#NEXUS [written Sat Apr 25 21:18:05 EDT 2015 by Mesquite version 2.75 (build 566) at Macintosh-99.local/10.0.1.3] BEGIN TAXA; Title SEF_v1.2_wtree.nex; DIMENSIONS NTAX=77; TAXLABELS Adiantum_aleuticum_WCLG Adiantum_raddianum_BMJR Alsophila_spinulosa_GANB Anemia_tomentosa_CQPW Angiopteris_evecta_NHCM Aquilegia_coerula_00211.1 Arabidopsis_thaliana_At_SEF Argyrochosma_nivea_XDDT Asplenium_nidus_PSKY Asplenium_platyneuron_KJZG Athyrium_filixfemina_URCP Athyrium_sp_AFPO Azolla_caroliniana_cf_CVEG Blechnum_spicant_VITX Bolbitis_repanda_JBLI Botrypus_virginianus_BEGM Cedrus_libani_GGEA Crepidomanes_venosum_TWFZ Cryptogramma_acrostichoides_WQML Cryptomeria_japonica_DSXO Culcita_macrocarpa_PNZO Cystopteris_fragilis_LHLE Cystopteris_protrusa_YOWV Cystopteris_reevesiana_RICC Cystopteris_sp_XXHP Cystopteris_utahensis_HNDZ Davallia_fejeensis_OQWW Dennstaedtia_davallioides_MTGC Deparia_lobatocrenata_FCHS Diplazium_wichurae_UFJN Dipteris_conjugata_MEKP Encephalartos_barteri_GNQG Equisetum_hyemale_JVSZ Gaga_arizonica_DCDT Gymnocarpium_dryopteris_HEGQ Homalosorus_pycnocarpos_OCZL Hymenophyllum_bivalve_QIAD Illicium_parviflorum_ROAP Leucostegia_immersa_WGTU Lindsaea_linearis_NOKI Lindsaea_microphylla_YIXP Lygodium_japonicum_PBUU Myriopteris_rufa_GSXD Nephrolepis_exaltata_NWWI Notholaena_montieliae_YCKE Nuphar_advena_WTKZ Onoclea_sensibilis_HTFH Ophioglossum_petiolatum_WTJG Ophioglossum_sp_QHVS Osmunda_javanica_VIBO Osmunda_sp_UOMY Parahemionitis_cordata_ZXJO Peperomia_fraseri_XSZI Phlebodium_pseudoaureum_ZQYU Phymatosorus_grossus_ORJE Pilularia_globulifera_KIIX Pityrogramma_trifoliata_UJTT Plagiogyria_japonica_UWOD Pleopeltis_polypodioides_UJWU Polypodium_amorphum_YLJA Polypodium_glycyrrhiza_CJNT Polypodium_hesperium_B_IXLH Polypodium_hesperium_GYFU Polystichum_acrostichoides_FQGQ Psilotum_nudum_QVMR Pteridium_aquilinum_Contig20647 Pteris_ensiformis_FLTD Pteris_vittata_POPJ Sceptridium_dissectum_EEAQ Sticherus_lobatus_XDVM Thelypteris_acuminata_MROH Thyrsopteris_elegans_EWXK Tmesipteris_parva_ALVQ Vittaria_lineata_SKYV Woodsia_ilvensis_YQEC Woodsia_scopulina_YJJY Zea_mays_GRMZM2G089876_T02 ; END; BEGIN CHARACTERS; Title SEF_v1.2_wtree.nex; DIMENSIONS NCHAR=630; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Adiantum_aleuticum_WCLG ATGGAGGAAGAC------GTATTTACT------TCG------------------------------------CAGAAACCTTCAATG---------CGGACGCGGAAGGTGGCTCCGAAGATGGAGGCTGCTCTCGCTGATGTCAACTACCGTTCACAGGCAGCTCTTGCACGACTAGATGCTTTGGAGAGTGATAATATTGCTATGGAGCTG---GTGGATGTTGAT------GACGATGAAGAAATATCCCTGGAGGATGAAGAA------CATGAGAATCTCGTTTAT---CAAAGGCGGCATCCAAAAGGTGGTAAGAGGGAGACCAGGCAAGCAAGGGCTCTGGAGAAGCTTGCA---ACTGCCAAGAAAACC------------------CGAAGTTTT---CTTGATCTTTTGCATGAGGCCAACTTGGAGGCTTTGCCTAGTCATGTGCCTACATACTTGAGAGCTGCCGTTGGGCCCCCAAGTTCATCTGCCAGACGACACTTCTGCAGCGTCTGTGGTTACTTTGCAAATTATACTTGTACTATTTGTGGGGCTCGATTCTGCTGCATACGGTGCCAGAAGATTCACACAGATACGCGATGCCAAAAGTTTGTTGCATAG Adiantum_raddianum_BMJR ATGGAGGAAGAC------ATCTTTACT------TCT------------------------------------CAGAAACCTTCAATG---------CGGATGAGGAAGGTGGCTCCGAAGATGGAGGCTGCACTGGCTGATGTGAACTATCGCTCACAGGCAGCTCTTGCACGACTAGATGCTTTGGAGAGTGACAATATTGCTTTGGAGCTG---GTGGATGGAGAT------GATGATGAAGACGTTTCCCTGGAGGATGAAGAG------CATGAGAGTCTTGTTTAT---CAAAGGCGGCATCCAAAAGGTGGTAAGAGGGAAACGAGGCAAGCAAGGGCCCTAGTAAAGCTTGCC---AGTGCCAAGAAAACC------------------CGAAGCTTT---CTTGATCTTTTGCGTGAGGCCAACTTGGAGGCTTTACCGATTCATGTTCCTACATACTCGAGAGCTGCCGTTGGGCCCCCAAGTTCATCTGCGAGGCGACACTTCTGCAGCGTCTGTGGTTACTTTGCAAATTATACTTGTACTGTTTGCGGGGCTCGATTCTGCTGCATACGGTGCCAGAAGGTTCATACGGATACACGCTGCCAAAAGTTTGTTGCA??? Alsophila_spinulosa_GANB ATGGAAGACGAT------ATCTTTACT------TCG------------------------------------CGCAGGCCTTCAACT---------CGAACTCGCAAGGTAGCCCCCAAGATGGGGGCTGCTCTCTCCGACATCAACAACCGCTCCCAGGCAGCTCTTGCCCGGCTTGAGGCTTTAGAGAGTGACAATGTTGCTTTGGAGTTG---GTGGATGGTGAT------GATGATGAAGAAGCATCTCTTGATGACGAAGAA------CATGAAAATCTAGTGTAT---CATAGGAGGCACATGAAGGGTGCTAAGAGGGAGACGAGGCAAGCAAGGGCACTTGAGAAGCTTGCA---AGTGCTAAGAAGACC------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATTTGGAAGCTCTGCCGAGTCATGTGCCCACATACTTGAGAGCTGCTGTCGGGCCTCCGAGTTCGTCTGCACGGCGCCACTTTTGCAGTGTCTGTGGGTACTTTGCAAATTACACTTGTTCGACTTGTGGGGCACGGTTCTGCTGCATTAGATGCCAGAAAGTTCATGCCGATACACGTTGTCAAAAGTTTGTTGCC??? Anemia_tomentosa_CQPW ATGGAAGACGAT------GCGTCGGCT------GCA------------------------------------GGCAGAGCTTCTTTA---------CGAATCCGCAAGGTCGCTGCCAAGATGGGAGCCGCTCTATCCGACGCCAACAACCGCTCTCAGGCAGCACTTGCTCGTCTTGATGCTTTAGAGACCGACAATGCTCCAGTTGAGCTC---ATTGATGTTGATGAT---GATGACGACGAAGCATCTATGGATGACGAAGAT---------------CAGGTCTTTAACCAAAGAAGACCAACCAAGGGAGCCAAGAGAGAAACGAGACAGGCAAGAGCATTGGAGAAGCTTGCA---AATGCCAAGAAGGCT------------------AGGAGCTTT---TATGATCTGCTGCAGGAGGCAAATTTGGAGTCATTGCCAAGTTATGTACCTACATATTTGAGAGCTGCTGTTGGCCCCCCAAGCTCATCAGCACGCCGCCATTTTTGCTCAGTGTGTGGATACTT------------------------------------------------------------------------------------------------- Angiopteris_evecta_NHCM ATGGATGACGAT------AACACTATC------CCA------------------------------------TTTCGAGCCTCCACT---------CGCACTCGAAAGATCTCAGCGAGAATGGGAGCTGCACTTGCTGACACCAACACTCGCTCTCAGGCTGCTATTGCACGCCTTGATGCTTTGGAAAGTGACAATGCTGGTATTGAGCTG---ATTGATGCTGAG------GATGAAGACGAGGGTTCACTTGATGATGAAGAC---------------CAAGTGTTCAGCCAGAGAAAGCAAGCTAAAGGTGCAAAGCGAAGGACAAGGCAAGCCAAAGCTTTGGAA------------ACTGCGAGAAAGGCACCA---------------AGGAGTTTT---CTTGAGCTTCTTCAGGAGGGAAATCTTGAAGTATTGCCAACTTATGTGCCTACATACGTGAGAGCTGCTGTTGGC--------------------------------------------------------------------------------------------------------------------------------------------------- Aquilegia_coerula_00211.1 ATGGAACACGAG------GAAATGTCA------GGTGGTGGTGGTGGTGGTGGTGGTGGAGGAGGATCGCTCCGGCGAACATCTGGC---------CGGAATAGAAAAGTTGCTTCTAAAATGGTTGCTGCACTTGCCAGTACGGATAATCGAACACAGGCAGCTCTTGCTCGTCTTGAAGCATTGGAAAATGACAATGCTGCAGCAGAAGCAGCTATTGAAGTTAACTATATTGAAGATGATGATGATTCTTTTGATGACGAAGAA---------GACGATCAAGTATAC---GCAAAAAGGCAGTCTAAGAATACAAAACGAAAAACCAGACAAGCAAAGGCACTGGAT---------------GCAAAGAAAGCCCCC---------------AGGACATTC---ATGGAGCTCTTACACGAGGCAAACCTTGAAGCATTACCTCCACATATCCCCTCCTATTTGAGGGCTGCAGTGGGACCTCCTAGTTCTACCTCCCGTCGCCATTTTTGTGCTGTTTGCGGATTTACAGCCACTTATACATGTGTGAGGTGTGGAATGCGCTTTTGTTCATGCCGTTGCCAAGTTATACACAATGACACTCGTTGCCAGAAATTTGTGGCCTAA Arabidopsis_thaliana_At_SEF ATGGAGGAAGAG------ATGTCGAAC---------------------------------------------CGTCGAGTATCAAAT---------CGGACTCGTAAGGTCGCTACGAAGATGGCGGCGGCTCTTACAAGCAACGACAATCGAACTCAGGCTGCTATAGCTAGGCTAGAGGCTTTAGAGAACGATAATGGTGCTATTGAAGTG---ATAGATTTGAAC------GATGATGAAGAAGCTTCTCTTGATGAAGATGAT------------GATCTCGGTTACTTACAGAAGAAGCAACACAAAGGATCAAAGCGTAAAACTCGACAAGCGAAAGCTTTAGAA---------------GCTCGTAAAGCTCCT---------------AAATCCTTC---CTTGAGCTATTGCAAGAGGCAAATTTGGAGTCTTTACCGTCGCATGTACCGACTTACTTGAAAGCAGCAGTTGGACCTCCGAGTTCGTCTTCTCGTCGCTATTTTTGCTCGGTTTGTGGTTACATTGCAGGTTACAATTGTTGTTTATGTGGGATGAGGTTTTGTTCTATTCGTTGTCAAAATATTCACAAGGATACTCGTTGTCAGAAATTTGTTGCATAG Argyrochosma_nivea_XDDT ATGGAGGACGAC------GTCTTTACT------TCG------------------------------------CGGAAACCTTCAACC---------CGAACGCGGAAGATGGCTCCGAAGATGGAGGCCGCTCTCGCTGATGTCAACAACCGCTCACAGGCAGCTCTTGCTCGACTTGATGCTTTGGAAAATGACAATATTGCTATGGAGCTG---GTGGATGTTGAT------GACGATGAAGAAGCATCCCTGGAGGATGAAGAA------CACGAGAATCTTGTTTAT---CAAAGGCGGCATCCAAAAGGTGGTAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACC------------------CGAAGCTTT---CTTGATCTTTTGCATGAGGCTAATCTGGAAGCTTTGCCTAGTCATGTGCCAACATACTTAAGAGCTGCTGTAGGCCCCCCTGGCTCATCTGCAAGACGACATTTCTGCAGCGTGTGTGGTTTCTTTGCAAATTATACTTGTGTTACTTGTGGGGCTCGATTCTGCTGCATTCGGTGCCAGAAGGTTCACACAGATACAAGATGCCAAAAGTTTGTGGCGTAG Asplenium_nidus_PSKY ATGGAAGACGAT------CTTCTTACT------TCA------------------------------------CGCAGACCATCGACT---------CGAACTCGCAAGGTGGCTCCCAAAATGGAGGCTGCCCTTGCTGATGCCAACAGTCGATCACAGGCAGCTATTGCCAGGCTTGATGCTCTGGAGAGCGACAATGTTGCTATTGACCTG---ATGGACGTTGAC------GATGATGATGAAGCATCTCTTGAGGATGAAGAA------CACGAGAATCTAGTTTAT---CAACGAAGGCACCCCAAAGGTGGAAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTCGCAACAACCGCCAAGAAAACT------------------CGCAGTTTT---CTGGATCTTCTACAGGAGGCCAATTTGGAGGCTCTGCCTCGTCACGTGCCGACGTACTCGCGGGCCGCTGTGGGGCCGCCGAGCGCGTCGGCGAGGCGGCACTTCTGCAGCGTGTGCGGCGATTTCTCGAACTACACGTGCACCGTATGCGGGGCGCGGTTCTGCTGCGTGCGGTGTCAGAAGATCCACACGGATACTCGGTGCCAAAAGTTTGTGGCGTAG Asplenium_platyneuron_KJZG ATGGAAGACGAT------CTTTTTACT------TCA------------------------------------CGAAGGCCGTCAACTCGAACACG?CGAACACGCAAGGTGGCTCCAAAAATGGAGGCTGCCCTCGCTGATGTCAACAATCGCTCGCAGGCAGCTATTGCACGGCTTGATGCCCTGGAGAGTGATAATGTTGGTATTGACATG---ATGGATGTTGAC------GACGATGATGAAGCATCTTTTGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACCCCAAGGGTGGGAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGAAGTTTT---CAAGATCTTTTGCAGGAGGCAAATTTGGAGGGTCTGCCTAGTCATGTGCCTACATACTTGAGAGCTGCTGTGGGGCCACCAAGCTCATCAGCAAGACGGCACTTTTGCAGTGTTTGTGGTTACTTCTCAAATTATACGTGCACCGTATGTGGGGCACGATTCTGTTGCATACGGTGTCAAAAGATCCACACTGATACACGGTGTCAAAAGTTTGTGGCA??? Athyrium_filixfemina_URCP ATGGAAGATGAT------CTTTTTACT------TCA------------------------------------CGGAGACCTTCAACT---------CGAACACGCAAGGTGGCTCCGAAAATGGAGGCTGCTCTCTCTGATGTCAACAATCGTTCACAGGCAGCTATTGCCCGCCTTGATGCTTTGGAGAGTGATAGTGTTGCTATGGACCTG---ATTGATGGTGAC------GATGATGAAGAAGCGTCTCTCGAGGATGAAGAA------CATGAGAATCTCGTTTAT---CAAAGAAGACATGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTCGATCTTTTACAGGAGGCCAATTTGGAGGCTCTGCCTAGTCATGTGCCTACATACTTGAGAGCTGCTGTTGGACCCCCGAGCTCATCTGCCAGACGGCACTTCTGCAGTGTTTGTGGTTATTTCGCAAATTATACTTGCACCATATGTGGGGCACGATTCTGCTGCATTCGATGTCAAAAAGTCCATACTGATACACGATGTCAAAAGTTTGTGGCATAG Athyrium_sp_AFPO ATGGAAGATGAT------CTTTTTACT------TCG------------------------------------CGGAGACCTTCAACT---------CGAACACGAAAGGTGGCTCCAAAAATGGAGGCTGCTCTCTCCGATGGCAACAATCGCTCACAGGCAGCTATTGCCCACCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGATGGTGAC------GATGATGAAGAAGCGTCTCTCGAGGATGAAGAA------CATGAGAATCTCGTTTAT---CAAAGAAGACATGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTCGATCTTTTACAGGAGGCCAATTTGGAAGCTCTGCCTAGTCATGTGCCTACATACTTGAGAGCTGCTGTTGGACCCCCGAGCTCATCTGCCAGACGGCACTTCTGCAGTGTTTGTGGTTATTTCGCAAATTATACTTGCACCATATGTGGGGCACGATTCTGCTGCATTCGATGTCAAAAAGTCCATACTGATACACGATGTCAAAAGTTTGTGGCATAG Azolla_caroliniana_cf_CVEG ATGGAAGACGAT------ATCTTTGCT------CCA------------------------------------CGGCGGCCTTCTACA---------CGGACCCGCAAGGTAGCTGCCAAGATGGGGGCTGCATTAGCTGACATTAACAACCGATCACAGACAGCCCTTGCTCGGCTTGATGCTTTGGAAAGTGACAATGTTGCTATGGAGTTG---GTAGATGGTGAT------GACGATGAAGAGGCTTCTCTTGATGATGAAGAA------AATGAAAATCTAGTGTAT---CAGCGAAGGCATGTAAAAAATTCCAAGAGGGAGACAAGACAAGCAAGAGCCATAGAGAAGCTTGCC---ACTGCCAAGAAGACT------------------CAGAGTTTC---CATGATCTTTTGCTTGAGGCCAACTTAGAATCTTTACCAAGCCATGTACCTTCTTATTTGAGAGCTGCAGTTGGCCCTCCGAGTTCGACTGCACGGCGTCACTTCTGCAGTGTGTGTGGGTACTTTGCTAATTATACATGCGTTGTTTGTGGAGCTAGATTCTGTTGTATCCGATGCCAGAAAGTTCATCTCGATACTCGATGCCAA--------------- Blechnum_spicant_VITX ATGGAAGACGAT------GTTTTTACT------TCG------------------------------------CGGAGACCTTCAACT---------CGAACACGCAAGGTGGCTCCAAAAATGGAGGCGGCCCTCGCTGATGTCAACAGTCGCTCACAGGCAGCGGTTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGATGGTGAC------GATGATGAAGAAGCGTCTCTCGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTCGACCTTTTGCAGGAGGCCAATTTGGAGGCTCTGCCTAGTCATGTGCCTACATACTTGAGAGCTGCTGTGGGACCCCCGAGCTCATCTGCCAGGCGGCACTTCTGCAGTGTTTGTGGTTATTTCGCAAATTATACTTGCACCATATGCGGGGCACGATTCTGCTGCATTCGATGTCAAAAAGTCCATACTGATACACGGTGTCAAAAGTTTGTGGCATAG Bolbitis_repanda_JBLI ATGGAAGATGAG------CTTTTTTCT------TTG------------------------------------CGGAGACCTTCAACT---------CGAACACGCAAGGTGGCTCCAAAAATGGAGGCCGCTCTTGCTGATGTCAACAATCGCTCACAGGCAGCTCTTGCCCGCCTCGATGCTTTGGAGAGTGACAATGTTGCTATGGACGTG---GTGGATTGTGAT------GATGATGAAGAAGCATCTCTGGAGGATGAAGAA------CATGAAAATCTAGTTTAT---CAAAGAAGACACCCCAAGGGTGGAAAGAGGGAGACCAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACCGCGAAGAAGACT------------------CGGAGTTTT---CTTGATCTTTTGCAGGAGGCCAATTTGGAATCTCTGCCTAGTCATGTGCCTACATACTTGAGAGCTGCTGTTGGACCCCCAAGCTCATCTGCCAGGCGATACTTCTGTAGTGTTTGTGGTTATTTCGCAAATTATACTTGCACCATATGCGGGGCACGATTCTGCTGTATTCGATGTCAAAAAGTTCATACTGATACACGATGTCAAAAGTTTGTGGCATAA Botrypus_virginianus_BEGM ATGGATGATGATCCGCCCGTATTCACC------CCC------------------------------------CGTCGGGCCTCTTCT---------CGAATGCGCAAGGTTGCTTCCAAGATGGAAGCAGCACTTGTAGACACCAACAATCGAGCTCAGGTTGCTTTGGCTCGCCTCGACGCTTTGGAGAGTGACAATGTTGGTGTCGATGTC---GTTGATGTCGAT------GATGACGAAGACGCCTCACTAGATGAAGATGAC---------------CAAGTCTTTAGTCAGAAAAGGCAACCCAAAGGTTCAAAACGTAAGACAAGGCAAGCAAAAGCATTGGAGAAACTTGAA---AGTGCTCGAAAAGCACCA---------------AGGAATTTCATCATCGAACTTCTTCAGGAGGCAAATTTGGAAGCATTGCCGCCTCATGTTCCCACATACACAAGAGCTGCTGTTGGAACCCCAAGCCTATCTGCTCGTCGGCATTTTTGTTCAGTGTGTGGATATTTTGCAAATTACACTTGTACATTATGTGCTGCACGTTTCTGCTCCTCTCGCTGCCAAAAGGTCCATAGTGACACACGGTGCCAAAAGTTTGTTGCCTAA Cedrus_libani_GGEA ATGGAGGATGAAGCTGTTAGCACTGCT------GTG------------------------------------CACCGGTCATCTACT---------CGTATTCGTAAGATTGCACCTAAGATGAATGCTGCTTTGGCAAGCGCTGATAACCGGACACAGGCTGCTCTTGCCCGCCTTGATGCCTTGGAGAATGACAATGCTGCTGTTGAGGTG---GTTGTTGTTGAT------GATGATGATGATGCATCTCTTGATGAAGATGAA----------------??GCATTTGGTCAGAAGAAGCAATCAAGGAGCTCAAAGCGCAGAACAAGGCAAGCTAAAGCTCTTGAG------------ATTGCAAAGAAGGCACCT---------------AGAAATTTT---ATGGAGCTATTACAGGAGGCAAATTTGGAAGCTTTACCTGCCCATGTACCAACATATTTGCGAGCTG????--------?????????????????????ATTTCTGTAGTGTTTGTGGCTACATTGCTTCTTACACATGTGTACAATGTGGAGCTCGTTTTTGCTCATGTCGATGCCAAGTAATTCATACTGATACACGCTGTATGAAATTTGTTGCTTGA Crepidomanes_venosum_TWFZ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGAGCTA---ATTGATGCTGAT------GATGATGATGAAGCATCCCTGGATGATGAGGAC---------------CAAGGTTTCAGTCAGAGGAAGCAGCTGAAGGGAGCAAAAAGGAAGACAAGGCAAGCGAGGGCATTAGAGAAGCTTGAA---AGTGCCAAAAAGACA------------------AGAAGTTTT---CTTGATTTGCTTCAGGAGGCGAATCTGGAAGCA????????????????????????????????????GTTGGTCCCCCAAGTTCATCTGCACGTCGTCACTTCTGCACTGTTTGTGGCTTCTTTGCAAGTTATACATGCACTCTGTGTGGAGCACGGTTTTGTTGTCGCCGCTGCCAAAAAATTCATGGTGATACACGTTGCCAAAAGTTTGTAGCCTAG Cryptogramma_acrostichoides_WQML ------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTTGCCCGCCTTGATGCGTTGGAGAGTGACAACGTTGCTATGGAGCTG---GTGGATGTTGAT------GATGATGAAGAGGCATTCTTGGAGGATGAAGAA------CATGAGAATCTTGTTTAT---CAAAGAAGGCATCCGAAAGGTGGTAAGAGGGAGACTAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACC------------------CGAAGTTTT---CTTGATCTTCTGCATGAGGCCAATTTGGAGGCTTTGCCTAGTCACGTGCCCACATACTTGAGAGCTGCTGTTGGCCCCCCTAGCTCATCGGCCAGACGATATTTTTGCAGCGTCTGCGGTTATTTTGCAATTTATACTTGTACTGTTTGTGGGGCTCGATTTTGCTGCATTCGGTGTCAGAAGGTCCATACTGATACACGATGCCAAAAGTTTGTTGCATAG Cryptomeria_japonica_DSXO ATGGAGGACGAAGGAGGAAGTATTGCA---------------------------------------------CGTCGCTCATCAACC---------CGTATTCGCAAAATTGCACCCAAAATGGGTGAAGCTCTTTCCAATGCTGATAACCGGACACAGGCTATTCTCGCTCGCCTTGATGCTTTGGAGAATGACAATGCTGCTGTGGAGGTG---GTTGACATTGAT------GATGATGAGGATGCATCTCTTGATGAAGAAGAG---------------CAAGTTTTTACCCAAAAAAAGCATTCAAGAAGCTCAAAGCGTAAAACAAGGCAAGCTAAAGCTGTGGAG------------AATGCAAAGAAGGCACCA---------------CAGACTTTT---ATGGAGTTATTACAAGAGGCAAATTTGGAAGCTACACCTCCCCACGTACCAACATATTTGAGAGCTGCTGTAGGTCCTCCCAGCTCCACAGCTCGGCGGCATTTCTGCAGTGTTTGTGGCTATATAGCTCCTTACAGCTGTGTGCAGTGTTCATCTCGATTTTGCTCAGTCCGATGCCAAAGAATACATTCAGATACACGTTGCTTGAAGTTTGTTGCTTGA Culcita_macrocarpa_PNZO ATGGAAGACGAT------CTCTTTACT------TCG------------------------------------CGGAGACCTTCAACT---------CGAACTCGCAAGGTAGCCCCCAAGATGGGGGCTGCTCTCTCCGACGTCAACAACCGCTCCCAGGCAGCTCTCGCCCGGCTTGATGCTTTAGAGAGCGACAATGTTGCTGTTGAGCTG---GTGGATGGTGAT------GATGATGAAGAAGCATCTCTTGACGACGAAGAA------CACGAGAATCTAGTGTAT---CATAGGAGGCACACAAAGGGCGCTAAGAGGGAGACAAGGCAAGCAAGGGCACTGGAGAAGCTTGCG---AGTGCCAAGAAGACC------------------CGTAGTTTT---CTCGATCTTTTACAGGAGGCCAATTTGGAAGCTATGCCGAGTCATGTACCCACATACTTGAGAGCTGCCGTCGGGCCCCCGAGCTCGGCTGCACGGCGCCACTTTTGCAGTGTCTGTGGGTACTTTGCAAATTATACTTGTACTGCTTGTGGGGCTCGGTTCTGCTGCAGTCGATGCCAGAAAGTTCATGCGGATACACGGTGTCAAAAGTTCGTTGCATAG Cystopteris_fragilis_LHLE ---------------------------------------------------------------------------------TCGACT---------CGAACACGCAAGGTGGCTCCAAAAATGGAGGCGGCTCTCTCTGATGTC---AATCGCTCGCAGGCAGCTCTTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGAGGTTGAC------GATGATGAAGAAGCGTCTCTGGAGGATGAAGAA------CATGAGAATCTGGTTTAT---CAAAGAAGACACGCCAAGGGTGGTAAGAGGGAAACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACC------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTTCCAAGTCACGTGCCGACATACGTGAGAGCTGCTGTTGGACCTCCAAGCTCATCTGCCAGGCGGCACTTCTGCAGTGTTTGTGGTTATTTTGCGAACTATACTTGCACTAAATGTGGGGCACGATTCTGCTGCATTCGATGTCAAAAAGTCCATACAGATACACGGTGTCAAAAGTTTGTGGCG??? Cystopteris_protrusa_YOWV ATGGAAGATGAT------CTTTTCACT------TCG------------------------------------CGGAGATCTTCGACT---------CGAACACGCAAGGTGGCTCCAAAAATGGAGGCAGCTCTTTCTGATGTCAATAATCGCTCACAGGCAGCTCTTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGAGGTTGAC------GATGATGAAGAAGCGTCTCTGGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACC------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTTCCAAGTCACGTGCCGACATACACGAGAGCTGCTGTTGGACCTCCAAGCTCATCTGCCAGGCGGCACTTCTGCAGTGTTTGTGGTTATTTTGCGAACTATACTTGCACTAAATGTGGGGCACGATTCTGCTGCATTCGATGTCAAAAAGTCCATACTGATACACGGTGTCAGAAGTTTGTGGCGTAG Cystopteris_reevesiana_RICC ATGGATGATGAT------CTTTTTACT------TCG------------------------------------CGGAGATCTTCGACT---------CGAACACGCAAGGTGGCTCCAAAAATGGAGGCGGCTCTTTCTGATGTCAATAATCGCTCACAGGCAGCTCTTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGAGGTTGAC------GACGATGAAGAAGCGTCTTTGGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACC------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATCTGGAGGCTCTTCCAAGTCACGTGCCGACATACGTGAGAGCTGCTGTTGGACCTCCAAGCTCATCTGCCAGGCGGCACTTCTGCAGTGTTTGTGGTTATTTTGCAAACTACACTTGCACTAAATGTGGGGCACGATTCTGCTGCATTCGATGTCAAAAAGTCCATACTGATACACGGTGTCAAAAGTTTGTGGCGTAG Cystopteris_sp_XXHP ATGGAAGATGAT------CTTTTCACT------TCG------------------------------------CGGAGATCTTCGACT---------CGAACACGCAAGGTGGCTCCAAAAATGGAGGCAGCTCTTTCTGATGTCAATAATCGCTCACAGGCAGCTCTTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGAGGTTGAC------GATGATGAAGAAGCGTCTCTGGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACC------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTTCCAAGTCACGTGCCGACATACACGAGAGCTGCTGTTGGACCTCCAAGCTCATCTGCCAGGCGGCACTTCTGCAGTGTTTGTGGTTATTTTGCGAACTATACTTGCACTAAATGTGGGGCACGATTCTGCTGCATTCGATGTCAAAAAGTCCATACTGATACACGGTGTCAGAAGTTTGTGGCGTAG Cystopteris_utahensis_HNDZ ------------------------------------------------------------------------------------------------------------GTGGCTCCAAAAATGGAGGCGGCTCTCTCTGATGTCAATAATCGCTCACAGGCAGCTCTTGCCCGCCTTGATGCTTTGGAAAGTGACAATGTTGCTATGGACCTG---ATGGAGGTTGAC------GACGATGAAGAAGCGTCTTTGGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACGCCAAGGGTGGTAAGAGGGAGACAAGGCAA????GGGCTCTGGAAAAGCTTGCA---ATTGCCAAGAAAACT------------------CGGAGTTTT---CTTGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTTCCTAGTCACGTGCCGACATACGTGAGAGCTGCTGTTGGACCTCCAAGCTCATCTGCCAGGCGGCACTTCTGCAGTGTTTGTGGTTATTTTGCGAACTATACTTGCACTAAATGTGGG------------------------------------------------------------------??? Davallia_fejeensis_OQWW ATGGAAGACGAT------CTTTTTACT------TCA------------------------------------CGGAGACCTTCAACT---------CGAACACGTAAGGTGGCTCCAAAAATGGAGGCCGCTCTCTCTGATGTCAACAATCGCTCACAGGCAGCTCTTGCCCGCCTTGATGCCCTGGAGAGTGACAATGTTGCTATGGACCTG---GTGGATGTCGAT------GATGATGAAGAAGCATCTCTTGAGGACGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACCCTAAGGGTGGTAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTCGATCTTTTACACGAGGCCAATCTGGAGGCTCTGCCCAGTTATGTGCCGACATACTTGCGAGCTGCTGTTGGACCCCCAAGCTCATCTGCCAGGCGACACTTCTGTGGTGTGTGTGGTTATTTTGCAAATTATACATGCACTGTATGTGGGGCACGATTCTGCAGCGTCCGGTGCCAAAAAGTTCATACCGATACACGGTGTCAGAAGTTTGTGGCATAG Dennstaedtia_davallioides_MTGC ATGGAAGATGAC------CTTTTTACT------TCT------------------------------------CGGAGACCTTCGACT---------CGAACACGCAAGGTGGCCTCAAAAATGGAGGCTGCTCTCTCTGATGTCAACAATCGTTCACAGGCAGCTCTTGCCCGCCTTGATGCTTTGGAGAGCGACAATGTTGCTATGGAGCTG---GTGGATGGTGAT------GATGATGAAGAGGCATCTCTTGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Deparia_lobatocrenata_FCHS ATGGAAGATGAT------CTTTTTACT------TCG------------------------------------CGGAGACCTTCAACT---------CGAACACGCAAGGTGGCTCCAAAAATGGAGGCGGCCCTCTCTGATGTCAACAATCGCTCACAGGCAGCTGTTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGATGGTGAC------GATGATGAAGAAGTGTCTCTCGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------??? Diplazium_wichurae_UFJN ATGGAAGATGAT------CTTTTTACT------TCG------------------------------------CGGAGACCTTCAACT---------CGAACACGAAAGGTGGCTCCAAAAATGGAGGCTGCTCTCTCTGATGTCAACAATCGCTCACAGGCAGCTGTTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGATGGTGAC------GATGATGAAGAAGCGTCTCTCGAGGATGAAGAA------CATGAGAATCTCGTTTAT---CAAAGAAGACATGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTCGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTGCCTAATCATGTGCCTACATACTTGAGAGCTGCTGTTGGACCCCCGAGCTCATCTGCCAGACGGCACTTCTGCAGTGTTTGTGGTTATTTCGCAAATTATACTTGCACCATATGTGGGGCACGATTCTGCTGCATTCGATGTCAAAAAGTCCATACTGATACACGATGTCAAAAGTTTGTGGCATAG Dipteris_conjugata_MEKP ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACT????????????????------------------GTC---GTTGATGCTGAT------GATGATGAGGAAGCATCCTTTGATGATGAAGAC------CAAGAGGGATTTGTGTTCACTCAGAGGAAGCATCCAAAAGGAGCCAAGAGGAAGACAAGACAGGCTAGGGCGTTGGAGAAACTTGAG---AGTGCCAGAAAGACA------------------AGGAGTTTT---CTTGACCTGCTTCAAGAGGCAAAATTGGAAGCATTGCCAGCTCATGTACCCACATATCTGAAAGCTGCTGTTGGCGCCCCAAGCTCATCTGCGCGACGCCATTTTTGCACGGTTTGTGGATATTTTGCGCATTACACTTGCAGTGTATGTGGGGCAAGGTTCTGTTGCTGCCGCTGTCAGAAAATTCATAGTGATACACGGTGCCAAAAGTTTGTTGCG??? Encephalartos_barteri_GNQG ATGGATGACGATGCGGTTGGCATTGCC------TCA------------------------------------CGCCGTTCGTCCACC---------CGTATCCGCAAGGTTGCGCCCAAGATGAGTGCGGCTCTTGCCAGTGCCGATAACCGGACGCAGGCTGCTCTTGCTCGTCTTGATGCTTTGGAGAATGATAATGCTATTGTTGAGTTG---GTTGATGTTGAT------GATGATGAAGATGCATCTCTTGATGAAGAAGAT---------------CAAGTGTTCAGTCAAAGAAAACAATCAAGAAGTTCAAGACGCAAGACAAGGCAATCTAAAGCCCTGGAG------------AGTGCAAAGAAGGCATCT---------------AGATCTTTT---ATGGAGCTGTTACAAGAGGCCAATCTGGAATCTTTGCCTGCCCATGTACCAACATATTTGAGAGCTGCTGTTGGCCCTCCCAGTTCAACATCTCGCCGGCATTTCTGTAGTGTTTGTGGTTACATTGCCCCTTACACATGTGTACAATGTGGGGCACGATTTTGTTCGTGTCGATGTCAAGCCATACACAGTGATACACGCTGTATGAAGTTTGTTGCTTGA Equisetum_hyemale_JVSZ ATGGAGGAGGAC------GTAGTGGGA------AGCTCCGGT------------------------------AGGCGGGCCTCTTCT---------CGGGCCCGCAAGGTCGCTCCAAAGATGGGAGCTGCTCTCTCCGACTCCAACAATCGATCCCTGGCAACACTTTCACGTCTTGATGCGCTAGAGAGTGACAATGTTGCTGTGGAGGTT---GCTGACCCAGAT------GATGCTGAAGAGGCATCCCTGGATGATGAGGAT------------CAACAAGTTTTCACCCAAAAAAAGTTGGCAAAGAGCGCAAAGCGTAAGACAAGGCAGGCCAAAGCATTAGAGAAACTCGAG---AATGCAAAGAAGGCGCCA---------------AGGAACTTC---TTAGAGCTTCTCCATGAGGCGAATCTTGAGGCCGTTCCATCACACATTCCGACATACCATAGAGCGGCTGTCGGTCCTCCGAGCTCTGCTGCTCGCCGCCATTTTTGCAGTGTTTGTGGATACTTTGCAAATTATACATGCACGTTATGTGGGGCAAGGTTTTGTTCTTGCCGTTGCCGGAAGATGCACAGTGACACGCGGTGCCAGAAGTTTGTGTCT??? Gaga_arizonica_DCDT ATGGAGGACGAC------GTCTTTACT------TCA------------------------------------CGGAAACCTTCTACT---------CGGACGCGAAAGGTGGCTCCGAAGTTGGAGGCTGCTCTAGCCGACGTGAACAACCGCTCACAGGCAGCTCTTGCACGACTTGATGCTTTGGAGAGTGACAATATTGGTATGGAGCTG---GTGGATGTTGAC------GACGATGAAGAAGTATCCCTGGAGGATGAAGAA------CATGAGAATCTTGTTTAT---CAAAGGCGGCATCCGAAAGGTGGAAAGAGAGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACC------------------CGAAGTTTT---CTTGATCTTTTGCATGAGGCTAATTTGGAAGCGTTGCCAAGTCATGTGCCGACATACTTGAGAGCTGCAGTAGGGCCCCCGAGCTCATCTGCAAGACGACATTTCTGCAGCGTGTGCGGTTACTTCGCAAACTATACCTGTGTTATTTGTGGGGCTCGATTCTGCTGCATTCGGTGCCAGAAGGTTCACACAGATACGCGATGCCAGAAGTTTGTTGCA??? Gymnocarpium_dryopteris_HEGQ ATGGAAGATGAT------ATTTTTACT------TCG------------------------------------CGGAGACCTTCGACT---------CGAACACGCAAGGTGGCTCCAAAAATGGAGGCGACTCTCTCTGATGTCAACAATCGCTCACAGGTAGCTCTTGCCCGCCTTGATGCTTTGGAGAGCGACAATGTTGCTATGGACCTG---ATGGATGTTGAC------GACGATGAAGAAGCGTCTCTCGAGGATGAAGAA------CACGAGAATCTAGTTTAT---CAAAGAAGACACCCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTGCCTAGTCACGTGCCTACATACTTGAGAGCTGCTGTTGGACCTCCAAGCTCATCTGCCAGGCGGCACTTCTGCAGTGTTTGTGGTTATTTTGCAAACTATACTTGCA-----------------------------------------------------------------------------??? Homalosorus_pycnocarpos_OCZL -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------????CCTG---ATGGATGTTGAT------GATGATGAAGAAGCGTCTCTCGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACATGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAAAAAACT------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTGCCTAGTCATGTGCCTACATACTTGAGAGCTGCTGTTGGACCCCCGAGCTCATCTGCCAGACGGCACTTCTGCAGTGTTTGTGGTTATTTCGCAAATTATACTTGCAGCGTATGTGGGGCACGATTCTGTTGCATTCGATGTCAAAAAGTCCATACTGATACACGGTGTCAAAAGTTTGTGGCATAG Hymenophyllum_bivalve_QIAD ------------CCCCCTGCCTTCGCT------CCA------------------------------------CGTCGAGCCTCAAAT---------CGCACCCGCAAGGTCGCACCCAAAATGGGAGCTGCCCTCTCTGACGCCAATAATCGTTCACAGGCAGCTCTTGCCCGTCTTGATGCTTTAGAGACTGATAATGTTATCATTGAGCTA---GTTGATGCTGAT------GATGATGATGAAGCATCCCTTGATGATGAGGAC---------------CAAGTATTCAGTCAGAGGAAGCAGCTCAAGGGAGCTAAAAGAAAGACAAGGCAAGCAAGGGCATTGGAGAAACTTGAA---AGTGCCAAAAAGACC------------------AGAAGTTTT---CTTGATTTGCTTCAGGAGGCAAAGTTGGAAGCATTACCAGCCCATGTACCTACATATCTGAGAGCTGCTGTTGGCCCTCCAAGTTCGTCCGCACGTCGTCACTTCTGCACTGTTTGTGGATTCTTTGCAAATTATACTTGCACTATATGCGGAGCACGGTTCTGTTCATGCCGCTGCCAAAAAATTCATAGTGATACACGTTGCCAAAAATTTGTAGCATAG Illicium_parviflorum_ROAP ------------------------------------------------------------------------------------------------------------------------------------------------------CGGACTCAGGCAGCACTTGCTCGTCTTGATGCCTTGGAGAATGATAATGCTGGACTCGAGATG---ATAGAACTTAAT------GATGATGAAGACGCTTCTCTTGATGAAGAAGAT---------------CAAGTTTACATACAGAAAAGGCAGTCTAAGAACACAAAGCGCAAAACTAGGCAGGCAAAAGCCCTTGAG------------AATGCAAAGAAAGCACCC---------------CGAACCTTT---ATGGAGCTGTTACAAGAGGCAAATTTGGAATCCTTGCCCCCGCATGTTCCGTCCTATCTGAGAGCAGCAGTGGGTCCCCCAACCTCAACCTC???????????????????GTCTGCGGATTCACTGCCAACTATACATGTATACGGTGCGGGATACGCTTCTGTTCATGTCGTTGCCAGGTTATACACAATGA---------------------------- Leucostegia_immersa_WGTU ATGGAAGATGAC------GTTTTTTCT------TCG------------------------------------CGGAGACCTTCAACT---------CGAACACGTAAGGTGGCTCCAAAAATGGAGGCAGCTCTATCTGATGTCAACAATCGCTCCCAGGCAGCTCTTGCCCGACTTGATGCTTTGGAGAGTGATAATGTTGCAGTGGACCTG---CTTGATGGTGAT------GATGATGAAGAAATGTCCCTTGAGGATGAAGAA------CACGAGAATTTAGTTTAT---CAAAGAAGACACCTCAAGGGCGGTAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATTTAGAGGCTCTGCCTAGTCATGTGCCTACTTACTCGAGAGCTGCTGTTGGACCCCCAAGCTCGTCTGCCAGACGACATTTCTGCAGTGTTTGTGGTTATTTCGCAAACTATACTTGCACCATTTGTGGGGCACGTTTCTGCTGCATTCGGTGTCAAAAAGTTCATAGTGATACACGGTGTCAAAAGTTTGTGGCGTAG Lindsaea_linearis_NOKI ATGGACGACGAT------CCTTTCCTG------TCG------------------------------------AGGAGGCCCTCCACT---------CGAGCTCGTAAAGTGGCTCCTAAAATGGAGGCCGCTCTTGCAGATGTTAACAACCGTTCCCAGGCAGCACTAGCTCGTCTTGACGCTCTAGAGAGTGATAATGTTGCCATGGAGCTG---GTAGACGTTGAT------GATGATGAAGAAGCTTCTGTGGAAGATGAAGAA------CATGAGAATCTTGTTTAT---CAACGGAGGCACTCAAAGGGGGGTAAAAGGGAGACTAGGCAAGCGAGGGCTTTGGAGAAGCTTGCA---ACTGCCAAAAAGGCT------------------CGTAGTTTT---CTCGATCTTCTGCATGAGGCCAACCTGGAAGGTCTGCCCGGTCACGTGCCGACATATTCGAGAGCTGCCGTGGGACCACCGAGCTCTACAGCAAGGCGCCACTTCTGCAGTGTTTGTGGCTACTTTGCAAACTACACTTGCAC------------------------------------------------------------------------------- Lindsaea_microphylla_YIXP ATGGACGACGAT------CCTTTCATG------TCG------------------------------------AGGAGGCCCTCCACT---------CGAGCTCGTAAAGTGGCTCCTAAAATGGAGGCCGCTCTTGCAGATGTTAACAATCGTTCCCAGGCAGCACTAGCTCGTCTTGACGCTCTAGAGAGTGATAATGTTGCCATGGAGCTG---GTAGATGTTGAT------GATGAAGAAGAAGCTTCTGTGGAAGATGAAGAA------CATGAGAATCTTGTTTAT---CAACGGAGGCACTCAAAGGGGGGTAAAAGGGAGACTAGGCAAGCGAGGGCTTTGGAGAAGCTTGCA---ACTGCCAAAAAGGCT------------------CGTAGTTTT---CTTGATCTTCTGCATGAGGCCAACCTGGAAGGTCTGCCTGGTCACGTGCCGACATACTCGAGAGCTGCCGTGGGACCACCAAGCTCTACAGCAAGGCGCCACTTCTGCAGTGTTTGTGGCTACTTTGCAAACTACACTTGCACCCTCTGCGGGGCGCGGTTCTGCTGCATCCGTTGCCAAAAGGTTCACACGGATACAAGGTGTCAGAAGTTTGTAGCTTAG Lygodium_japonicum_PBUU ATGGAAGAAGAG------CCCTTCAGT------TCAGGA---------------------------------GGAAGATCCTCCACT---------AGGATCCGCAAAGTTGCTGCAAAGATGGGTGCTGCCCTTTCTGATGCCAACAATCGCTCTCAGGCAGCTCTTGCCCGGCTTGATGCCCTGGAGACAGATAATGCTGTGGCTGAGCTA---ATTGATGTTGATGATGATGATGAAGAAGAAGCATCTCTGGATGATGAGGAC---------------CAAGTGTTCAATCAGAGGAAGCATATTAAGGGTGGCAAACGAGAGACGAGGCAAGCAAGGGCACTTGAGAGGCTTGAA---AGTGCCAAGAAAATC------------------AGGAGTTTT---TTTGATTTGCTGGAGGAGGCAAATTTGGAGTCTTTACCAAGTCATGTGCCTACATATCTAAGAGCTGCTGTTGGTCCTCCAGGCTCTTCGGCTCGTCGACACTTCTGCACTGTGTGTGGGTATTTTGCAAAGTACACTTGTACAGTGTGTGGAGCAAGGTTTTGTTGCATCCGCTGTCAAAAGGTCCATACTGATACACGCTGTCAAAAGTTCATTGCATAG Myriopteris_rufa_GSXD ATGGAGGACGAC------GTCTTTACT------TCG------------------------------------CGGAAACCTTCGACC---------CGAACGCGGAAGGTGGCTCCGAAGATGGAGGCTGCTCTCGTTGATGTTAACAACCGCTCACAGGCAGCTCTTGCACGACTTGATGCTTTGGAGAGTGACAATGTTGCTATGGAGCTG---GTGGATGTTGAT------GAAGATGAAGAAGTATCCCTGGAGGATGAAGAA------CACGAGAATCTTGTTTAT---CAAAGGCGGCATCCAAAAGGTGGTAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACC------------------CGAAGTTTT---CTTGATCTTTTGCATGAGGCTAATCTGGAAGCTTTGCCTAGTTACGTGCCAACATACTTAAGAGCTGCCGTAGGGCCCCCAAGCTCGTCTGCGAGACGACATTTCTGCAGCGTGTGCGGTTACTTTGCAAACTATACTTGTGTTGTTTGTGGGGCTCGATTCTGCTGCATTCGGTGCCAGAAGGTTCACACAGATACAAGATGCCAAAAGTTTGTCGCATAA Nephrolepis_exaltata_NWWI ATGGAAGATGAT------CTTTTTACT------TCC------------------------------------CGGAGACCTTCAACT---------CGAACACGCAAAGTGGCCCCAAAAATGGAGGCTGCTCTCTCTGATGTCAACAATCGTTCACAGGCAGCTCTTGCCCGCCTCGATGCTTTGGAGAGTGACAATGTTGCTGTGGACCTG---GTGGATGGTGAT------GATGATGAAGAGGCATCTCTTGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGGCACCCCAAGGGTGGCAAGAGGGAGACAAGGCAAGCAAGAGCGCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTTGATCTTTTACAGGAGGCCAATTTGGACTCTCTGCCCAGTCATGTACCTACATACTTGAGAGCTGCTGTTGGACCCCCAAGCTCATCAGCCAGACGACACTTCTGCAGTGTTTGTGGCTATTTTGCAAACTACACTTGCACCATATGTGGGGCACGATTCTGCTGCATACGATGCCAAAAAGTTCATACGGATACACGGTGTCAAAAGTTTGTTGCATAG Notholaena_montieliae_YCKE ATGGAGGACGAC------GTCTTTACC------TCG------------------------------------CGGAAACCTTCAACT---------CGGACGAGGAAGGTGGCTCCGAAGATGGAGGCTGCTCTCGCTGATGTGAACAACCGCTCACAGGCAGCTCTTGCACGACTTGATGCTTTGGAGAGTGACAATGTTGCCATGGAGCTG---GTGGACGTTGAT------GACGATGAAGAAGTATCCCTGGAGGATGAAGAA------CATGAGAATCTTGTTTAT---CAAAGGCGGCATCCAAAAGGTGGCAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCG---ACTGCCAAGAAAACA------------------CGAAGTTTT---CTTGATCTTTTGAATGAGGCTAATTTGGAAGGGTTGCCTAGTCATGTGCCTACATACTTAAGAGCTGCTGTAGGACCGCCGAGCTCATCTGCAAGACGACATTTCTGCAGTGTGTGTGGTTACTTTGCGAATTATACGTGTGTTATTTGTGGGGCTCGATTTTGCTGCGTTCGATGCCAGAAGGTTCACACAGATACAAGATGCCAGAAGTTCGTCGCATAG Nuphar_advena_WTKZ ---------------------------------------------------------------------------------TCTGTC---------CGGAACCGCAAGATGGCTTCAAAAATGAGTGCTGCTCTTGCCAGTAGTGATAACCGGATGCAGGCAGCCCTTGCTCGCCTTGAAGCATTGGAGAGTGATTATGCTGGCGTAGAGACA---GTAGAAATCAAT------GATGATGAAGATGCTTCTCTTGATGAAGATGAT---------------CAAGCTTACATGCAAAAAAAACAG---AAGAGTGCAAGGCGTAAAACTAGGCAAGCAAAAGCACTTGAG------------AGTGCAAAGAAGGCACCA---------------AAATCCTTT---TTGGAGTTGTTACATGAGGCAAATCTGGAATCTTTGCCTCCACACGTACCCTCCTACCTGACTGCTGCTGTTGGTCCTCCAAGTTCAACTGCCCGTCGGCATTTTTGTTCCGTCTGTGGATATATCGCAAATTATACATGTGTCCAATGTGGTACACGCTTTTGTTCGCGCCGCTGCCAGGTTGTACACTCTGATACTCGT------------------??? Onoclea_sensibilis_HTFH ------------------------------------------------------------------------------------------------CGAACACGCAAGGTGGCTCCAAAAATGGAGGCGGCCCTCTCTGATGTCAACAATCGCTCACAGGCAGCTGTTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGAGCTG---ATGGATGGTGAC------GATGATGAAGAAGCGTCTCTTGAAGATGAAGAA------CATGAGAATCTCGTTTAT---CAAAGAAGACATGCCAAAGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTGCCTAGTCATGTGCCTACATACTTGAGAGCTGCTGTTGGACCCCCGAGCTCATCTGCCAG----------------------------------------------------------------------------------------------------------------------------??? Ophioglossum_petiolatum_WTJG ---------------------------------CCC------------------------------------CGCCGAGCCTCTTCT---------CGGATTCGCAAAGTCTCTTTCAGAATGGAAACTGCACTCGTCGACACCAACAACCGAGCTCATGCTGCCTTGGCTCGCCTTGACGCTCTAGAAAGTGACAACGCTGGCATTGAGGCT---GTTGAGGTCGAG------GAAGATGAAGAAGCTTCACTTGATGAAGAAGAC---------------CAAGTTTTTAGCCAGAAAAAGCATCCCAAAGGCTCAAAACGGAAGACAAGACAAGCAAGGGCATTGGAGAAACTTGAA---AGTGCTAGGAAAGCTCCA---------------CGAACATTT---ATAGAACTTCTTCAAGAGGCGAATTTGGAAGCATTGCCACCTCATGTTCCAACATACCTAAGAGCTGCTGTTGGAACTCCAAGCCAATCAGCTCGCCGCCATTTTTGCTCAG???????????????????????------------------------??????????GCCGTTGCAAAAAAGTCCATAGCGACACCCGATGCCAAAAATTCGTTGCTTAA Ophioglossum_sp_QHVS ATGGAGGAGGATGGGCCTGCCTTTACATTTACTCCC------------------------------------CGCCGGGCCTCTTCT---------CGGATTCGCAAAGTCTCTTTCAGAATGGAAACTGCACTCGTCGACACCAACAACCGAGCTCATGCTGCCTTGGCTCGCCTTGACGCTCTAGAAAGTGACAACGCTGGCATTGAGGCT---GTTGAGGTCGAG------GAAGATGAAGAAGCTTCACTTGATGAAGAAGAC---------------CAAGTTTTTAGCCAGAAAAAGCATCCCAAAGGCTCAAAACGGAAGACAAGACAAGCAAGGGCATTGGAGAAACTTGAA---AGTGCTAGGAAAGCTCCA---------------CGAACATTT---ATAGAACTTCTTCAAGAGGCGAATTTGGAAGCATTGCCACCTCATGTTCCAACATACCTAAGAGCTGCTGTTGGAACTCCAAGCCAATCAGCTCGCCGCCATTTTTGCTCAGTGTGTGGCTACTTTGCAAGTTACACATGTACATTATGTGGTGCACGGTTTTGCTCCTGCCGTTGCAAAAAAGTCCATAGCGACACCCGATGCCAAAAATTCGTTGCTTAA Osmunda_javanica_VIBO ATGGAGGATGATGCCCCTTCAATCACT------CCA------------------------------------CGGAGGGCCTCAACT---------CGCACTCGCAAGGTTGCAACCAAGATGGGAGCTGCCCTTTCCGATGTCAATAATCGCTCTCAGGCAGCTCTTGCCCGCCTTGATGCTTTAGAGAATGATAACAATGGCATTGAGCTG---ATCGATGCTGAT------GATGATGATGAAGCCTCCCTCGACGATGAAGAC---------------CAAGTGTTTAACCAAAGAAAGCAGCCAAAGGGCGCCAAACGAAAGACAAGGCAGGCAAAAGCATTGGAAAAACTTGAA---AGTGCCAAAAAGACACCA---------------AGGAGTTTC---CTTGATCTACTTCAGGAGGCAAATTTGGAAGCATTGCAAGACCATGTGCCTACATACCTGAGAGCTGCTGTTGGTCCCCCAAGCTCATCTGCTCGTCGCCATTTCTGTACTGTTTGTGGGTATTTTGCAAATTATACTTGTACTCAGTGTAGAGCACGATTCTGTTGTTGCCGTTGCCAGAAGATTCATAGTGACACACGGTGCCAAAAATTTGTTGCTTAG Osmunda_sp_UOMY ATGGAGGATGATGCCCCTTCAATCACG------CCA------------------------------------CGGAGGGCCTCAGCT---------CGCACTCGCAAGGTTGCAACCAAGATGGGAGCTGCCCTTTCCGATGTCAACAATCGCTCTCAGGCAGCTCTTGCCCGCCTTGATGCTTTAGAGAATGATAACATTGGCATTGAGCTG---ATCGATGCTGAT------GATGATGATGAAGCCTCCCTCGACGATGAAGAC---------------CAAGTGTTTAACCAAAGAAAGCAACCAAAGGGCGCCAAACGAAAGACAAGGCAGGCAAAAGCATTGGAAAAACTTGAA---AGTGCAAAAAAGACACCA---------------AGGAGTTTC---CTTGATCTACTTCAGGAGGCAAATTTGGAAGCATTGCAAGACCACGTGCCTACATACCTGAGAGCTGCTGTTGGTCCCCCAAGCTCATCTGCTCGTCGCCATTTCTGCACTGTTTGTGGGTATTTTGCAAATTATACTTGTACTCAGTGTGGAGCACGATTCTGTTGTTGCCGTTGCCAGAAGATTCATAGTGACACACGGTGCCAAAAGTTTGTTGCTTAG Parahemionitis_cordata_ZXJO ATGGAGGAGGAT------GTCTTTACT------TTA------------------------------------CGGAAACCTTCTACC---------CGGACGCGAAAGGTGGCTCCGAAGATGGAGGCTGCTCTCGCTGATGTAAACAACCGCTCACAGGCAGCTCTTGCACGACTTGATGCTTTGGAGAGTGACAATGTTGGTATCGAGCTG---GTGGATGTTGAT------GATGATGAAGAAGTATCCCTGGAGGATGAAGAA------CATGAGAATCTTGTTTAT---CAAAGGCGGCATCCAAAAGGTGGAAAGAGGGAGACAAGGCAAGCAAGGGCCCTGGAAAAGCTTGCA---ACTGCCAAGAAAACC------------------CGGAGTTTT---CTTGATCTTTTGCATGAGGCTAATTTGGAAGCGTTGCCAAGTCATGTGCCGACATACTTGAGAGCTGCGGTAGGGCCCCCAAGCTCATCTGCAAGACGACATTTCTGCAGTGTGTGCGGTTACTTTGCAAACTATACGTGTGTGATTTGTGGGGCTCGATTCTGCTGCATTCGGTGCCAGAAGGTTCACACTGATACACGATGCCAGAAGTTCGTTGCATAG Peperomia_fraseri_XSZI ATGGAGGATGAA------TCAACCCCG------GCT------------------------------------CGCCGGATGTCAAGC---------CGGACTCGCAAAGTTGCTTCCAAGATGGCCGCTGCTCTTGCAAGCACTGATAACCGGACTCAAGCAGCTCTGGCCCGTCTTGAGGCTTTGGAGAGTGACAATGCTGGTGTAGAAACA---GTGGAAGTTAAT------GACGATGAAGATGCATCTCTTGACGAAGAAGAC---------------GAAGAATATTTGCAGAGAAGGCTGGCCAAAAACACAAAGCGTAAGACCAGGCTTGGAAAAGCGCTTGAG------------AATGCAAAGAAAGCACCC---------------AGAACATTC---ATCGAAATTTTGCAAGAGGCCAACCTCGATGCCTTGCCTGCCCATGTCCCATCTTATCTGAGAGCCGCAGTTGGTCCACCAAGCTCAACATCACGGCGCCATTTCTGCGCAGTCTGCGGATACTTGGCCAACTACACTTGCGTTACATGTGGAGCTCGTTTCTGTTCTTGCCGCTGCAAGGTGATCCACGATGACACTAGATGCTTGAAATTCGTTGCCTGA Phlebodium_pseudoaureum_ZQYU ATGGAAGATGAT------CTTTTTACT------TCG------------------------------------CGGAGGCCTTCAACT---------CGGACGCGAAAGGTGGCTCCAAAAATGGAGGCCGCTCTCTCCGATGTCAACAATCGCTCGCAGGCAGCCCTCGCCCGGCTTGATGCTTTGGAGAGCGACAATGTTGCAATGGACGTG---GTGGATGTTGAT------GATGATGAAGAAGCATCTCTCGAGGATGAAGAA------CACGAGAATCTTGTTTAT---CAAAGGAGACACCCCAAGGGCGGCAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACCGCGAAGAAAACC------------------CGGAGTTTT---CTTGATCTTTTACACGAGGCCAATCTGAAGGCTCTGCCGAGTCATGTCCCTACATACTTGCGAGCTGCTGTTGGGCCCCCGAGCTCATCTGCCAGGCGGCACTTCTGTAGTGTTTGTGGCTATTTTGCAAACTATACTTGCACTGTATGCGGGGCACGATTCTGCTGCATCCGATGTCAAAAAGTTCATACCGACACACGGTGTCAAAAATTTGTGGCATAG Phymatosorus_grossus_ORJE ATGGAAGACGAT------CTTTTTACT------TCG------------------------------------CGGAGGCCTTCAACT---------CGGACGCGAAAGGTGGCTCCAAAAATGGAGGCCGCTCTCTCTGATGTCAACAATCGCTCACAGGCAGCGCTTGCCCGGCTTGATGCTTTGGAAAGCGACAATGTTGCGATGGACTTG---GTGGATGTCGAT------GATGATGAAGAAGCATCTCTGGAGGATGAGGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACCCTAAGGGCGGCAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACCGCGAAGAAAACC------------------CGGAGTTTT---CTTGATCTTTTACACGAGGCCAATCTGGAGGCTCTGCCCAGTCATGTGCCTACATACTTGCGAGCTGCTGTTGGACCCCCGAGCTCATCTGCCAGGCGGCACTTCTGTAGTGTTTGTGGCTATTTTGCAAACTATACTTGCACTGTATGCGGGGCACGATTCTGCTGCATCCGATGCCAAAAAGTTCATACTGACACACGGTGTCAAAAATTTGTGGCATAG Pilularia_globulifera_KIIX ATGGAAGACGAC------CACTTCAAT------TCA------------------------------------CGAAGGCCTTCCACA---------CGAACAAGGAAAGTAGCTGCCAAGATGGGAGCCGCGCTCTCTGACGTCAACAACCGATCCCAGGCTGCTCTTGCACGTCTTGATGCCCTAGAGAGTGACAATGTCGCTATGGAGCTT---GTGGAAGCTGAT------GATGATGAAGAGGCGTCTCTTGAAGATGAAGAACATGCACATGAAAATCTAGTGTAC---TACAGAAGGCACTCAAAGGGTGCTAAGAGGGAGACAAGGCAAGCCAGAGCTCTGGAGAAGCTTGCT---ACTGCCAAGAAGACC------------------CGGAGTTTC---CATGATCTACTACAGGAGGCCAACTTAGAGGCTTTGCCAAGTCACGTGCCGACATACTTGAGAGCTGCAGTAGGTCCACCGAGTTCATCCTCACGGCGTCACTTCTGCAGTGTGTGTGGATACTTCGCAAATTATACTTGCGTTGTTTGTGGGGCACGTTTCTGTTGTATTCGGTGCCAGAAAGTGCATACGGATACCCGGTGTCAAAAATTTGTTGCATAG Pityrogramma_trifoliata_UJTT ATGGAGGACGAT------ATATTTACT------CCC------------------------------------CGAAGACCCTCGACT---------CGAACGCGAAAGGTGGCTCCGAAAATGGAGGCTGCTCTCGTTGATGTCAACAACCGTACACAGGCAACCATTGCCCGCCTTGATGCTTTAGAAAGTGACAATGTTGCTATAGAGCTG---ATTGATGCGGAT------GATGATGAAGATGTGTCTCTAGAGGATGAAGAA------CATGAGAATCTTGTCTAT---CAAAGACGGCATCCAAAAGGTGGTAAGAGGGAGACGAGGCAAGCGAGGGCTCTTGAAAAGCTTGCA---ACTGCAAAGAAAACC---CGGAGTTTTTTCGA?CGGAGTTTT---TTCGATCTTTTGCATGAGGCAAATTTGGAGTCTCTACCTAGTCATGTCCCTACATACTTGAGAGCTGCAGTTGGTCCCCCT------------------------------------------------------------------------------------------------------------------------------------------??? Plagiogyria_japonica_UWOD ---------GAT------CTCTTCACT------TCG------------------------------------CGGAGACCTTCAACT---------CGAACTCGCAAGGTAGCCCCTAAGATGGGGGCTGCTCTCTCCGACGCCAACAACCGCTCCCAGGCAGCTCTCGCCCGGCTTGATGCTTTAGAGAGTGACAATGTTGCTGTTGAGCTG---GTGGATGGTGAT------GATGAGGAAGAAGCATCTCTTGACGACGAAGAA------CACGAGAATCTAGTGTAT---CATAGGAGGCACACAAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCACTGGAGAAGCTTGCG---AGTGCCAAGAAGACC------------------CGTAGTTTT---CTCGATCTTTTGCAGGAGGCTAATTTGGAAGCTGTGCCGAGTCATGTGCCCACATACTTGAGAGCTGCTGTTGGGCCCCCAAGCTCGGCTGCACGGCGCCACTTTTGCAGTGTCTGTGGGTACTTTGCAAATTATACTTGTACTGCTTGTGGGGCTCGGTTCTGCTGCAGTCGATGCCAGAAAGTTCATGCGGATACTCGGTGTCAAAAGTTCGTTGCATAG Pleopeltis_polypodioides_UJWU ATGGAAGACGAT------ATTTTTATT------TCG------------------------------------CGGAGGCCTTCAACT---------CGGACACGAAAGGTGGCTCCAAAAATGGAGGCCGCTCTCTCCGATGTCAACAGTCGCTCACAGGCAGCACTTGCCCGGCTTGATGCTTTGGAGAGCGACAATGTTGCAATAGACTTG---GTGGATGTCGAT------GATGACGACGAAGCATCTCTCGAGGATGAAGAA------CACGAGAATCTAGTTTAT---CAAAGAAGACACCCTAAGGGCGGCAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACCGCGAAGAAAACT------------------CGAAGTTTT---CTTGATCTTCTACACGAGGCCAATCTGAAGGCTCTGCCCAGTCATGTCCCTACATACTTGCGAGCTGCTGTCGGACCCCCCAGCTCATCTGCCAGGCGGCACTTCTGCAGCGTGTGTGGCTATTTTGCAAACTATACTTGCACGCTATGCGGGGCACGATTCTGCTGCGTCCGATGTCAAAAAATTCATACCGACACACGGTGTCAGAAATTTGTGGCATAG Polypodium_amorphum_YLJA ------------------------------------------------------------------------???????????AACT---------CGGACACGAAAGGTGGCTCCAAAAATGGAGGCCACTCTCTCCGATGTCAACAATCGCTCACAGGCAGCACTCGCCCGGCTTGATGCTTTGGAGAGCGACAATGTTGCGATGGACTTG---GTGGATGTCGAT------GATGATGAAGAAGCATCTCTCGAGGATGAAGAA------CACGAGAATGTAGTTTAT---CAAAGAAGACACCCTAAGGGCGGCAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCGAAGAAAACC------------------CGGAGTTTT---CTTGATCTTTTACACGAGGCCAATCTGAAGGCTCTGCCCAGTCATGTCCCTACATACTTGCGAGCTGCTGTCGGACCCCCGAGCTCATCTGCCAGGCGGCACTTCTGTAGTGTTTGTGGCTATTTTGCAAACTATACTTGCACTCTATGCGGGGCACGATTCTGCTGCGTCCGATGTCAAAAAGTTCATACCGACACACGGTGTCAAAAATTTGTGGCGTAG Polypodium_glycyrrhiza_CJNT ATGGAAGACGAT------CTTTTTACT------TCG------------------------------------CGGAGGCCTTCAACT---------CGGACACGAAAGGTGGCTCCAAAAATGGAGGCCACTCTCTCCGATGTCAACAATCGCTCACAGGCAGCGCTGGCCCGGCTTGATGCTTTGGAGAGCGACAATGTTGCAATGGACTTG---GTGGATATCGAT------GATGATGAAGAAGCATCTCTCGAGGATGAAGAA------CACGAGAATGTAGTTTAT---CAAAGAAGACACCCTAAGGGCGGCAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACCGCGAAGAAAACC------------------CGGAGTTTT---CTTGATCTTTTACACGAGGCCAATCTGAAGGCTCTGCCCAGTCATGTCCCTACATACTTGCGAGCTGCTGTCGGACCCCCAAGTTCATCTGCCAGGCGGCACTTCTGTAGTGTTTGTGGCTATTTTGCAAACTATACTTGCACTCTATGCGGGGCACGATTCTGCTGCGTCCGATGTCAAAAAGTTCATACTGACACACGGTGTCAAAAATTTGTGGCG??? Polypodium_hesperium_B_IXLH ATGGAAGACGAT------CTTTTTACT------TCG------------------------------------CGGAGGCCTTCAACT---------CGGACACGAAAGGTGGCTCCAAAAATGGAGGCCACTCTCTCCGATGTCAACAATCGCTCACAGGCAGCGCTCGCCCGGCTTGATGCTTTGGAGAGCGACAATGTTGCGATGGACTTG---GTGGATGTCGAT------GATGATGAAGAAGCATCTCTCGAGGATGAAGAA------CACGAGAATGTAGTTTAT---CAAAGAAGACACCCTAAGGGCGGCAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACCGCGAAGAAAACC------------------CGGAGTTTT---CTTGATCTTTTACACGAGGCCAATCTGAAGGCTCTGCCCAGTCATGTCCCTACATACTTGCGAGCTGCTGTCGGACCCCCGAGTTCATCTGCCAG?????????CTGTAGTGTTTGTGGCTATTTTGCAAACTATACTTGCACTCTATGCGGGGCACGATTCTGCTGTGTCCGATGTCAAAAGGTTCATACCGACACACGGTGTCAAAAATTTGTGGCGTAG Polypodium_hesperium_GYFU ------------------------------------------------------------------------CGGAGGCCTTCAACT---------CGGACACGAAAGGTGGCTCCAAAAATGGAGGCCACTCTCTCCGATGTCAACAATCGCTCACAGGCAGCGCTCGCCCGGCTTGATGCTTTGGAGAGCGACAATGTTGCGATGGACTTG---GTGGATGTCGAT------GATGATGAAGAAGCATCTCTCGAGGATGAAGAA------CACGAGAATGTAGTTTAT---CAAAGAAGACACCCTAAGGGCGGCAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACCGCGAAGAAAACC------------------CGGAGTTTT---CTTGATCTTTTACACGAGGCCAATCTGAAGGCTCTGCCCAGTCATGTCCCTACATACTTGCGAGCTGCTGTCGGACCCCCAAGTTCATCTGCCAGGCGGCACTTCTGTAGTGTTTGTGGCTATTTTGCAAACTATACTTGCACTCTATGCGGGGCACGATTCTGCTGTGTCCGATGTCAAAAGGTTCATACCGACACACGGTGTCAAAAATTTGTGGCGTAG Polystichum_acrostichoides_FQGQ ATGGAAGATGGT------CTTTTTACT------CCG------------------------------------CGGAGACCTTCACTT---------CGAACACGCAAGGTAGCTCCAAAAATGGAGGCCGCTCTCTCGGATGTCAACAATCGATCACAGGCAGCTCTTGCCCGCCTTGATGCTTTGGAGAGCGACAATGTTGCTATGGACCTG---GT??????????------??????????????????????????????GAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACCCCAAGGGTGGTAAGAGGGAGACGAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTTGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTGCCTAGTCATGTGCCTACATACTTGAGAGCTGCAGTTGGACCCCCAAGCTCATCTGCCAGACGACACTTCTGCAGTGTTTGTGGTTATTTCGCAAATTATACTTGCACAATATGTGGGGC----------------------------------------------------------------??? Psilotum_nudum_QVMR ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATGATGATGAGGCTTCACTTGATGAAGAAGAT---------------CAAGTGTTCAGTCAGAAAAAGCAACCCAAGGGGTCCAAGCGCAAAACAAGACAAGCAAAAGCCCTGGAGAAACTTGAA---AGTGCAAGAAAATTACCA---------------AGGAGTTTC---TTA????????????????????TTTGGAAGCATTGCCCTACCATGTTCCCACATATTTGAGAGCTGTTGTTGGACCTCCAAACTTAGCTGCTCGGCGCCATTTCTGCTCAGTCTGTGGATACTTTGCAAATTACACTTGTACATT---------------------------------------------------------------------------- Pteridium_aquilinum_Contig20647 ATGGAAGATGAC------ATATTTACT------TCA------------------------------------CGGAGRCCTTCAACT---------CRAACGCGCAAGGTGGCTCCAAAAATGGAGGCAGCTCTCTCTGATGTCAACAACCGCTCACAGGCAGCTCTTGCCCGCCTTGATGCTTTGGAAAGTGACAATGTTGCTATGGAGCTG---GTGGATGCTGAT------GATGATGAAGAAGCGTCTCTCGAGGATGAAGAG------CATGAGAATCTAGTTTAT---CAAAGACGGCACAGTAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTAGAAAAGCTTGCG---AGTGCCAAGAAGACG------------------CGGAGTTTC---CTCGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTGCCTAGTTATGTTCCTACATACTTGAGAGCTGCTGTTGGTCCCCCAAGCTCATCTGCTAGACGCCACTTCTGCAGTGTTTGTGGTTACTTTGCAAATTATACTTGTACTGTTTGTGGCGCACGATTCTGCTGCATTCGATGCCAAAAAGTCCATGTTGATACACGGTGTCAGAAGTTTGTTGCA??? Pteris_ensiformis_FLTD ATGGAGGATGAC------ATCTTTACT------TCT------------------------------------CGGAAGCCGTCGACT---------CGAACGCGGAAGGTGGCTCCGAAAATGGAGGCTGCTCTCGCTGATGTCAACAACCGCACGCAGGCAGCTGTTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCCGTAGAGCTG---ATTGATGTTGAT------GATGATGAAGATGCATCCCTGGAGGACGAAGAA------CATGAGAATCTTGTTTAT---CAAAGAAGGCATCCAAAAGGTGGTAAGAGGGAGACGAGGCAAGCGAGGGCTCTTGAAAAGCTTGCA---ACGGCAAAGAAAACC------------------CGAAGTTTT---CTTGATCTTTTGCATGAGGCGAATCTGGAGTCTCTGCCTAGTCATGTCCCTACCTACTTCAGAGCTGCAGTCGGCCCCCCAAGCACATCTGCCAGACGATATTTCTGTAGTGTCTGTGGTTACTTTGCAAATTATACTTGCACGGTCTGTGGGGCTCGATTCTGCTGCATTCGGTGCCAGAAGGTTCATACTGATACAAGATGTCAAAAATTTGTCGCA??? Pteris_vittata_POPJ ---------GAC------ATCTTTACC------TCT------------------------------------CGGAAACCGTCGACT---------CGGACGCGGAAGGTGGCTCCGAAGATGGAGGCTGCTCTCGCTGATGTTAACAGCCGCACGCAGGCAGCTCTTGCCCGTCTTGATGCATTGGAGAGTGACAACGTCGCCATAGAGCTG---ATTGATGCTGAT------GATGATGAAGACGTGTCCCTAGAGGATGAAGAA------CATGAGAATCTCGTTTAT---CAAAGAAGGCATCCAAAAGGTGGTAAAAGAGAGACAAGGCAAGCAAGGGCTCTTGAAAAGCTTGCA---ACTGCAAAGAAAACC------------------CGAAGTTTT---CTTGATCTTTTGCACGAGGCAAATCTGGAGTCTTTGCCTAGTCATGTCCCCACATACTTAAGAGCTGCAGTCGGTCCCCCTAGCGCATCTGCCAGACGATACTTCTGCAGTGTCTGTGGTTACTTTGCAAACTATACGTGTACTGTTTGTGGGGCTCGTTTCTGCTGCATTCGGTGCCAGAAGGTTCATATTGATACGAGATGTCAAAAATTTGTTGCATAG Sceptridium_dissectum_EEAQ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAATGTTGGTGTTGATGTC---GTTGATGTTGAT------GATGATGAAGATGCGTCACTGGATGAAGATGAC---------------CAAGTCTTTAGTCAGAAAAGGCAACCCAAAGGTTCAAAACGTAAGACAAGGCAAGCAAAAGCATTGGAGAAACTTGAA---AGTGCTCGAAAAGCACCA---------------AGGAATTTC---ATCGAACTTCTTCAGGAGGCAAATTTGGAAGGATTGCCACCTCATGTTCCCACATACCTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------??? Sticherus_lobatus_XDVM ------------CGCCCTTCCTTCGCT------TCG------------------------------------CGCAGATCCTCCACA---------CGCACCCGCAAAGTCGCTCCCAAAATGGGCGCTGCCCTTTCCGATGTCCACAATCGCTCCCAGGCAGCTCTTGCCCGTCTTGATGCTTTAGAGACTGATAATATAGTTGTTGAGCTG---ATTGATGCTGAT------GATGATGATGAAGCATCCCTTGATGATGAAGAC------------------?TGTTCAGTCAGAGGAAGCAGCCAAAGGGCGCTAAGAGAAAGACAAGGCAAGCAAGGGCTCTGGAGAAACTTGAG---ACTGCCAAAAAGGCC------------------AGGAGTTTC---CTTGATCTACTTCAGGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Thelypteris_acuminata_MROH ATGGAAGATGAT------CTTTTTACT------CTG------------------------------------CGGAGACCTTCAACT---------CGAACACGCAAGGTGGCTCCAAAAATGGAGGCTGCTCTCTCTGATGTCAACAATCGATCACAGGCAGCTATTGCCCGCCTTGATGCGTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGATGTTGAC------GATGATGAAGAAGCATCTCTTGAGGATGAAGAG------CATGAGAATCTCGTTTAT---CAAAGAAGGCATGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACCGCCAAGAAAACT------------------AGGAGTTTT---CTTGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTGCCTAGTCATGTGCCTACATACTTGAGAGCTGCTGTTGGACCCCCGAGTTCATCTGCTAGACGACACTTCTGCAGTGTTTGTGGTTATTTCTCAAATTATACTTGCACTATATGTGGGGCACGATTCTGCTGCATTCGATGTCAAAAAGTCCATACTGATACACGGTGTCAAAAGTTTGTGGCA??? Thyrsopteris_elegans_EWXK ATGGAAGACGAT------CTCTTTACT------TCG------------------------------------CGGAGACCTTCAACT---------CGAACTCGCAAGGTAGCCCCCAAGATGGGGGCTGCTCTCTCCGACGTCAACAACCGCTCCCAGGCAGCTCTCGCCCGGCTTGAGGCTTTAGAGATCGACAATGTTGCTGTGGAGCTG---GTGGATGGTGAT------GATGATGAAGAAGCATCTCTTGACGATGAAGAA------CACGACAATCTAGTGTAT---CATAGGAGGCACACAAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCACTGGAGAAGCTTGCG---AGTGCCAAGAAGACC------------------CGGAGTTTT---CTTGATCTTTTGCAGGAGGCCAATTTGGAAGCTCTGCCGAGTCATGTGCCCACATACTTGAGAGCTGCGGTTGGGCCCCCGAGCTCGTCTGCACGGCGCCACTTTTGCAGTGTATGTGGGTACTTCGCAAATTATACTTGTGCGACTTGTGGAGCACGGTTCTGCTGCAGTCGATGTCAGAAAGTTCATGCCGATACACGCTGTCAAAAGTTTGTCGCA??? Tmesipteris_parva_ALVQ ATGGAGGATGAT------GCAACTGCA------------------------------------GTTACTCAACATCGGACCTCAACT---------CGAGTACGCAGGTTGGCTTCCAAGATGGAAGTTGCACTTACAGACACAAACAATAGAGCTCAGGCTGCTCTTGCTCGCCTTGATGCTTTGGAAAGTGACAATGTTGGCATTGAGACA---ATTGATGGCGAT------GATGATGATGAGGTTTCACTTGATGAAGAAGAT---------------CAAGTGTTCAGTCAGAAAAAGCAACCCAAGGGTTCAAAGCGTAAAACAAGACAAGCAAAAGCCCTGGAGAAACTTGAA---AGTGCAAGAAAAGTGCCA---------------AGGAATTTC---TTTGAAGTACTTCAGGAGGCAAATTTAGAAGCATTGCCATACCATGTTCCTACATATTTGAGAGCTGCTGTTGGACCTCCAAACTTAGCTGCTCGACGCCATTTCTGCTCAGTCTGTGGGTTCTTTGCAAATTACACCTGTACATTATGTGGAGCAAGGTTCTGCTCTTGTCGCTGCCAAAAGGTCCACAGCGACACCCGGTGCCAAAAATTTGTTGCT??? Vittaria_lineata_SKYV ATGGAGGACGAC------AGCGTTATC------TCG------------------------------------CGGAAGCCCTCAACC---------CGAATGCGGAAAGTGGCTCCGAAGATGGGAGCTGCATTGGGCGATGCCAACAACCGAGAACAGGCAGTTCTCGCACGACTTGATGCTTTGGAAAGTGATAGTATTGCCCTGGAGCTG---GTAGATGGTGAT------GAAGATGAGGAAGTATCCCTGGACGATGAGGAG------CATGAGAATCTTGTTTAT---CAAAGGCGCCATCCAAAAGGTGGTAAGAGGGAGACCAGACAGGCCAGGGCTCTGGAAAAACTTGCA---ACTGCCAAAAAAGCC------------------CGAAGTTTT---CAAGACCTTTTGTATGAGGCCAACTTGGAGGCTTTACCTAGTCATGTCCCTACATACTTGAGAGCTGCTGTTGGCCCCCCTAGCTCATCTGCTCGGCGGCATTTCTGCAGTGTCTGTGGTTACTTTGCAAATTACACATGTACAGTTTGTGGTGCACGATTCTGCTGCATACGGTGTCAAAAGATTCATACAGATACTCGATGTCAAAAGTTCGTTGCTTAG Woodsia_ilvensis_YQEC ---------------------------------------------------------------------------------TCAACT---------CGAACACGCAAGGTGGCTCCGAAAATGGAGGCAGCTCTTTCTGATGTCAACAATCGGTCACAGGCAGCTATTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGATGTTGAC------GATGATGAAGATGCGTCTCTGGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCAAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTT---CTCGATCTTTTGCAGGAGGCCAATTTGGAGGCTCTGCCTAGTCATGTGCCTACTTACTTGAGAGCTGCTGTTGGACCCCCGAGCTCATCTGCGAGACGGCACTTCTGCAGTGTTTGTGGTTATTTTGCAAATTATACTTGCACCATATGTGGG------------------------------------------------------------------??? Woodsia_scopulina_YJJY ATGGAAGATGAT------CTTTTTACT------CTG------------------------------------CGGAGACCTTCAACT---------CGAACACGCAAGGTGGCTCCGAAAATGGAGGCGGCTCTTTCTGATGTCAACAATCGCTCACAGGCAGCTATTGCCCGCCTTGATGCTTTGGAGAGTGACAATGTTGCTATGGACCTG---ATGGATGTTGAT------GATGATGAAGATGCGTCTCTCGAGGATGAAGAA------CATGAGAATCTAGTTTAT---CAAAGAAGACACGCCAAGGGTGGTAAGAGGGAGACAAGGCAAGCGAGGGCTCTGGAAAAGCTTGCA---ACTGCCAAGAAAACT------------------CGGAGTTTC---CTGGATCTTTTGCAGGAGGCCAATCTGGAGGCTCTGCCTAGTCATGTGCCCACATACTTAAGAGCTGCTGTTGGACCCCCGAGCTCATCTGCCAGACGGCATTTCTGCAGTGTTTGTGGTTATTTCGCAAATTATACTTGCACCATATGTGGGGCACGATTCTGCTGCATTCGATGTCAAAAAGTCCACACTGATACACGGTGTCAAAAGTTTGTGGCATAG Zea_mays_GRMZM2G089876_T02 ATGGATGGGGATGAGGAGAAC------------GTCGGGCCGTTC---------------------------CGCCGGACTAGCGCG---------CGCACGCGCCGCATGGCCACGCGCATGGCGTCCGCGCTCGCCAGCTCGGACAATCGCGCCCAGGCTGCATTAGCTCGCCTTGAAGCTCTTGAGAGCGATAATGGTGGGGTCGAGGTG---GTAGATCTTAAT------GATGATGAGTACGGATCCACGGATGAAGAAGAC---------------CCTGTTCTCATGCAAAAAAAACAGTCCAAGATCATGAAACGTAAAACAAGGCAAGGGAAAGCTTTGGAG------------------AAGAGGGCAGCA---------------AGATCACTC---ATGGATGTGCTACAAGAAGCAAATTTGGAGTCCGTTCCTCCTCATGTGCCAACATATTCAAGGGCTGCTGTGGGTCCACCGAGCACTTCATCTCGACGCCACTACTGCTCAGTTTGCGGTAGCTCTGCAACCTACACATGCGTGAGGTGTGGGACGCGGTTCTGTTCATGCCGCTGTCAAGTCATACACAATGATACACGCTGCCTGAAGTTTGTGGCTTGA ; END; BEGIN TREES; Title SEF_v1.2_wtree.nex; LINK Taxa = Taxa; TRANSLATE 1 Adiantum_aleuticum_WCLG, 2 Adiantum_raddianum_BMJR, 3 Alsophila_spinulosa_GANB, 4 Anemia_tomentosa_CQPW, 5 Angiopteris_evecta_NHCM, 6 Aquilegia_coerula_00211.1, 7 Arabidopsis_thaliana_At_SEF, 8 Argyrochosma_nivea_XDDT, 9 Asplenium_nidus_PSKY, 10 Asplenium_platyneuron_KJZG, 11 Athyrium_filixfemina_URCP, 12 Athyrium_sp_AFPO, 13 Azolla_caroliniana_cf_CVEG, 14 Blechnum_spicant_VITX, 15 Bolbitis_repanda_JBLI, 16 Botrypus_virginianus_BEGM, 17 Cedrus_libani_GGEA, 18 Crepidomanes_venosum_TWFZ, 19 Cryptogramma_acrostichoides_WQML, 20 Cryptomeria_japonica_DSXO, 21 Culcita_macrocarpa_PNZO, 22 Cystopteris_fragilis_LHLE, 23 Cystopteris_protrusa_YOWV, 24 Cystopteris_reevesiana_RICC, 25 Cystopteris_sp_XXHP, 26 Cystopteris_utahensis_HNDZ, 27 Davallia_fejeensis_OQWW, 28 Dennstaedtia_davallioides_MTGC, 29 Deparia_lobatocrenata_FCHS, 30 Diplazium_wichurae_UFJN, 31 Dipteris_conjugata_MEKP, 32 Encephalartos_barteri_GNQG, 33 Equisetum_hyemale_JVSZ, 34 Gaga_arizonica_DCDT, 35 Gymnocarpium_dryopteris_HEGQ, 36 Homalosorus_pycnocarpos_OCZL, 37 Hymenophyllum_bivalve_QIAD, 38 Illicium_parviflorum_ROAP, 39 Leucostegia_immersa_WGTU, 40 Lindsaea_linearis_NOKI, 41 Lindsaea_microphylla_YIXP, 42 Lygodium_japonicum_PBUU, 43 Myriopteris_rufa_GSXD, 44 Nephrolepis_exaltata_NWWI, 45 Notholaena_montieliae_YCKE, 46 Nuphar_advena_WTKZ, 47 Onoclea_sensibilis_HTFH, 48 Ophioglossum_petiolatum_WTJG, 49 Ophioglossum_sp_QHVS, 50 Osmunda_javanica_VIBO, 51 Osmunda_sp_UOMY, 52 Parahemionitis_cordata_ZXJO, 53 Peperomia_fraseri_XSZI, 54 Phlebodium_pseudoaureum_ZQYU, 55 Phymatosorus_grossus_ORJE, 56 Pilularia_globulifera_KIIX, 57 Pityrogramma_trifoliata_UJTT, 58 Plagiogyria_japonica_UWOD, 59 Pleopeltis_polypodioides_UJWU, 60 Polypodium_amorphum_YLJA, 61 Polypodium_glycyrrhiza_CJNT, 62 Polypodium_hesperium_B_IXLH, 63 Polypodium_hesperium_GYFU, 64 Polystichum_acrostichoides_FQGQ, 65 Psilotum_nudum_QVMR, 66 Pteridium_aquilinum_Contig20647, 67 Pteris_ensiformis_FLTD, 68 Pteris_vittata_POPJ, 69 Sceptridium_dissectum_EEAQ, 70 Sticherus_lobatus_XDVM, 71 Thelypteris_acuminata_MROH, 72 Thyrsopteris_elegans_EWXK, 73 Tmesipteris_parva_ALVQ, 74 Vittaria_lineata_SKYV, 75 Woodsia_ilvensis_YQEC, 76 Woodsia_scopulina_YJJY, 77 Zea_mays_GRMZM2G089876_T02; TREE bestREP2 = ((((64:0.02705643,(((44:0.02824153,28:0.02540872):0.02963642,15:0.04672409):0.00349606,39:0.07343509):1.0E-8):0.00305806,((((((8:0.03598305,43:0.02479812):0.00766062,((34:0.02910987,52:0.02707402):0.02613302,45:0.04406371):0.01439611):0.02544241,((2:0.08438266,1:0.01718642):0.02316992,74:0.17992525):0.0066489):0.02594681,((67:0.04012849,(57:0.08633622,68:0.05826651):0.01132147):0.05526607,19:0.05893129):0.0036379):0.06322057,(66:0.05821337,((41:0.01059756,40:0.00657064):0.23198029,((56:0.11146112,13:0.20209257):0.07986482,(((3:0.05278537,72:0.0263352):0.01026545,(58:0.01906543,21:0.01005634):0.01728002):0.04026591,((42:0.19339106,4:0.18899633):0.05631242,((((51:0.00516411,50:0.01331945):0.07450357,((33:0.36162972,(((65:0.03777238,73:0.03622537):0.09413445,((69:0.03447005,16:0.02430014):0.06156352,(48:0.00225343,49:1.0E-8):0.16185319):0.07025694):0.04568269,((77:0.52926966,(((17:0.11320714,20:0.18994712):0.0405699,32:0.09148323):0.16345595,(46:0.21993727,((6:0.30181691,38:0.07542807):0.0359116,53:0.30813126):0.05322304):0.09021994):0.01606859):0.10540901,7:0.46036111):0.16488613):0.04145681):0.03933604,5:0.21697823):0.04787272):0.05709058,(31:0.18807864,(18:0.08867463,37:0.04129527):0.06603533):0.00130841):0.01740814,70:0.06739135):0.07187994):0.13172265):0.0153961):0.04177838):0.02543148):0.00783466):0.0247427,(27:0.03402712,(((59:0.0333183,((61:0.00988977,(62:1.0E-8,63:0.00197415):0.00395627):0.00308916,60:0.00288656):0.00654396):0.00774351,54:0.02302118):0.01414477,55:0.0085202):0.04979456):0.02559128):0.01077108):0.01536928,(((24:0.01106828,((25:1.0E-8,23:1.0E-8):0.0102013,22:0.0092908):0.00291849):0.00495615,26:0.01008103):0.02510706,35:0.0096142):0.01727155):0.0027025,(((14:0.01514483,47:0.01798667):1.0E-8,29:0.00364097):0.00760168,((75:0.01609571,76:0.0188763):0.00646127,(36:0.01458931,(71:0.0303483,((30:0.0065515,12:0.00992157):0.0020618,11:0.01211072):0.00440599):0.00330312):0.00292155):1.0E-8):0.00392128,(10:0.03995653,9:0.14838961):0.07081346); END; begin sets; charset exclude = 13 - 72 88 - 96 214 - 216 229 - 234 268 - 273 361 - 363 382 - 396 406 - 408 628 - 630; charset codonPos1 = 1 - 628 \ 3; charset codonPos2 = 2 - 629 \ 3; charset codonPos3 = 3 - 630 \ 3; end; begin mrbayes; set autoclose = no nowarn = yes; exclude 13 - 72 88 - 96 214 - 216 229 - 234 268 - 273 361 - 363 382 - 396 406 - 408 628 - 630; charset codonPos1 = 1 - 628 \ 3; charset codonPos2 = 2 - 629 \ 3; charset codonPos3 = 3 - 630 \ 3; partition currentPartition = 3 : codonPos1 , codonPos2 , codonPos3; set partition = currentPartition; lset applyto = ( 1 , 2 , 3 ); lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; mcmc; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTitle SEF_v1.2_wtree.nex; END; BEGIN CODONS; CODESET * UNTitle SEF_v1.2_wtree.nex; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTitle SEF_v1.2_wtree.nex; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; Title SEF_v1.2_wtree.nex; tell ProjectCoordinator; timeSaved 1430011085468; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 9134778055803441077; tell It; setDefaultOrder 60 5 16 8 20 2 3 65 44 31 56 0 9 59 28 4 17 51 62 18 42 32 73 48 68 25 39 35 13 52 33 19 29 10 24 38 46 49 61 36 70 41 22 37 69 64 26 63 45 58 55 76 67 75 40 30 53 57 54 72 6 27 23 15 47 7 14 43 11 66 34 12 1 50 74 71 21; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2492953599080226701; checksumv 0 2 2190961802 null getNumChars 630 numChars 630 getNumTaxa 77 numTaxa 77 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 792009.0 sumSquares 9.223372036854819E18 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 716; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #9134778055803441077 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 5151.1430011044306.835125402906409527; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 649; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((((65:0.03777238,73:0.03622537):0.09413445,((69:0.03447005,16:0.02430014):0.06156352,(48:0.00225343,49:1.0E-8):0.16185319):0.07025694):0.04568269,(33:0.36162972,(5:0.21697823,((51:0.00516411,50:0.01331945):0.07450357,((31:0.18807864,(18:0.08867463,37:0.04129527):0.06603533):0.00130841,(70:0.06739135,((42:0.19339106,4:0.18899633):0.05631242,(((3:0.05278537,72:0.0263352):0.01026545,(58:0.01906543,21:0.01005634):0.01728002):0.04026591,((56:0.11146112,13:0.20209257):0.07986482,((41:0.01059756,40:0.00657064):0.23198029,(66:0.05821337,(((((8:0.03598305,43:0.02479812):0.00766062,((34:0.02910987,52:0.02707402):0.02613302,45:0.04406371):0.01439611):0.02544241,((2:0.08438266,1:0.01718642):0.02316992,74:0.17992525):0.0066489):0.02594681,((67:0.04012849,(57:0.08633622,68:0.05826651):0.01132147):0.05526607,19:0.05893129):0.0036379):0.06322057,((27:0.03402712,(((59:0.0333183,((61:0.00988977,(62:1.0E-8,63:0.00197415):0.00395627):0.00308916,60:0.00288656):0.00654396):0.00774351,54:0.02302118):0.01414477,55:0.0085202):0.04979456):0.02559128,((64:0.02705643,(((44:0.02824153,28:0.02540872):0.02963642,15:0.04672409):0.00349606,39:0.07343509):1.0E-8):0.00305806,((((24:0.01106828,((25:1.0E-8,23:1.0E-8):0.0102013,22:0.0092908):0.00291849):0.00495615,26:0.01008103):0.02510706,35:0.0096142):0.01727155,((((14:0.01514483,47:0.01798667):1.0E-8,29:0.00364097):0.00760168,((75:0.01609571,76:0.0188763):0.00646127,(36:0.01458931,(71:0.0303483,((30:0.0065515,12:0.00992157):0.0020618,11:0.01211072):0.00440599):0.00330312):0.00292155):1.0E-8):0.00392128,(10:0.03995653,9:0.14838961):0.07081346):0.0027025):0.01536928):0.01077108):0.0247427):0.00783466):0.02543148):0.04177838):0.0153961):0.13172265):0.07187994):0.01740814):0.05709058):0.04787272):0.03933604):0.04145681):0.082443065,((77:0.52926966,(((17:0.11320714,20:0.18994712):0.0405699,32:0.09148323):0.16345595,(46:0.21993727,((6:0.30181691,38:0.07542807):0.0359116,53:0.30813126):0.05322304):0.09021994):0.01606859):0.10540901,7:0.46036111):0.082443065);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2492953599080226701 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 649; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; endTell; setTool mesquite.charMatrices.SortTaxa.SortTaxa.taxaSort; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;