#NEXUS [written Sat Apr 25 20:50:09 EDT 2015 by Mesquite version 2.75 (build 566) at Macintosh-99.local/10.0.1.3] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=79; TAXLABELS Adiantum_aleuticum_WCLG Adiantum_raddianum_BMJR Alsophila_spinulosa_GANB Amborella_trichopoda_scaffold00098.21 Anemia_tomentosa_CQPW Angiopteris_evecta_NHCM Aquilegia_coerula_Aquca_00011.1 Arabidopsis_thaliana_gDNA_AT1G75980 Argyrochosma_nivea_XDDT Asplenium_nidus_PSKY Asplenium_platyneuron_KJZG Athyrium_filixfemina_URCP Athyrium_sp_AFPO Azolla_caroliniana_cf_CVEG Blechnum_spicant_VITX Bolbitis_repanda_JBLI Botrypus_virginianus_BEGM Crepidomanes_venosum_TWFZ Cryptogramma_acrostichoides_WQML Cryptomeria_japonica_DSXO Culcita_macrocarpa_PNZO Cystopteris_fragilis_LHLE Cystopteris_protrusa_YOWV Cystopteris_reevesiana_RICC Cystopteris_sp_XXHP Cystopteris_utahensis_HNDZ Davallia_fejeensis_OQWW Dennstaedtia_davallioides_MTGC Deparia_lobatocrenata_FCHS Didymochlaena_truncatula_RFRB Diplazium_wichurae_UFJN Dipteris_conjugata_MEKP Equisetum_diffusum_CAPN Equisetum_hyemale_JVSZ Gaga_arizonica_DCDT Ginkgo_biloba_SGTW Gymnocarpium_dryopteris_HEGQ Homalosorus_pycnocarpos_OCZL Hymenophyllum_bivalve_QIAD Leucostegia_immersa_WGTU Lindsaea_linearis_NOKI Lindsaea_microphylla_YIXP Lygodium_japonicum_PBUU Myriopteris_rufa_GSXD Nephrolepis_exaltata_NWWI Notholaena_montieliae_YCKE Nuphar_advena_WTKZ Onoclea_sensibilis_HTFH Ophioglossum_petiolatum_WTJG Ophioglossum_sp_QHVS Osmunda_javanica_VIBO Osmunda_sp_UOMY Parahemionitis_cordata_ZXJO Peperomia_fraseri_XSZI Phlebodium_pseudoaureum_ZQYU Phymatosorus_grossus_ORJE Pilularia_globulifera_KIIX Pityrogramma_trifoliata_UJTT Plagiogyria_japonica_UWOD Pleopeltis_polypodioides_UJWU Polypodium_amorphum_YLJA Polypodium_glycyrrhiza_CJNT Polypodium_hesperium_B_IXLH Polypodium_hesperium_GYFU Polystichum_acrostichoides_FQGQ Psilotum_nudum_QVMR Pteridium_aquilinum_Pt_Contig6688 Pteris_ensiformis_FLTD Pteris_vittata_POPJ Sceptridium_dissectum_EEAQ Sticherus_lobatus_XDVM Thelypteris_acuminata_MROH Thyrsopteris_elegans_EWXK Tmesipteris_parva_ALVQ Vittaria_appalachiana_NDUV Vittaria_lineata_SKYV Woodsia_ilvensis_YQEC Woodsia_scopulina_YJJY Zea_mays_GRMZM2G074414_T01 ; END; BEGIN CHARACTERS; TITLE Gclev; DIMENSIONS NCHAR=663; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Adiantum_aleuticum_WCLG CTCTACCCTGCAGCGCAA---------------------GATCTT---ACGTCTCGCCCCCCTCAAGCCATCCATTCTAATTACGCTCATTTTTTTGCAGTCGACTTTATGAAGGACAACCATGATCAATACATATACCGGCACAATAATGGTCTTTGCATTATAGGCCTGGCTCCTACTCACATTGCTCTG---GGTAATGATGCCGTGGTCACTGCCGTGGATTTTAATGTCGGTAAACAGAACCGAGCTGAAATGAAGGTTTCTGGAAAGCGCAAGAATGATGCCCATGTGCTGGAGCCTACATCAGCGTTATGCAAAGTGGTCTCT---AATGATGCAACATACATAGTCAGGTGTTGTGTAAGGGGCGCTTTGCTAGAAGTGAACGAGCGTCTAATTAAGGAGCCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Adiantum_raddianum_BMJR CTCTACCCTACAGCGGAA---------------------GATCTT---CCGCCTCGACCTCCTCAAGCCATCCATCTTAATTACGCTCATTTTTTTGCAGTGGACTTTATGAAGGACAACCATGATCAATACATATACCGGCACAATAATGGCCTTTGCGTTATAGGCCTGGCTCCTACTCACGTTGCTCTG---GGTAATGATGCGGTGGTTACTGCCGTGGATTTTAATGTTGGGAAACAGAGCCGAGCTGAAATGAAGGTTTCTGGAAAGCGCAAGAATGACGCCCGCGTGCTGGAGCCCACATCAGCGTTGTGCAAAGTGGTCTGT---AATGATGCAACATACATAGTCAGATGTTGTGTAAGAGGGGCGTTGCTAGAAGTGAATGAGCGACTAATAAAGGAGCCTACGTTACTTAAAACTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Alsophila_spinulosa_GANB ----------------------------------------------------------------------------------------------------------------------------------------------------------------TTATAGGATTGGCTCCAACCCATATTGCGCTA---GATACCAATGCTTCAATAACTGCGGTGGATTTCAATGTGGGAAAGCAAAGCCGGGCTGAAATGAAGGCCACAGGAAAGCACAAGAATGATGCACGTGTGCTGGAGCCTTCTTCTGCACTGTGTAAAGTTGTTTCA---AATGACGTGACGTACATCATCAGATGTTGTGTAAGGGGGGCTCTTTTGGAAGTCAATGAGCGCCTTATTAAGGAGCCCTCTCTTCTTAAAACTAAGGCAGCTAGTGAAGGTTATATAGCCATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Amborella_trichopoda_scaffold00098.21 CTTCTTCCAGATCCCAAT---------------------CTTCTCATTCTCTCTCCTCCCCCTTCCGCTGTCGACTCCAACTATGTCCACTACTTCATCGCCGATTTTCTCAAGCCAGGGCACGATCAGTACATCTATCGTCATGCCAATGGGTTGTGTGTCATTGGATTGGCTCCGACTCATGCCTCCCTC------TCGGAAGGAGGAGTGACTTCAGTCGATTTCAATGTTGGCAAGTCTGATCGAAGCGAAATCAAAGTAACAGGAAAGCGTAAGAAGAATGCACAACTTCTGGAGCCCAACTCAGCTTTATGCAAAGTTTACGCT---AGTGATAATATTTACATTGCAAGGTGCTGTATAAAGGGGTCTCTTCTCGAAGTAAATAATAGGCTAATTAAGGAACCTGGATTACTCAACAGCTCT---------------------------------------------------------------------------------------------------------------ACCCCCAGACAGCCAACTGGAGATATTTGA--------------------------------------------------------------------------------------------- Anemia_tomentosa_CQPW ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGATTAGCCCCAACTCACATAGCACTG---GACAGCAGCTCTCCAATAACTGCCATTGATTTCAACGTGGGAAAGCAAAGCCGCACAGACATGAGAGCAACAGGCAAGCGCAAAAATGATGCTCGCATTTTGGAACCCAACTCAGCATTGTGTAAAGTCATCACC---AAGAATGCAACCTATGTTATCAGATGCTGCGTTAAGGGGGCGCTTTTGGAAGTGAACGAACGCCTGGTGAAAGATCCATTGTTACTCCAATTGAAGCCTGCTTCTGAAGGATATGTGGCAATTATGATGCCGAGGCAGGACGATTGGAAGAAAGCTTCATTGACATATTTGAGCAGCATTGAGTAC---AAAGACCGCCAGCTGAGTAAAACAGAGCCAACTAAAAATCAAGGGTCTGAGAATATTTGA--------------------------------------------------------------------------------- Angiopteris_evecta_NHCM ------------------------------------------------------------------------------------------------------------------GAGAGACACGATCAGTATATCTATCGGCATGCAAATGGTTTGTGTGTGATTGGGTTAGCCCCGACACACATTGCATTT---GAGAGTGGTTCATTGGTGACTGCTGTGGATTTCAACGTCGGAAAGCAAAGTCGAGCTGATATGAAGGCAACAGGGAAACGCAAAAATAATGCTCGCACATTGGAGCCCAATTCGGCTTTATGTAAGGTGGTTGTG---GAGGATGCAATTTATGTCATCAGATGTTGTGTAAAAGGTGCACTTCTGGAAGTCAATGAGCGGCTCATAAGAGAACCTGCCTTGCTGAATTCCCATGCAGCCACTGAAGGTTATGTTGCCATCATGATGCCCAAGGCAGATGACTGGAAGAAATCCCAAAAGGCTTTATTGACCCGCAAAGAGTAT---AGAGATTGCAGAAGCTTGGATCCAGAATTGTAG------------------------------------------------------------------------------------------------------------ Aquilegia_coerula_Aquca_00011.1 CTTATACCCAATATATCT---------------------GATCTT---CCATTAACTCCACCTTCTGCTATTGATTCAAATTTCATTACTTACTTTGCCCCTGATTTTATAAAGCCAGGGCATGATCAATATGTTCATCGACACGCAAATGGGTTATGTGTGATTGGTTTGGCTCCAACCCACATTGCATTAAGAGAGAAGAATGAACCAATTACATCTGTTGATTTTAATGTTGGAAAGTCTGATCGAAGTGAAATTAAAGTTACTGGAAAGCATAAGAGGAATGCTCGAATCTTTGAACCTAATTCAGCTTTGTGCAAAGTATTTGTC---AAAGAAACAGCATATGTTGTCAGGTGTTGTGTTAAAGGATCTTTACTGGAAGTGAACGATAGACTAATAAAGCAGCCCGAACTGCTAAACTCATCAGCTGACCGAGAAGGTTACATTGCAATTGTTATGCCAAAACCTGTAGATTGGCTCAAATTCAAGAATTCGGCGTTGACCCTTGAAGACTAC---AAGAAGCTTAGAAAT---TAT---TGA------------------------------------------------------------------------------------------------------------------ Arabidopsis_thaliana_gDNA_AT1G75980 CTGCTTTCAGATATTGGA---------------------GAACTT---CCGATTTCTCCTCCTTCAGCTACACAAGTCAATTTTGTTTCTTACTTCATCACAGATTTTACTAAATCGGGTCATGATCAATATATTTACCGTCACGCTAATGGGTTGTGTGTAATTGGATTGGCTCCTACGCATATAGCTTTT---AAGGATGAAGGTGGAATCACTAGTGTCGATTTCAATGTTGGTAAGTCTGATCGTAGCGTCTTGAAAGTCTCCGGCAAGCGTAAAAAGAATGCGTTGCGCTCTGAATCGAATACAGCATTGTGCAAAGTTTCCACT---GCAAAAGATACTTACATTGTTAGGTGTTGCGTTAAAGGCTCTCTCTTGGAGGTCAACGAGAGATTGATTAAGCAACCAGAGCTTCTTAATTCAACGGCTGACCGCGAAGGGTATATTGCGATAATTATGCCAAGACCTGCAGATTGGACCAAAAACAAGGAGTCACTGATAACTCTGGAGGAATAT---AAAGAAAAGAAAGAAATGTCTTTATGA------------------------------------------------------------------------------------------------------------------ Argyrochosma_nivea_XDDT ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGTTGTGTAAGGGGGGCTTTGCTTGAAGTGAATGAGCGCCTAATGAAGGAGCCTACATTACTCAAGACAAAGGCTGCCAGTGAGGGTTTTGTAGCCATCATGATGCCAAGACCAGGTGACTGGAAAAAAGCTTCATCCACTTTATTGACTGTTGAAGAGTAT---GTAGACCGCAGGTTTCTTTTGAAGAGTGATATAATACCATGTTAA------------------------------------------------------------------------------------------------ Asplenium_nidus_PSKY CTCTATCCTGCAGCACAC---------------------GATCTA---CCCCTTCGTCCTCCCCAGGCTATCCACTCCAACTACGCTCACTTTTTTGTCGTAGACTTCATGAAGGCTGGCCATGATCAATACATATACAGGCACCATAACGGTCTGTGCGTTGTAGGATTGGCTCCAACCCATGTTGCTGTG---GGTTTGGATGCCTCAGTCACTTCAGTGGATTTCAATGTTGGGAAACAAAGCCGGACTGAAATGAAGGTATCAGGGAAACGCAAGAATGATGCTCGTGTGCTGGAGCCAACGTCAGCATTGTGCAAAGTTACCTCC---AATGATACAACTTACATAATCAGATGCTGTTTGAGGGGAGCCTTGTTGGAAGTAAATGAACGACTTATTAAGGAGCCCACTCTTTTGAAAACCAAGGGAGAGAGTGAAGGTTTCGTTGCCATCATGATGCCCAGGCCAGGTGATTGGAAGAAAGCCTTACCAACTCTTATGACTGCTGAGGAATAT---GCACAACGGAGGGGGTACGGTTCCAAGTAA--------------------------------------------------------------------------------------------------------------- Asplenium_platyneuron_KJZG CTCTATCCTGCAGCACAC---------------------GATCTA---CCCCTGCGTCCTCCCCAAGCTATCCACTCCAACTACGCTCACTTTTTTGTAGTCGACTTCATGAAGGCTGGTCATGATCAATACATATACAGGCACAATAACGGTCTGTGCATTATAGGAGTGGCTCCAACCCATGTTGGTGTG---GGTTTGGATGCATCGGTCACTGCAGTGGATTTCAATGTGGGGAAGCAAAGCCGGACTGAAATGAAGGTATCGGGGAAACGCAAGAATGATGCTCGTGTGCTGGAGCCAACGTCGGCATTGTGCAAAGTTACCTCC---AATGATACAACTTACATAATCAGATGCTGTTTGAGGGGTGCCCTGTTGGAAGTAAATGAACGACTTATTAAGGAGCCCACACTTTTGAAAACCAAGGCAGAGAGTGAAGGTTTCATTGCCATCATGATGCCCAGGCCGGGCGATTGGAAAAAAGCCTTACCAATTCTTATGACTGCCGACGAATAT---GCACAACGGAGGAGGTGCTTTTCCAAGTAA--------------------------------------------------------------------------------------------------------------- Athyrium_filixfemina_URCP ---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGTGGCTCCTACCCACGTTGCTGTG---GATACTGATGCCTTGGTCACTGCGGTGGATTTTAATGTGGGAAAACAAAGCCGGGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCTACTTCGGCATTATGCAAAGTTGTCTCC---AATGACACACCATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAATGAACGACTTATGAAGGAGCCCACACTTGTGAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGCAGGTCTCTTCCAAAAAGTTTGACAACACCTTCATGA------------------------------------------------------------------------------------------------ Athyrium_sp_AFPO CTTTACCCTGCAGCGCAC---------------------GATCTC---CCCCTTCGTCCCCCCCAAGCTATTCTTTCCAACTACGCTCACTTCTTTGTCGTCGACTTTATGAAGGAAGGCCACGATCAATACATTTACAGGCACAATAACGGTCTGTGCATTATAGGAGTGGCTCCTACCCACGTTGCTGTG---GATACTGATGCCTTGGTCACTGCGGTGGATTTTAATGTGGGAAAACAAAGCCGGGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCTACTTCGGCATTATGCAAAGTTGTCTCC---AATGACACACCATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAATGAACGACTTATGAAGGAGCCCACACTTGTGAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGCAGGTCTCTTCCAAAAAGTTTGACAACACCTTCATGA------------------------------------------------------------------------------------------------ Azolla_caroliniana_cf_CVEG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATTGGCTTCAACACACATTGCACTG---GATGGTAATGCTTCCATCACCACTGTGGATTTCAATGTTGGGAAGCAAAATAGAACTGAAATGAAGGTCACAGGAAAAAGGAAAAAAGATGCACATATCCTGGAACCTAACTCCATACTATGCAAAATCATTTCA---AATGACAACACTTTTGTTATCCGATGTTGTATAAAGGGAGCTCTTTTGGAAGTCAATGAGCGGCTCCTAAAGGAGCCATCTCTGCTTAAAACAAAAGCTGCTAGTGAAGGTTACATAGCCATCATAATGCCTCGGGGAGATGATTGGAAGAAGGCATCATCATCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------- Blechnum_spicant_VITX CTGTACCCTGCAGCGCAC---------------------GAGCTC---CCCCTTCGGCCTCCCCAAGCTATTGTTTCCAACTACACCCATTTCTTTGTCGTAGACTTTATGAAGGCTGGCCACGATCAATACATTTACAGGCACAATAACGGTCTGTGCGTTATAGGAGTGGCTTCTACCCATGTTGCTGTG---GATACTGATGCCTTGGTCACTTCGGTGGATTTCAATGTGGGAAAACAATGCCGGGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCTCGTGTGCTGGAGCCTACGTCGGCATTATGCAAAGTTGTCTCC---AATGACGCAACATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAACGAACGACTCATGAAGGAGCCAATGCTTCTGAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCCTTTTGACTGCTGAAGAGTAT---GCACAACGCAGGTCTCTTTCAAACAGTTTGACAACACCTTCATGA------------------------------------------------------------------------------------------------ Bolbitis_repanda_JBLI CTATACCCTGCAGCGCAC---------------------GAGCTT---CCCCTTCACCCTCCCCAAGCCATTCATTCCAACTACGCTCAATTCTTTGTCGTCGATTTTATGAAGGAGGGCCATGATCAATACATTTACAGGCACAATAATGGTCTGTGCATTATAGGAGTGGCTCCCACCCATGTGGCTGTG---GATACTGATGCCTTGGTCACTGCGGTGGATTTTAATGTGGGAAAACAAAGCCGGGCGGAAATGAAGGTCTCAGGAAAGCGCAAAAATGATGCCCATGTACTGGAGCCTACTTCGGCATTATGCAAAGTTGTCTCC---CATGACACAACATATATAATCAGATGTTGTTTGAGAGGCGCTTTGTTGGAAGTTAACGAAAGACTCATGAAAGAGCCCACACTACTCAATACTAAGGCAGCCAGTGAAGGTTTTGTAGCCATAATGATGCCGAGGCCAGGTGATTGGAAAAAAGTTTCATCAACCTTTTTGACCGCTGAAGAGTAT---GCGGAACGTAGGCATAGATGA------------------------------------------------------------------------------------------------------------------------ Botrypus_virginianus_BEGM CTTTACCCATCTGCACAA---------------------GAATTG---CCATCGCGCCCACCGGCTGCCCATAATTGCAATTTCGCACACTTCTTCGCTGTTGACTTCTTCAAAGAGGGCCATGATCAGTATATCTATAGGCATGCCAACGGGTTGTGTATTGTTGGATTAGCTCCTACGCACATTGCATTG---CAGAGCCATGCGTCGGTGACGGCTGTCGACTTCAATGTTGGAAAGCAAAACCGAGCGGAGATGAGGCCAACTGGCAGAAGGAAAAATAATGCTTGCACCTTGGAGCCAAACTCTGCTCTGTGCAAAGTTGTCGTA---GGTGATGCAACATATATTATCAGGTGTTGTGTGAAAGGGGCACTCTTGGAAGTAAATGAACGGCTTGTCACCCAACCTTCTTTACTTAATTCCCACGCAGCTACAGAAGGGTATGTTGCCATCATCATGCCCAAGCTGGATGCCTGGAAGAAAGCGCAGAAAACCTTTTTGACTTGTGATGAGTAC---AGAGATCATAGAGTGTCGCATGATGCATCAAATTAG--------------------------------------------------------------------------------------------------------- Crepidomanes_venosum_TWFZ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGTGTTGGAGTCAAACTCCGCTCTGTGTAAAGTTACTACG---AACGATGCTTTTTACATCATCAGATGTAGTGTGAAAGGGGCACTATTGGAAGTAAATGAGCGCCTTACAAAAGAACCCTCTTTACTTCAACTCAAATCGGCCACGGAAGGCTATATTGCTATCATGATGCCTAAGGCTGACGACTGGAAGAAAGCCATGGCGACCTTTCTAACCAGCAAAGAGTAT---GCAGATCGAAG---------------------------------------------------------------------------------------------------------------------------------- Cryptogramma_acrostichoides_WQML CTCTACCCTGCGGCGCAC---------------------GATCTT---CCGCCTCGCCCTCCTCAAGCTATTCATTCTAATTTCGCTCGTTTTTTTGTTGTTGACTTTATGAAGGACGGTCACGATCAGTACATTTACAGGCACAATAATGGTCTTTGCATTATAGGCCTGGCTCCTACTCACATTGCCGTG---GATAATGATGCCTTGATCACTGTGGTGGATTTTAATGTTGGGAAACAGAGCCGAGCTGAAATGAAGGTTTCTGGAAAGCGCAAAAATGATGCCCGTGTGCTGGAGCCTACATCAGCATTATGCAAAGTGGTCTCT---AGTGATGTAACATACATAGTCAGATGCTGTATAAGGGGGGCTTTGCTGGAAGTGAATGAGCGTCTAATGAAGGAGCCTACATTACTAAACACTAAGGCTGCCAGTGAGGGTTTCATAGCCATCATGATGCCGAGGCCAGGTGACTGGAAAAAAGCTTCATCCAGTTTTTTGACCGCCGAAGAGTAT---TTGGAGCGCAGGGCTCTTTTAAAGAGTAAATTAACACCATGCTAA------------------------------------------------------------------------------------------------ Cryptomeria_japonica_DSXO CTGTGCCCCGCGGCTCAT---------------------GAGCTT---CCTTTACGTCCTCCTCCTGCAATAGAAGCGAACTATGTTCAATATTACGTCGTAGATTTTCTGAAGCCCGAGCACGATCAGTATATTTACAGACATGCAAACGGGCTATGCGTAATTGGCCTGGCATCCACGCATGTTGCTTTG---GGAAAAAAGCCGGAGGTTAAAGCTGTGGACTTTAATGTTGGAAAATCAAGCCGAAGCGATATTAAGGTCACTGGAAAGCGAAAAAAGAATGCTCACTTTTTGGAGGCTAATTCAGCACTATGTAAAGTAATTGCT---AATGACACATTTTATATCATCAGATGCTGTGTTAGAGGCTCTCTTCTTGAAGTTAATGAGAGACTTATCAAGGAACCTGAGCTACTGAACAAATCTGCTTCAAGCGAAGGATACATTGCCATCATGATGCCAAGGGCTGAAGATTGGCTCAAATCTAAGAATTCCTTCCTTAGTCAAGAAGAGTAT---AAAAGACAGAGAGGT---TCAAACTAG------------------------------------------------------------------------------------------------------------------ Culcita_macrocarpa_PNZO CTCTACCCTGCAAAGCAA---------------------TATCTC---CCTCTCCAGCCTGCCCCTGCCATCGAATGCAACTACGCCCACTTCTTCATCGTCGATTTTATGAAGGAGCGCCATGATCAGTACATTTACAGGCACAACAATGGCTTGTGCGTTATAGGATTGGCTCCGACCCATATTGCGTTG---GATACCAATGTTTTGGTCACTGCCGTGGATTTCAATGTCGGAAAGCAAAGCCGGGCGGAAATGAAAGCCACAGGAAAGCGCAAGAATGATGCACGTGTGTTGGAGCCCACTTCTGCACTATGCAAAGTTGTTTCG---AATGACACGACATACATTATCAGATGCTGTTTAAGGGGGGCTCTTTTGGAAGTCAATGAGCGCCTTATAAAAGAGCACTCTCTTCTTAAAACTAAGGCAGCCAGTGAAGGTTATGTAGCCATTATGATGCCGAGGCCGGGTGATTGGAAGAAAGCTGCATCAACCTTTTTGACTGGCAAAGAGTAT---GCAGAACGCAGGTCCCTTACAAAAAGTTCAGAGACAACTCCATGA------------------------------------------------------------------------------------------------ Cystopteris_fragilis_LHLE CTCTACCCTGCAGCTCAC---------------------GATCTC---CCCCTTCATCCTCCCCAAGCTATTCATTCCAACTACGCTCGCTTCTTTGTCGTCGACTTTATGAAGCCAGGACACGATCAATACATTTACAGGCACAATAACGGTCTGTGCGTTATAGGAGTTGCTCCTACCCACGTTGCTGTG---GATACTGATGCCTTGATCACTGCGGTAGATTTTAATGTGGGAAAGCAAAGCCGAGCTGAAATGAAGGCTTCAGGGAAGCGCAAGAATGATGCCCGCGTGCTGGAGCCTACTTCAGCATTATGCAAAGTTGCCTCC---AATGACACAACATATATACTCAGATGTTGTTTGAGGGGTGCTCTGTTGGAGGTTAACGAGCGGCTTATGAAGGAGCCCACACTCCTCAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCGAGGCCAGGTGATTGGAGAAAAGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGCAGGTCTCTTCCCAAAAGTTTGGCAACACCTTCATGA------------------------------------------------------------------------------------------------ Cystopteris_protrusa_YOWV CTTTACCCTGCAGCTCAC---------------------GATCTC---CCCCTTCATCCTCCCCAAGCTATTCATTCCAACTACGCTCGCTTCTTTGTCGTCGACTTTATGAAGCCAGGACACGATCAATACATTTACAGGCACAATAACGGTCTGTGCGTTATAGGAGTTGCTCCTACCCACGTTGCTGTG---GATACTGATGCCTTGATCACTGCGGTAGATTTTAATGTGGGAAAGCAAAGCCGAGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATAATGCCCGCGTGCTGGAGCCTACTTCAGCATTATGCAAAGTTGCCTCC---AAGGACACAACATATATACTCAGATGTTGTTTGAGGGGTGCTCTGTTGGAGGTTAACGAGCGGCTTATGAAGGAGCCCACACTCCTCAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGTTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGCAGGTCTCTTCCCGAAAGTTTTATTAAGACATCCAAGAC---------------------------------------------------------------------------------------------- Cystopteris_reevesiana_RICC CTTTACCCTGCAGCTCAC---------------------GATCTC---CCCATTAATCCTCCCCAAGCTATTCATTCCAACTACGCTCGCTTCTTTGTCGTCGACTTTATGAAGCCAGGACACGATCAATACATTTACAGGCACAATAACGGTCTGTGCGTTATAGGAGTTGCTCCTACCCACGTTGCTGTG---GATACTGATGCCTTGATCACTGCGGTAGATTTTAATGTGGGAAAGCAAAGCCGAGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGCGTGCTGGAGCCTACTTCAGCATTATGCAAAGTTGCCTCC---AATGACACAACATATATACTCAGATGTTGTTTGAGGGGTGCTCTGTTGGAGGTTAACGAGCGGCTTATGAAGGAGCCCACACTCCTCAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCGAGGCCAGGTGATTGGAGAAAAGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGCAGGTCTCTTCCCAAAAGTTTGGCAACACCTTCATGA------------------------------------------------------------------------------------------------ Cystopteris_sp_XXHP ---------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGCGTTATAGGAGTTGCTCCTACCCACGTTGCTGTG---GATACTGATGCCTTGATCACTGCGGTAGATTTTAATGTGGGAAAGCAAAGCCGAGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATAATGCCCGCGTGCTGGAGCCTACTTCAGCATTATGCAAAGTTGCCTCC---AAGGACACAACATATATACTCAGATGTTGTTTGAGGGGTGCTCTGTTGGAGGTTAACGAGCGGCTTATGAAGGAGCCCACACTCCTCAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGTTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGCAGGTCTCTTCCCGAAAGTTTTATTAAGACATCCAAGACAAC------------------------------------------------------------------------------------------- Cystopteris_utahensis_HNDZ CTTTACCCTGCAGCTCAC---------------------GATCTC---CCCCTTCATCCTCCCCAAGCTATTCATTCCAACTACGCTCGCTTCTTTGTCGTCGACTTTATGAAGCCAGGACACGATCAATACATTTACAGGCACAATAACGGTCTGTGCGTTATAGGAGTTGCTCCTCCCCACGTTGCTGTG---GATACTGATGCCTTGATCACTGCGGTAGATTTTAATGTGGGAAAGCAAAGCCGAGCTGAAATGAAGGCTTCAGGGAAGCGCAAGAATGATGCCCGCGTGCTGGAGCCTACTTCAGCATTATGCAAAGTTGCCTCC---AATGACACAACATATATACTCAGATGTTGTTTGAGGGGTGCTCTGTTGGAGGTTAACGAGCGGCTTATGAAGGAGCCCACACTCCTCAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCGAGGCCAGGTGATTGGAGAAAAGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGCAGGTCTCTTCCCAAAAGTTTGGCAACACCTTCATGA------------------------------------------------------------------------------------------------ Davallia_fejeensis_OQWW ---------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATAGGAATTGCTCCCACCCATGTGGCTGTG---AAGACTGATGTCTTGGTCACTGCGGTGGATTTCAATGTGGGTAAGCAAAGCCGGGCTGAAATGAAGGTATCCGGGAAGCGCAAGAGTGATGCCCATGTTCTGGAGCCCGCTTCGGCATTGTGCAGAGTTGTCTCC---AATGATACATCATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAACGATCGACTTATCAAGGATCCCACCCTTGTCCAAACTAAGGCAGCCAGCGAAGGTTTTATAGCCATTATGATGCCACGGCCCAGTGATTGGAACAAGGCTTGTTCCACCTTTTTGACTGCTGAAGAATAT---GCCCTACGCACATCCACACAGATTCCG--TCATCACTATCTTAA------------------------------------------------------------------------------------------------- Dennstaedtia_davallioides_MTGC ---------------------------------------GACCTC---CCCCTCCGCCCTCACCAAGCCATCCATTGCAATTACGCTCATTTCTTTGTAGTTGACTTTATGAAAGCAGGCCACGATCAATACATTTATAGGCACAAAAACGGTCTATGCATAATAGGAGTGGCTCCTACTCATGTTGCGGTG---GATACTGATGCCTTGGTCACTGAGGTGGATTTCAATGTGGGAAAACAAAGCCGGGCTGAAATGAAGGTTTCGGGAAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCCACTTCGGCATTGTGCAAAGTTGTCTCC---AACGACACAACTTATATAATCAGATGTTGTCTGAGGGGTGCTCTGTTGGAAGTTAATGAGCGACTTACAAAGGAGCCCACACTCCTCAAAACTAAGGCAGCCAGTGAAGGTTTTATAGCAATCATGATGCCAAGGCCAGGTGATTGGAAAAAGGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCGGAACGCAGGTCTCTTTCAAACAGCTTGGTGACACCTTGA--------------------------------------------------------------------------------------------------- Deparia_lobatocrenata_FCHS ---TACCCTGCAGCGCAC---------------------GATCTC---CCCCTTCGTCCTCCCCAAGCTATTTATTCCAACTACGCTCACTTCTTTGTCGTCGACTTCATGAAGGAAGGCCACGATCAATACATTTACAGGCACAATAACGGTCTCTGCATTATAGGAGTGGCTCCTACCCATGTTGCTGTG---GATACTGATGCCTTGGTCACTGCGGTGGATTTTAATGTGGGAAAACAAAGCCGGGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTCCTGGAGCCTACATCAGCATTATGCAAAGTTGTGTCC---AATGACACAACATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAACGAACGACTTCTGAAGGAGCCCACACTTCTGAAAACTAAGGCAGCAAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAGAGCTTCATCAACCTTCTTGACTGCTCAAGAGTAT---GCACAACGCAGGTCTCGTTTGACAAGCACTCAATGA--------------------------------------------------------------------------------------------------------- Didymochlaena_truncatula_RFRB ---------------------------------------------------------CCTCCCCAAGCCATTCATTCCAACTACGCCCATTTCTTTGTCGTTGACTTCATGAAGGCCGGCCATGATCAATACATTTACAGGCACAATAATGGTCTGTGCATTATAGGAGTGGCTCCCACCCATGTGGCTGTG---GATACCGATGTCTTGGTCACTGCGGTGGATTTCAATGTGGGAAAACAAAGCCGGGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCTGTGTGCTGGAGCCTACATCGGCATTATGCAAAGTTGTGTCC---AATAACACAACATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAACAAACGACTCATGAAGGAGCCCACACTACTCAAAACTAAGGCAGCGAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAGGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACACAGATCTCTTCCAAAAAGTTAG--------------------------------------------------------------------------------------------------------------- Diplazium_wichurae_UFJN ---------------------------------------------------------------------------------------------------------------------------GATCAATACATTTACAGGCACAATAACGGTCTGTGCATTATAGGAGTGGCTCCTACCCACGTTGCTGTG---GATACTGATACCTTGGTCACTGCGGTGGATTTTAATGTGGGAAAACAAAGCCGGGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCTACTTCGGCATTATGCAAAGTTGTCTCC---AATGACACAACATATATTATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAATGAACGACTTATGAAGGAGCCCACACTTCTGAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGTAGGTCTCTTGCAAAAGGTTTGATAACACCTTCATGA------------------------------------------------------------------------------------------------ Dipteris_conjugata_MEKP CTCTATCCGACTGCCCAA---------------------GAGCTC---CCCTTGCGCCCTCCTCCTGCCGTCGAATCTAACTACAATCATTTCTTCGTCGTTGATTTCTTGAAGGAGCGCCATGATCAGTACATCTACAAGCACAACAATGGCTTGTGCGTTATTGGATTAGCCCCAACCCATATTGCACTG---GATGGTGATTCTGCGGTTACTTCCGTGGATTTCAATGTGGGAAAGCAAAGCCGAGCTGACATGAAAGCAACAGGCAAGCGGAAAACTAATGCTCGTGTACTGGAGCCCAATTCGGCTCTGTGTAAAGTTATTTCG---AACAATACCACTTACATCATCAGATGTTGTGTGAAAGGAGCACTGCTCGAAGTCAACGAACGCCTTACAGATGAGCCGTCCTTACTAAAACTTAAGGCAGCAACTGAAGGTTTTGTTGCTATCATAATGCCAAAGCCTGATGACTGGAAGAAAGCTGCAGCATCTTTTTTAAGCAGCAAAGAATAT---GCAGAACGCATGCTTACTACAAAAGTTTGA--------------------------------------------------------------------------------------------------------------- Equisetum_diffusum_CAPN CTATACCCA------------------------------GACTTG---CCCCCTTGCCCAACACCGGCAATCCGGCACAACTTTGCTCACTTCTTTGCCCTCGATTTCTTCAAAGAACGTCATGACCAATACATCTACAAGCATCCCAATGGTCTTTGTGTGATCGGACTGGCTCCCACGCACATTGCATTC---GACAAGGGCCGCCAAATCTCGGGTGTCGACTTCAATGTCGGAAACCGAAGCAGGGTGGATCTGCAGGCATCGGGCCGACGGAAATCAAATGCGCGCATTCTGGAGCCCAATTCAACGCTGTGCAAAGTTACCGCA---GGGGACGAGTCCTTCATTGTGAGATGTTGTGTGAGAGGTGTGTTCCTGGAGGTGAATGAAAGGCTCGTTAAAGAACCTGCCTTGCTCAATTCACATGCTGATAGCGAGGGCTTTATTGCGATTCTCATGCCAAAACCCCACGACTGGAAAAAGGCAGAGACGACTTTCTTGTCTTTTGAGGAGTAC---AATAACCGCAAGGGCTTAACAAATGATTGA--------------------------------------------------------------------------------------------------------------- Equisetum_hyemale_JVSZ CTCTACCCA------------------------------GACCTG---CCCCCTTGCCCAACTCCGGCAATCCACCACAACTTTGCTCACTTCTTCGCTCTTGATTTCTTCAAAGAGCGCCATGACCAATACATCTACAAGCATCCCAATGGCCTCTGTGTGATCGGACTGGCGCCCACGCACATTGCATTT---GACGAGGGCCGCCAAATCTCGGGTGTCGACTTCAATGTCGGAAACCGAAGCAGGGTGGATCTACAGGCATCGGGCCGACGGAAATCAAATGCACGTATTCTGGAACCCAATTCGACGCTGTGCAAAGTTACCGCA---GGGGACGAGTCCTTCATTGTCAGATGTTGTGTGAAAGGCATGTTCCTGGAGGTGAATGAAAGGCTTGTTAAAGAACCTGCCTTGCTCAATTCACATGCTGATAGCGAGGGCTTTATTGCAATTCTCATGCCAAAACCCCACGACTGGAAAAAGGCAGAGACAACTTTCTTGACTTCTGAGGAATAC---AAAAACCGCAAGGGCTTAACAAACAATTGA--------------------------------------------------------------------------------------------------------------- Gaga_arizonica_DCDT ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGTTGTGTAAGGGGGGCTTTGCTAGAAGTGAACGAGCGCCTAATGAAGGAGCCTACATTACTGAAGACTAAGGCTGCCAGTGAGGGTTTCATAGCCATTATGATGCCGCGGCCTGGTGACTGGAAGAAAGCGTCATCCACTTTATTGACCATTGAAGAGTAT---GTGGAGCGCAGGTCTGTTCCAAAGAGTGATATAATACCATGTTAA------------------------------------------------------------------------------------------------ Ginkgo_biloba_SGTW CTCTATCCCAGCGCTCACGAGCTTCCTTTACGTCCTCCCGAGCTT---CCTTTACGTCCTCCTCCTGCAATAGAATCAAACTATACTCAGTATTTTGCTATAGATTTTCTCAAGCCGGGCCACGATCAATATATTTACAGACATGCAAACGGGTTATGCGTGATTGGTTTGGCTTCTTCGCATGTCGCTCTT---GGAGATAAACCACAGGTTAAAGCAGTGGACTTCAATGTTGGGAAATCAAGCAGAAGTGATATTAAGGTCACAGGAAAGCGGAAGAAGAATGCTCACTATTTGGAAGCTAATTCAGCATTGTGTAAAGTACTTTCA---AATGATACATTTTATATTATCAGATGCTGTGTCAAAGGGCCTCTTTTGGAAGTTAATGAGAGACTTATCAAGGAACCTGAATTACTGAACACCTCTGCTTCTAGTGAAGGATACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Gymnocarpium_dryopteris_HEGQ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGTTGCTCCTACCCACGTTGCTGTG---GATACTGATGCCTTGGTCACTGCGGTGGATTTTAATGTGGGAAAGCAAAGCCGAGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAACCTACTTCAGCATTATGCAAAGTTGTCTCC---AATGACACAACATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAATGAACGGCTTATGAAGGAGCCCACACTCCTCAAAACGAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCTTTTTGACTGCTCAAGAGTAT---GCACAACGCAGGTCTCTTCCAAA---------------------------------------------------------------------------------------------------------------------- Homalosorus_pycnocarpos_OCZL ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCTACTTCGGCATTATGCAAAGTTGTCTCC---AATGACACAACATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAACGAACGACTTATGAAGGAGCCCACACTTCTGAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGCCGGTCTCTAGCGTTTTCAATAGCTTAA--------------------------------------------------------------------------------------------------------- Hymenophyllum_bivalve_QIAD CTTTACCCAACCGCACAG---------------------GAGCTT---CCTCCACGCCCTCCCCCTGCCATCGAGTGCAACTACACTCACTTCTTCACCCTCGATTTTTTGAAGGAGCGCAACGATCAGTACATCTACAAGCACGCCAACGGATTGTGCGTCATAGGACTAGCCCCGACCCATATTGCACTG---GACAGTAATTCTTCGATCATTGCCGTTGATTTCAATGTGGGTAAGCATAGCCGGGCTGACATGAAGGCGACAGGGAAACGGAAAAGTAATGCTCGTGTACTGGAGCCCAACTCTGCTTTGTGTAAAGTTACCACG---AACGACGCTTTTTACATCGTCAGATGTTGTGTCAAAGGAGCACTATTGGAAGTCAATGAGCGCCTTACAAAGGAGCCCTCTTTACTGAAACTCAAGGCGGCTACCGAAGGTTACATTGCTATCCTGATGCCAAAGTCTGATGACTGGAAGAAAGGCACAGCGGCCTTTCTAACGAGCAAAGAATAT---G-------------------------------------------------------------------------------------------------------------------------------------------- Leucostegia_immersa_WGTU CTGTACCCCGCAGCGCGC---------------------GATCTC---CCCCTTCGTCCTTCTCAAGCCATCCATTCCAACTTTGCTCACTTTTTTGTCGTCGACTTTATGAAGGCAGGCCATGACCAATACATTTACAGGCACAATAATGGTCTGTGCATCATAGGAGTGGCTCCCACTCATGTGGCTCTG---AATACGGATGTCTCGATCACTATGGTGGATTTTAACGTGGGAAAACAAAGCCGGGCTGAAATGAAGGTTTCCGGGAAGCGCAAAAACGATGCCCACGTGCTGGAGCCCACCTCGGCATTATGCAAAGTTGTCTCC---AATGATACACCATATATAATCAGATGTTGTTTAAGGGGAGCTTTGTTGGAAGTCAATGAACGACTTATAAAGGAGCCAACACTCCTCAAAACCAAGGCAGCCAGTGAAGGTTTCATTGCCATTATGATGCCAAGGCCAGGTGATTGGACAAAAGCTTCATCAACATTTTTGACGGCCGAACAGTAT---GCAGAATGCAGATTTCTTCCAAAAGTTTAA--------------------------------------------------------------------------------------------------------------- Lindsaea_linearis_NOKI CTCTACCCTTCTGCTGAT---------------------GAGCTT---CCTGCTCGTCCTCTTCCTGCCGTCCAGTGCAATTATACGCATTTTTTTGTCGTCGACTTCATGAAGGAGGGACACGATCAATACATTTATAGGCACAATAATGGCCTGTGCGTGATAGGATTGGCTCCAACGCATGTTGTGCTG---GACTCAAATGCTTTGGTCACAACTGTGGACTTCAACGTGGGGAAACAGAGCCGGGCTGAAATGAAGGCAACAGGAAAGCGCAAGAACGATGCACATGTTCTTGAGCCTACTTCGGCCCTATGTAAAGTCGTTGCA---AACAATATAACATACATTGTCAGATGTTGCATTAAGGGGGCACTGCTGGAAGTGAACGAGCGCCTCACAAAGGAGCCATCACTTCTTCAAACTAAGGCAGCCAGCGAAGGTTATATAGCCATCATGATGCCAAGGCCAGGTGATTGGAAGAAAGCGTCTTCGACTTTTTTGACAAGTAAAGAGTAT---GCAGAACGCAAATCATGCCCGAAGGCAACATCTTGA--------------------------------------------------------------------------------------------------------- Lindsaea_microphylla_YIXP ---------------------------------------------------------------------------------------------------GTCGACTTCATGAAGGAGGGACACGATCAATACATTTATAGGCACAATAATGGCCTGTGCGTGATAGGATTGGCTCCAACGCATGTTGTGCTG---GACTCAAGTGCTTTGGTCACAACTGTGGACTTCAACGTGGGGAAACAGAGTCGGGCTGAAATGAAGGCAACAGGAAAGCGCAAGAACGATGCACGTGTTCTCGAGCCTACTTCGGCCCTATGTAAAGTCCTTGCA---AACAATATGACATACATTGTCAGATGTTGCATTAAGGGGGCACTGCTGGAAGTGAACGAGCGCCTCACAAAGGAGCCATCACTTATTCAAACTAAGGCAGCCAGCGAAGGTTATATAGCCATCATGATGCCAAGGCCAGGTGATTGGAAGAAAGCGTCTTCGACTTTTTTGACAAGTAAAGAGTAT---GCAGAACGCAAATCATGCCTGAAGGCTACGTCTTGA--------------------------------------------------------------------------------------------------------- Lygodium_japonicum_PBUU CTCTATCCATCAGCTAAC---------------------GAGCTT---CCCTCGCGCCCCCCACTTGCTGTAGAGCGCAATTACACCCATTACTTTGTCACAGATTTTTTGAAAGAGCGGCATGATCAGTACATTTACAGGCATGACAACGGATTGTGTGTCATTGGACTAGCACCAAGCCACATAGCATTT---GAGGAAGATTCCTCAGTTGTAGCTGTTGATTTCAATGTGGGAAAGAAGAGTCGTGTGGATATGAAAGCAACCGGAAAGCGCAAAACTGATGCATGTATATTAGACCCGAACTCCGCTTTATGCAAAGTAATTACA---AACAAGTCAACATACATTGTCAGATGTTGCGTGAAAGGAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Myriopteris_rufa_GSXD ---------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGCATTATAGGCCTGGCTCCTACTCATATTGCTCTG---GGTAATGATGCCGTGGTCACTGCGGTGGATTTTAATGTCGGGAAACAGAGCCGAGCTGAAATGAAGGTTTCTGGAAAGCGCAAGAATGATGCTCGTGTGCTGGAGCCTACATCAGCTTTGTGCAAAGTGGTCTGC---AACGATGCAACACACATAGTCAGGTGTTGTATAAGGGGGGCTTTGCTAGAAGTGAATGAGCGCTTAATGAAGGAGCCTACATTACTCAATACTAAGGCTGCCAGTGAGGGTTTCATAGCCATCATGATGCCAAGGCCCGGTGACTGGAAAAAAGCTATATCCACTTTATTGACTGTTGAAGAATAT---GTGGAGCGCAGGTCTCTTTCGAAGAGTGAATTGATACCC------------------------------------------------------------------------------------------------------ Nephrolepis_exaltata_NWWI ---------------------------------------------------------------------------------TACGTTCACTTCTTTGTCGTCGACTTTATGAAGGCAGGGAATGATCACTACATTTACAGGCACAATAATGGTCTGTGCATCATAGGGCTGGCTCCCACCCATGTGGCTGTG---GATACTGATTTCTTGGTCACTGAGGTGGACTTCAATGTGGGAAAACAAAGCCGGGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCTAC?TCAGCATTATGCAAAGTGGTCTCC---AATGACACAACCTATATAATCAGATGTTGTTTGAGGGGTGCTTTGTTGGAAGTGAATGAACGGCTTGTAAAGGAGCCCACACTCCTCAACACTAAGGCAGCCAGTGAAGGTTTCATTGCCATCATGATGCCAAGGCCAGCAGATTGGGAAAAAGCTTCTTCAACTTTTTTGACTGCTGAAGAATAT---GCTCACCGCAGATTGATGGCTTCCAAAGATGCGGGTACTGTTAACATTCCACTTGTAAACCCCTCTCTACAAGAGGAGGCATGTGTGCCCTCCATCAGCTTGACAGCTGCACCAGGCAAGGCTTTCCAAGTGTCAGAGTAA Notholaena_montieliae_YCKE CTTTACCCTGCAGCGCAA---------------------GAGCTT---CCGAGTCGCCCTCCTCAAGCCATACATTCTAATTACGCTCATTTTTTTGTCGTTGACTTTATGAAGGACGGCCATGATCAATACATATACCGGCACAACAACGGGC??????????????CTGGCTCCTACTCACATTGCTCTG---AGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Nuphar_advena_WTKZ CTTCTTCCCGACCCGAAC---------------------CAACTG---CCGCTCGCCCCCCCTTCCGCCGTCGACTCCAATTTCGCTCACTACTTCGCCGTCGATTTTCTCAAGCCCGGGAACGATCAGTATATTTATCGCCACGCCAACGGGCTGTGTGTGGTCGGATTGGCTCCGACGCACGTTGCCCTA---GCGGAGGAGGGAGGGATTAGTGCGGTCGATTTCAATGTCGGAAGGACGGACAAGAGTGAGATCAAGGTCACCGGCAAGCGGAAGAAGAATGCACAGCATCTTCAGCCCAATTCTGCTTTATGCAAAGTGACGGCA---AATGACAAACTATTTATTA--------------------------------------------------------------------------------------------------------TCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Onoclea_sensibilis_HTFH CTTTACCCTGCAGCGCAC---------------------GATCTC---CCCCTTCGTCCTCCCCAAGCTATTCTTTCCAACTACGCTCACTTCTTTGTCGTCGATTTTATGAAGGCAGGCCACGATCAATACATTTACAGGCACAATAATGGTCTGTGCATTATAGGAGTGGCTCCTACCCACGTTGCTGTG---AATACTGATGCCTTGGTCACTGCCGTGGATTTCAATGTGGGAAAACAAAGCCGGGCTGATATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCTACGTCAGCATTATGCAAAGTTGTCTCC---AATGACACAACATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAACGAACAACTTATGAAGGAGCCCACACTTCTGAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGCAGGTATCGTCCAAAAAGTTTGACAACACCTTCATGA------------------------------------------------------------------------------------------------ Ophioglossum_petiolatum_WTJG ------------------------------------------------------------CCAAGCGCCCTCCATTCTAATTATGCTCACTTCTTCGCTGTGGATTTTTTGAAGGAGTGTCATGATCAATATATTTACAGACATGCGAATGGGCTATGCGTTGTTGGATTGGCCCCTACACATATTGCACTG---CTGAGCCATACAAAAGTCACAGCTGTGGACTTCAATGTTGGAAAACAAAACAGGGCGGAG???????????????????????????????????????????????????????????????????????????---?????????????????????AGGTGCTGTGTGAAAGGAGCACTCTTGGAAGTAAATGAGAGGCTTGTTGAGAAACCTACTTTGCTTAACTCACATGCAGCAACAGAGGGATACATTGCCATTATCATGCCCAAGCCAGATGACTGGAAGAAAGCACAAAAGACCTTTTTGACTTTTGACGAATAC---AAAGCTCACAGGTTGTTACATGAAACTAGTGGCCAATAA------------------------------------------------------------------------------------------------------ Ophioglossum_sp_QHVS TTGTTTCCAATAGGGCTG---------------------GAGAACCTACCATCCAAGCCTCCAAGCGCCCTCCATTCTAATTATGCTCACTTCTTCGCTGTGGATTTTTTGAAGGAGTGTCATGATCAATATATTTACAGACATGCGAATGGGCTATGCGTTGTTGGATTGGCCCCTACACATATTGCACTG---CTGAGCCATACAAAAGTCACAGCTGTGGACTTCAATGTTGGAAAACAAAACAGGGTGGAGTTGAAGGCGACCGGCAAAAGGAAAAATAATGCTCGAATATTGGAACCCAATTCTGCTTTATGCAAAGTCATTGCT---GACGATGCAACCTATATTATGAGGTGCTGTGTGAAAGGAGCACTCTTGGAAGTAAATGAGAGGCTTGTTGAGAAACCTACTTTGCTTAACTCACATGCAGCAACAGAGGGATACATTGCCATTATCATGCCCAAGCCAGATGACTGGAAGAAAGCACAAAAGACCTTTTTGACTTTTGACGAATAC---AAAGCTCACAGGTTGTTACATGAAACTAGTGGCCAATAA------------------------------------------------------------------------------------------------------ Osmunda_javanica_VIBO CTTTATCCAACAGCACAA---------------------GACCTT---CCGCCACGCCCTCCGCCTGCCATCGAGTGCAACTTCACTCACTTCTTTCTTGTCGACTTTTTGAAGGAGCGCCATGATCAATACATCTACAGGCATGCCAACGGTTTGTGTGTGATAGGATTAGCCCCAACACATATTGCATTG---GATGCCAATTCTTCCGTCACAGCTGTGGACTTCAACGTGGGAAAGCAAAGCCGAGCTGATATGAAGGCAACAGGCAAACGGAAAAATAATGCTCGCATTCTGGAGCCCAATTCTGCTCTGTGTAAAGTTATCACG---AATGATGCAACTTACATCATCAGATGTTGTGTGAAAGGTGCACTTTTGGAAGTCAATGAGCGGCTTATAAAGGAGCCTTCTCTACTCAGATCTCATGCAGCCACCGAAGGGTATGTTGCCATCATGATGCCCAAGCCAGATGACTGGAAGAAAGCCCAAACAACCTTTTTGAGCAGCAGAGAATAC---TTGGATCATCGTTCTCAAGCAAATCGACAGACTTCTTCCAATCTTTGTGGTGGAGCGAAATAG------------------------------------------------------------------------------ Osmunda_sp_UOMY CTTTATCCAGCAGCACAA---------------------GACCTT---CCGCCACGCCCCCCACCTGCCATCGAGTGCAACTTCACTCACTTCTTTCTTGTCGACTTTTTGAAGGAGCGCCATGATCAATACATCTACAGGCATGCCAACGGTTTGTGTGTTATAGGATTAGCCCCAACACATATTGCATTG---GATACGAATTCTTCAGTCACAGCTGTGGACTTCAACGTGGGAAAGCAAAGCCGAGCTGATATGAAGGCAACAGGCAAACGGAAAAATAATGCTCGCATTCTGGAGCCCAATTCTGCTCTGTGTAAAGTTATCACG---AATGATGCAACTTACATCATCAGATGTTGTGTGAAAGGTGCACTTTTGGAAGTCAATGAGCGGCTTATAAAGGAGCCTTCTCTACTCAGATCTCATGCAGCCACCGAAGGGTATGTTGCCATCATGATGCCCAAGCCAGATGACTGGAAGAAAGCCCAAACAACTTTTTTGAGCAGCAGAGAATAC---TTGGATCATAGTGCTCAAGCAAATCGACAGACTTCTTCCGATGTTTGTGGTGGAGTGAAATAG------------------------------------------------------------------------------ Parahemionitis_cordata_ZXJO ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAATTTTGATGTCGGGAAAAAGAGCCGAGCTGAGATGAAGGTTTCTGGAAAGCGCAAGAATGATGCTCGTGTGCTTGAGCCTACATCAGCGTTATGCAAAGTGGTCTCC---AATGATGCAACATACATAGTCAGGTGTTGTATAAGGGGGGCTTTGCTAGAAGTGAACGAGCGCTTAATGAAGGAGCCTTCGTTACTGAAGTCTAAGGCTGCCAGTGAGGGTTTCATAGCCATCATGAAGCCGTGGCCTGGTGACTGGAAAAAAGCTTCATCCACTTTATTGACCATTGAAGAGTAC---GTGGAGCACAGGTCGCTTCCAAAGAGTGATTTAGTACCATGTTAG------------------------------------------------------------------------------------------------ Peperomia_fraseri_XSZI TTGCTTCCCGACGTGGCC---------------------TCGCTC---CCTCTTTCACCACCTTCCGCCGTGGATACCAACTTCGTCACTTATTTCGTCGCAGATTTTATGAAGCCCGGGCATGACCAGTATATTCGACGACATCCCAACGGATTGTGTGTGATTGGTTTGGCTGCTACCCACATTGCGTTG---AACGAGCCTGGAGGTGTGACCTCAGTGGATTTTAATGTGGGGAAGTCTGACCGAAGTGGGATCAAGGCCACTGGGAAGAGGAAGAGGAATGCCCCACAGTTTGATGCCAACTCAGCCTTATGCAAAGTCTCAGCA---AATGGTACTCTATACATTGTGAGGTGTTGTGTCAAAGGTTCTCTACTGGAAGTTAACGACAGGCTGATTCAGCACCCTGAGTTGCTCAACTCCTCAGCGGAACGAGAGGGATTTATTGCAATCATGATGCCAAGACCAGCAGATTGGCTTAAAATCAAGAACTCTTTGTTGACAAAAGAAGATTAC---ATGAAAAAGAGAGAAATGTTT---TAG------------------------------------------------------------------------------------------------------------------ Phlebodium_pseudoaureum_ZQYU ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCACTTCAGTGGATTTTAATGTGGGTAAACAAAGCCGGACTGAAATGAAGGTGTCAGGGAAACGTAAGAATGATGCTCGCGTGCTGGAGCCCACTTCGGCATTGTGCAAAGTTGTCTCC---AATGACGCATCATATATAATCAGGTGTTGTTTGAGGGGTGCTCTGTTGGAAGTCAATGAACGGCTTATCAAGGATCCCACTCTTGTCAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCACGGCCAGGTGATTGGAAAAAGGCTTCTTCCACCTTTTTGACCGCTCATGAATAT---GGGCTACGCACATCCACACGGAATCCATCTCATGACTATTCAAATCCTTTATGA--------------------------------------------------------------------------------------- Phymatosorus_grossus_ORJE ------------------------------------------------------------------------------------GCTCGCTTCTTTGTCGTCGACTTTATGAAGGCTGGCCATGATCAATACATTTACAGGCACAATAATGGTCTTTGCATTATAGGAATGGCTCCCACCCATGTGGCTGTG---GATACTGATGCCTTGGTCACTTCAGTGGATTTCAATGTGGGTAAACAAAGCCGGGCTGAAATGAGGGTGTCAGGGAAACGTAAGAATGATGCGTGTGTGCTGGAGCCCACTTCCGCATTGTGCAAAGTTGTCTCC---AATGACACAGCATATATAATCAGGTGTTGTGTGAGGGGTGCTCTGTTGGAAGTCAATGAACGACTTATCAAGGATCCCACCCTTGTCAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCACGGCCAGGTGATTGGAAAAAGGCTTCTTCCACCTTTTTGACCGCCCACGAATAT---GCACTACACACATACACACGGAATCAATCTCATGATTATTCAAATCCTTCGTAA--------------------------------------------------------------------------------------- Pilularia_globulifera_KIIX CTCTACCCTACAGCCAAA---------------------GAGCTT---CCTGAGAGACCACGCCCAGCGATCTATTGCAACTTCTCACACTACTATATCTTAGATTTCATGAAGGAGCGCCATGATCAGTACATTTACAGGCACAATAATGGGTTGTGTGTTATAGGACTAGCTTCAACCCATGTTGCATTG---GAAAAGAGTATTAAGATTCGTGCAGTTGACTTCAATGTTGGGAAGCAAAGCCGAGCTGAAATGAAAGCCACAGGAAAGCGCAAAAACAATGCACATGTGCTGGAGTCCACTTCTGCATTGTGCAAAATCGTTTTTGAAGATGACACGTCGCATGTGATTAGATGTTGCGTAAGGGGCGCTCTTTTGGAAGTTAATGAGTGCCTGATAAATGATCCTTCTCTGCTCAAATCAAAGCCAGCTAGTGAAGGATACATAGCCATTATGATGCCAAGGCCTACTGATTGGACTAAAGCTGCATCAACTTTTTTAACTGCCAAAGAGTAT---TCTGAAAGAAGATCCATTCTAAAAAGTTCAGAGGCAGAATCTTGA------------------------------------------------------------------------------------------------ Pityrogramma_trifoliata_UJTT CTCTACCCCACGTCTCAC---------------------GATCTT---CCGTCTCGTCCTCCGCCAGCTATTCATTCAAATTATTCTCGTTTTTTTGTCGTGGACTTTATGAAAGATGGCCATGATCAGTACATTTACCGACACAATAATGGTCTTTGCATTATAGGCTTGGCTCCTACACATATTGCTGTC---GATAACAATGCCATGGTTACGGCTGTGGATTTTAACGTTGGGAAACAGAACCGAGCTGAGATGAAGGTGTCTGGAAAGCGCAAGAATGATGCTCGTGTTTTGGAGCCTACATCGGCATTGTGTAAGGTGGTTTCC---AATGACGCAGCACATATAGTCAGGTGTTGTGTAAAGGGGGCTTTGCTGGAGGTGAACGATCGCTTAATGAAGGAGCCGATGCTTCTTAACACTAAGGCTGCCAGTGAGGGTTTTATAGCCATCATGATGCCACGGCCAGCAGACTGGAAGAAGGTGGTGTCAAGCTTTTTGACTGCTGAGGAGTAT---GAAGAGCGCAGGGCTTCGTCAAGGAGTAGATCAACACCATGTTAA------------------------------------------------------------------------------------------------ Plagiogyria_japonica_UWOD GTCTACCCTGCAGCGCAA---------------------TTTCTT---CCCCTCCGCCCTCCTCCTGCCATCGAATGCAACTACGCCCACTTCTTCATCGTCGATTTTATGAAGGAGCGCCATGATCAGTACATTTACAGGCACAACAATGGCTTGTGCATTATAGGATTGGCTCCGACCCATATTGCGTTG---GATACCAATGCTTTGGTCACTGCTGTGGATTTCAATGTGGGAAAGCAAAGCCGGGCAGAAATGAAAGCCACAGGAAAGCGCAAGAATGATGCACATGTGTTGGAGCCGACTTCTGCACTATGCAAAGTTGTTTCA---AATGACACGACATACATTATCAGATGCTGTTTAAGGGGGGCTCTTTTGGAAGTCAATGAGCGCCTTATAAAAGAACACTCTCTTCTTAAAACTAAGGCAGCCAGTGAAGGTTACATAGCCATTATGATGCCAAGGCCGGGTGATTGGAAGAAAGCTGCATCAACTTTTTTGACTGGCAAAGAGTAT---GCAGAACGCAGGTCCCTTACAAAAAGTTCAGAGACAACTCCATGA------------------------------------------------------------------------------------------------ Pleopeltis_polypodioides_UJWU CTGTACCCTGCAGCGCAC---------------------GAACTC---CCCCCTCGCCCTCCTCAAGCCATTGTTTCCAACTACGCTCGCTTCTTTGTCGTCGACTTTATGAAGGCAGGCCATGATCAATACATATACAGGCACAACAATGGTCTGTGCATTATAGGACTGGCTCCCACCCATGTGGCTGTG---GATACTGATGCCTCGGTCACTTCAGTGGACTTTAATGTGGGTAAACAAAGCCGGACTGATATGAAGGTGTCAGGGAAACGTAAGAATGATGCTCACGTGCTGGAGCCCACGTCAGCATTGTGCAAAGTTGTCTCC---AATGACACATCGCATATAATCAGGTGCTGTTTGAGGGGTGCTCTGTTGGAAGTCAATGAACGGCTTATCGAGAATCCTACTCTCATCAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCGCGGCCAGGTGATTGGAAAAAGGCTTCTTCGACCTTTTTGACAGCTCATGAATAT---GCGCTACGCACATCCACACGGAATCCATCTAATGACAATTCAAAGCCT---TGA--------------------------------------------------------------------------------------- Polypodium_amorphum_YLJA CTTTACCCGGCAGCGCAC---------------------GACCTC---CCCCTTCGCCCTCCCCAAGCCATTGTTTCCAACTACGCTCGCTTCTTTGTCGTCGACTTTATGAAGGCAGGCCACGATCAATACATTTACAGGCACAACAATGGTCTGTGCATTATAGGAATGGCTCCCACCCATGTGGCTCTG---GATAATGATGCCTTGGTCACTTCGGTGGATTTTAATGTGGGTAAACAAAGCCGGGCTGAAATGAGGGTGTCAGGGAAACGTAAGAACGATGCTCGCGTGCTGGAGCCCACTTCGGCATTGTGCAAAGTTGTCTCC---AATGACACATCATATATAATCAGGTGTTGTTTGAGGGGTGCTCTGTTGGAAGTCAATGAACGGCTTATCAAGGATCCCACCCTTGTCAAAACTAAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Polypodium_glycyrrhiza_CJNT ---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATGGCTCCCACCCATGTGGCTCTG---GATAATGATGCCTTGGTCACTTCGGTGGATTTTAATGTGGGTAAACAAAGCCGGGCTGAAATGAAGGTGTCAGGGAAACGTAAGAACGATGCTCGCGTGCTGGAGCCCACTTCGGCATTGTGCAAAGTTGTCTCC---AATGACACATCATATATAATCAGGTGTTGTTTGAGGGGTGCTCTGTTGGAAGTCAATGAACGGCTTATCAAGGATCCCACCCTTGTCAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCACGGCCATGTGATTGGAAAAAGGCTTCTTCCACCTTTTTGACCGCTCATGAATAT---GCACTACGCACATCCACACGGAAT--------------------------------------------------------------------------------------------------------------------- Polypodium_hesperium_B_IXLH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATGGCTCCCACGCATGTGGCTCTG---GATAATGATGCCTTGGTCACTTCGGTGGATTTTAATGTGGGTAAACAAAGCCGGGCTGAAATGAGGGTGTCAGGGAAACGTAAGAACGATGCTCGCGTGCTGGAGCCCACTTCGGCATTGTGCAAAGTTGTCTCC---AATGACACATCATTTATAATCAGGTGTTGTTTGAGGGGTGCTCTGTTGGAAGTCAATGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Polypodium_hesperium_GYFU ------------------------------------------------------------------------------------------------GTCGTCGATTTTATGAAGGCAGGCCACGATCAATACATTTACAGGCACAACAATGGTCTGTGCATTATAGGAATGGCTCCCACCCATGTGGCTCTG---GATAATGATGCCTTGGTCACTTCGGTGGATTTTAATGTGGGTAAACAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Polystichum_acrostichoides_FQGQ CTTTACCCTGCAGCGCAC---------------------CAACTCCCCCTGGGCCGCCCTCCCCAAGCCATTCATTCCAACTACGCTCACTTCTTTGTCGTCGACTTTATGAAGGAAGGCCATGATCAATACATTTACAGGCACAATAATGGTCTGTGCATTATAGGAGTGGCTCCCACCCATGTGGCTGTG---GATACTGATGTCTTGGTCACTGCGGTGGATTTTAATGTGGGAAAACAAAGCCGGGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCTACTTCGGCATTATGCAAAGTTGTCTCC---CATGACACAACATATATCATCAGATGTTGTTTGAGGGGGGCTCTATTGGAAGTTAACGAACGACTCATGAAGGAGCCCACACTTCTCAAAACTAAGGCAGCCAGTGAAGGTTTTGTAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCTTTTTGACTGCTGAAGAGTATTATGCACAACGTAGGTCTCTTCCAAAAAGCTAG--------------------------------------------------------------------------------------------------------------- Psilotum_nudum_QVMR CTGTACCCTTGTGCTGCA---------------------CACCTC---CCCCTTCGTCCCCTGCCTGCCATCCATTGCAACTTCACTCATTTCTTTGCTGTCGACTTCTTGAAGGAGCATCATGACCAGTATATCTACAGGCATGCTAATGGGTTGTGTGTTATTGGATTAGCTCCGACACATATTGCATTG---CAAAGCCATTCGCCCGTCACTGCCCTGGATTTCAATGTTGGAAAGCAAAGCCGAGTTGAGATGAGAGCAACAGGCAAAAGGAAAAATAATGCATACAAATTGGAGCCAAATTCTGCTCTGTGCAAGGTTGTTTCT---GGTGATACAACTTATATTGTCAGATGTTGTGTGAAAGGAGCACTTTTGGAAGTTAATGAAAGGCTTGTCAAGATGCCTTCCCTGCTTAATTCCCATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pteridium_aquilinum_Pt_Contig6688 ------------------------------------------CTCTCCCCCTTGCTCCCTCCCAAAGCCATCCATTGCAATTATGCTCACTTCTTTGCCGTCGACTTTATGAAGGAAGGCCATGATCAATACATTTATAGGCACAATAATGGTTTATGCATAATAGGAGTGGCTCCTACCCATGTTGCGGTG---AATTCTGATGCCTTGGTCACTGCGGTGGATTTCAATGTGGGAAAACAAAGCCGGGCTGACATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCCACTTCAGCATTGTGCAAAGTTGTCTCC---AATGACACAACATATATAATCAGATGTTGTCTAAGGGGTGCTCTGTTGGAAGTTAATGAACAACTTGTGAAGGAGCCCACACTTCTCAAAACTAAGGCAGCCAGTGAAGGTTTTATAGCCATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pteris_ensiformis_FLTD CTCTACCCTGCGGCTCAT---------------------GATCTT---CCACCACGTCCTCCGCAAGCCGTCCATTCAAATTACGCGCGTTTTTTTGTTGTCGACTTTATGAAGGATGGCCATGATCAATACATTTACAGACACAATAATGGTCTTTGCATTATAGGCCTGGCTCCCACGCACATTGCTGTG---GATAATGATGCGTTGGTTACGGCAGTGGATTTTAATGTCGGGAAACAGAGCCGAGCTGAAATGAAGGTTTCTGGAAAGCGCAAGAGTGATGCCCGCGTGTTGGAGCCTACATCGGCATTATGCAAAGTGGTCTCT---AATGATGCGACATACATAGTCAGGTGTTGTGTAAAGGGGGCTTTGCTGGAAGTGAATGAGCGTCTAATGAAGGAGCCTACGCTTCTCAACACCAAGGCTGCTAGTGAAGGTTTTATAGCCATCATGATGCCAAGGCCAGGCGACTGGAAGAAGGTTTCATCAAGCTTTTTGACTGCAGAAGAGTAT---GCAGAGCGCACGTCTTCAACAAAGTGTAAGTCAACACCATGTTGA------------------------------------------------------------------------------------------------ Pteris_vittata_POPJ ----------------------------------------------------------------------------------------------------------------AGGATGGCCATGATCAATACATTTACAGAC???????????????????????GGCCTGGCTCCTACACACATTGCCGTG---GATAATAATGCCTTGGTTACGACAGTGGATTTCAATGTTGGGAAACAGAGCCGAGCGGAAATGAAGGTTTCTGGAAAGCGCAAGAGTGATGCCCGCATGTTGGAGCCTACATCAGCATTGTGCAAAGTGGTCTCT---AATGATGTGACTTACATAGTCAGGTGTTGTGTAAAGGGGGCTTTGCTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sceptridium_dissectum_EEAQ CTTTACCCATCCGCACAA---------------------GAATTA---CCATCTCGCCCACCGGCTGCCCTTGATTGCAATTTCGTACACTTCTTCGCCGTTGACTTCTTAAAGGAGGGCCATGATCAGTATATCTACAGGCATGCCAACGGGTTGTGTATTGTTGGATTAGCTCCTACACACATTGCATTG---CAGAGCCACGCGTTGGTGACGGCTGTCGACTTCAATGTTGGAAAGCAAAGCCGAGCGGAGATGAGGCCAACTGGCAGAAGGAAAAAAAATGCTCGCACCTTGGAGCCAAATTCTGCTCTGTGCAAAGTTGTTGTA---GGTGATGCAACATATATCATCAGGTGTTGTGTGAAAGGGGCACTCTTGGAAGTAAATGAGCGGCTTGCCAATCAACCTTCTTTGCTTAATTCCCATGCAGCTACAGAAGGGTATGTTGCCATCATCATGCCCAAGCTGGATGACTGGAAGAAACTGCAGAAAACTTTTTTGACCTGTGATGAGTAC---AGAGATCACAGAGTGTCGCATGATGCATCAAGTTAG--------------------------------------------------------------------------------------------------------- Sticherus_lobatus_XDVM ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGATATGAAGGTGACAGGCAAACGGAAAAACAATGCTCGTGTACTGGAGCCAAACTCTGCTCTATGTAAAGTTATCTCG---AACGATGAGACTTACATCGTAAGATGTTGTGTGAAAGGTGCCCTTTTGGAAGTCAATGAGCGCCTTGCAAAAGATCCTTCTTTACTCAGGCTTAAAGCAGCCACCGAAGGTTATATTGCCATCATGATGCCAAGGCCAGATGCTTGGAAGAAAGCTGTTGCAACTTTTTTAAGCAGCAAAGAATAT---GCAGAACAGAGGCGCAGTGGAAAAGATTGACGGACCTTCTGAAATGA---------------------------------------------------------------------------------------------- Thelypteris_acuminata_MROH CTTTACCCTGCAGCCCAC---------------------GATCTC---CCCCGTCGTCCTCCCCAAGCTATTCATTCCAACTACGCTCACTTCTTTGTCGTCGATTTCATGAAGGCCGGCCACGATCAATACATTTACAGGCACAATAACGGTCTGTGCGTTATAGGAGTGGCTCCTACCCATGTTGCTGTG---GATACTGATGCCTTGGTTACTGCGGTGGATTTTAATGTGGGAAAGCAAAGCCGGGCTGATATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCTACTTCGGCATTATGCAAAGTTGTCTCC---AATGACACAACATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAATGAACGACTTATGGGGGAGCCCACACTTCTGAAAACTAAGGCAGCCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCTTCTTGACTGCTGAAGAGTAT---GCAGAACGCAAGTCTCTTCCAAAAAGTTTGACAACACCTTCATGA------------------------------------------------------------------------------------------------ Thyrsopteris_elegans_EWXK CTGTTCCCTGCAGCGCAA---------------------GATCTT---CCCCTCCGCCCTCCCCCTGCCATCGAATGCAACTACGCCCACTTCTTCATCGTCGATTTTATGAAGGAGCGCCATGATCAGTACATTTACAGGCACAACAATGGCTTGTGCATTATAGGATTGGCTCCGACCCATATTGCGTTA---GATACCAATACTTCAGTCACTGCGGTGGATTTCAATGTCGGAAAGCAAAGCCGAACTGAAATGAAGGCCACAGGAAAACGCAAGAATGATGCACATGTGCTCGAGCCTACTTCTGCATTATGCAAAGTTGTTTCG---AATGACACAACATACATCATCAGATGTTGTATAAAGGGCGCTCTTTTGGAAGTCAATGAGCGCCTTATAAAGGAGCCCTCTCTTCTCAGAAATAAGGCAGCCAGTGAAGGTTATATAGCCATTATGATGCCAAGGCCGGGTGATTGGAAGAAAGCTGCATCAACCTTTTTGACTGGCAAAGAGTAT---GCAGAACGCAAGTCT---------------------------TGA------------------------------------------------------------------------------------------------ Tmesipteris_parva_ALVQ CTGTGCCCTTCTGCAGCA---------------------GATCTC---CCCCTTCGCCCCCCAGCTGCCATCCATTGCAACTTCGCTCATTTCTTTGTTGTTGACTTCTTGAAGGAGCGCCATGATCAGTATATCTACAGGCATTCTAATGGGTTGTGTGTTATTGGATTAGCTCCGACACATATTGCATTG---CAAAGCCATTCGCCCATCACTGCCGTGGATTTCAATGTAGGAAAGCAAAGCCGAGCTGATATGAGAGCCACAGGCAAAAGAAAAAACAATGCATACAAATTGGAGCCAAATTCTGCTCTATGCAAGGTTCTTTCT---GGTGATACAGCTTATATTGTCAGATGTTGTGTGAAAGGAGCGCTTTTAGAAGTTAATGAAAGACTTATCAAGCAGCCTTCCCTGCTTAATTCCCATGCAGCTACAGAAGGATATATTGCCATATTAATGCCCAAGCCAGATGACTGGAAGGAAGCACAGAAAACGTTTTTGTGTCTCGACAAGTAC---AGGGATTGCAAAGGGTTGCATGAA---AAACAGTAG--------------------------------------------------------------------------------------------------------- Vittaria_appalachiana_NDUV CTGTATCCTGTAGCAAGA---------------------GATCTT---CCACCTTGCCCGCCGCAGTATATATGCTCCAACTACGCTCATTTCTTTGTAGTCGACTTCATGAAGGACAAACATGATCAATATATATATCGGCACAATAATGGTCTTTGCATTATCGGCCTCGCTCCTACTCACATTGCTCTG---GATCATAATACCATGGTGACTGCTGTGGATTTCAATGTTGGGAAACAGAGCCGAACCGAGATGAAGGTTTCTGGAAAGCGCAAGAATGATGCTCGTGTGCTGGAGCCTGTGTCAGCACTGTGTAAAGTCATTTGC---AATGATTCAACATATGTAGTCAGATGTTGCGTAAGGGGGGCTTTGTTAGAGGTGAATGAGCGCTTAGTAACGGAACCTATGTTGCTGAAAACTAAGGCTGCCAGTGAGGGTTTCATAGCAATCATGATGCCCAGGCCAGTTGATTGGAAGAAAGCTTCATCCAGTTTACTGACCAGTGAAGAATAC---TTAAAGCATAGATCTCTTTCAGAGAATAAGTCATTATTATGTCGAATGGAACAGGCGCAAATTAGTAAGCCTCCTTGTGAATCATAG------------------------------------------------------ Vittaria_lineata_SKYV ------------------------------------------------------------------------------------------------------------------------------------------------AATAATGGTCTTTGCATTATCGGCCTCGCTCCTACTCACGTTGCTCTG---GATCATGATGCCATGGTAACTGCTGTGGATTTCAATGTTGGGAAGCAGAGCCGAACCGAGATGAAGGTTTCTGGAAAGCGCAAGAATGACGCTCGTGTGCTGGAGCCTGTGTCAGCACTGTGTAAAGTCATTTGC---AATGATTCAACATATGTAATCAGATGTTGCATAAGGGGGGCTTTGTTAGAGGTGAATGAGCGCTTAGTAACGGAACCTATGTTGCTGAAAACTAAGGCTGCCAGTGAGGGTTTCATAGCAATCATGATGCCCAGGCCAGTTGATTGGAAGAAAGCTTCATCCAGTTTACTGACCAGTGAAGAATAC---TCAAAGCATAGATCTCTTTCAGAGAAAAAGTCAACATTATGTTGA------------------------------------------------------------------------------------------------ Woodsia_ilvensis_YQEC CTTTACCCTGCAGCGCAC---------------------GATCTC---CCCCTTCGTCCTCCCCAAGCTATTCATTCCAACTACGCTCACTTTTTTGTCGTCGACTTTATGAAGGAAGGCCATGATCAATACATTTACCGGCACAATAACGGTCTGTGCATTGTAGGAGTGGCTTCTACCCACGTTGCTGTG---GATACTGATGCCTTGGTCACTGCGGTGGATTTTAATGTGGGAAAACAAAGCCGGGCTGAAATGAAGGTTTCAGGGAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCTACTTCCGCATTATGCAAAGTTGTCTCC---AATGACACAACATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAACGAACGACTTGCAAAGGAGCCCACACTTCTGAAAACTAAGGCAACCAGTGAAGGTTTCATAGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCTTTTTGACTCCTGAAGAGTAT---GCAGAACGTAGGTCTCTTTCTAAAAAGTTGACACCACCTTCGTGA------------------------------------------------------------------------------------------------ Woodsia_scopulina_YJJY CTTTACCCTGCAGCGCAC---------------------GATCTCCTCCCCCTACGTCCTCCCCAAGCTATTCATTCCAACTACGCTCATTTCTTTGTCGTCGACTTTATGAAGGAAGGCCACGATCAATACATTTACAGGCACAATAACGGTCTGTGCATTATAGGAGTGGCTTCTACCCACATTGCTGTG---GATACTGATGCCTTGGTCACTGCGGTGGATTTTAATGTGGGAAAACAAAGCCGGACTGAAATGAAGGTTTCAGGAAAGCGCAAGAATGATGCCCGTGTGCTGGAGCCTACTTCCGCATTATGCAAAGTTGTCTCC---AATGACACAACATATATAATCAGATGTTGTTTGAGGGGTGCTCTGTTGGAAGTTAACGAACGACTTACACAGGAGCCCACACTTCTGAAAACTAAGGCAGCCAGTGAAGGTTTCATTGCCATTATGATGCCAAGGCCAGGTGATTGGAAAAAAGCTTCATCAACCTTTTTGACTGCTGAAGAGTAT---GCAGAACGCAGGTCTCTTTCTAAAAGTTCGACAACACCTTCATGA------------------------------------------------------------------------------------------------ Zea_mays_GRMZM2G074414_T01 GTCGTCCCCGACGCCGCC---------------------GCCCTC---CCGGCGTCTCCCCCCTCCGCCGTCGAGGCTAACTTCGCGCGCTACTTCGTCGCAGATTTTCTGAATCCAGGGTATGATCAGTATGTGTATCGCCATCCTAACGGATTGTGTGTGGTTGGTTTAGCTCCAGCCCATGTTGTGTTT---AAAGAGGAAGGAGTCATATCCACTGTTGACTTCAATGTCGGCAAGTCAGATCGCAGTGAGATGAAAGTCACAGGAAAACGGAAAAGGAATGCACAACACTTGCAAGAAAATTCGGCATTGTGCAAAGTTTGTGTA---AATGATAAATCTTTTATTGTGAGATGCTGTGTGAAAGGTTCCCTTTTGGAGATCAATGAAAGATTGATCAAACAACCAGATCTTCTTAATACCGCTGCTGACAGGGAAGGATATATAGCAGTCTTCCAGCCGAAACCAGCTGACTGGCTCAAAATTAAGGATAAATTCCTTAGTTATGAGGACTAC---AAGAACTTGAGAGGAGTATGC---TGA------------------------------------------------------------------------------------------------------------------ ; END; BEGIN TREES; Title Gclev; LINK Taxa = Taxa; TRANSLATE 1 Adiantum_aleuticum_WCLG, 2 Adiantum_raddianum_BMJR, 3 Alsophila_spinulosa_GANB, 4 Amborella_trichopoda_scaffold00098.21, 5 Anemia_tomentosa_CQPW, 6 Angiopteris_evecta_NHCM, 7 Aquilegia_coerula_Aquca_00011.1, 8 Arabidopsis_thaliana_gDNA_AT1G75980, 9 Argyrochosma_nivea_XDDT, 10 Asplenium_nidus_PSKY, 11 Asplenium_platyneuron_KJZG, 12 Athyrium_filixfemina_URCP, 13 Athyrium_sp_AFPO, 14 Azolla_caroliniana_cf_CVEG, 15 Blechnum_spicant_VITX, 16 Bolbitis_repanda_JBLI, 17 Botrypus_virginianus_BEGM, 18 Crepidomanes_venosum_TWFZ, 19 Cryptogramma_acrostichoides_WQML, 20 Cryptomeria_japonica_DSXO, 21 Culcita_macrocarpa_PNZO, 22 Cystopteris_fragilis_LHLE, 23 Cystopteris_protrusa_YOWV, 24 Cystopteris_reevesiana_RICC, 25 Cystopteris_sp_XXHP, 26 Cystopteris_utahensis_HNDZ, 27 Davallia_fejeensis_OQWW, 28 Dennstaedtia_davallioides_MTGC, 29 Deparia_lobatocrenata_FCHS, 30 Didymochlaena_truncatula_RFRB, 31 Diplazium_wichurae_UFJN, 32 Dipteris_conjugata_MEKP, 33 Equisetum_diffusum_CAPN, 34 Equisetum_hyemale_JVSZ, 35 Gaga_arizonica_DCDT, 36 Ginkgo_biloba_SGTW, 37 Gymnocarpium_dryopteris_HEGQ, 38 Homalosorus_pycnocarpos_OCZL, 39 Hymenophyllum_bivalve_QIAD, 40 Leucostegia_immersa_WGTU, 41 Lindsaea_linearis_NOKI, 42 Lindsaea_microphylla_YIXP, 43 Lygodium_japonicum_PBUU, 44 Myriopteris_rufa_GSXD, 45 Nephrolepis_exaltata_NWWI, 46 Notholaena_montieliae_YCKE, 47 Nuphar_advena_WTKZ, 48 Onoclea_sensibilis_HTFH, 49 Ophioglossum_petiolatum_WTJG, 50 Ophioglossum_sp_QHVS, 51 Osmunda_javanica_VIBO, 52 Osmunda_sp_UOMY, 53 Parahemionitis_cordata_ZXJO, 54 Peperomia_fraseri_XSZI, 55 Phlebodium_pseudoaureum_ZQYU, 56 Phymatosorus_grossus_ORJE, 57 Pilularia_globulifera_KIIX, 58 Pityrogramma_trifoliata_UJTT, 59 Plagiogyria_japonica_UWOD, 60 Pleopeltis_polypodioides_UJWU, 61 Polypodium_amorphum_YLJA, 62 Polypodium_glycyrrhiza_CJNT, 63 Polypodium_hesperium_B_IXLH, 64 Polypodium_hesperium_GYFU, 65 Polystichum_acrostichoides_FQGQ, 66 Psilotum_nudum_QVMR, 67 Pteridium_aquilinum_Pt_Contig6688, 68 Pteris_ensiformis_FLTD, 69 Pteris_vittata_POPJ, 70 Sceptridium_dissectum_EEAQ, 71 Sticherus_lobatus_XDVM, 72 Thelypteris_acuminata_MROH, 73 Thyrsopteris_elegans_EWXK, 74 Tmesipteris_parva_ALVQ, 75 Vittaria_appalachiana_NDUV, 76 Vittaria_lineata_SKYV, 77 Woodsia_ilvensis_YQEC, 78 Woodsia_scopulina_YJJY, 79 Zea_mays_GRMZM2G074414_T01; TREE gClev_bestREP1 = ((((19:0.05279875,(58:0.14889759,(68:0.02476873,69:0.0507412):0.01349923):0.06839783):0.00800895,(((((75:0.00479295,76:0.0203477):0.21663225,44:0.03515689):0.00553158,2:0.06754622):0.00554371,((1:0.02816415,(53:0.05387285,35:0.02625527):0.02768732):0.00569444,9:0.05111138):1.0E-8):0.01579116,46:0.07168746):0.02554364):0.12893703,((((78:0.01445398,77:0.01651186):0.00812725,((31:0.00799559,(12:1.0E-8,13:1.0E-8):0.00685978):0.00327489,(38:0.00737377,(((((24:0.00401094,(26:0.00200146,22:0.00197568):0.00200283):0.00387082,(25:1.0E-8,23:1.0E-8):0.00618089):0.02081007,37:0.01419832):0.01717522,72:0.02636251):0.00531314,(48:0.01975614,(15:0.03967773,(10:0.0391518,11:0.02718194):0.14497728):0.00911572):0.00540938):0.00229553):1.0E-8):1.0E-8):0.00139027,29:0.03062844):0.0112401,((16:0.06965922,65:0.02354968):0.01125342,(40:0.10939337,(30:0.03841261,(45:0.08816732,(27:0.07051744,(((60:0.04781271,55:0.00684401):0.0092881,(62:1.0E-8,(64:0.00780052,(63:0.00986529,61:1.0E-8):1.0E-8):0.00392808):0.01301416):0.00794671,56:0.03302787):0.02629263):0.04664857):0.01257793):8.8543E-4):0.00558977):0.00602696):0.00799326):0.01357157,((42:0.01549229,41:0.00215266):0.23469294,((57:0.32568623,(3:0.06430765,(73:0.03831871,(14:0.30748608,((71:0.12104747,(32:0.13159032,(39:0.05882762,18:0.12803667):0.07920992):0.01627189):0.01789214,(((52:0.004188,51:0.01646167):0.05451854,(6:0.18616623,((((70:0.02449044,17:0.04304996):0.0900956,(50:0.00308684,49:1.0E-8):0.27227193):0.0559759,(66:0.0440546,74:0.05211127):0.1104095):0.05419222,((34:0.02145132,33:0.04695355):0.48146202,((36:0.0817123,20:0.13885567):0.12219252,((79:0.36951758,(8:0.47259228,(54:0.25125999,7:0.29908508):0.03936812):0.09823559):0.02508705,(4:0.23783174,47:0.24864666):0.06910499):0.22878794):0.39123043):0.04139593):0.03244021):0.08141215):0.07025431,(5:0.25549259,43:0.28770681):0.13488639):0.03774551):0.12612635):0.04146457):0.00788189):1.0E-8):0.00425005,(21:0.03053589,59:0.01887252):0.02488606):0.04965887):0.09076744,(28:0.052225,67:0.04332971):0.01350556); END; begin sets; charset exclude = 19 - 39 46 - 48 193 - 195 331 - 333 520 - 522 541 - 663; charset codonPos1 = 1 - 661 \ 3; charset codonPos2 = 2 - 662 \ 3; charset codonPos3 = 3 - 663 \ 3; end; begin mrbayes; set autoclose = no nowarn = yes; exclude 19 - 39 46 - 48 193 - 195 331 - 333 520 - 522 541 - 663; charset codonPos1 = 1 - 661 \ 3; charset codonPos2 = 2 - 662 \ 3; charset codonPos3 = 3 - 663 \ 3; partition currentPartition = 3 : codonPos1 , codonPos2 , codonPos3; set partition = currentPartition; lset applyto = ( 1 , 2 , 3 ); lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; mcmc; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 663; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 663; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 663; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1430009409756; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 220123094844156900; tell It; setDefaultOrder 61 7 18 3 10 35 1 2 65 44 29 57 0 11 60 26 4 52 63 13 42 30 73 49 68 23 39 33 15 48 53 31 8 27 12 50 22 38 46 62 36 70 41 20 37 69 64 24 78 77 59 56 76 67 75 40 28 54 58 55 72 9 25 21 17 47 45 16 43 6 66 32 14 5 34 51 74 71 19; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 793416248329563876; checksumv 0 2 2398673940 null getNumChars 663 numChars 663 getNumTaxa 79 numTaxa 79 short true bits 15 states 15 sumSquaresStatesOnly 767696.0 sumSquares 767696.0 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 716; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #220123094844156900 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1514.1430009351345.7347009382910156182; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 649; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((34:0.02145132,33:0.04695355):0.48146202,((((70:0.02449044,17:0.04304996):0.0900956,(50:0.00308684,49:1.0E-8):0.27227193):0.0559759,(66:0.0440546,74:0.05211127):0.1104095):0.05419222,(6:0.18616623,((52:0.004188,51:0.01646167):0.05451854,((5:0.25549259,43:0.28770681):0.13488639,((71:0.12104747,(32:0.13159032,(39:0.05882762,18:0.12803667):0.07920992):0.01627189):0.01789214,(14:0.30748608,(73:0.03831871,(3:0.06430765,(57:0.32568623,((21:0.03053589,59:0.01887252):0.02488606,((42:0.01549229,41:0.00215266):0.23469294,((((19:0.05279875,(58:0.14889759,(68:0.02476873,69:0.0507412):0.01349923):0.06839783):0.00800895,(((((75:0.00479295,76:0.0203477):0.21663225,44:0.03515689):0.00553158,2:0.06754622):0.00554371,((1:0.02816415,(53:0.05387285,35:0.02625527):0.02768732):0.00569444,9:0.05111138):1.0E-8):0.01579116,46:0.07168746):0.02554364):0.12893703,((((78:0.01445398,77:0.01651186):0.00812725,((31:0.00799559,(12:1.0E-8,13:1.0E-8):0.00685978):0.00327489,(38:0.00737377,(((((24:0.00401094,(26:0.00200146,22:0.00197568):0.00200283):0.00387082,(25:1.0E-8,23:1.0E-8):0.00618089):0.02081007,37:0.01419832):0.01717522,72:0.02636251):0.00531314,(48:0.01975614,(15:0.03967773,(10:0.0391518,11:0.02718194):0.14497728):0.00911572):0.00540938):0.00229553):1.0E-8):1.0E-8):0.00139027,29:0.03062844):0.0112401,((16:0.06965922,65:0.02354968):0.01125342,(40:0.10939337,(30:0.03841261,(45:0.08816732,(27:0.07051744,(((60:0.04781271,55:0.00684401):0.0092881,(62:1.0E-8,(64:0.00780052,(63:0.00986529,61:1.0E-8):1.0E-8):0.00392808):0.01301416):0.00794671,56:0.03302787):0.02629263):0.04664857):0.01257793):8.8543E-4):0.00558977):0.00602696):0.00799326):0.01357157,(28:0.052225,67:0.04332971):0.01350556):0.09076744):0.04965887):0.00425005):1.0E-8):0.00788189):0.04146457):0.12612635):0.03774551):0.07025431):0.08141215):0.03244021):0.04139593):0.195615215,((36:0.0817123,20:0.13885567):0.12219252,((79:0.36951758,(8:0.47259228,(54:0.25125999,7:0.29908508):0.03936812):0.09823559):0.02508705,(4:0.23783174,47:0.24864666):0.06910499):0.22878794):0.195615215);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #793416248329563876 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 649; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; endTell; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;