#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS Sporidiobolus_johnsonii_JN246542 Rogersiomyces_malaysianus_KT779286 Sistotrema_sernanderi_AF518650 Thanatephorus_cucumeris_AF354119 'Auricularia auricula-judae AF291289' Ceratobasidium_cornigerum_AY152405 Sistotremastrum_niveocremeum_JX310442 Sistotrema_confluens_AY647214 Hydnum_repandum_KF294643 Haplotrichum_conspersum_DQ521414 Paullicorticium_ansatum_AY586693 Filobasidium_capsuligenum_EF611233 Cryptococcus_neoformans_FJ914904 Ustilago_maydis_FJ644528 Cantharellus_cibarius_KF294658 Craterellus_cornucopioides_AF105305 ; END; BEGIN CHARACTERS; TITLE LSU; DIMENSIONS NCHAR=861; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Sporidiobolus_johnsonii_JN246542 ---------------------------------cgggaaaagctcaaatttgtaatctggcgctttc--ggcgtccgagttgtaatctcgagaagtgttttccgcgtcagaccgcacacaagtctcctggaacggagcgtcatag-tggtgagaacccagtacacggtgcggatgcctgatgctttgtgatacactttcgaagagtcgagttgtttgggaatgcagctcaaattgggtggtaaattccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagtt-aacagtacgtgaaattgttggaagggaaacgcttgaagtcagacttgctattcggagcttg-----------------------cttcgattcgcaggcccgcatcagtttttcggggcggaaaatcgtagagagaaggtagcagtttcggctgtgttatagctttctactggattcgtcctgggggactgaggaacgcagcgggcttcgcctatgcttatgcgggtggaatggctttaaacgac--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Rogersiomyces_malaysianus_KT779286 ----------------------ggcgagtgagc--gggaaagctcaaatttaaaatctggcagtctttggctgtccgagttgtaatctagagaagcgttttccgcgctggactgtacacaagtttcctggaacggaacatcatagagggtgagaatcccgtccttggtacagactcccagtgctctgtgatgcgctttccacgagtcgagttgtttgggattgcagctcaaaatgggaggtaaattccttctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagttaaacagtacgtgaaattgttaaaagggaaacgcttgaagtcagtcgcgtctgcttggactcagccttgcctcggcttggtgcatttcct-gcagacgggccaacgtccatgtcttgcgccggaaaaggggtgagggaatgtggctcctccgggagtgttatagcctttgctcgtatacgacgcgagatatggagtggaacagcatgcttcggtggtgcttgtgttggcataatggctttaaacgacccgtcttgaaacacggaccaaggagtctaacatgtctgcgagtgtttgggtggaaaacccgagcgcgaaatgaaagtgatagctgggatccctttgggaggcaccggcgccccgagctgaccttctgtgacgcatcggaggtagag------------------------------------------------------------------------------------------------------------------------------------------- Sistotrema_sernanderi_AF518650 taacaaggattcccctagtaacggcgagtgaagcgggatgagctcaaatttaaaatctggtgtcctttgggcatccgagttgtagtctagagaagcattttccgtgtcggaccatgtacaagtctcctggaacggagcgtcatagagggtgagaatcccgttcttgacatggacccccgatgctatgtgatgtgctctcaaagagtcgagttgtttgggattgcagctcaaaatgggaggtaaattccttctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagttaaacagtacgtgaaattgttaaaagggaaacgattgaagtcagtcgcgtctgcttggactcagccttacttcggtttggtgcatttcctagtagacgggccagcgtcgatgttagccgctggaaaaaggtgtagggaatgtggctctttcgggagtgttatagccctatgtcatatgcagtggccggtatcgagtgtaacagcacgcttttgcggtgcttgtgctggcgtaatggctttaaacgacccgtcttgaaacacggaccaaggagtctaacatgtctgcgagtgtttgggtggtaaacccgagcgcggaatgaaagtgatagctgggatctccaagagaggcaccggcgccccgagctgatcttctgtgacgcatcggaggtaagcatatatgttgggacccgaagatggtgaactatgcctgaagggcgaagccagaggaaactctggtggaggctcgtagcgattctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaagactaatcgaaccat Thanatephorus_cucumeris_AF354119 taacaaggattcccctagtaacggcgagtgaagcgggaagagctcaaatttaaaatctggcagtgtat-tctgtccgagttgtagtctagagaagcatcatccgtgctggaccatgtacaagtctcttggaacagagcgtcatagagggtgagaatcccgtccttgacatggactcccagtactttgtgttgtgctctcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggagagagagttaaacagtacgtgaaattgttgaaatggaaacgcttgaagtcagtcgcgttctctgggattcagccttgcttttgcttggtgcatttcccggtctacgggccagcatgaattttgaccaatggaaaaaggcttggggaatgtggcaccttcgggtgtgttatagccccttgtcacatacgttggttgggattgaggtcttaggcacgcttcggttgtgcttatgctggcgtaatggctttaaacgacccgtcttgaaacacggaccaaggagtctaacatgtctgcaagtgtttgggtgcaaaacccgagcgcgtaatgaaagtgatagttgggacctctcagaggggcaccgacgcccggaccagaccttctgtgacggatccgaggtaagcatatatgttgggacccgaagatggtgaactatgcctgcagggtgaagccagaggaaactctggtggaggctcgtagcgattctgacgtgcaaatcgatcgtcaaatgtgggtataggggcgaaagactaatcgaaccat 'Auricularia auricula-judae AF291289' taacaaggattcccctagtaacggcgagtgaagcgggatgagctcaaatttgaaatctggcggtctaaggccgtccgagttgtaatctagagaggtgttttccgtgccggaccgtgtacaagtcccttggaacagggcgtcatagagggtgagaatcccgtccatgacacggactcccggtgctctgtgatacaccttcgaagagtcgagttgtttgggaatgcagctcaaaacgggtggtaaattccatctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgcttgaagtcagtcgcgtccgcagggactcagccttgcttctgcttggtgcacttctctgtggatgggccagcatcgattttggtcgccggaaaagggcgggaggaatgtggcagctttcgctgtgttatagcctctcgtcgtacacggtggtcgggatcgaggactgcagcacgccttggtcggggtt-cgcccacgccacggcttaggatgctggcgta--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Ceratobasidium_cornigerum_AY152405 taacaaggattcccctagtaacggcgagtgaagcgggaagagctcaaatttaaaatctggcggtc---acccgtccgagttgtagtctagagaagcatcatttacgctggaccatgtacaagtctcttggaacagagcgtcatagagggtgagaatcccgtccttgacatggactcccagtgttctgtgttgtgctctcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatattggcgaaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggagagagagttaaacagtacgtgaaattgttgaaatggaaacgcttgaagtcagtcgcgttctctgggattcagccttgcttttgcttggtgcatttcctagtctacgggccagcatggatttcgaccgtcggagaagggctgggggaatgtggcactttcgggtgtgttatagccccccgtcgcacacgtcggttgggatcgaggacctcagcacgcttcggttgtgcttatgctggcgtaatggctttaaacgacccgtct--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sistotremastrum_niveocremeum_JX310442 -----------cccctagtagctgcgagtgaagcgggaaaagctcaaatttaaaatctggtggt-ttaggccatccgagttgtagtctagagaagtgttttccgtgctggaccgtgtacaagtctcttggaatagagcgtcatagagggtgagaatcccgtctttgacacggactaccagtgctttgtgatgcactctcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatattggtgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagtaaaccagtacgtgaaattgttgaaagggaaacgattgaagtcagtcgtatctgctagaactcagccttgcttctgcttggtgcattttctagtaggtgggccaacatcaattttgatcaatagacaaaggttataggaatgtggcagtctcggctgtgttatagactataattgtacatattgattgggattgaggaatcc-gggcgcttgcgctgtgg--atgttggcgtaatggctttaaacgacccgtcttgaaacacggaccaaggagtgtaacatgctcgcgagtgtttgggtggtaaacccgagcgcgtaatgaaagtga-agttgggactcttcgtggagggcacgacgcccgagcctgatgttttcggacggcctcgcggtaagcgagtatgttgcgacccgaagatggtgaactattcctgagaggcgaagccagagg-aactctggtggaggctcgtagcgtttctgacttgcaaatcgatcgcaggacttgggtataggggcggaagactaatcta----- Sistotrema_confluens_AY647214 taacaaggattcccctagtaacggcgagtgaagagggataagctcaaaattagaatctggtagtctttggctatccgaattgtagtctatagaggtgttttctgcgctggactgtgtacaagtctcctggaatggaacatcatagagggtgagaatcccgtactcgacacagacccccagtgctatatgatacactctcaacgagtcgagttgtttgggattgcagctcaaagtgggaggtaaattccttctaaagctaaatacaggcgagagaccgatagcgaacaagtaccgtaagggaaagatgaaaagcactttggaaagagagtcaaacagtacgtgaaattgttaaaagggaaacgattgaagtcagtcacgtctactggaatcagcccttacttcggttcggcgcatttccttatagacgggtcagtgtccatgttgactgtcggagaaaactttagggaaggtgactcttc--ggagtgttatagccctaatctatatacggtggttaatatggagtgatacagcacacttcggtggtgcttgtactggcataatggctttaagcgacccgtcttgaaacacggaccaaggagtctaacatgtctgcgagtatttgggtgataaacctaattgcataacgaaagtgatagctgggatccttaagagaggcactagcaccccgagtggatctctagtgacacgtcggaggtaagcatatatgttgggacccgaagatggtgaactatgcctgaagggcgaagccagaggaaactctggtggaggctcgtagcgattctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaagactaatcgaaccat Hydnum_repandum_KF294643 -------gattcccttagt-actgcgagtgaagtgggatgagctcaaatttaaaatctggtagtctctggctgcccgagttgtaatctagagaagtgttttctgtgctggactgtgtttaagtttcctggaatggaacatcatagagggtgagaatcccgtctttgacacagaccgccagtactctgtgatgcactctcaacgagtcgagttgtttgggattgcagctcaaaatgggaggtaaattccttctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagttaaacagtacgtgaaattgttaaaagggaaacaattgaagtcagttgcatctacttggactcagccttactttggtttggtgcatttccttgtggatgggccagtgttcatgttgattactggaaaaggggctagggaatgtggctcttttgggagtgttatagccttggctcatatacagtgattaatatggagtggtacagcatgcttcggtggtgcttgtactggcataatggctttaaatgacccgtcttgaaacacggaccaaggagtctaacatgtctgcaagtatttgggtgataaactcaagtgcgtaatgaaagtgatagctgggaccctcaaagggggcaccagtgccccgagcggatcttctgtgatgcatcggaggtaagcatatatgttgggacccgaagatggtgaactatgcctgaagggtgaagccagaggaaactctggtggaggctcgtagcgattctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaagactaatcgaaccat Haplotrichum_conspersum_DQ521414 taacgaggattcccctagtaacggcgagtgaagcgggaaaagctcaaatttaaaatctggcggtctttggccgtccgagttgtagcctagagaagcgtcttccgcggcggaccatgtacaagtctcctggaacggagcgtcatagagggtgagaatcccgtccttgacatggacccccgtcgctctgcgatgcgctctcgaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagtcaaacagtacgtgaaattgttaaaagggaaacgatcaaagtcagtcgcgtctgtcgggactcagcctagccttggcgtggcgcatttcccggctgacgggccagcgtcgattttggccggcggaaaagggtaggaggaatgtggctcttcaccgagtgttatagcctccgaccgcaaacgccggccgggatcgagccctccggcacgcctcggcggtgcccgcgctggcgtaatggctttgaccgacccgtcttgaaacacggaccaaggagtctaacatgtctgcgagtgtttgggcgaaaaacccgggcgcgtaatgaaagtgatggtcgggacccctcgtgggggcaccgacgcccgtggccgaccttctgtgaagcgcacgaggcaagcatgcatgttgggacccgaagatggtgaactatgcctgaagggtgaagccagaggaaactctggtggaggctcgtagcgattctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaagactaatcgaaccat Paullicorticium_ansatum_AY586693 taacaaggattcccctagtaactgcgagtgaagcgggaaaagctcaaatttgaaatctggcggtttc--accgtccgagttgtatgcttacgaagtgttttcggtgttggaccatgtacaagtcccttggaacagggcgtcatagagggtgagaatcccgtacttgacatggactcccagtgccttgtgatacactttcaaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattccatctaaggctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagtgaaacagtacgtgaaattgctgaaagggaagcgcttgaagtcagtcgcgtctctaggaattcagcct------tgaacggtgtatttcctagttgacgggccaacatcgattttggtcggcggaaatgggcttgaggaatgtggcacctttgggtgtgttatagactcttgtcgcaaacgtcggttgggatcgaggaccgca----gcttcggc--tgg--atgttggcgtaatggctttaaacgacccgtcttgaaacacggaccaaggagtctaacatgtgtgcgagtgtttgggtgttaaacccttgcgcgtaatgaaagtgacaggtgggaggccttaaggctgcaccatcgaccgatccggatctttagtgatggatttgagtgaagcatatatgttgggacccgaagatggtgaactatgcctgaagggtgaagccagaggaaactctggtggaggctcgtagcgattctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaagactaatcgaaccat Filobasidium_capsuligenum_EF611233 ------------------------------------------------------------tagactcagtctatccgagttgtaatctatagaagcagtttccgtgctggcccatgtacaagtcccttggaacagggcgtcatagagggtgagaatcccgttcttgacatggactaccagtgctttgtgatctgttttcaacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaattccatctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagttaaacagtatgtgaaattgttgaaagggaaacgattgaagtcagtcatgtctattgg-actcagcc--ggttctgc-cggtgtatttcctttagatggggtcaacatcagttttgaccgctggataaaggtttgaagaatgtagcactctcgggtgaattatagcttcttgtcatatacagtggttgggactgaggaacgcagcatgccttggccgggatt-cgtccacgtacatgcttaggatg----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cryptococcus_neoformans_FJ914904 taacaaggattcccttagtaacggcgagtgaaccgggaagagctcaaatttgaaatctggcgtcctccgggcgtccgagttgtaatctacagaaacgttttccgtgctggaccgtgtctaagtcccttggaatagggtatcaaagagggtgacaatcccgtacttgacac-gatcaccagtgctctgtgatacgttttctacgagtcgcgttacttgggagtgtagcgcaaaatgggtggtaaactccatctaaagctaaatattggtggaagaccgatagcgaacaagtaccgtgagggaaagatgaaaagcactttggaaagagagttaaacagtacgtgaaattgttgaaagggaaacgattgaagtcagtcgtgtctattgg-gttcagcc--agttctgc-tggtgtattccct-ttagacgggtcaacatcagttctgatcggtggataagggctggaggaatgtggcactcttgggtgtgttatagcctcctgtcgcatacactggttgggactgaggaatgcagctcgccttggccggggtt-cgcccacgttcgagcttaggatg-------ttgaaaaatggctttaaacgac------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Ustilago_maydis_FJ644528 taacaaggattcccctagtaacggcgagtgaagagggaagagcccaagattgaaagctggcgtcttt--ggcgtccgcattgtaatctcaagaagtgttttccgcttcggaccatgcctaagtcccttggaaaagggcatcatagagggtgataatcccgtacatggcatggacgcccgaagctttgtgatacactttctaagagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatgccatctaaggctaaatattggggagagaccgatagcgaacaagtacagtgatggaaagatgaaaagaactttgaaaagagagttaaacagtacgtgaaattgccaaaagggaagggtaggaggtcagagatgcggtctgggattcagccttgcttttgctgggtgtttttctcagattgcaggccaacgtcggttttgggcgctggagaagggtggaaggaatgtggcacctctgggtgtgttatagccttctactggatacagtgaccgagaccgaggacagcagcgggccttggcaccgcttgcgttggcataatggccctctaccacccgtcttgaaacacggaccaaggagtctaacatgtatgcgagtctttgggtggcaaacccataggcgcaatgaaagtgacaggtgggatccg--caaggtgcaccatcgaccgatcctcacgtctagtcgtggatttgagtaaagcatacctgttgggacccgaagatggtgaactatgcctgaagggtgaagccagaggaaactctggtggaggctcgtagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaagactaatcgaaccat Cantharellus_cibarius_KF294658 -------gattcccccactaactgcgagtgaagagggaagagctcatcattggaatctggcagtgtttcactgtccgagttgtagatgaggagtagtccgtctggactgcatggcgtccaagtacaatagggtgggacatcatagagggtgacaatcccgtccttgacgccaagtgcaagtctattacgatgctatctcagagagtcgagcagtttgggattgctgcttaaaatgggaggtagattccttctaaagctaaatacaggcgagagaccgatagagaacaagtaccgcaagggaaagatgaaaagcactctgtgaagggagtcaaaagg--cgtgaaattgttgcgagagaagcgattcaagtcagcgtagctagcccaaa----gcgt--------cttcgc-----tttggactagc--tttgccagcggtcttgtcccttaaagagacgtaatatg--tccagcctg---gcgtgca--------------------ca--------ggc----------agc-cccttcgggggcgacatggctggtggaatggcttgaatcgacccgtcttgaaacacggaccaaggagtctaacatgtatgcgagtataagggtggcaaacccgtatgcgcaatgaaagtgatggccatgagacaccctcgtacggccattgcccaagttccgtggtatcccacgaactggagttgagcatacatgctaggacccgaagatggtgaactatgcctggaaagcgaagccaaaggaaactctggtggaggcttgtagcgattctgacgtgcaaatcgatcgtctgatctgggtataggggcgaaagactaatcgaaccat Craterellus_cornucopioides_AF105305 --------------------------------------------------------ctggcagtgattcactgtccgagttgtaaattgaagaaatgtcatccacgctggaccacgtctaaattccacagtatggagtatcagagagggtaataatcccgtctttaacgtggactgccagtgttctgtgatgcactctctcagagtcgagtagtttgggaatgctgctcta-atgggaggtaaactccttctaaagctaaatattggcgagagaccgatagcgaacaagtaccgtgagggaaagatgaaaagaactctgaaaagagagtcaaatagaacgtgaaattgctgaaagggaagcgtttggagtcagacgcgtcttcatgagctcagacttg----gac-aagt-----tacttgaagacgggccagcactcacgaagaccattgaagaaggggtcatggaatgtagctcagtgctgagtgttatagccttgattcaaaagcaatgtgtccttt---------------------gt---ga--gagatgg----acagcacgcaacagttca------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = LSU) = unord: 1 - 861; END; BEGIN TREES; Title LSU; LINK Taxa = Taxa; TRANSLATE [0] 1 Sporidiobolus_johnsonii_JN246542, [1] 2 Rogersiomyces_malaysianus_KT779286, [2] 3 Sistotrema_sernanderi_AF518650, [3] 4 Thanatephorus_cucumeris_AF354119, [4] 5 'Auricularia auricula-judae AF291289', [5] 6 Ceratobasidium_cornigerum_AY152405, [6] 7 Sistotremastrum_niveocremeum_JX310442, [7] 8 Sistotrema_confluens_AY647214, [8] 9 Hydnum_repandum_KF294643, [9] 10 Haplotrichum_conspersum_DQ521414, [10] 11 Paullicorticium_ansatum_AY586693, [11] 12 Filobasidium_capsuligenum_EF611233, [12] 13 Cryptococcus_neoformans_FJ914904, [13] 14 Ustilago_maydis_FJ644528, [14] 15 Cantharellus_cibarius_KF294658, [15] 16 Craterellus_cornucopioides_AF105305; TREE tree_1 = ((15:0.6587250120911328,16:0.367329450809979):0.055926405525851944,((2:0.08179146515098897,(8:0.11445887946048192,9:0.058469412476016454):0.03251123208927453):0.012269879560869962,(3:0.05258430400852523,(10:0.11548489105185478,((4:0.038906860758364636,6:0.02881288732896025):0.04770677912622407,(7:0.1801423586675315,((11:0.06028445394340101,(1:0.2450330782143695,14:0.18460585312545047):0.06856237556096476):0.04196809649541681,(5:0.10282104113569418,(12:0.1017029188605017,13:0.12642871792203936):0.0793440954633701):0.05494948161394713):0.03140914122507944):0.005394131300389942):0.02974592642990747):0.04900918459544575):0.02376295341943203):0.055926405525851944)[% ] [% ] [% setBetweenBits = selected ]; END;