------CCCGAATTTGTTTTCCAGCATGACAGGGACTTGCATGTTGGTCCTCAATAG????????????????????????????????????????????????????????? Deparia_lobatocrenata_FCHS AGGATGATGGAGTCGACGAGGACGAAGCGGAGCAACAGCGCGGTGACGTTGGATCAGGTACCCGCTTGGAGCGACTTGGAGGTGTTTCCCACGCCC------------------------------------TTGA---------------??GGGCAAGCAGCAGCAGGGCCCTTTGCAGACCCTCTCATCTCTCCCTCCACT------TCCTGCCCTTCCAAATTCCCCTGCCTCCCCCTTCTCAACTCCAAGCTCTTCCTGTGGCGTGGCGACCCTTGGCTCCTCACTGTCGATGCAGTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGGACCAAAATATGTAGAAAAGTATCATACAGCTGCTGAAAATGCTTTGAGTCGCTGCTA???????????????????---????????????????????????---GCGCTTGGATGCATCTACACAGAGTCTAAAGAATATCCGCGTGAACAAGCAGCACATGTTGCCTTACGTACTTTGCGGCGCTTCTTGGAGAAGCACAAGGACAGAATTAATGCAGTGGTTTTATGCTTTTCAGCAGATATGGATATAGAAATATATGAAAAA---------------------------------------------------------------------------------------GAGACTATCATAGATGAACGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGAGGCAGATGCTGAGCCAAAATCCCCTATATCC---ACTCACGCAGTTCACGCATTTACATCCAGCAGT---------------------------------------------------------TCCAAGGGATCTTCGCTGGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGGTGCATGCTGGTTGGTTTTGGTCAAAATGGCTAGGCCATGAGAGTCATGCCAATGGATTGGACACC---------------TCATTC---CACAACAGATATTTAGCAAGGGCAAAGGCAGTTGATCTATCCGAAGCTGCGGAAATGAAAATTTTGTATCATGGTGGAGTTGACTGCGAGGGGCATCGAGTAATGGTTGTAATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTCG????--------------------??GTTGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCATGTGCACCAAATCATGGGACCAAGGCATAAGGCTAATTTACGTAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTTACTTGCAGACTCACAGGTTTGGACAAAGGTGGCATATATGGACAGGTTATCTGATTTGTTT---AGATACGTACCACAAGATCAGCTAACAATC------CCGGATTTTGTTTTCCAGCATGACATGGATGTGCATGGTGGTTCTCAGTAG--------------------------------------------------------- Didymochlaena_truncatula_RFRB ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGCTGGTTGGTTTTGGTCTAAATGGCTGGGTCATGAGAGGCATGCCGATGGATTGGATACC---------------TCATTC---CACCACAGATACTTAGCAAGGGCAAAGGCAGTTGACCTATCAGAAGCCGCCGAAATGAAGATTTTATATCATGGTGGAGTTGACTGCGAGGGGCATAGAGTAATGGTTGTAATTGGAGCCCATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTTTATATGTTGTGAAGGAGTTTGAACCTTTGATTAAAGAACCTTACAGTGTTGTGTATTTTCATTCTGCCGCAGCGTTACATTTTGTTCCAGATACCCGATGGGTCAAGCATATACACCAAATCATGGGACCAAGACATAAGGCTAATCTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTTACTTGTGGACTCACAGGTTTGGGCAAAGGTGGAATATATGGACAAGTTGTGTGATTTGTTT---AAATATGTACCACAAGATCAGCTTACGATC------CCCGATTTTGTTTTCCAGCATGACATGGATGTGCATGGTGGTTCTCAGTAG--------------------------------------------------------- Diplazium_wichurae_UFJN ------------------------------------------------------------------------------------------ACGCCC------------------------------------TTGATTTGCCAAACT---------GATGATGGAGGAGGGCCGTTTGCAGACCCTCTCATCTTTCCCTCCACT------TCCTCCCCTTCCAAATTCCCCTGCCTCGCCCTTCTCAACTCCAAACTCTTCGTGTGGCGTGGCGACCCTTGGCTCCTCACTGTCGATGCAGTTGTTAACTCTTCTAATGAGACTCTTGATGTGAAGGAAAGTAGCCCTGGGCTGCATGCGGCATCCGGGCCTAGGCTTGCTGAGGAATGTGCAGGTCTGGGTGGATGTAGAACGGGGATGGCTCAAATAACTGGGGCCTATGAATTGCCTTCAAGGAGGGTGATACACACTGTTGGACCAAAATATGTAGAAAAATATCATACAGCTGCTGAAAATGCTTTGAGTCGCTGCTATCAGTCATGCCTTGAGCTC---CTAATTGAAAATGACCTTCAAAGTATTGCGCTTGGATGCATATACACAGAGTCTAAAGAATATCCACGTGAACAAGCAGCACATGTTGCCTTACGTACTTTGCGGCGCTTCTTGGAGAAACACAAGGACAGAATTAATGCAGTGGTTTTATGCTTTGCAGCAGATATGGATATAGAAATATATGAAAAACTATTACTCCTGTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGTTGATGAAAATGGAGAGACTATCATAGATGAGCGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAAATCCCCTATATCG---ACAAACACAGTTCATGAATTTACATCCAGCAGGATCAGC---------------------------------------------------TCCAAGGGATCTTCGCTCGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAATGGCAAAGAGCTGGAAAGGCGCATGCTGGTTGGTTTTGGTCAAAATGGTTAGGTCATGACAGTTGTGCCAATGGATTGGATACC---------------TCATTC---CACAAGAGATATTTGGCAAGGGCAAAGGCAGTTGACCTATCCAAAGCTGCGGAAATGAAAATTTTGTATCATGGTGGAGTTGACTGCGAGGGGCATCGAGTAATGGTTGTAATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTCGAACCTTTGATTAAAGAACCTTACAGTGTTGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCATTTACACCAAATCATGGGACCAAGGCATAAGGCCAATTTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTTACTTGCAGACTCACAGGTTTGGGCAAAGGTGGCATATATGGACAGGTTATCTGATTTGTTT---AGATACGTACCACAAGATCAGCTAACAATC------CCGGATTTTGTTTTCCAGCATGACATGGATGTGCATAGTGGTTCTCAGTAG????????????????????????????????????????????????????????? Dipteris_conjugata_MEKP ATGCAGTCGCCACGAAGGAGCACCGTTGTGGGCGACCGTGTCATCACGCTCGACCAGGTGCCCTCATGGAGCGATCTCGAGCTTTATCCTACTCCT------------------------------------CCAGATGTTCTTGGCGGTAGCGTC---TCTTTGCTTGGATCTTTTGCCGATCCTCTGACCTCGCTTTCTCTACTTCATGCTTCGCCTCCCAAGTTTCCGGTAGACCACGACATCAACTCTAAGGTACATCTTTGGCAAGGAGAAGCGTGGAACGTCGACGTGGATGCAGTTGTCAATTCCTCCAACGAGAATCTTGATGTCAAAGAAAGTAGCCCAGGGCTGCACGCAGCTGCTGGCCCAGGGCTTGCGCAGGAATGTGCCACTTTGGGCGGGTGTAGAACTGGGATGGCACAAGCTACAGGTGCTTATGATCTACCAGCAAGAAGGGTTATACATACAGTTGGGCCAAAATACGTGGAAAAGTACCATTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTTATGAAAGATTATTGCTGCTCTACTTTCCTAGGAATAAACCTGAAGAGGACAATGCCTTGCTGAATCTACCAGCAGATATTGGAGATGAGAATGGAGATGCCGTAATCTCTGAACGTAAAATCAGGATAACAGCACTTCCAGGTGTTTCTGATCTGGCTGCTGAACCAAGGTCTCCTGTTTCC---GCGGATGTGAATCTGCCAGTTTTGCCTCGCGGGAAGCTTGAC------------------------------------------------TCTAAAACATCCCTGGTAGATGCTTCTTTTTTGTCAATGACTGAAGACCCAGACCAGAGACGAGAGGAACAGTGGGAGCGAGCTACACAAGCACATGCTTCTTGGATTTGG---------------------------------------------------------------------------------------------------------------------------ATGAGGATACTGTATCATGGTGGATTGGATATTCAGGGGCGACAAGTGATGGTAGTGGTGGGTGCACATTTTTTACTGCGCTGTCTGGATTTAGAACAGTTCCTCCTGTATGTTGTAAAGGAATTTGAACATCTCATTCATAAACCTTATATTATCGTGTATTTTCACACGGCTGCAGCACTACAATTCATGCCGGATATCCGATATCTGAAGCATATACAACAGATCTTGGGACACAAACATAAGAGGAATTTGCAGGAAATTTTTATGGTACATCCTACTTTGGGTTTGAAAGCTGCAGTTCTGTTCTTGAGGCTTTGCGTAGATTCAGAGGTTTGGAAGAAAGTAGTCTATGTAGACAGTTTGTTGCAGCTATTC---AAATATGTTCCTCAAGGGCAGCTAACAGTC------CCAGATTTTGTCTTCCAG------------------------------------------------------------------------------------------ Equisetum_diffusum_CAPN --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTAGGACTGGAATAGCTAAATCCACAAATGCTTATGATTTACCAGCAAGGAAAGTCATACATACAGTGGACCCAAAATATGCTGTAAAATATCATACTGCAGCAGAAAATGCTTTGAGTCATTGCTACCGATCTTGTCTTGAGCTT---CTGATTGAGGAAGGGCTTTCAAG---------------------------------------------------------ACATGTAGCGATTCGAACGGTGCGGCGTTTTTTGGAAAAACACAAGGATAAAATTACAGCGGTAGTCTTTTGCACCTCGACTACATCTGATACGGAAATCTACAAGAGGCTTCTCCCTCTCTACTTCCCGCGGAATAAGCCCGAGGAAGAGTATGCCCGATTGAACCTTCCTGCAGATGTCGGGGATGAGAACGGGGAGACGAATATATCTGAGCGGAAGATAAGAATAACCGCCCTTCCA---------------------------------------------------------------------------------------------------------------------------------------TGGGTTGATACGGTGGTGGATCCGTCTTTCATGTCGATGACCAAAGATCCGGATCAAAGGCGGAGGGAACAGTGGGAGAAGGTGGCCCAGGCTCAGGCGGG--------------------------------------------------------TAGCTGAGGAAGACTCTCTC---CACGCAAGATACCTTTCTAGGGCTAATACTTTCAGCTTAACTGAGATTGCAGAAATGAAGATACTCTATCCTGGAGGAGTTGATATTGAGGGGCGGCCAGTAATGGTCATTGTAGGTGCACATTTTTTGCTTCGGTGTCTTGATCTAGAGCGATTTGTTCTTTATGCTGTCAAGGAGTTTGAACCTTTGATTCAGAAGCCTTACACAATTGTTTACTTTCATTCAGCTGCGGCACTGCAATTACAACCTGACTTAGGGTGGATGAAACGTCTGCAACAAATTCTTGGCCGTAAGCACCGAAGAAACCTTCATTCGGTGTATGTATTACATCCCACGCTAGGCCTGAAAGCAACAATTCTAGCACTGCAATTATTGGTTGAACCGGAGGTGTGGAGAAAGGTGGTCTATGTAGAAAGATTGCTGCAACTTTTT---AGATTTGTACCTCGGAAAGAACTAACTATA------CCAGATTTCGTCTTTCAACACGACCTTGAGGTGAATGGTGGAAGTGGAATGATTGTGGATCCTTGAACAAGGTATATAACAAATATAACTTTTCCCAGATCATTTTAA Equisetum_hyemale_JVSZ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAGTCATTGCTATCGATCTTGTCTTGAGCTT---CTGATTGAGGAAGGGCTTTTGAGTATTGCAATGGGATGCATCTACTCGGAAGCAAAAGGCTATCCCAGAGAGCCAGCTGCACATGTAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGAGAAGGTGGCCCAGGCCCAGGCGAGTTGGAGCTGGGCTAAATGGCTTGGAATCGGAAACCTCGGTGGACCATTGCTCTCTGTAGCCGAGGAAGACACACTC---CACGCAAGATACCTTTCCAGGGCTAATACTTTAAGCTTAACCGAGATTGCAGAAATGAAGATACTCTATCGTGGAGGAGTTGATATTGAGGGACGGCCAGTAATGGTTGTTGTAGGTGCACATTTTTTGCTTCAGTGTCTTGATCTAGAGTGCTTTGTTCTTTATGCTGTCAAGGAGTTTGAACCTTTGATTCAGAAGCCTTACACGATTGTTTACTTTCATTCGGCCGCGGCACTACAATTACAACCTGACTTAGGGTGGA?GAAACGTCTGCAACAAATTCTTGGCCATAAGCACCAAAGAAACCTTCATTCAGTGTATGTTCTTCATCCCACGCTAGGCTTGAAAGCAACAATTCTAGCACTGGAATTATTGGTCAAACCAGAGGTGTGGAGAAAGGTGGTCTATGTAGAAAGATTGTTGCAACTTTTT---AGATTTGTACCTCGGGAACAACTAACTATA------CCGGATTTTGTCTTCCAACATGACCTTGAGGTGAATG----------------------------------------------------------------------- Gaga_arizonica_DCDT AGAAGAATGGAGAGGACGAGGACAACGTACAACAGCAGCGTGGTAAAGCTGGATCAGGTACCTGCTTGGAGCGACCTAGAGGTGTTTCCCACATCT------------------------------------CCCTCGCTCGAGAGCGGTCTCTTG------GGAGGAGGGGCCTTTGCAGATCCCCTCCTCTCCCCGTCCTCGCCC---CCTTCGCGTTCGAAGTTCCCCTGTGACCCCATCCTCAATTCCAAACTCTTCGTCTGGCACGGTGACCCTTGGGTCCTCCTCGTGGATGCCATCGTTCACACTTCTAACGAGACTCTTAATGTCAAGGAAAGTAGTCCTGGCCTTTACAGTGCAGCTGGGCCGAGACTTGCTGAGGAATGTGGGGGTCTGGGTGGATGTAGAACAGGGACGGCACACATAACTGGGGCCTATGACTTGCCTGCAAGAAGGGTCATACATACTGTTGGACCAAAATATGTAGAGAAGTACCATACAGCTGCTGAAAATGCACTGAGTCGCTGCTATCAATCATGTTTTGAGCTG---CTGATTGAACATGGTCTCCAAAGTCTTGCGGTTGGATGCATCTACGAGGAGTCCAAGGGGTATCCTCGTGAAGAGGCAGCACATGTGGCCTTACGTACTTTACGGTGCTTCTTGGAGAAACACAATGACAAAGTCAGTGCGGTGGTTTTATGCCTTTCAGCAGTTTCAGATTTAGACATCTACGAAAAACTTTTACCCTTCTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCTTTGCTGACTTTACCAGCAAATGTTGGTGATGAAAATGGAGAGACTATCATAGATGAGCGTAAGATCAGAATAAAAGAACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAATACCCCCACATCC---ACG---------------------------------------------------------------------------------------CTTGAGGGATCTTCGCTCGATTCTACTTTTCTTTGCATGACGGAAGATCCTGATGAAAGACGCGAGCAACAGTGGCAAAGGGCTCGCAAGCCGCATGCTAATTGGTTGTGGTCAAAATGGACAGGTCAAGGT---CCTGCTGCTTGTATAGATACG---------------TCTTTC---TACTTCAGATACTTAGCAATGGCGAAGGCTGTTGACCTCTCAAAAGCTGCAGAAATGAAGATACTGTATCGTGGGGGAGCTGATTACGAGGGGCATCGAGTGATGGTTGTGGTTGGGGCACATTTTTTGCTGCGATGCCTTGATTTGGAGCAGTTTCTTCTTTATGTTGTCAAGGAATTCGAACCTTTGATCAAAGAAAGTTACAGCATTGTTTATTTCCATTCTGCAGCAGCATTAAATTTTGTTCCCGATACCGGATGGATGAAGCGTATACACCACATCATGGGACTCAGACATAAGGCAAACTTACATAGAATATACATGGTTCACCCCACATTGGGTTTGAAAGCGAGCGTAATGCTTCTGAGATTACTCGCGGATTCGCAGGTATGGGCAAAGGTGGCGTATGTGGATAGTTTAATGGATTTGTTT---AGATATGTACCTCAAGACGAGCTTACAATC------CCGGACTTTGTTTTCTCGCATGACAAGGATCTGGTTGGTCGCTCTCAATAG????????????????????????????????????????????????????????? Gymnocarpium_dryopteris_HEGQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTTCATCACTGTAGATGCAGTTGTCAACTCTTCTAATGAGACTCTTGATGTGAAGGAAAGTAGCCCTGGGCTGCATGCGGCATCCGGGCCTAGGCTTGCTGAGGAATGTGCAGGTCTGGGTGGATGCAGAACGGGGATGGCTC--------------------------------------------------------------------------------------GAAAATGCTTTGAGTCGCTGTTATCAGTCATGCCTTGAGCTC---CTAATCGACAATGGCCTTCAAAGTATCGCGCTTGGATGCATCTACATAGAGTCTAAAGAATATCCGCGTGAACAAGCAGCACATGTTGCCTTACGTACTTTGCGGCGCTTCTTGGAGAAACACAAGGAAAGAATTAATGCAGTGGTTTTATGCTTTTCAGCAGA----------GAAATATATGAAAAACTATTACTCCTGTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAAAATGGAGAGACTATCATAGATGAACGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAAATCCCCCATATCC---ACGAACACAGTTGATGCATTTACATCCAGCAGGGTCAGC---------------------------------------------------TCCAAGGAATCTTCACTCGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGGCACATCCTGGTTGGTTTTGGTCAAAATGGCTAGGTC-TGAGAGTCGTGCCAATGGATTGGATACC---------------TCATTC---CACAACAGATATTTAGCAAGGGCAAAGGCAGTTGACCTATCTGAAGCTGCAGAAATGAAAATTTTGTATCATGGTGGAGTTGACTGCGAGGGGCATCGAGTAATGGTTGTAATTGGTGCACATTTCTTGCTGCGATCCCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTTGAACCTTTGATTAAAGAACCTTACAGTGTTGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCAAATACACCACATCATGGGACCAAGACATAAGGCTAATTTACATAGACTCTATATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTTACTTGCAGACTCACAGGTTTGGGCAAAGGTGGCATATATGGACAGGTTATCTGATTTGTTT---AGATACGTACCACAAGATCAGCTAACAATC------CCCGATTTTGTTTTCCAGCACGACACG------------------------------------????????????????????????????????????????????? Homalosorus_pycnocarpos_OCZL ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTATAATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTGTATGTTGTGAAGGAGTTTGAACCTTTGATTAAA???????????????????ATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCAAATACACCAAATCATGGGACCAAGGCATAAGGCTAATTTACATAGACTCTACAT????????????????????????????????????????????????????????ACTCACAGGTTTGGGCAAAGGTGGCATATATGGACAGGTTATCTGATTTGTTT---AGATATGTACCACAAGATCAGCTAACAATC------CCTGATTTTGTTTTCCAGCATGACATGGATGTGCATGGTGGTTCTCAGTAG????????????????????????????????????????????????????????? Leucostegia_immersa_WGTU ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAGTCATGCCTTGAGCTG---CTGATTGAAAATGGCCTTCAAAGTATTGCACTTGGATGCATCTACACAGAGGCTAAAGAATATCCGCGTGAACAAGCAGCACATGTCGCCTTGCGTACTTTGCGGCGCTCCTTGGAGAAACACAAGAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGTCATGACCGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCCAGAAAGGCGCGTGCTGGTTCGTTTTGGTCAAAATGGCTAGGTCATGAGAGACATGCGAATGGGTTGGATTCC---------------TCATTT---CGTCACAGATTTGTTGCAAG----------------------------------------------------------------------------------------------------CATTTCTTGCTGCGATGCCTTGATCTGGAACAGTTCCTTTTATATGTCGTGAAGGAGTTTGAACCTGTGATTAAGGAACCTTACAGTGTTGTGTATTTCCATTCTGCAGCAGGGTTAAATTTTGTTCCAGATACCCGATGGGTGAAGCATGTACACCAAATTATGGGACCAAGACACAAGGCTAATTTATGTAGACTCTACATGGTACATCCCACCTTGGGTTTGAAAGCGAGTGTTCTGTTGCTGAGGTTACTTGCAGATTCACAGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Lindsaea_linearis_NOKI ------------------------------------------------CTCGACCAAGTGCCTGCATGGAACGATTTGGAGTTGTTTCCAACCCTTAGCGATGCTGCTGTTGAGGAGGAAGAAGAAGAGGACAGAAGAAGAAGAAGAAGAGGGCCGTCGGTCGTGGGTGGTTCCTTCGCCGACCCCCTCATCTCTCCGTCTCCCCCT---TCTTCTTCTCCCCACTTTCCCTGCGATGATTCCCTAAATTCTAAGCTATTCCTATGGCGCGGTGACCCTTGGACTCTCCAGGTCGACGCTGTAGTCAATTCCACAAACGAGTTACTTGATTTGAAGGAAAGTAGCCCTGGGCTACACATGGCAGCTGGGCCCCGTCTTGCTGAAGAGTGTGCAGGGCTGAGTGGCTGTAGGACGGGAATGGCACAAATAACGGGGGCTTACGAGTTGCCAGCCAGATGGGTTTTACACACCGTTGGGCCAAAGTACATGGAAAAGTACCATTCAGCTGCCGAAAATGCCCTTAGCCGCTGTTATCAGTCATGCTTTGAGCTG---CTAATAGAGCACAGACTTCAAAGTATTGCATTCGGCTGCATCCATACAAATTGTAAAGGGTATCCTCGTGAACAAGGGGCACATGTAGCCTTACGTACCATTCGCCGTTTTTTGGAGAGGCACAAGGAAAAAGTTAGAGCACTAGTCTTATGTTTTTCAGAGGTTGTTGATGCTGATATTTATGGAAGACTATTACTCCTCTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCATTGCTGAATTTACAAGCAGATGTTGGTGACGAAAATGGGGAGACTAGCATAGCCGAACGTAAAATTAGAATAAAAGCACTTCCTGTGAGCTCTGATGCAGATGTTACGCCAAGCAATCCTGATCCT---TTGAAAGCAAAGGATCCATCTTCAATCAGTGGTATCAGC---------------------------------------------------TCACAGGGACTCTCTCTCGACACTTCCTTCCTCTCAATGGTTGAAGATCCTGATCGTAGACGTGAAGAACAGTGGGAACAGGCCCGCACATCACATACGCATTGGTCGTGG------TGGGGTTCTCCTCAGAGGAATGATGGTGGCCTCGACACC------------------CCA---TACCACCGATATCTAGCCCAGGCAAAGGCAGTAGACCTCTCAAAAGTTGCAGAAATGAAAATAATGTATCGTGGTGGCATTGACAGGGATGGGCACCCAGTGATGATAGTGGTTGGAGCACATTTTTTGTTGCGATGCCTTGATCTGGAACAATTCCTTCTCTTCGTGTTGAAGGAATTTGAACCTTTGATCAAACAACCGTACACGATTGTGTATTTCCACTCTGCTGCAGCTTTGCAATGTGTTCCGGATACAGGATGGATGAGGCGTATACACCAAATAATGGGACCCAGGCATCAGTTGAATCTACATAGGATCTACATGGTACACCCGACCTTGGGTTTGAGAGCCAGTGTTCTTCTGCTGAGGTTACTTGCAGACTCAGAGGTTTGGGCAAAGGTCGCGTACATGGAGAACCTATCCGATCTGTTC---AGATATGTTTCACAGAAGCAACTAACAATT------CCTGACTTTGTTTTTCAGCATGATGTAGACCTGCATACTGCTTCTCAGCACCCCGTGGGCGCGTGA------------------------------------------ Lindsaea_microphylla_YIXP ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGTTGGTGACGAAAATGGGGAGACTAGCATAGCCGAACGTAAAATTAGAATAAAAGCACTTCCTGTGAGCTCTGATGCAGATGTTACGCCAAGCAATCCTGATCCT---TTGAAAGCAAAGGATCCATCTTCAATCAGTGGTATCAGC---------------------------------------------------TCACAGGGACTCTCTCTCGACTCTTCC---------------------------------------------------------------TCACATACGCATTGGTCGTGG------TGGGGTTCTCCTCAGAGGAATGATGGTGGCCTCGACACC------------------CCA---TACCACCGATATCTAGCCCAGGCAAAGGCAGTAGACCTCTCAAAAGTTGCAGAAATGAAAATAATGTATCGTGGTGGCATTGACAGGGATGGGCACCCAGTGATGATAGTGGTTGGAGC??-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------????????????????????????????????????????????????????????? Lygodium_japonicum_PBUU -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGTATGTAGAAAAATACCATTCAGCTGCAGAAAATGCTTTGAGCCGTTGCTATTTATCATGCCTTGAGCTG---CTGATTGAAAACAACCTCTGCAGCATTGCCTTTGGATGCATTTACACAGAGGCAAAAGGATATCCACGAGAGAAGGCTGCTCATGTGGCATTATGTACAGTGAGGAGGTTTTTAGAGAGACACGAAGGCAAAATTAGTGCACTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTGTATACTTCCACTCTGCTGCAGCTTTGCAATTTTTTCCAGACTTCCTGTGGATGAAGCATATTCAGAAGATTTTGGGGGAAACACACAAGAAAAATTTGCATAAGATCTTCATGGTCCATCCCACGTTGGGTTTGAAAGGAACCGTTCTGTTATTGAGACTCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myriopteris_rufa_GSXD TGGGAAATGGAGAGGACAAGGACGACGCACAACAGCAGCGTGGTAACGCTGGACCAGGTACCTGCATGGAGCGATTTGGAGGTGTTCCCCACACCT------------------------------------ACCTCCCTTGAAAGCGGCCTCTTG------GGAGGAGGGACCTTTGCAGATCCCCTCCTCTCCCCCTCCTCTCCC---TCCTCCCTTTCGAAGTTCCCCTGTGACCCCTTCGTCAACTCCAAACTCTTTATCTGGCACGGTGACCCTTGGGTACTCCTCGTCGATGCAATCGTTCATGCTTCCAACGAGACTCTTAATGTAAAGGAAAGTAGCCCTGGCCTTCATATTGCATCTGGGGCGAGGCTTGCTGAGGAATGTGCGGGTCTGGGTGGATGTCGAACTGGGACAGCAAAAATAACTGGGGCTTATGACTTGCCTGCAAGAAGGGTCATACATACTGTTGGACCAAAATATGTAGAGAAGTACCATACAGCTGCCGAAAATGCACTGAGTCGCTGCTATCAATCATGTTTTGAGCTG---CTGATTGAGCATGGTCTTCAAAGTATTGCGGTTGGATGCATCTATGAGGAGTCCAAGGGGTACCCTCGTGAACAGGCAGCACATGTGGCCCTACGTACTGTACGGTCCTTCTTGGATAAACACACGGACAGAATCAGTGCGGTGGTTTTATGCTTTTCAGCAGTCTCAGATTTAGACATCTATGAAAAACTCTTACCCTTCTACTTTCCTAGAAATAAAATAGAAGAGCATAACGCTTTGCTGACTTTACCAGCAAATGTTGGCGATGAAAATGGAGAGACTATCATAGATGAACGTAAGATCAGAATAAAAGAACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAAAACTCCCATGTCC---ACGAAAAAAATTAACCCTTTTACATCCAGCAGGTACATATGTCGCTAGAGCTCACCCTTGTTATTGTATTTTTGCAGACTGATACTCAC?CTTGAGGGATCTTCGCTCGATTCTTCTTTCCTTTGTATGACTGAAGATCCGGATGAAAGACGCGAGCAACAGTGGGAAAGAGCACGCAAGCCGCATGCTGGTTGGTTGTGGTCGAAATGGACAGGTCAAGGT---TTTGCTGACCGTATAGATACC---------------TCCTTC---TACTGCAGATACTTAGCAATGGCAAAGGCTGTTGACCTCTCAAAAGCTGCAGAAATGAAGATACTGTATCGTGGGGGAGTTGATTTTGAAGGGCATCGAGTGATGGTTGTGGTTGGGGCACATTTTCTGTTGCGATGCCTTGATTTGGAGCAGTTTCTTCTTTATGTTGTCAAGGAATTTGAACCTTTGATCAAAGAAACTTACAGCATTGTGTATTTCCATTCTGCTGCCTCGTTGAATTTTGTTCCAGATACTGGATGGATGAAGCGTATACACCACGTCATGGGACCCAGACATAAGGCAAACTTACATAGAATATACATGGTTCATCCCACGCTGAGTTTGAAAGCGAGCGTAATGCTGCTGAGATTACTTGCAGATTCACAGGTATGGGCAAAGGTGGCGTATGTGAATAATCTATCGGATTTGTGT---AGATATGTACCTCAAGACCAGCTTACTGTC------CCTGACTTTGTTCTCCAGCATGACATGGATCTACGTGGTGGTTCTCAATAG????????????????????????????????????????????????????????? Nephrolepis_exaltata_NWWI ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGCTGGTTGGTTTTGGTCGAAATGGCTAGGTCATGAAAGATGTGCCAATGGTGTGGATGCC---------------TCATTT---CATCACAGATACTTAGCAAGGGCAAAGGCAGTTGACTTATCAGAAGCTGCGGAAATGAAAATTTTGTATCATGGTGGAGTTGACTGTGATG--------GTAATGGTTGTGATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTTTGTATGTTGTGAAGGAGTTTGAGCCTCTGGTTAAAGAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATATATCGACAGGCTATCCGATTTGTTT---AGATATGTACCGCAAGATCAGCTAACCATT------CCGGATTTTGTTTTCCAGCATGACATGGATGTGCATGGTGGTTCTCTGTAG--------------------------------------------------------- Notholaena_montieliae_YCKE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGGACCAAAATACGTAAAGAAGTACCATACTGCTGCTGAAAATGCACTGAGTCGCTGCTATCAATCATGCTTTGAGCTG---CTGATGGAACATGGCCTCCGAAGTCTTGCGGTTGGATGCATCTATGAGGAGTTGAAGGGGTATCCTCGTGAAGAGGCAGCACATGTGGCCTTACGTATTCTACGGTGCTTCTTGGAGAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGGGATCTTCGCTCGATTCGTCTTTTCTAAGCATGACAGAAGATCCTGATGAAAGACGCAAACAACAGTGGGAAAGAGCTCGCAAGCCGCATGCTGGTTGGTTGTGGTCAAAATGGACAGGTCAAGGT---CCTGTTGATCGTATAGATACA---------------TCTTTC---TACTTCAGATACTTAGCAATGGCAAAGGCTGTTGATCTCTCAAAAGCTGCAGAAATGAAGATACTGTATCGTGGGGGTATTGATTATGAGGGGCATCAAGTGATGGTTGTGGTTGGGGCACATTTTTTGCTGCGATGCCTTGATTTGGAGCAGTTTCTTCTTTATGTTGTCAAGGAGTTTGAACCTTTG---------------AGCATTGTGTATTTCCATTCTGCGGCAGCATTGAATATTGTTCCCGATACCGGATGGATGAAGCGTATACACCACATCATGGGACCCAGACATAAGGCAAACTTACAAAGAATATACATGGTTCACCCCACATTGGGTTTGAAAGCGAGCGTAATGGTTCTGAGATTACTTGCGGATTCGCAGGTATGGGCAAAGGTGGTGTATGTGGATAGTCTATCGGCCTTGTTT---AGATATGTACCTCAAGGCCAGCTTACAATC------CCGGACTTTGTTTTCCAGCATGACATGGATCTGCATGGTAGCTCTTCATAG????????????????????????????????????????????????????????? Onoclea_sensibilis_HTFH ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACATGTTGCCTTACGAACTTTGCGGCGCTTCTTGGAGAAACACAAGGACAGAATTAATGCAGTGATTTTATGCTTTTCAGCAGATATGGATATAGAAATATATGAAAAACTATTACTCCTGTACTTTCCTAGAAATATAATAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phlebodium_pseudoaureum_ZQYU ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAACTCTTCCAATGAGACTCTTGGTGTGAAGGAAAGTAGCCCTGGGCTGCATACTGCAGCTGGGCCTAGGCTTGCTGAGGAATGTGCAACTCTGGGTGGTTGTAGAACTGGGATGGCTCAAATAACTGGTGCCTATGATTTGCCTGCAAGGAAGGTTATTCACACTGTTGGACCAAAATATGTTGAAAAGTACCATACAGCTGTTGAAAGTGCTTTGAGCCGCTGCTATCAGTCATGTTTTGAGCTA---CTGGTTGAAAATGGCCTTCGAAGTATTGCTCTTGGATGCATCTACACAGAGGCTAAAGAATATCCACGAGAACAAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAAGGCGCATGCTGATTGGTTTTGGTCAAAATGGCTAGGTCATGAGAAACATGCCGATGGATTGGATACC---------------TCATTC---CACCACAGATACTTAGCAAGGGCAAAGGCAGTCGACCTATCAGAAGCTGCAGAAATGAAAATTTTGTATCGTGGTGGAGTTGACTGTGAGGGGCATCGTGTGATGGTTATAGTTGGAGCACATTTCTTACTTCGATGCCTTGATTTGGAACAGTTCCTTTTATATGTTGTGAAGGAGTTTGAACCTGTGAGTAAAGAACCTTATAGCATTGTGTATTTTCATTCAGCTGCCACGTTACATACTGTACCAGATTTTCAGTGGGTGAAGCATTTACACCAAATTATGGGACCAAGACATAATGCTAATCTACGAAGACTCTACATGGTACACCCCACCTTGGGATTGAAAGCTAGTGTACTATTATTGAGGCTACTTGCAGACCCACAGGTTTGGGCTAAGGTCACATATATTCACAGGCTATCTGAGTTGTTC---AGACATGTACCACAAAATCAGCTCAAAATC------CCCGATTTTGTTTTCCAGCATGACGTGGATGTGCATGGTGGTTCTCAATAG--------------------------------------------------------- Phymatosorus_grossus_ORJE ------ATGGAGTCGAAGATGACAAAACCGAGCAGCAGGGTGGTGAAGTTGGATCAGGTACCAGCTTGGAGCGACTTGGATTTGTTTCCCACGCTC------------------------------------TTGATTGGACAA---------GCTGTTGATGGAGGGGAGCGATTTGCTGACCCTCTTGTCTCTCCTTCCACT------TCCTCCCTTGCCAAATTCCCCTGCCATCCCCTTCTTAATTCCAAGCTCTTCCTATGGCGAGGTGACCCTTGGGTTCTCTCTGTTGATGCAGTAGTTAACTCTTCCAATGAGACTCTTGGTGTGAAGGAAAGCAGCCCTGGGTTACATGATGCAGCTGGGCCTAGGCTTGCTGAGGAATGTGCAGCTCTGGGTGGATGTAGAACTGGGATGGCTCAAATAACTGGTGCCTATGAGTTGCCTTCAAGGAAGGTTATACACACTGTAGGACCAAAATATGTTGAAAAGTACCATACGGCTGTTGAAAGTGCTTTGAGTCGCTGCTATCAGTCATGTTTTGAGCTG---CTAGTTGAAAATGGCCTTCAAAGTATTGCTCTTGGATGCATCTACACCGAGGCTAAAGAATATCCGCGGGAACAAGCTGCACATGTTGCCTTACGTACTCTGCGGCGTTTCTTGGAGAAGCACAAGGACAGAATTTATGCAGTGGTTTTATGCTTTTTGACGGAAATGGATATAGAAATATATGAAAGACTATTACTCCTGTACTTTCCTAGAAATATAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAGAATGGGGATACTATCATAGATGAGCGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTAATGCAGATACTAATGCAAGGTCCCCCACAATC---ACAAGCACAGTT---GAATCTACATTCAGCAGGGCGAAG---------------------------------------------------TATGAGGGATCTTCACTTGATTCTACATTCCTTATCATGACCGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGTGCTGGAAAGGTGCATGCTGATTGGTTTTGGTCAAAATGGCTAGGTCATGAGAAACATGCCGATGGATTGGATACC---------------TCATTC---CACCACAGATACTTAGCAAGGGCCAAGGCAGTCGACCTATCAGAAGCTGCAGAAATGAAAATTTTGTATCGTGGTGGAGTTGACTGTGAGGGGCATCAAGTAATGGTTATAGTTGGAGCACATTTCTTGCGGCGATGCCTTGATTTGGAACAGTTCCTTTTATATGTTGTGAAGGAGTTTGAACCCGTGAGTAAAGAACCTTACAGTGTCGTGTATTTTCATTCAGCTGCCGCATTACAAACTGTACCAGATACGCAGTGGGTGAATCATTTTCACCAAATCATGGGACCAAGACATAAGGCTAATCTGCGAAGGCTCTACATGGTACACCCCACCTTGGGATTGAAAGCTAGTGTACTATTATTGAGGCTACTTGCAGACCCAAAGGTTTGGGCTAAGGTGAAATATCTTCACAGGCTATCTGAGTTGTTT---AGATACGTACCACAAAATCAGCTCAAAATC------CCCGATTTCGTTCTGCAGCATGACATGGATATAACTGGTGGTTCTCAATAG--------------------------------------------------------- Pilularia_globulifera_KIIX AGGCTGGTGAACTCGTCGTCGATGAAGCGAAGCCACAGCACAGTGCCACTCGACCAGGTGCCTTTGTGGAACGATGTGGAGCTGCATCCTCCGGCG------------------------------CTGCCGTTGCAGAATATCGTATCTAGTGAACATTATGATGGCGTTGAAGCCGATGATCCGCTCCTTTCACCGTCGCGGGCCACCACATCATCTCCCAAGTTCCCTGTCAATGCCAGTCTCAACTCCAAGCTCTATATATGGAGAGGACAGCCTTGGTGCCTCCAAGTCGATGCCGTTGTCAACTCCACCAATGAGACTCTTGATGTAAATGAAAGTAGCCAAGGATTGCATGATGCCGCTGGCCCAAGGCTTGCTGAGGAATGTGCAGCTTTGAGTGGCTGTAGGACTGGAATGGCACAGATTACAGGTGCATATGAATTACCGGCAAGGAGGATCATACATACAGTTGGGCCAAAGTATGTTGAAAAATATCGTTCGGCAGCAGAGAATGCTTTAAGCCGCTGCTATCAGTCATGCCTGGAGCTA---TTAATTGAACATGGTCTCCAAAGTATTGCTCTAGGATGCATATACACAGAATCAAAAGGATATCCTCCAGAACAAGCTGCTCATGTTGCTTTACGTACATTACGACGTTTTCTAGAGAAACACGCAGATAAAATCAGTGCACTGGTATTGTGCTTACCAGCAATGAAAGACATGGAAATATATGAAAGATTGCTACTCCTCTACTTCCCTAGAAATGATATTGAAGAGAATTATGCATTGGTGAATTTGCCAGCTGATATTGGGGATGAAAATGGAGAGAGTACTGTATTTGAGCGCAAAATTAGGATAAAAGCAGTTCCTGGAGTTCCCGATCTAGGCCTTGGAGTGAATTCC---ATTTCG---GATACTGCAGCTTCACCAATTACATCATCCAGGGCTCTT---------------------------------------------------CTAGAGCAATCTCCTATGGATTCATCTTTTCTCTTTATGACTGAAGATCCGGATCGTACACGGGAAGAACAGTGGGAGAAAGCTGTGAAAGGAGACCCTATCTGGATTTGGTCAAAATGGAGTGGGTTGAATAATGACAGTGGTTTGGTGGACACC---------------TCACTC---CATCATAGATATTTAGCAAGGGCAAAGGCCATTGATCTCTCAGAAATCAGACATATGAAAATATTGTATCACGGTGGCGTAGACAAGGAAGGGCATTCAATTATGGTAGTAGTTGGAGCTCATTTTTTACTACGATGTCTTGATTTGGAGCATTTCCTGTTATATGCTGTTAAGGAATTTGAACCCTTAATCAACAGGCCATACAGTGTTGTTTACTTCCATTCTGCAGCGGCTCTGAAATTTGTCCCAAATACGCAATGGATGAAGCATATACATCAAATTATGGGCCCTAAACACAAGGCTAATTTATCTAGAATTTATATGGTACATCCTACTCTGGGCCTTAAAGCCAGTGTGCTCATACTGAGGGTTCTCGTTGATTCAGAGGTTTGGACCAAAACCGTTTATGTTGACAGTTTATCTGATTTGTTC---AGTTTTATTTCACAAGATCAGTTAACTATT------CCAGATTTCGTTTTCCAACATGATGCTGAGCTTAATGGAAGTCTGGCTAACACTTGA--------------------------------------------------- Pityrogramma_trifoliata_UJTT AAGGCGGACATGGAGAGGAAGGCGAAGCGGAGTAACAGCGTGGTGACACTGGATCAGGTACCTGCTTGGAGCGACCTAGAGCTGTTTCCAACGCCT------------------------------------CCCTCCCTTGAGCGC---------AACCTGGGCGGCGGGACCTTTGCAGATCCCCTCCTCTCTCCCTCCCGTCCC---TCCTCCCCC---AAATTCCCCTGCGATTCCCAACTCAACTCTAAAATCTTCATCTGGCACGGTGACCCCTGTGTCCTCCTCGTTGACGCAATTGTTAACTCTTCCGACGAGGATCTAAATATAAAGCACAGTAGCCCTGGCTTTCTTATGGCT------------------------GGTGCTGGTCTGGGTGGATGTAGAACTGGGATGGCACGAATCACGGGGGCTTATGACCTGCCTGCAAGAAAGGTCATACACACTGTTGGGCCCAAATATGTTGAGAAGTACCACACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATAAGCAAAACTCTCCCATGCCC---ACGGATTCTAACGAAGCTTTGACATTCGGAAGG---------------------------------------------------------CTCAAGGGATCTTCGCTAGACTCTTCTTTTCTTTGCATGACTGAAGATCCTGATGAAAGACGCGAGCAACAGTGGGAAAGGGCACGCAAGCTGCATTCTGGTTGGTTGTGGTCAAAACGAACAGCTCAAGGT---CAAGCTCAAGATCTTACTGGCAAT---CTGGATAGCTCCTTT---TACTTCAGATACCTAGCAAGAGCAAAGGCTGTTGACCTTTCAAAATCTGAAGAAATGAAGATATTGTGTCACGGTGGAGTTGATTACGAGGGACATCGAGTGCTGGTTGTGATTGGGGCACATTTTTTGTTGCGATGCCTTGATTTGGAGCAATTTCTTCTTTATGTTGTCAAGGAGTTTGAGACGTTGATTAAACAGGACTACAGCATTGTCTATTTCCATTCCGCAGCAGCTTTAAACTTTGTCCCAGATATTGCATGGGTGAAGCATATACACCAGATCATGGGACCCAGGCACAAGGCGAATTTAGGTAAAATATACATGGTACACCCAACTCTGGGTCTAAAAGCCACTGTACTGCTGCTAAGATTATTTGCAGACTCAAAGGTTTGGGCAAAGGTGGTGTACATGGGCAGTCTCTCTGAATTATTT---CGATACGTACCCCAAGACCAACTAACAATT------CCTGAATTTGTTTTCCAGCATGACAGAGATCTGCATAGCAGCACTCAATAG????????????????????????????????????????????????????????? Plagiogyria_japonica_UWOD ---GTTAGCACAAGAAAGATGGAGAAGAGGGGCAACAGCGAGGTGACGCTTGATCAGGTGCCTGCGTGGAGCGATTTGGAGGTGTATCCCACGCCG------------------------------------CCGCACATTCTCTCACGTGCAGGCGAAGGTGGGGTGGGGCCTTTCGCCGACCCCCTCATCTCACCTACACACACC---TCCTTGCCTGCCAAGTTCCCCATAGACCACCACCTCAACTCCAAGCTCTACCTCTGGCGAGGGGACCCTTGGAACCTCCACGTCGATGCGGTCGTCAACTCTTCCAATGAGACACTTGATGTCAAGGAAAGTAGCCCAGGGTTACACGCTGCAGCTGGGCCAAGGCTTGCCGAGGAATGTGCGGGTTTGGGTGGATGTAGAACTGGGATGGCACAAATCACAGGCGCTCATGAGTTACCCGCAAGGAGGGTCATACATACTGTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTAGAGAAACACAAAGAAAAAGTTAGTGCCGTGGTCTTATGTTCTTTAGCAGCTCTGGACGTAGAAATGTACGAAAGACTATTGCTCCTCTACTTTCCTAGAAATAAAGCTGAAGAGCATAACGCGTTGCTGAAATTACCAGCAGATGTCGGAGATGAAAACGGAGAGACTATTATATATGAACGCCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTCATGGGAATAATGGTGGTGGGTTAGATGCC---------------TCATTC---CATCATAGATATTTAGCAAAAGCAAAGGTGGCCAACCTCTCAGAAGCTGCAGAGATGAAGATATTGTATCACGGTGGAGTCGACAATGAGGGACGCCCGGTTATGGTAGTGGTGGGAGCTCATTTTTTGCTGCGATGCCTTGATTTGGAACAATTCCTTCTTTATGTCGTGAAGGAATTTGAACCTTTGATTAACAAACCCTATAGTGTCGTGTATTTTCACTCCGCGGCAGCACTACAGTTCGTTCCAGACACTCCATGGATGAAGCGTATACACCAGATCATGGGACCTAAACATAAGGCTAATTTGCGTAGAATTTACATGGTGCACCCCACTCTGGGTTTGAAAGCCAGTGTACTCTTACTGAGGATATTTGTGGACTCAGAGGTCTGGGCAAAGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pleopeltis_polypodioides_UJWU ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAATAACCGATGCATATGATTTGCCTTCAAGGAAGGTTATACATACTGTTGGACCAAAATATGTTGAGAAGTACCATACAGCCGTCGAAAGTGCTTTGAGCCGCTGCTATCAGTCATGTTTCGAGCTG---CTAGTTGAAAACAGCCTGCGAAGTATTGCTCTTGGATGCATCTACACAGAGGCGAAAGAATATCCGCGGGAACAAGCAGCACATGTTGCTTTACGTACTGTACGGCGTTTCTTGGAGAAGCATGCGGACAGAATTGATGCAGTGGTTTTATGCTTTTCAACAGGAATTGATATAGAAATATATGAAAGACTATTACACCTGTACTTTCCTAGAAATGTAATAGAAGAGCATAATGCATCGCTGAATTTACCAGCAGATGTTGGTGATGAGAATGGGGATACTAGCATAGATGAGCGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTAATGCAGATGCTGAGGCAAGGTCCCCTACAATC---ACAAGCACAGTTCATGAATTTACCTCCAGCAGGGCTAAG---------------------------------------------------TATGAGGGATCTTCACTCGATTCTGCATTTCTTGTCATGATTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGTGCTGGAAAGGTGCATGCTAATTGGTTTTGGTCAAAATGGCTAGGTCATGAGAGACACGCCGATGGATTGGATACC---------------TCGTTC---CACCACAGATACTTAGCAAGGGCAAAGGCAGTCGACCTATCAGAAGCTGCAGAAATGAAAATTTTGTATCGTGGTGGAGTTGACCGTGAGGGGCATCGTGTAATGGTTATAGTTGGAGCACATTTCTTGGTTCGATGCCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTTGAACCTGTGAGTAAAGAACCTTACAGTGTAGTGTATTTTCATTCAGCTGCCGCGTTACACATTGTACCAGATTTCCAATGGGTGAATAATTTACACCGAATCATGGGACCAAGACATAAGGCTAATCTACGAAGACTCTACATGGTACACCCCACCTTGGGATTGAAAACTAATGTAGTATTACTGAGGCTACTTGCAGACCCTCAGGTTTGGGCTAAGGTGACATATTGTCACAGGTTATCTGATTTGTTT---AAATATATACCCATTGGAAATCTG---------------------------------------------------------------????????????????????????????????????????????????????????? Polypodium_amorphum_YLJA -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAAACGGATATAGAAATTTACGAAAGACTATTACGCCTGTACTTTCCTAGAAATATAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAGAATGGGGATACTATCATAGATGAGCGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTAATGCAGATGCTGAGGCAAGGTCCCCCACAACC---ACAAGCACAGTTCATGAATCTACATCCAGCAGGGCTAAG---------------------------------------------------TATGAGGGAGCTTCACTTGATTCTACATTCCTTATCATGACCGAAGATCCAGATCGAAGGCGTGAAGAGCAGTGGCAAAGTGCTGGAAAGGCGCATGCTGATTGGGTTTGGTCAAAATGGCTAGGTCATGAGAAACATGCCGATGGATTGGATACC---------------TCATTC---CACCACAGATACTTAGCAAGGGCAAAGGCAGTCGACCTATCAGAAGCTGCAGAAATGAAAATTTTGTATCGTGGTGGAGTTGACTGTGAGGGGCATCGTGTAATGGTTATAGTTGGAGCACATTTCTTGCTTCGATGCCTTGATTTGGAACAGTTCCTTTTATATGTTGTGAAGGAGTTTGAACCTGTGAGTAAAGAACCTTACAGTGTTGTGTATTTTCATTCAGCTGCCGCGTTACATATTGTACCAGATTTTCAGTGGGTGAAGCATGTACACCAAATCATGGGACCAAGACATAAAGCTAATCTACGAAGACTCTACATGGTACACCCCACCTTGGGATTGAAAGCTAGTGTAGTATTACTGAGGCTACTTGCAGACCCACAGGTTTGGACCAAGGTGACATATATTCACAGGTTATCTGATTTGTTT---AGATATGTACCACAAAATCAGCTCACAATC------CCCGATTTCGTTTTCCAGCATGACATGGATGCGCGTGGTGGTTCTCAAAAG????????????????????????????????????????????????????????? Polypodium_glycyrrhiza_CJNT ------------TCGAAGAAGACGAAACCGAGCAGCAGGGTGGTGACGTTGGATCAGTTACCAGCTTGGAGCGACTTGGAGGTGTTTCCCACGCTC------------------------------------TTGATTGGACAAGCTGGT------------GATGGAGGGCGATTTGCAGACCCTCTTATCTCTCCTTCCACT------TCCTCCCTTGCCAAATTCCCTTGCCATCCCCTTCTTAACTCCAAGCTCTTCCTGTGGCGAGGCGACTCTTGGGTTCTCTCTGTTGATGCAGTTGTTAACTCTTCCAATGAGACTCTTGGTGTGAAGGAAAGTAGCCCTGGGCTGCATAATGCAGCTGGGCCTAGGCTTGCTGAGGAATGTGCAGCTCTGGGTGGATGTAGAACTGGGATGGTTCAAATAACTGGTGCCTATGAGTTGCCTTCAAGGAAGGTTATACACACTGTTGGACCAAAATATGTTGAAAAGTACCATACAGCTGTTGAAAGTGCTTTGAGCCGCTGCTATCAGTCATGTTTTGAGCTG---CTAGTTGAAAATGGCCTTCAAAGTATTGCTCTTGGATGCATCTACACAGAGGCTAAAGAATATCCACGGGAACAAGCAGCACACGTCGCCTTACGTACTCTGCGGCGTTTCTTGGAGAAACATAACGACAGAATTGATGCAGTGGTTTTATGCTTTTCAACAGAAATGGATATAGAAATATACGAAAGACTATTACGCCTGTACTTTCCTAGAAATATAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTGGGTGATGAGAATGGGGATACTATCATAGATGAGCGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTAATGCAGATGCTGAGGCAAGGTCCCCCACAACC---ACAAGCACAGTTCATGAATCTACATCCAGCAGGGCTAAG---------------------------------------------------TATGAGGGACCTTCTCTTGATTCTACATTCCTTATCATGACCGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGTGCTGGAAAGGCGCATGCTGATTGGGTTTGGTCAAAATGGCTAGGTCATGAGAAACATGCCGATGGATTGGATACC---------------TCATTC---CACCACAGATACTTAGCAAGGGCAAAGGCAGTCGATCTATCAAAAGCTGCAGAAATGAAAATTTTGTATCGTGGTGGAGTTGACTGTGAGGGGCATCGTGTAATGGTTATAATTGGAGCACATTTCTTGCTTCGATGCCTTGATTTGGAACAGTTCCTTTTATATGTTGTGAAGGAGTTTGAACCTGTGAGTAAAGAACCTTATAGTGTTGTGTATTTTCATTCAGCTGCCGCATTACATATTGTACCAGATTTTCAGTGGGTGAAGCATTTACACCAAATCATGGGACCAAGACATAAGGCTAATCTACGAAGACTCTACATGGTACATCCCACCTTGGGATTGAAAACTAGTGTAGTATTACTGAGGCTACTTGCAGATCCACAGGTTTGGACCAAGGTGACATATATTCACAGGTTATCTGATTTGTTT---AGATACGTACCACAAAAGCAGCTCACAATC------CCCGATTTCGTTTTCCAGCATGACATGGATGCGCGTGGTGGTTCTCAAAAGCAATCGGATTAG--------------------------------------------- Polypodium_hesperium_B_IXLH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCTCAAATAACTGGTGCCTATGAGTTGCCTTCAAGGAAGGTTATACACACTGTTGGACCAAAATATGTTGAAAAGTACCATACAGCTGTTGAAAGTGCTTTGAGCCGCTGCTATCAGTCATGTTTTGAGCTG---CTAGTTGAAAATGGCCTTCAAAGTATTGCTCTTGGATGCATCTACACAGAGGCTAAAGAATATCCGCGGGAACAAGCAGCACATGTCGCCTTACGTACTCTGCGGCGTTTCTTGGAGAAGCATAAGGACAGAATTGATGCAGTGGTTTTGTGCTTTTCAACAGAAACGGATATAGAAATTTACGAAAGACTATTACGCCTGTACTTTCCTAGAAATATAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTGGGTGATGAGAATGGGGATACTATCATAGATGAGCGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTAATGCAGATGCTGAGGCAAGGTCCCCCACAACC---ACAAGCACAGTTCATGAATCTACATCCAGCAGGGCTAAG---------------------------------------------------TACGAGGGACCTTCACTTGATTCTACATTCCTTATCATGACCGAAGATCCAGATCGAAGGCGTGAAGAGCAGTGGCAAAGTGCTGGAAAGGCGCATGCTGATTGGGTTTGGTCAAAATGGCTAGGTCATGAGAAACATGCCGATGGATTGGATACC---------------TCATTC---CACCACAGATACTTAGCAAGGGCAAAGGCAGTCGACCTATCAGAAGCTGCAGAAATGAAAATTTTGTATCGTGGTGGAGTTGACTGTGAGGGGCATCGTGTAATGGTTATAGTTGGAGCACATTTCTTGCTTCGATGCCTTGATTTGGAACAGTTCCTTTTATATGTTGTGAAGGAGTTTGAACCTGTGAGTAAAGAACCTTACAGTGTTGTGTATTTTCATTCAGCTGCCGCGTTACATATTGTACCAGATTTTCAGTGGGTGAAGCATGTACACCAAATCATGGGACCAAGACATAAAGCTAATCTACGAAGACTCTACATGGTACACCCCACCTTGGGATTGAAAGCTAGTGTAGTATTACTGAGGCTACTTGCAGACCCACAGGTTTGGACCAAGGTGACATATATTCACAGGTTATCTGATTTGTTT---AGATATGTACCACAAAATCAGCTCACAATC------CCCGATTTCGTTTTCCAGCATGACATGGATGCGCGTGGTGGTTCTCAAAAGCAATCGGATTAG--------------------------------------------- Polypodium_hesperium_GYFU ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCAAATAACTGGTGCCTATGAGTTGCCTTCAAGGAAGGTTATACACACTGTTGGACCAAAATATGTTGAAAAGTACCATACAGCTGTTGAAAGTGCTTTGAGCCGCTGCTATCAGTCATGTTTTGAGCTG---CTAGTTGAAAATGGCCTTCAAAGTATTGCTCTTGGATGCATCTACACAGAGGCTAAAGAATATCCACGGGAACAAGCAGCACACGTCGCCTTACGTACTCTGCGGCGTTTCTTGGAGAAACATAACGACAGAATTGATGCAGTGGTTTTATGCTTTTCAACAGAAATGGATATAGAAATATACGAAAGACTATTACGCCTGTACTTTCCTAGAAATATAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTGGGTGATGAGAATGGGGATACTATCATAGATGAGCGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTAATGCAGATGCTGAGGCAAGGTCCCCCACAACC---------------------------------------------------------------------------------------------TATGAGGGACCTTCACTTGATTCTACATTCCTTATCATGACCGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGTGCTGGAAAGGCGCATGCTGATTGGGTTTGGTCAAAATGGCTAGGTCATGAGAAACATGCCGATGAATTGGATACC---------------TCATTCCACCACAACAGATACTTAGCAAGGGCAAAGGCAGTCGACCTATCAAAAGCTGCAGAAATGAAAGTTTTGTATCGTGGTGGAGTTGACTGTGAGGGGCATCGTGTAATGGTTATAGTTGGAGCACATTTCTTGCTTCGATGCCTTGATTTGGAACAGTTCCTTTTATATGTTGTGAAGGAGTTTGAACCTGTGAGTAAAGAACCTTACAGTGTTGTGTATTTTCATTCAGCTGCCGCGTTACATATTGTACCAGATTTTCAGTGGGTGAAGCATTTACACCAAATCATGGGACCGAGACATAAGGCTAATCTACGAAGACTCTACATGGTACATCCCACCTTGGGATTGAAAACTAGTGTAGTATTACTGAGGCTACTTGCAGATCCACAGGTTTGGACCAAGGTGACATATATTCACAGGTTATCTGATTTGTTT---AGATACGTACCACAAAATCAGCTCACAATC------CCCGATTTCGTTTTCCAGCATGACATGGATGCGCGTGGTGGTTCTCAAAAGCAATCGGATTAG????????????????????????????????????????????? Polystichum_acrostichoides_FQGQ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACTCCTGTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTCGGTGATGAAAATGGAGAGACCATCATAGATGAACGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAAATCCCCCATATCC---AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTAATTGGAGCACATTTTTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTTTATACGTTGTGAAGGAGTTTGAACCTTTGATTAAAGAACGTTACAGTGTTGTGTATTTTCATTCTGCCGCAGCGTTACATTTTGTTCCAGATACCCGATGGGTGAAACATATACACCAAATCATGGGACCAAGACACAAGGCTAATCTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pteridium_aquilinum ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACCAGCAAATGTTGGTGATGAAAATGGAGAGACTATCATAGATGAACGTAAGATCAGAATAAAAGCACTTCCCGTTGTTTCTGATCCAGATGCTGAGCCAAAATCCCATGTAACC---ACAAATACAGCTCACCCAGTCACATCCAACGGGATCAGG---------------------------------------------------TCCAATGGGTCTTTGCTCGATTCTTCTTTTCTTTTCATGACTGAAGATCCAGATAGGAGACGTRAAGAGCAGTGGGAAAGAGYTGSMMAGGCACAKGCWGGYTGGWYWTGGSCRAAWTGGMYKGGYYWWGGK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pteris_ensiformis_FLTD --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTCAAAAACTGCAGAAATGAAGATACTGTACCATGGTGGAGTTGATTACGAAGGGCATCGAGTAATGATTGTGGTTGGGGCACATTTCTTGTTGCGATGCCTTGATTTGGAGCAATTTCTCCTTTATGTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pteris_vittata_POPJ GCAGAAAGAATGGAGAGGAACACGAAGCGGAGCAACAGCGCGGTGACGCTGGATCAGGTGCCTGCTTGGAGCGACCTAGAGCTGTTTCCCACGCCC------------------------------------CCCCCCCTCCAGAGC---------CGCCTGGGAGGAGGGGCCTTTGCAGACCCTCTCCTTTCGCCCCCCCGTCCC------TCCCTTTCCAATTTCGCCTGCGACTCTCAACTCAACTCTAAACTCTTCATCTGGCATGGTGACCCTTGGGTCCTCCTGGTTGATGCAATCGTTAACTCTTCTGATGAGGATCTTAATGTGAAGGACAGCAGCCCTCACCTACATACGGCTTCTGGGCCTAGGCTTGCCGAGGAATGTACGAGTCTGGGTGGATGTAGAACTGGGATGGCACAAATCACTGGGGCCTATGACTTGCCTGCAAGAAGGGTCATACATACTGTTGGACCAAAATATGTAGACAAGTACCATACAGCTGCTGAGAATGCTTTAATTCGCTGTTATCAATCATGTCTTGAGCTG---CTACTCGAACACAACCTAAAAAGTATTGCTGTTGGATGCATCTATGAGGAGTCCAAGGGTTATCCGCGTAAACAGGGAGCACATGTGGCCCTGCGTACTCTACGGCATTTTTTGGATAAATACAACGACAGGATCAGTGCAGTTGTTTTATGCTTTTCAGCAGTTTCAGATCTAGAAATCTATGAGAAACTATTACTCTTCTATTTTCCTAGAAATAGAATAGAAGAGCATAACGCTTTGCTGACTTTACCTGCAAATGTTGGTGATGAAAATGGAGAGACTATCATAGATGAACGTAAGATCAGAATAAAAGAACTTCCGGTTGTTTCTGATGCAGATGCTGAGCGAATATCCTCCATGCCC---AAAGATACAAGTGACCCTTTGATATCTAGAAGG---------------------------------------------------------CTCAAGGGATCTTCGCTCGATTCTTCTTTTCTTTGCATGACTGAGGATCCTGATGAAAGACGTGAGCAGCAATGGGAAAGAGCACGCAAGCCGCAAGCTGGTTGGTTGTGGTCAAAATGGACAGGTCAAGGT---CTTGCTGGCCACCCAGATAGC---------------TCCTTT---TACTTCAGATACTTAGCAAGGGCAAAAGCTGTTGACCTCTCGAAAACTGCTGAAATGAAGATTCTGTGTCCTGGTGGAGTTGATTACGAGGGGCATCGAGTTATGGTTGTGGTTGGAGCACATTTTTTGTTGCGATGCCTTGATTTGGAGCATTTTCTTCTTCATGTTGTCAAGGAATTTGAAACTTTGGTTAGAGAAGGTTACAGCATTGTATATTTCCATGCTGCTGCAGGATTAAATATTGTCCCAGATATTGCATGGGTGAAGCATATACATCATATCATGGGACCCAGACATAAGGCGAACTTACATAGAATATACATGGTACACCCCACGTTGGGGCTAAAAGCTACTGTATTGCTGCTGAGGCTACTCGCAGATTCACAGGTTTGGGCAAAGGTGGAATACATGGACAATCTATCTGAATTGTTT---CGATCTGTAGCCCAAGACCAGCTAACAATT------CCTGAGTTTGTTTTCCAGCATGACAGGGATCTGCTTAGTGGTCCGCAATAG--------------------------------------------------------- Thelypteris_acuminata_MROH ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGACCCTTGGCTCCTCACTGTTGATGCAGTCGTCAACTCTTCTAATGAGACTCTTGATGTGAAGGAAAGTAGCCCTGGCTTGCATGCGGCAGCTGGGCCTAGGCTTGCTGAGGAATGTGCAGGTCTGGGTGGATGTAGAACGGGGATGGCTCAAATAACGGGGGCCTATGAATTGCCTTCAAGGAGGGTTATAC-----------------------------------------------------------------------------------------CTAATCGAAAATGACCTTCAAAGTATTGCGCTTGGATGCATCTACGCAGAGTCTAAAGAATATCCGCGTGAACAAGCAGCACATGTTGCCTTACGTACTTTGCGGCGCTTCTTGGAAAAACACAAGGACAGAATTAATGCAGTGGTTTTATGCT--------------GATATAGAAATATATGAGAGACTATTACTCCTGTACTTTCCTAGAAATAGAATAGAACAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAAAACGGAGAGACTATCATAGATGAACGTAAGATCAGAATAAAAGCCCTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAAATACCCTATATCC---ACAAACACA??-CATGCATTTACATCCAGCAGGATCAGC---------------------------------------------------TCCAAGGAATCTTCGCTCGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGGTGCATGCTGGTTGGTTCTGGTCAAAATGGCTAGGTCATGAGATTAGTTCCAATGGATGGGATACC---------------TCATTC---CACAACCGATATTTAGCAAGGGCAAAGGCAGTTGACCTATCCGAAGCTGCGGAAATGAAAATTTTGTATCATGGTGGAGTTGACTGCGAGGGGCATCGAGTAATGGTTGTAATTGGAGCACATTTCTTGCTGCGATGTCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTTGAACCTTTGATTAAAGAACCTTACAGTGTTGTGTATTTTCATTCTGCGGCAGCATTACACTTTGTTCCCGACACCCGATGGGTGAAGCATATACACCAAATCATGGGACCAAGGCATAAGGCCAATTTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTCCTGTTACTGAGGTTACTTGCAGACTCACAGGTTTGGGCGAAGGTGGCATATATGGACAGGTTATCTGATTTGTTT---AGATATGTACCACAAGATCAGCTAACAATC------CCTGATTTTGTTTTCCAGCATGACATGGATGTGCATGGTGGTTCTCAGTAG--------------------------------------------------------- Thyrsopteris_elegans_EWXK ------------------------------------------------------------------TGGAGCGATGTGGAGGTGTATCCCACGCCG------------------------------------CCGCACATTCTTGCACTTGCGGGCGGAGGACGGCTGGGGCCTTTCGTTGACCCCCTCATCTCACCCACACACCCC---TCCTCGCCGGCCAAGTTCCCCATAGACCACCATCTCAACTCCAAGCTCTACCTCTGGCGAGGCGACCCTTGGAACCTCAACGTCGATGCGGTCGTCAACTCTTCCAATGAGACACTTGATGTTAAGGAAAGTAGCCCAGGGTTACACGCTGCAGCTGGGCCCAGGCTTGCTGAGGAATGTGCGGGTTCGGGTGGATGTAGAACCGGGATGGCACAAATCACAGGCGCTCATGAATTACCTGCAAGGAGGGTCATACATACGGTTGGGCCAAAATATGTAGAAAGGTAC---------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTGCGACGCCTCTTGGAGAAACACAAGGAAAAAATTAGCGCCGTGGTCTTATGCTCTTTAGCAGCTTTGGACATAGAAACATATGAAAG-------CTCCTCTACTTTCCTAGAAATAAAGCTGAAGAGCATAACGCGTTGCTGAATTTACCAGCAGATGTCGGAGATGAAAATGGAGAGACTATCATATATGAACGTAAGATTAGAATAAAAGCACTTCCAGGGGTTTCTGATCCGGCTACCGAGCCAAAGTCGCCTGTTTCC---AAGAATACAATCCAGCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGATATTGTATCATGGTGGAGTTGACAATGAGGGACACCCGGTTATGGTAGTGGTGGGAGCTCATTTTTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTTTATGTCGTAAAGGAATTTGAAACTTTGATTTACAAACCCTATAGTGTCGTGTATTTTCACTCTGCAGCAGCACTGCAATTTGTTCCGGACATTCGATGGATGAAGCGTATACACCAGATCATGGGACCTAAACATAAGGGTAATTTACATAGAATTTACATGGTACACCCCACTCTGGGTTTGAAAGCCAGTGTACTCTTATTGAGGTTATTTGTGGACTCAGAGGTTTGGGCAAAGGTGGCATATGTGGACAACCTGCCCGACTTGTTC---AAATATGTTTCGCAAGATCAGCTAACAATC------CCAGACTTCATTTTCCAGCATGATGTGGACGTGCATGGCAGTCCTCTCACCAGCACTTAG------------------------------------------------ Woodsia_ilvensis_YQEC ---TTGATGGAGTCGAAGAGGACGAAGCAGAGCAACAGCGCGGTGACGTTGGATCAGGTACCCGCTTGGAACGACTTGGAGGTGTTTCCCACGCCGCCCTTGATTTGC------------------------CGAGCACGAGCTGATGCTGATAATGGAGGAGGAGGAGGGCCCTTTGCAGACCCTCTCATCTCTCCTTCCTCT------TCCTCCCCTTCCAAATTCCCCTGCCTCCCCCTTCTCAACTCCAAGCTCTTCCTTTGGCGCGGCGACCCTTGGCTCCTCACTGTCGATGCAGTTGTCAACTCTTCTAATGAGACTCTGGCTGTGAAGGAAAGTAGCCCTGGGCTGCATGCGGCATCCGGGCCTAGACTTGCTGAGGAATGTGCAGGTCTGGGTGGATGTAGAACAGGGATGGCTCAAATAACTGGGGCCTATGAATTGCCTTCAAGGAGGGTTATACACACTGTTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCAAGGGATCTTCGCTCGATTCGTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAGCAGTGGCAAAGAGCTGGAAAGGCGCATGCTAGTTGGTTTTGGTCAAAATGGCTAGGTCATGAGAGTCGTGCCAATGGATTGGATACT---------------TCATTC---CACAACAGATTCCTGGCCAGGGCAAAGGCAGTTGACCTATCCGAAGCTGCGGAAATGAAAATTTTGTATCCTGGTGGAGTTGACTGCGAGGGGCATCGAGTAATGGTTGTAATTGGAGCACATTTCTTGCTGCGATGCCTTGATTTGGAACAGTTCCTTCTATATGTTGTGAAGGAGTTTGAACCTTTGATTAAGGAACCTTACTGTGTTGTGTATTTTCACTCTGCCGCAGCATTACATTTTGTTCCAGATACCCGATGGGTGAAGCATATACACCAAATCATGGGACCGAGGCATAAGGCTAATTTACATAGACTCTACATGGTACACCCCACCTTGGGTTTGAAAGCTAGTGTACTGTTACTGAGGGTACTTGCAGACTCACAGGTTTGGGCAAAGGTGGCATATATGGACAGGTTATCTGATTTGTTT---AGATACGTACGACAAGATCAGCTAACAATC------CCGGATTTTGTTTTCCAGCATGACATGGATGTGCATGGTGGTGCTCAGTAG--------------------------------------------------------- Woodsia_scopulina_YJJY AGGATGATGGAGTCGAAGAGGACGAAGCGGAGCAACAGCGCGGTGACGTTGGATCAGGTACCCGCTTGGAGCGACTTGGAGGTGTTTCCCACGCCCTTG---------------------------------ACTTGCCGAGCACGAGCTGACGAT---------------------GCAGACCCTCTCATCTCTCCCTCCTCT------TCCTCCCCTTCCACATTCCCCTGCCTCCCCCTTCTCAACTCCAAGCTCTTCCTTTGGCGCGGCGACCCTTGGCTCCTCACCGTCGACGCAGTTGTCAACTCTTCTAATGAGACTCTTGCTGTGAAGGAAAGTAGCCCTGGGCTGCATGCGGCATCTGGGCC----------------------------------------------ATGGCTCAAATAACTGGGGCCTATGAATTGCCTTCAAGGAGGGTTATACACACTGTTGGACCAAAATATGTAGAAAAGTATCATACAGCTGCTGAAAATGCTTTGAGTCGCTGCTATCAGTCATGCCTTGAGCTC---CTAATTGAAAATGACCTTCAAAGTATTGCGCTTGGATGCATCTACAAAGAGTCTAAAGAATATCCGCGTGAACAAGCAGCACATGTTGCCTTACGTACTTTGCGGCGCTTCTTGGAGAAACACGAGGACAGAGTTAATGCAGTGGTTTTATGCTTTTCAGCAGATATGGATATAGAAATATATGAAAAACTATTACTCCTGTACTTTCCTAGAAATAGAATAGAAGAGCATAACGCATTGCTGAATTTACCAGCAGATGTTGGTGATGAATATGGAGAGACTATCATAGATGAACGTAAGATCAGAATAAAAGCACTTCCGGTTGTTTCTGATGCAGATGCTGAGCCAAAATCCGCTATATCC---ACGAACATAGTTCATGCGTCTACATCTAGCAGC---------------------------------------------------------TCCAAGAGATCTTCACTCGATTCTTCATTTCTTGTCATGACTGAAGATCCAGATCGGAGGCGTGAAGAACAGTGGCAAAGAGCTGGAAAGGCGCATGCTAGTTGGTTTTGGTCAAAATGGCTAGGTCATGAGGGGCGTGCCAATGGATTGGATACC---------------TCATTC---CACAACAGATTCCTGGCCAGGGCAAAGGCAGTTGACCTATCCGAAGCTGCGGAAATGAAAATTTTGTATCGCGGAGGAGTTGACTGCGAGGGGCATCGAGTAATGGTTGTAATTGGAGCACATTTCTTACTGCGGTGCCTTGATTTGGAGCAGTTCCTTCTATATGTTGTGAAGGAGTTTGAACCTTTGATTAAAGAACCTTACAGTGTTGTGTATTTTCATTCTGCCGCAGCATTACATTTTGTTCCAGATACCCAATGGGTGAAGCATATACACCAAATCATGGGACCGAGGCATAAGGCTAATTTACATAGACTCTACATGGTACACCCCACTTTGGGTTTGAAAGCCA-------------GAGGGTACTTGCAGACTCACAGGTTTGGGCAAAGGTGGCATATATGGACAGGTTATCTGACTTGTTT---AGATATGTGCGACAAGATCAGCTAACAATT------CCGGATTTTGTTTTCCAGCATGACATGGAACTTGGA------------TGA????????????????????????????????????????????????????????? ; END; BEGIN TREES; Title ApPEPFP_B; LINK Taxa = Taxa; TRANSLATE 1 Adiantum_aleuticum_WCLG, 2 Adiantum_raddianum_BMJR, 3 Alsophila_spinulosa_GANB, 4 Asplenium_platyneuron_KJZG, 5 Athyrium_filixfemina_URCP, 6 Athyrium_sp_AFPO, 7 Blechnum_spicant_VITX, 8 Bolbitis_repanda_JBLI, 9 Cryptogramma_acrostichoides_WQML, 10 Culcita_macrocarpa_PNZO, 11 Cystopteris_fragilis_LHLE, 12 Cystopteris_protrusa_YOWV, 13 Cystopteris_reevesiana_RICC, 14 Cystopteris_sp_XXHP, 15 Cystopteris_utahensis_HNDZ, 16 Davallia_fejeensis_OQWW, 17 Dennstaedtia_davallioides_MTGC, 18 Deparia_lobatocrenata_FCHS, 19 Didymochlaena_truncatula_RFRB, 20 Diplazium_wichurae_UFJN, 21 Dipteris_conjugata_MEKP, 22 Equisetum_diffusum_CAPN, 23 Equisetum_hyemale_JVSZ, 24 Gaga_arizonica_DCDT, 25 Gymnocarpium_dryopteris_HEGQ, 26 Homalosorus_pycnocarpos_OCZL, 27 Leucostegia_immersa_WGTU, 28 Lindsaea_linearis_NOKI, 29 Lindsaea_microphylla_YIXP, 30 Lygodium_japonicum_PBUU, 31 Myriopteris_rufa_GSXD, 32 Nephrolepis_exaltata_NWWI, 33 Notholaena_montieliae_YCKE, 34 Onoclea_sensibilis_HTFH, 35 Phlebodium_pseudoaureum_ZQYU, 36 Phymatosorus_grossus_ORJE, 37 Pilularia_globulifera_KIIX, 38 Pityrogramma_trifoliata_UJTT, 39 Plagiogyria_japonica_UWOD, 40 Pleopeltis_polypodioides_UJWU, 41 Polypodium_amorphum_YLJA, 42 Polypodium_glycyrrhiza_CJNT, 43 Polypodium_hesperium_B_IXLH, 44 Polypodium_hesperium_GYFU, 45 Polystichum_acrostichoides_FQGQ, 46 Pteridium_aquilinum_, 47 Pteris_ensiformis_FLTD, 48 Pteris_vittata_POPJ, 49 Thelypteris_acuminata_MROH, 50 Thyrsopteris_elegans_EWXK, 51 Woodsia_ilvensis_YQEC, 52 Woodsia_scopulina_YJJY; TREE ApPEPFP_B_bestREP3 = (((((45:0.01540636,27:0.07664181):0.00233409,((16:0.06789316,((36:0.04098262,35:0.02973926):0.00504683,(((44:0.00363699,42:0.00566299):0.00747161,(41:0.00180608,43:0.00135232):0.00514684):0.00671668,40:0.06753082):0.00260923):0.05227892):0.01988236,19:0.03435918):0.00319823):0.00246543,32:0.07448128):0.00378915,8:0.0834615):0.00813295,((((((5:0.00131985,6:0.0029124):0.0120229,(20:0.01671791,7:0.02682955):8.3019E-4):0.0026234,18:0.01820692):5.7205E-4,(52:0.02557038,51:0.01202282):0.01125614):0.00153235,((26:0.01173595,(25:0.01661179,(34:0.01559414,((15:0.00381435,(13:0.0033741,11:0.01063849):0.00116664):0.00188828,(12:0.00373034,14:1.0E-8):0.00248357):0.00995101):0.00403663):0.00476694):1.0E-8,4:0.16521568):0.00171796):0.00350134,49:0.02650535):0.00598653,(((17:0.04347981,46:0.02229171):0.04398379,((((38:0.12928409,48:0.0622329):0.01503507,47:0.05516044):0.02508221,9:0.06909534):0.00977515,((31:0.04318967,(33:0.04603984,24:0.03694675):0.02574307):0.02225673,(2:0.10846325,1:0.03985751):0.0257071):0.01951412):0.09453148):0.00487165,((29:1.0E-8,28:0.00219179):0.28359032,((3:0.05047438,(50:0.02407948,(10:0.04345581,39:0.01948758):0.04700988):0.02073868):0.02736477,(((23:0.03768224,22:0.03998816):0.49448449,(21:0.17194984,30:0.24393518):0.01203115):0.14926091,37:0.3285356):0.04062405):0.07862904):0.03768664):0.04221817); END; begin sets; charset exclude = 1 - 21 97 - 162 205 - 210 919 - 921 961 - 1011 1168 - 1182 1189 - 1191 1624 - 1626 1657 - 1662 1711 - 1770; charset nonCoding = 919 - 921 1189 - 1191; charset codonPos1 = 1 - 916 \ 3 922 - 1186 \ 3 1192 - 1768 \ 3; charset codonPos2 = 2 - 917 \ 3 923 - 1187 \ 3 1193 - 1769 \ 3; charset codonPos3 = 3 - 918 \ 3 924 - 1188 \ 3 1194 - 1770 \ 3; end; begin mrbayes; set autoclose = no nowarn = yes; exclude 1 - 21 97 - 162 205 - 210 919 - 921 961 - 1011 1168 - 1182 1189 - 1191 1624 - 1626 1657 - 1662 1711 - 1770; charset nonCoding = 919 - 921 1189 - 1191; charset codonPos1 = 1 - 916 \ 3 922 - 1186 \ 3 1192 - 1768 \ 3; charset codonPos2 = 2 - 917 \ 3 923 - 1187 \ 3 1193 - 1769 \ 3; charset codonPos3 = 3 - 918 \ 3 924 - 1188 \ 3 1194 - 1770 \ 3; partition currentPartition = 4 : nonCoding , codonPos1 , codonPos2 , codonPos3; set partition = currentPartition; lset applyto = ( 1 , 2 , 3 , 4 ); lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; mcmc; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1770; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1770; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1770; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1430009239023; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4213131634938195243; tell It; setDefaultOrder 6 0 49 23 31 9 32 22 7 51 19 36 20 34 18 27 44 15 28 29 43 39 40 3 17 26 33 45 46 47 2 25 8 21 38 14 42 5 50 30 12 10 13 11 16 41 1 4 24 48 37 35; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 944381586148737439; checksumv 0 2 4280942563 null getNumChars 1770 numChars 1770 getNumTaxa 52 numTaxa 52 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 1227071.0 sumSquares -5.072854620270065E19 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 716; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4213131634938195243 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1142.1430009158827.6708588504705371486; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 649; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((23:0.03768224,22:0.03998816):0.247242245,((21:0.17194984,30:0.24393518):0.01203115,(37:0.3285356,((3:0.05047438,(50:0.02407948,(10:0.04345581,39:0.01948758):0.04700988):0.02073868):0.02736477,((29:1.0E-8,28:0.00219179):0.28359032,(((17:0.04347981,46:0.02229171):0.04398379,((((38:0.12928409,48:0.0622329):0.01503507,47:0.05516044):0.02508221,9:0.06909534):0.00977515,((31:0.04318967,(33:0.04603984,24:0.03694675):0.02574307):0.02225673,(2:0.10846325,1:0.03985751):0.0257071):0.01951412):0.09453148):0.00487165,(((((45:0.01540636,27:0.07664181):0.00233409,((16:0.06789316,((36:0.04098262,35:0.02973926):0.00504683,(((44:0.00363699,42:0.00566299):0.00747161,(41:0.00180608,43:0.00135232):0.00514684):0.00671668,40:0.06753082):0.00260923):0.05227892):0.01988236,19:0.03435918):0.00319823):0.00246543,32:0.07448128):0.00378915,8:0.0834615):0.00813295,((((((5:0.00131985,6:0.0029124):0.0120229,(20:0.01671791,7:0.02682955):8.3019E-4):0.0026234,18:0.01820692):5.7205E-4,(52:0.02557038,51:0.01202282):0.01125614):0.00153235,((26:0.01173595,(25:0.01661179,(34:0.01559414,((15:0.00381435,(13:0.0033741,11:0.01063849):0.00116664):0.00188828,(12:0.00373034,14:1.0E-8):0.00248357):0.00995101):0.00403663):0.00476694):1.0E-8,4:0.16521568):0.00171796):0.00350134,49:0.02650535):0.00598653):0.04221817):0.03768664):0.07862904):0.04062405):0.14926091):0.247242245);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #944381586148737439 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 649; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; endTell; setActive; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;