#NEXUS [written Tue Sep 15 14:14:15 BRT 2015 by Mesquite version 3.03 (build 702) at Micologia/192.168.0.107] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=13; TAXLABELS Phyllosticta_capitalensis_COAD1959 Phyllosticta_capitalensis_CBS115049 Phyllosticta_capitalensis_CBS123404 Phyllosticta_capitalensis_CBS128856 Phyllosticta_cordylinophila_CPC20261 Guignardia_mangiferae_IMI260576 Phyllosticta_aloeicola_CPC21021 Phyllosticta_aloeicola_CPC21020 Phyllosticta_brazillianiae_LGMF330 Phyllosticta_foliorum_CBS447_68 Phyllosticta_rubra_CBS111635 Phyllosticta_minima_CBS585_84 Guignardia_rhodorae_CBS901_69 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1074; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Phyllosticta_capitalensis_COAD1959 ???????????????????????????????????????????????????????????????????????????????? Phyllosticta_capitalensis_CBS115049 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAATGTAATAACTTCTATTGAAAGGTTCCAGAGTA---GGCGCTAC Phyllosticta_capitalensis_CBS123404 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAATGTAATAACTTCTATTGAAAGGTTCCAGAGTA---GGCGCTAC Phyllosticta_capitalensis_CBS128856 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAATGTAATAACTTCTATTGAAAGGTTCCAGAGTA---GGCGCTAC Phyllosticta_cordylinophila_CPC20261 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAATGTAATAACTTCT-CTGAAAGGTCTTCGATTA---GGCGC--- Guignardia_mangiferae_IMI260576 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAA--TAGTAATTTT--TTGAAAGGTCTTCGAGTA-----GGCTGC Phyllosticta_aloeicola_CPC21021 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAATAC-GTAATTCTTCTTGAAAGG--ATCGAGTACGTCGGACCTC Phyllosticta_aloeicola_CPC21020 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAATAC-GTAATTCTTCTTGAAAGG--ATCGAGTACGTCGGACCTC Phyllosticta_brazillianiae_LGMF330 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAT--TAGTAATTCT--ACCAAAGGACCTCTAGTACCGGGGCCCCC Phyllosticta_foliorum_CBS447_68 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAC--TAGTAATTCT--CTGAAAGGTCGCCG--TAGGGGGCCCCCC Phyllosticta_rubra_CBS111635 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAC--TAGTAATTCT--CTGAAAGGTCGCCG-GTACCCGGCCCCCC Phyllosticta_minima_CBS585_84 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAC--TAGTAATTC---ATGAAAGGTCGCCG-GTACCTGGCCCCCC Guignardia_rhodorae_CBS901_69 TTCCGTAGGTGAACCTGCGGAAGGATCATTACTGAAC--TAGTAATC----CTGAAAGGTCGTGG----CCGGGAGCCCT Phyllosticta_capitalensis_COAD1959 ??????????????GCC--GAAATGACCT-TCTCA-CCCTTGTGTACT-CACTATGTTGCTTTGGCGGGTCGACCT-GGT Phyllosticta_capitalensis_CBS115049 ------AA-----CGCC--GAAATGACCT-TCTCA-CCCTTGTGTACT-CACTATGTTGCTTTGGCGGGTCGACCT-GGT Phyllosticta_capitalensis_CBS123404 ------AA-----CGCC--GAAATGACCT-TCTCA-CCCTTGTGTACT-CACTATGTTGCTTTGGCGGGTCGACCT-GGT Phyllosticta_capitalensis_CBS128856 ------AA-----CGCC--GAAATGACCT-TCTCA-CCCTTGTGTACT-CACTATGTTGCTTTGGCGGGTCGACCT-GGT Phyllosticta_cordylinophila_CPC20261 ------AA------GCC--GAAAGAACCTCTCTCA-CCCTTGTGTACC-CACTATGTTGCTTTGGCGGGCCGACCC-GGT Guignardia_mangiferae_IMI260576 ------AA-----GGCC--CAAAGAACCTCTCTCA-CCCTTGTGTACCTTACCATGTTGCTTTGGCGGGCCGACCC-GGT Phyllosticta_aloeicola_CPC21021 ------AAAAGCCGGCG--GAAAGAGCCCTTCTCA-CCCTTGTGTACCTTACCATGTTGCTTTGGCGGGCCGACCC-GGT Phyllosticta_aloeicola_CPC21020 ------AAAAGCCGGCG--GAAAGAGCCCTTCTCA-CCCTTGTGTACCTTACCATGTTGCTTTGGCGGGCCGACCC-GGT Phyllosticta_brazillianiae_LGMF330 GTAA--AAAGGGACCGCGGGAACGGGACTCCGACACCCCATGTGTACCTTACCATGTTGCTTTGGCGGGCCGACCC-GGT Phyllosticta_foliorum_CBS447_68 CTA---AACAAGGGGCCCCCGAAGGTCCTCTCACA-CCCTTGTGTACCTTACCACGTTGCTTTGGCGGGCCGACCC-GGT Phyllosticta_rubra_CBS111635 CCTAAACAAGGGGGGCCGGGGAAGGTCCTCTCACA-CCCTTGTGTACCTTACCATGTTGCTTTGGCGGGCCGACCC-GGT Phyllosticta_minima_CBS585_84 ------TCAAAGGGGCCGGGGAAGGTCCTCTCACACCCCTTGTGTACCTTACCACGTTGCTTTGGCGGGCCGACCC-GGT Guignardia_rhodorae_CBS901_69 ------AAAAAGCTCCC---GGCGGCCCTCTCTCA-CCCTTGTGTATC-TACCACGTTGCTTTGGCGGGCCGACCCGGGC Phyllosticta_capitalensis_COAD1959 TCCGACCCAGGCGGCCGGCGCCCCCAGCCTTAAC--TGGCCAGGACGCCCGGCTAAGTGCCCGCCAGTATACAAAAC-TC Phyllosticta_capitalensis_CBS115049 TCCGACCCAGGCGGCCGGCGCCCCCAGCCTTAAC--TGGCCAGGACGCCCGGCTAAGTGCCCGCCAGTATACAAAAC-TC Phyllosticta_capitalensis_CBS123404 TCCGACCCAGGCGGCCGGCGCCCCCAGCCTTAAC--TGGCCAGGACGCCCGGCTAAGTGCCCGCCAGTATACAAAAC-TC Phyllosticta_capitalensis_CBS128856 TCCGACCCAGGCGGCCGGCGCCCCCAGCCTTAAC--TGGCCAGGACGCCCGGCTAAGTGCCCGCCAGTATACAAAAC-TC Phyllosticta_cordylinophila_CPC20261 TCTGACCCGGGCGGCCGGCGCCCCCAGCCTCTCG-CAGGCCAGGACGCCCGGCTAAGTGCCCGCCAGTATACAAAAC-TC Guignardia_mangiferae_IMI260576 TTCGACCCGGGCGGCCGGCGCCCCCAGCCCCCAG--GGGCCAGGACGCCTGGCTAAGTGCCCGCCAGTATACAAAAC-TC Phyllosticta_aloeicola_CPC21021 TTCGACCCGGGCGGCCGGCGCCCCCAGCCCTACT--CGGCCAGGACGCCCGGCCAAGTGCCCGCCAGTATACAAAAC-TC Phyllosticta_aloeicola_CPC21020 TTCGACCCGGGCGGCCGGCGCCCCCAGCCCTACT--CGGCCAGGACGCCCGGCCAAGTGCCCGCCAGTATACAAAAC-TC Phyllosticta_brazillianiae_LGMF330 TTCGACCCGGGCGGCCGGCGCCCCCAGCCCAGAC-TGGGCCAGGACGCCCGGCTAAGCGCCCGCCAGTATACAAAACTTC Phyllosticta_foliorum_CBS447_68 TTCGACCCGGGCGGCCGGCGCCCCCAGCCCTCCA--GGGCCAGGACGTCAGGCCAAGCGCCCGCCAGTAAACAAAAC-TC Phyllosticta_rubra_CBS111635 TTCGACCCGGGCGGCCGGCGCCCCCAGCCCTCAC--CGGCCAGGACGTCAGGCTAAGCGCCCGCCAGTATACAAAAC-TC Phyllosticta_minima_CBS585_84 TTCGACCCGGGCGGCCGGTGCCCCCAGCCCTTCCGGGGGCCAGGACGCCAGGCTAAGCGCCCGCCAGCATACCAAAC-TC Guignardia_rhodorae_CBS901_69 TTCGACCCAGGCGGCCGGCGCCCCCAGCCCCCTAGGGGGCCAGGACGCTAGGCTAAGTGCCCGCCAGTAAACAAAAC-TC Phyllosticta_capitalensis_COAD1959 AAGAATTCATTTTGTGAAGTCCTGATATA-TCATTTAATTGATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_capitalensis_CBS115049 AAGAATTCATTTTGTGAAGTCCTGATATA-TCATTTAATTGATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_capitalensis_CBS123404 AAGAATTCATTTTGTGAAGTCCTGATATA-TCATTTAATTGATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_capitalensis_CBS128856 AAGAATTCATTTTGTGAAGTCCTGATATA-TCATTTAATTGATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_cordylinophila_CPC20261 AAGCGATTATTTTGTGAAGTCCTGATATA-TCATTCAATTGATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Guignardia_mangiferae_IMI260576 AAGCGATTATTTTGTGAAGTCCTGATATA-TCATTCAATTGATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_aloeicola_CPC21021 AAGCGATTATTTTGTGAAGTCCTGATATA-TCATTCAATTGATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_aloeicola_CPC21020 AAGCGATTATTTTGTGAAGTCCTGATATA-TCATTCAATTGATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_brazillianiae_LGMF330 CAGCGATTATTGGGTGCAGTCCTGATGAATTTATTCAATGAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_foliorum_CBS447_68 CAGCGATTATTTCATGCGGTCCTGATAAA-TTATTCAATTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_rubra_CBS111635 AAGCGATTATTTCGTGTAGTTCTGATAAA-TTATTCAATTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_minima_CBS585_84 CAGCGATTATTTCGTGTCGTTCTGATGAA-TTATTCAATTAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Guignardia_rhodorae_CBS901_69 CAGCGATTATTTCGTGCAGTCCTGATAAA-TCATTTAATGAATTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATC Phyllosticta_capitalensis_COAD1959 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_capitalensis_CBS115049 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_capitalensis_CBS123404 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_capitalensis_CBS128856 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_cordylinophila_CPC20261 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Guignardia_mangiferae_IMI260576 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_aloeicola_CPC21021 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_aloeicola_CPC21020 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_brazillianiae_LGMF330 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_foliorum_CBS447_68 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGATTTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_rubra_CBS111635 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_minima_CBS585_84 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Guignardia_rhodorae_CBS901_69 GATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGC Phyllosticta_capitalensis_COAD1959 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCAACGTCCG Phyllosticta_capitalensis_CBS115049 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCAACGTCCG Phyllosticta_capitalensis_CBS123404 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCAACGTCCG Phyllosticta_capitalensis_CBS128856 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCAACGTCCG Phyllosticta_cordylinophila_CPC20261 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCGACGTCCG Guignardia_mangiferae_IMI260576 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCGACGTCCG Phyllosticta_aloeicola_CPC21021 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCTCTGCTTGGTATTGGGCGACGTCCG Phyllosticta_aloeicola_CPC21020 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCACCACTCAAGCTCTGCTTGGTATTGGGCGACGTCCG Phyllosticta_brazillianiae_LGMF330 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAAAAC-CTCAAGCTCTGCTTGGTATTGGGCGACGTCCG Phyllosticta_foliorum_CBS447_68 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCGACGTCCG Phyllosticta_rubra_CBS111635 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCGACGTCCG Phyllosticta_minima_CBS585_84 GCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCGACGTCCG Guignardia_rhodorae_CBS901_69 GCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTACACACTCAAGCTCTGCTTGGTATTGGGCATCGTCGG Phyllosticta_capitalensis_COAD1959 CTGCCGGACGTGCCTTGAAGACCTCGGCGACGGCGTCCTAGCCTCGAGCGTAGTAGTAAAATATCTCGCTTTGGAGTGCT Phyllosticta_capitalensis_CBS115049 CTGCCGGACGTGCCTTGAAGACCTCGGCGACGGCGTCCTAGCCTCGAGCGTAGTAGTAAAATATCTCGCTTTGGAGTGCT Phyllosticta_capitalensis_CBS123404 CTGCCGGACGTGCCTTGAAGACCTCGGCGACGGCGTCCTAGCCTCGAGCGTAGTAGTAAAATATCTCGCTTTGGAGTGCT Phyllosticta_capitalensis_CBS128856 CTGCCGGACGTGCCTTGAAGACCTCGGCGACGGCGTCCTAGCCTCGAGCGTAGTAGTAAAATATCTCGCTTTGGAGTGCT Phyllosticta_cordylinophila_CPC20261 CTGCCGGACGCGCCTCGAAGACCTCGGCGACGGCGTCATAGCCTCGAGCGTAGTAGTAAAATATCTCGCTTTGGAGTGCT Guignardia_mangiferae_IMI260576 CTGCCGGACGCGCCTCGAAGACCTCGGCGACGGCGTCTCAGCCTCGAGCGTAGTAGT--AATATCTCGCTTTGGAGTGCT Phyllosticta_aloeicola_CPC21021 CTGCCGGACGCGCCTCGAAGACCTCGGCGACGGCGTCTCAGCCTCGAGCGTAGTAGC--AATATCTCGCTCTGGAGTGCT Phyllosticta_aloeicola_CPC21020 CTGCCGGACGCGCCTCGAAGACCTCGGCGACGGCGTCTCAGCCTCGAGCGTAGTAGC--AATATCTCGCTCTGGAGTGCT Phyllosticta_brazillianiae_LGMF330 CTGCCGGACGCGCCTCGAAGACCTCGGCGATGGCGCCTCAGCCTCGAGCGTAGTAGT--AACATCTCGCTTTGGAGGACT Phyllosticta_foliorum_CBS447_68 CTGCCGGACGCGCCTCGAAGACCTCGGCGACGGCGTCCCAGCCTCGAGCGTAGTAGTAAAATATCTCGCTCTGGAGTGCT Phyllosticta_rubra_CBS111635 CTGCCGGACGCGCCTCGAAGACCTCGGCGACGGCGTCTTAGCCTCGAGCGTAGTAGT--AACATCTCGCTTTGGAGTGCT Phyllosticta_minima_CBS585_84 CTGCCGGACGCGCCTCGAAGACCTCGGCGACGGCGTCTCAGCCTCGAGCGTAGTAGTAAAAT-TCTCGCTTTGGAGCGCT Guignardia_rhodorae_CBS901_69 CCTTCTGACGTGCCCCGAAGACCTCGGCGACGGCGTCCCAGCCTCGAGTGTAGTAGC--AATATCTCGCTTTGGAGGATG Phyllosticta_capitalensis_COAD1959 GGGCGACGGCCGCCGGACAGTCGCCTCACATTTTCTTTGAGCGCAGGGCGGATCGCTCGTCGCGCCACCTGGTGCCGCCT Phyllosticta_capitalensis_CBS115049 GGGCGACGGCCGCCGGACAGTCGCCTCACATTTTCTTTGAGCGCAGGGCGGATCGCTCGTCGCGCCACCTGGTGCCGCCT Phyllosticta_capitalensis_CBS123404 GGGCGACGGCCGCCGGACAGTCGCCTCACATTTTCTTTGAGCGCAGGGCGGATCGCTCGTCGCGCCACCTGGTGCCGCCT Phyllosticta_capitalensis_CBS128856 GGGCGACGGCCGCCGGACAGTCGCCTCACATTTTCTTTGAGCGCAGGGCGGATCGCTCGTCGCGCCACCTGGTGCCGCCT Phyllosticta_cordylinophila_CPC20261 GGGCGACGGCCGCCGGACAGTCGCCTCACATTTTCTTTGAGCGCAGGGCGGATCGCTCGTCGCGCCACCTGGTGCCGCCT Guignardia_mangiferae_IMI260576 GGACGACGGCCGCCGGACAGTTGCCTCACATTTTCTTTGAGCGCAGGGCGG-TCGCTCGCCGCGCCATCTGGTGCCGCCT Phyllosticta_aloeicola_CPC21021 GGACGGCGGCCGCCGGACAGTTGTCTTCCGTTTTCTTTGAATGCAGGGCGG-TCGCTCGCCGCGCCACCGGGTGCCGCGT Phyllosticta_aloeicola_CPC21020 GGACGGCGGCCGCCGGACAGTTGTCTTCCGTTTTCTTTGAATGCAGGGCGG-TCGCTCGCCGCGCCACCGGGTGCCGCGT Phyllosticta_brazillianiae_LGMF330 GGGTGCTGGCCGCCGGACAGTTGCTTCACACTTTCTTTGAGCGCAGGGCGGCTCACTCGCCGCGCCACCTTTGGCCGTCT Phyllosticta_foliorum_CBS447_68 GGGCGTTGGCCGCCGGACAGTCGCCTCACTTTTTCTTTGAGCGCAGGGCGCCTCGCTCGTCGCGCCACCATTTGCCGTCT Phyllosticta_rubra_CBS111635 AGGCGTTGGCCGCCGGACAGTCGCCTCACATTTTCTTTGAGCGCAGGGCGGCCAGCTCGTCGCGCCACCTTTTGCCGTCT Phyllosticta_minima_CBS585_84 GGACGTCGGCCGCCGGACAGTCGCC-CGCATTTTC-TTGAGCGCAGGGCGGCCAGGCCATCGCGCCACCTGGTGCCGTCT Guignardia_rhodorae_CBS901_69 GGGCGACGGCCGCCGGACAGTTGCCACACGTTGTCTTTGAGCGCAGGGCGGCTCGCTCGCCGCGCCACCTTTTGCCGTCT Phyllosticta_capitalensis_COAD1959 CGCCTGAGGGGCATTTTTTGGGTGGTGGGGTCGGGCGCTACGCTAAGCTGCTTTGGCGCCTTCGCCAACATGGCCCAAAG Phyllosticta_capitalensis_CBS115049 CGCCTGAGGGGCATTTTTTGGGTGGTGGGGTCGGGCGCTACGCTAAGCTGCTTTGGCGCCTTCGCCAACATGGCCCAAAG Phyllosticta_capitalensis_CBS123404 CGCCTGAGGGGCATTTTTTGGGTGGTGGGGTCGGGCGCTACGCTAAGCTGCTTTGGCGCCTTCGCCAACATGGCCCAAAG Phyllosticta_capitalensis_CBS128856 CGCCTGAGGGGCATTTTTTGGGTGGTGGGGTCGGGCGCTACGCTAAGCTGCTTTGGCGCCTTCGCCAACATGGCCCAAAG Phyllosticta_cordylinophila_CPC20261 CGCCTGAGGGGCATTTTT-GGGTGGTGGGGTCGGGCGCTACGCTAGACTGCTTTGGCGCCTTCGCCAACATGGCCCAAAG Guignardia_mangiferae_IMI260576 CGCCTGAGGGGCATTTTTTGGGTGGTGGGGTCGGGCGCTGCGCTAAGCTGCTTTGGCGCCTTCGGCAACATGGCCCAAAG Phyllosticta_aloeicola_CPC21021 CGCCTGAGGGGCATTTTTTGGGTGGTGGGGTCGGGCGCTGTGCTAAGCTGCTTTGGCGCGTTCGCCAACATGGCCCAAAG Phyllosticta_aloeicola_CPC21020 CGCCTGAGGGGCATTTTTTGGGTGGTGGGGTCGGGCGCTGTGCTAAGCTGCTTTGGCGCGTTCGCCAACATGGCCCAAAG Phyllosticta_brazillianiae_LGMF330 CGCTCGTGGGGCATCTCT----TGGTGGGGTCGG--GCTGCGCTAAGCTGCTTTTGCGCGTTCGGCAACATTGCCTAAAG Phyllosticta_foliorum_CBS447_68 CGCTCGAGGGGCATTTTTT---TGGTGGGGTCGG--GCTGCGCTAAGCTGCTTTGGCGCGTTCGGCAATATCGCCCGAAG Phyllosticta_rubra_CBS111635 CGCTCCATGGCCATTTTTT---TGGTGGGGTCGG--GCTGCGCTAGGCTGCTTTGGCGCATTCGGCAATATCGCCCGAAG Phyllosticta_minima_CBS585_84 TGCTCGAGGCGCAATTTT----TGGTGGGGTCGG--GCCGCGCTAAGCTGCTTTGGCGCGTTCGGCAATCTCGCCCGAAG Guignardia_rhodorae_CBS901_69 CGCTCGAGGCGCATTTTTT---TGGTGGGGTCGG--GTCGCGCTAGACTGCTTTGG--------------------GAAG Phyllosticta_capitalensis_COAD1959 CA----------------------GCCCTGCGCGT--------CACTTCACTTGC---GTCGCAC-AACATTTTGCTAAC Phyllosticta_capitalensis_CBS115049 CA----------------------GCCCTGCGCGT--------CACTTCATTTGC---GTCGCAC-AACATTTTGCTAAC Phyllosticta_capitalensis_CBS123404 CA----------------------GCCCTGCGCGT--------CACTTCACTTGC---GTCGCAC-AACATTTTGCTAAC Phyllosticta_capitalensis_CBS128856 CA----------------------GCCCTGCGCGT--------CACTTCATTTGC---GTCGCAC-AACATTTTGCTAAC Phyllosticta_cordylinophila_CPC20261 CA----------------------GCCCTGCGCAT--------CACCTCACTCGC---GTCGCAC-AGCATTTCGCTAAC Guignardia_mangiferae_IMI260576 CA----------------------GCCCTGCGCAT--------CACCTCA-TTGT---GTCGCAC-AACATTTTGCTAAC Phyllosticta_aloeicola_CPC21021 CA----------------------GCCCTCCGCAC--------CACTTCACTTGC---GTTGCAC-AACATGTTGCTAAC Phyllosticta_aloeicola_CPC21020 CA----------------------GCCCTCCGCAC--------CACTTCACTTGC---GTTGCAC-AACATGTTGCTAAC Phyllosticta_brazillianiae_LGMF330 CGGCCGTGTTGCGCCCGAC-GGTCGTCCTGCGCACT-------CACCTCA-TTCG---GTCGCACAAACTTTTTGCTAAC Phyllosticta_foliorum_CBS447_68 CAGGATTTTTGCGCCCGACTTGTCGCCCTGCGCAACA------CACCTCCCTTTGATCGTCGC---ATCATTTTGCTAAC Phyllosticta_rubra_CBS111635 CAGCATTTTTGCGCCCGAC-GGTCGCCCTGCGCACT-------CACTTCACATCA---ATCGC---AACATTCTGCTAAC Phyllosticta_minima_CBS585_84 CAGCATATTTGCGCCCGAC-GGTCGCCCTGCGCACCCACTCCGCACTTCGCATCG---GTCGC---AACATTCCGCTAAC Guignardia_rhodorae_CBS901_69 CAACATTGTCGCGCCCGAT-GGTCGCCCTGCTCACCCTCT---CACCTCACCTCG---GTCGC---AACATTTTTCTAAC Phyllosticta_capitalensis_COAD1959 GCCCTCCCAGGAAGCCGCCGAGCTCGGCGATGACGCGCCCCGCGCTGTTTTCCGTAAGTCCCGCCCTGCCTCAGCTGTCC Phyllosticta_capitalensis_CBS115049 GCCCTCCCAGGAAGCCGCCGAGCTCGGCGATGACGCCCCCCGCGCTGTTTTCCGTAAGTCCCGCCCTGCCTCAGCTGTCC Phyllosticta_capitalensis_CBS123404 GCCCTCCCAGGAAGCCGCCGAGCTCGGCGATGACGCGCCCCGCGCTGTTTTCCGTAAGTCCCGCCCTGCCTCAGCTGTCC Phyllosticta_capitalensis_CBS128856 GCCCTCCCAGGAAGCCGCCGA??????CGATGACGCGCCCCGCGCTGTTTTCCGTAAGTCCCGCCCTGCCTCAGCTGTCC Phyllosticta_cordylinophila_CPC20261 GCCCTCCAAGGAAGCCGCCGAGCTCGGCGATGACGCGCCCCGCGCTGTTTTCCGTAAGTTCCGCCCTGCCTCAGCTGTCC Guignardia_mangiferae_IMI260576 GCCCTCTCAGGAAGCCGCCGAGCTCGGCGATGACGCGCCCCGCGCTGTTTTCCGTAAGTCCCGCCCTGCCTCAGCTGTCC Phyllosticta_aloeicola_CPC21021 GCCCTCCCAGGAAGCCGCCGAGCTCGGCGATGACGCGCCCCGCGCTGTTTTCCGTAAGTCCCGCCCTGCCTCAGCTGTCC Phyllosticta_aloeicola_CPC21020 GCCCTCCCAGGAAGCCGCCGAGCTCGGCGATGACGCGCCCCGCGCTGTTTTCCGTAAGTCCCGCCCTGCCTCAGCTGTCC Phyllosticta_brazillianiae_LGMF330 GCCCTCGCAGGAAGCCGCCGAGCTCGGCGATGACGCGCCCCGCGCCGTTTTCCGTAAGTGCCGCCCTGCCTCAGCTGTCC Phyllosticta_foliorum_CBS447_68 GCCCTCCCAGGAA??????????????CGATGACGCGCCCCGCGCTGTTTTCCGTAAGTCCCGCCCTGCCTCAGCTGTCC Phyllosticta_rubra_CBS111635 GCCCTCGTAGGAAGCCGC?????????TGATGATGCGCCCCGCGCTGTTTTCCGTAAGTCCCGTCCTGCCTCAGCTGTCC Phyllosticta_minima_CBS585_84 GCCCTCTCAGGAAG?????????????CGATGATGCGCCCCGCGCTGTTTTCCGTAAGTACCGCCCCGCCCCAGCTGTTC Guignardia_rhodorae_CBS901_69 GCCCCTCCAGGAAGCCGCCGAGCTCGGTGATGATGCGCCCCGCGCTGTTTTCCGTAAGTCCCGCCCTGCCTCAGCTGTCC Phyllosticta_capitalensis_COAD1959 GAGGGCCGATTAGGCG-CCCGGAAGCTCGATGAGTTGAGATTTGCCAACTGACGCGCTACAGCCTCCATTGTCGGTCGTC Phyllosticta_capitalensis_CBS115049 GAGGGCCGATTAGGCG-CCCGGAAGCTCGATGAGTTGAGATTTGCCAACTGACGCGCTACAGCCTCCATTGTCGGTCGTC Phyllosticta_capitalensis_CBS123404 GAGGGCCGATTAGGCG-CCCGGAAGCTCGATGAGTTGAGATTAGCCCACTGACGCGCTACAGCCTCCATTGTCGGTCGTC Phyllosticta_capitalensis_CBS128856 GAGGGCCGATTAGGCG-CCCGGAAGCTCGATGAGTTGAGATTTGCCAACTGACGCGCTACAGCCTCCATTGTCGGTCGTC Phyllosticta_cordylinophila_CPC20261 AAGGGCCGATTAGGCG-CCGGGAAGCTCGATGAGTTGAGATTTGCCCACTGACGCGCTACAGCCTCCATTGTCGGCCGTC Guignardia_mangiferae_IMI260576 GAGGGCCGATTAGGCG-CCCGGAAGTTGGAAGAGTTGAGATTCGCCCGCTGACGCTCTGTAGCCTCCATTGTCGGTCGTC Phyllosticta_aloeicola_CPC21021 GAGGGCCGATCAGGCG-CCCGGAAGGTCGATGAAGTGAAATTTGCCTGCTGACGCCATGTAGCCTCCATTGTCGGTCGTC Phyllosticta_aloeicola_CPC21020 GAGGGCCGATCAGGCG-CCCGGAAGGTCGATGAAGTGAAATTTGCCTGCTGACGCCATGTAGCCTCCATTGTCGGTCGTC Phyllosticta_brazillianiae_LGMF330 GAGGGCCGATCAGGCG-CCTGGAAGCTCGATGAGTTGAGATTCACCAGCTGACGCTTTGCAGCCTCCATTGTCGGTCGTC Phyllosticta_foliorum_CBS447_68 GAGGGCCGATTAGGCG-CCCGGAAGCTCAAGATGTTGAGATTTGCCTGCTGACGCTCTACAGCCTCCATTGTCGGTCGTC Phyllosticta_rubra_CBS111635 GAGGGCCGATTAGGCG-CCCGGAAGCTCAAGATGCTGAGGTTTGCCCGCTAACGCTCTACAGCCTCCATTGTCGGTCGTC Phyllosticta_minima_CBS585_84 GAGGGCCGATCAGGCACCCCGGAAGCTCAAGACGTTGAGAATGGCCTGCTGACGCTCTACAGCCTCCATTGTCGGTCGTC Guignardia_rhodorae_CBS901_69 GAGGGCCGATTAGGCGCCCCGGGAGCTCATTGTGTTGAGAACAACC-GCTGACGCTCTGCAGCCTCCATCGTCGGTCGTC Phyllosticta_capitalensis_COAD1959 CCCGTCACCATGGGTATGTTTTCTCGCAGCGTCAGGC---------------------CCGCCGCCGTCGCTTCTGGCGC Phyllosticta_capitalensis_CBS115049 CCCGTCACCATGGGTATGTTTTCTCGCAGCGTCAGGC---------------------CCGCCGCCGTCGCTTCTGGCGC Phyllosticta_capitalensis_CBS123404 CCCGTCACCATGGGTATGTTTTCTCGCAGCGTCAGGC---------------------CCGCCGCCGTCGCTTCTGGCGC Phyllosticta_capitalensis_CBS128856 CCCGTCACCATGGGTATGTTTTCTCGCAGCGTCAGGC---------------------CCGCCGCCGTCGCTTCTGGCGC Phyllosticta_cordylinophila_CPC20261 CCCGTCACCATGGGTATGTTTTCTCGCAGCGTCAGGC---------------------CCTCCGCCGTCGCTTCTGGCGC Guignardia_mangiferae_IMI260576 CCCGTCACCATGGGTATGTTTTCTCGCAGCGTCAGGC---------------------CCGCCGCCGTCGCTTCTGGCGC Phyllosticta_aloeicola_CPC21021 CCCGTCACCATGGGTATGTTTTCCCGCAGCGTCAGGC---------------------CCGCCGCCGTCGCTTCTGGCGC Phyllosticta_aloeicola_CPC21020 CCCGTCACCATGGGTATGTTTTCCCGCAGCGTCAGGC---------------------CCGCCGCCGTCGCTTCTGGCGC Phyllosticta_brazillianiae_LGMF330 CCCGTCACCATGGGTATGTTTTCTCGCAGCGTCAGGC---------------------CCGCCGCCGTTGCTTCTGGCGC Phyllosticta_foliorum_CBS447_68 CCCGTCACCATGGGTACGTTTTCTCGCAGCGTCAGGC---------------------CCGCAGCCGTCGCTTCTGGCGC Phyllosticta_rubra_CBS111635 CCCGTCACCATGGGTATGTTTTCTCGCAGCGTCAGGC---------------------CCGCTGCCGTTGCTTCTGGCGC Phyllosticta_minima_CBS585_84 CCCGTCACCATGGGTATGTTATCCGGCAGCTTCGGGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGCTTCTGATGC Guignardia_rhodorae_CBS901_69 CCCGTCACCATGGGTATGTTTTCTCGCCGCGTCAGGC---------------------CCGCCG---------CTGGCGC Phyllosticta_capitalensis_COAD1959 TAACGCCCCGCAGTATCATGATTGGCATGGGCCA Phyllosticta_capitalensis_CBS115049 TAACGCCCCGCAGTATCATGATTGGCATGGGCCA Phyllosticta_capitalensis_CBS123404 TAACGCACCGCAGTATCATGATTGGCATGGGCCA Phyllosticta_capitalensis_CBS128856 TAACGCCCCGCAGTATCATGATTGGCATGGGCCA Phyllosticta_cordylinophila_CPC20261 TAACGCACCGCAGTATCATGATTGGCATGGGCCA Guignardia_mangiferae_IMI260576 TAACGCACCTCAGTATCATGATTGGTATGGGCCA Phyllosticta_aloeicola_CPC21021 TAACGCGCCGCAGTATCATGATTGGTATGGGCCA Phyllosticta_aloeicola_CPC21020 TAACGCGCCGCAGTATCATGATTGGTATGGGCCA Phyllosticta_brazillianiae_LGMF330 TAACACACCCCAGTATCATGATTGGCATGGGCCA Phyllosticta_foliorum_CBS447_68 TAACGCACCGCAGTATCATGATTGGCATGGGCCA Phyllosticta_rubra_CBS111635 TAACACACCGCAGTATCATGATTGGCATGGGCCA Phyllosticta_minima_CBS585_84 TAACGCACGGCAGTATCATGATTGGCATGGGCCA Guignardia_rhodorae_CBS901_69 TAACGCACCGCAGTATCATGATCGGTATGGGCCA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1074; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1074; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1074; END; BEGIN TREES; Title 'Trees from "Phyllosticta_its_ef_act.nex.con.tre"'; LINK Taxa = Taxa; TRANSLATE [0] n0 Phyllosticta_capitalensis_COAD1959, [1] n1 Phyllosticta_capitalensis_CBS115049, [2] n2 Phyllosticta_capitalensis_CBS123404, [3] n3 Phyllosticta_capitalensis_CBS128856, [4] n4 Phyllosticta_cordylinophila_CPC20261, [5] n5 Guignardia_mangiferae_IMI260576, [6] n6 Phyllosticta_aloeicola_CPC21021, [7] n7 Phyllosticta_aloeicola_CPC21020, [8] n8 Phyllosticta_brazillianiae_LGMF330, [9] n9 Phyllosticta_foliorum_CBS447_68, [10] n10 Phyllosticta_rubra_CBS111635, [11] n11 Phyllosticta_minima_CBS585_84, [12] n12 Guignardia_rhodorae_CBS901_69; TREE con_50_majrule = (n12:0.04470855,((n9:0.03131834,(n10:0.03225455,n11:0.05371995):0.010487):0.01422913,(n8:0.07685301,((n6:0.0006872011,n7:0.0006892629):0.05680069,(n5:0.01556121,(n4:0.02052314,(n2:0.001738366,(n0:0.0008065208,(n1:0.001749229,n3:0.0007222867):0.001739179):0.002785341):0.02908125):0.02390517):0.006995203):0.03386922):0.01123879):0.04470855)[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1442337255427; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7375805404675184084; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3368784754497904209; mqVersion 303; checksumv 0 3 2662675956 null getNumChars 1074 numChars 1074 getNumTaxa 13 numTaxa 13 short true bits 15 states 15 sumSquaresStatesOnly 267255.0 sumSquares 267255.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 962; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7375805404675184084 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7375805404675184084; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 298; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 890; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7375805404675184084 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 943.1442336384033.3901790798078765800; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 890; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3368784754497904209 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 275; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 890; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;