#NEXUS [written Fri Dec 23 15:30:27 BRST 2016 by Mesquite version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Paenibacillus_polymyxa_ATCC_842_644728542 Paenibacillus_stellifer_740911357 Paenibacillus_sabinae_T27_644577332 Paenibacillus_forsythiae_T98_647253425 Paenibacillus_durus_754845762 Paenibacillus_durus_ATCC_35681_647247764 Paenibacillus_zanthoxyli_JH29_647238754 Paenibacillus_wynnii_738763075 Paenibacillus_odorifer_738797248 Paenibacillus_sp._HW567_518752498 Paenibacillus_borealis_754773957 Paenibacillus_sp._CAS34_AMQ84_24835 Paenibacillus_sp._CAR114_AMQ83_02105 Paenibacillus_riograndensis_SBR5_PRIO_4000 Paenibacillus_sonchi_X19_5_748292936 Paenibacillus_graminis_686558660 Paenibacillus_jilunlii_AML91_12595 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1065; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Paenibacillus_polymyxa_ATCC_842_644728542 TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTTGGTAAAGGTTCCATTATGAAGTTGGGTGAGTCTACTCACATGCAAGTGGAAACAATCCCCAGTGGTTCGATTGCTTTGGATATTGCGTTAGGAACGGGCGGCTTTCCAAGAGGCCGGATTATTGAAGTATATGGACCGGAATCATCCGGTAAAACGACAGTAGCTCTTCATGCTATCGCAGAGGTGCAAAAAACAGGCGGACAAGCCGCCTTTATCGATGCCGAGCATGCGCTTGATCCGTCGTATGCGAGCAAGCTGGGTGTCAATATTGATGAGTTGTTACTATCGCAACCAGATACAGGTGAGCAGGCATTGGAGATTGCCGAAGCTCTTGTGCGTAGTGGGGCAGTGGATATTATCGTCATAGACTCTGTAGCGGCACTTGTACCGAAGGCAGAGATTGAAGGCGAAATGGGAGATTCCCATGTCGGTCTTCAAGCGCGTTTGATGTCACAGGCATTACGTAAGCTGTCTGGAGCCATTAATAAATCGAAAACCATTGCTATCTTTATCAACCAGCTCCGTGAAAAAGTAGGTGTTATGTTCGGTAACCCTGAAACTACACCAGGTGGACGTGCTTTGAAGTTTTACTCTACGGTACGTTTGGATGTTCGTCGTATCGAAAGCTTGAAAATGGGTAACGACATCGTGGGTAACCGCACACGTATTAAAGTCGTGAAGAACAAAGTTGCGCCTCCTTTCCGTCAGGCCGAAGTGGATATTATGTACGGTGAGGGTATTTCCAAAGAAGGAAGCTTGATTGACATCGGTACGGAGCATGACATTGTCGACAAGAGCGGAGCTTGGTATTCCTACGAAGGCGAGCGCCTTGGTCAGGGACGTGAGAATGCAAAGCAATTTTTGAAGGAAAATCCGAACATTGCTAGTACGATTGAGCAAAAAATCCGGGTGGCCAGTAATTTGATTACAACAATTGCTCCACCGACAGAAGAAGAGTT---GGCGCAGGAGGCCAAGGAAGAACAGGAATTGCTGGAGCTTGAATAA Paenibacillus_stellifer_740911357 TTGTCAGATCGTCGTGCAGCGCTGGAGATGGCGCTTCGTCAAATTGAGAAACAATTCGGTAAAGGTTCCATTATGAAGCTGGGTGAGTCGACTCATATGCAGGTCGAAATCGTGCCGAGCGGATCGCTGGCTCTTGATATTGCGCTTGGAATCGGCGGCCTTCCGAAAGGCCGGATTATTGAAGTGTACGGACCAGAATCGTCGGGTAAGACGACAGTTGCCCTGCATGCCATTGCTGAAGTACAGAAGGCCGGCGGACAAGCTGCGTTTATTGACGCGGAGCATGCGTTGGACCCAAGCTATGCGAGCAAGCTGGGCGTCAATATTGACGAACTGCTGCTGTCCCAGCCGGATACGGGCGAACAAGCGCTGGAAATCGCCGAAGCGCTGGTGCGCAGCGGCGCGGTTGATATCATTGTCGTCGACTCTGTAGCGGCGCTTGTGCCGAAGGCGGAAATTGAAGGCGAAATGGGAGATTCCCATGTCGGTCTTCAAGCTCGTCTGATGTCCCAGGCTCTTCGCAAGCTGTCCGGGTCGATCAACAAATCGAAGACGATTGCTATCTTCATCAATCAGCTTCGCGAGAAGATCGGCGTTATGTTCGGCAACCCGGAAACGACACCGGGCGGACGCGCGTTGAAGTTCTATTCGACTATTCGTCTTGACGTACGGCGCGTAGAGAGCATCAAGATGGGCAACGACATCGTAGGTAACCGCACCCGCATCAAGGTTGTGAAGAACAAGGTTGCTCCGCCGTTCAAGCAGGCAGACATCGATATCATGTATGGCGAAGGTATTTCGAGAGAAGGCAGTCTTGTAGATATCGGAACGGAAATGGATATCGTCAACAAGAGCGGGGCCTGGTATTCCTATGAAGGCGAGCGTTTAGGCCAAGGCCGTGAGAACGCGAAGCAGTTCCTGAAAGAGAATCAGAACCTGGCCCTTACAATTGAGAACAAGATTCGTGAAGCGAGTAATCTCAGCACTCTTGTAGCCGCTCCGACAGAATCGGAACTGCAAGCGGAGAAA---GAAGAAGAGCAGGCGCTGCTGGAAATCGAATAA Paenibacillus_sabinae_T27_644577332 TTGTCAGATCGTCGTGCGGCGCTTGAAATGGCGCTTCGTCAAATAGAGAAACAATTCGGTAAAGGTTCCATCATGAAACTGGGCGAATCCACCCATATGCAGGTTGAGATCGTACCCAGCGGATCATTGGCTTTAGATATTGCTTTGGGAATTGGCGGTCTCCCTAAAGGCCGTATTATAGAAGTTTACGGGCCGGAATCTTCCGGTAAGACAACGGTCGCTCTGCATGCAATTGCGGAAGTACAGAAGGCGGGCGGACAAGCCGCTTTTATTGACGCAGAACATGCGCTTGATCCAAGCTATGCAAGCAAGCTGGGCGTTAACATCGACGAATTGCTGCTGTCCCAGCCAGATACCGGGGAGCAAGCTCTTGAAATTGCCGAAGCGCTTGTCCGCAGCGGTGCGGTGGACATTATTGTAGTGGACTCCGTTGCGGCATTGGTTCCTAAAGCTGAGATTGAAGGCGAGATGGGCGATTCCCATGTCGGTCTGCAGGCGCGGCTGATGTCTCAGGCTCTGCGCAAGCTGTCCGGCTCCATTAACAAATCGAAGACGATTGCCATTTTCATCAACCAGCTTCGCGAGAAAATCGGCGTCATGTTCGGCAACCCGGAAACAACTCCCGGCGGACGCGCTTTGAAATTCTACTCTACGGTTCGACTCGATGTCCGGCGTGTAGAGAGCATCAAGATGGGCAACGATATGGTAGGCAACCGTACACGGATCAAGGTTGTGAAGAACAAGGTGGCGCCACCGTTCAAACAAGCGGATATCGATATTATGTACGGCGAGGGAATCTCTAGGGAAGGCAGCCTTGTTGATATCGGTACGGAAATGGATATTATCAATAAGAGCGGCGCATGGTACTCTTACGAAGGTGAACGGCTCGGTCAAGGCCGCGAGAATGCGAAGCAGTTCCTGAAGGAGCATTCGGATATAGCGCTTGTGATCGAGAACAAGATTCGTGAAGCGAGCAATCTCACCACTATCGTCGCCACTCCTACCGCGGCGGAGCTTGAGGCCGAGAAG---CAGGAAGAACAGGCACTGCTCGAAATCGAATAA Paenibacillus_forsythiae_T98_647253425 TTGTCAGATCGTCGTGCAGCGCTTGAAATGGCGCTTCGTCAAATAGAGAAACAATTCGGTAAGGGTTCCGTTATGAAGCTGGGTGAATCGAATCATATGCAAGTCGAGGTCGTGCCCAGCGGATCATTGGCTCTAGATATTGCTCTGGGAATCGGAGGCCTGCCCAAAGGCCGTATTATCGAAGTATACGGACCGGAATCCTCCGGCAAGACAACGGTTGCTCTGCATGCCATTGCGGAAGTTCAGAAGGTCGGAGGACAAGCCGCTTTTATTGACGCTGAGCATGCGCTGGACCCGAGGTATGCAAGCAAACTTGGCGTCAACATTGACGAGCTGCTGCTGTCTCAGCCGGATACCGGCGAACAGGCTCTGGAGATTGCGGAAGCGCTCGTCCGCAGCGGCGCCGTGGATATCATTGTGGTAGACTCCGTGGCGGCCTTGGTTCCCAAGGCTGAAATCGAAGGCGAGATGGGCGATTCCCATGTCGGCCTGCAGGCGCGGCTGATGTCCCAGGCTCTGCGCAAGCTTTCCGGCTCGATCAACAAATCCAAGACGATCGCTATCTTTATCAACCAGCTTCGCGAGAAGATCGGTGTTATGTTCGGCAATCCCGAGACGACCCCCGGCGGCCGCGCGTTAAAGTTCTACTCTACGGTCCGCCTTGATGTGCGCCGCGTAGAGAGCATTAAGATGGGCAATGATATCGTGGGCAACCGCACGCGGGTCAAGGTTGTAAAGAACAAGGTTGCGCCTCCCTTCAAACAGGCGGATATCGATATTATGTACGGTGAAGGCATTTCAAGAGAAGGCAGTCTCGTCGATATCGGCACGGAAATGGATATCATCAATAAGAGCGGAGCATGGTATTCCTATGAAGGCGAACGGCTGGGTCAAGGCCGCGAGAATGCGAAGCAGTTCCTGAAGGAACATCAGGATTTGGCGCTTGTCATCGAGAACAAGATTCGTGAAGCGAGCAGTCTCTCTACTATCGTCGCTGCTCCAACCGAAGCGGAGATCGAAGCAGAGAAA---GAGGAAGAACAGCAACTGCTCGAAATCGAATAA Paenibacillus_durus_754845762 TTGTCAGATCGTCGTGCAGCGCTTGAAATGGCGCTTCGTCAAATAGAGAAACAATTCGGTAAAGGTTCCGTCATGAAACTGGGTGAATCGACTCATATGCAAGTTGAGGTTGTGCCCAGCGGATCGCTGGCTTTAGATATTGCTCTGGGAATCGGCGGACTTCCTAAAGGCCGTATTATAGAAGTATACGGGCCGGAATCCTCCGGTAAGACAACGGTTGCCCTGCATGCGATTGCGGAGGTTCAGAAGGTCGGCGGACAAGCCGCTTTTATTGATGCGGAGCATGCGCTGGACCCGAGCTATGCAAGCAAACTGGGCGTTAACATTGATGAACTGCTGCTGTCCCAACCGGACACCGGCGAGCAGGCGCTGGAGATTGCAGAAGCGCTTGTCCGCAGCGGCGCGGTAGATATCATTGTGGTAGACTCCGTGGCGGCGCTGGTTCCCAAGGCTGAAATTGAAGGCGAGATGGGCGATTCCCATGTCGGCTTGCAAGCCCGGCTGATGTCCCAGGCCCTGCGTAAGCTGTCAGGCTCCATTAACAAATCCAAGACGATAGCTATCTTTATCAACCAGCTTCGCGAGAAGATCGGCGTTATGTTCGGTAATCCGGAGACGACTCCCGGCGGCCGCGCATTGAAATTCTACTCTACGGTTCGCCTTGATGTGCGCCGCGTAGAGAGTATTAAGATGGGCAATGATATAGTGGGTAACCGTACGCGGATCAAGGTTGTAAAGAACAAGGTGGCGCCTCCGTTCAAACAGGCGGATATCGATATTATGTACGGTGAGGGTATTTCCAGAGAAGGAAGTCTTGTCGATATTGGCACGGAAATGGATATTGTCAACAAGAGTGGCGCGTGGTACTCCTATGAAGGTGAACGGCTGGGTCAAGGCCGCGAGAATGCGAAGCAGTTCCTGAAGGAACATCAGAATTTGGCGCTTGTCATCGAGAACAAGATTCGTGAAGCGAGCAATCTCTCTACAATCGTTGCCGCTCCAACCGATGCGGAGATCGAAGCAGAGAAG---CAGGAAGAACAGGAACTGCTCGAAATCGAATAA Paenibacillus_durus_ATCC_35681_647247764 TTGTCAGATCGTCGTGCAGCGCTTGAAATGGCGCTTCGTCAAATAGAGAAACAATTCGGTAAAGGTTCCGTCATGAAACTGGGAGAATCGACTCATATGCAAGTTGAGATCGTACCCAGCGGATCGCTGGCTTTAGATATTGCCCTTGGGATTGGCGGACTTCCCAAAGGCCGGATTATAGAAGTATATGGACCGGAATCCTCCGGTAAGACAACAGTTGCCCTACATGCGATTGCGGAGGTTCAGAAGCTCGGAGGACAAGCCGCCTTCATTGATGCGGAGCATGCGCTGGACCCGAGCTATGCAAGCAAACTGGGCGTTAACATTGACGAACTGCTGCTGTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAGATTGCGGAAGCGCTTGTCCGCAGCGGCGCGGTAGATATTATTGTGGTAGACTCCGTGGCTGCGCTGGTTCCGAAAGCTGAAATCGAAGGCGAGATGGGCGATTCCCATGTCGGCTTGCAAGCACGGCTGATGTCCCAGGCCCTGCGTAAGCTGTCCGGCTCCATTAACAAATCGAAGACGATTGCTATCTTTATCAACCAGCTTCGTGAGAAGATCGGCGTTATGTTCGGTAATCCCGAGACGACTCCCGGCGGCCGCGCATTGAAATTCTACTCTACGGTTCGCCTTGATGTGCGCCGCGTAGAGAGTATTAAGATGGGCAATGATATCGTGGGTAACCGCACGCGAATCAAGGTTGTAAAGAACAAGGTGGCGCCTCCGTTCAAACAGGCGGATATCGATATTATGTACGGTGAAGGCATTTCCAGAGAAGGAAGTCTCGTCGATATTGGCACGGAAATGGATATCGTCAACAAGAGCGGCGCATGGTACTCCTATGAAGGTGAACGGCTGGGTCAAGGCCGCGAGAATGCGAAGCAGTTCCTGAAGGAACATCAGGATTTGGCGCTTGTCATTGAGAATAAGATTCGTGAAGCGAGCAATCTGTCTACAATCGTCGCCCCTCCAACGGAAGCGGAGATCGAAGCAGAGAAG---CAGGAAGAACAGGCACTGCTCGAAATCGAATAA Paenibacillus_zanthoxyli_JH29_647238754 TTGTCAGATCGTCGTGCAGCGCTTGAAATGGCGCTTCGTCAAATAGAGAAACAATTCGGTAAAGGTTCCGTTATGAAACTGGGAGAATCGACTCACATGCAAGTTGAGGTCGTACCCAGCGGATCGTTGGCTTTAGATATTGCCCTGGGGATTGGCGGACTTCCCAAAGGCCGCATTATAGAAGTATATGGACCGGAATCCTCCGGTAAGACAACGGTTGCCCTGCATGCGATTGCGGAGGTTCAGAAGGTCGGAGGACAAGCCGCCTTTATTGATGCGGAGCATGCGCTGGATCCGAGCTATGCAAGCAAACTGGGCGTTAATATTGACGAACTGCTGCTGTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAGATTGCGGAAGCGCTTGTCCGCAGCGGCGCGGTAGATATCATTGTGGTAGACTCCGTGGCGGCGCTGGTTCCGAAGGCTGAAATCGAAGGCGAGATGGGAGATTCCCATGTCGGCTTGCAAGCACGGCTGATGTCCCAGGCCCTGCGTAAGCTGTCCGGCTCCATTAACAAATCGAAGACGATCGCTATCTTTATCAACCAGCTTCGCGAGAAGATCGGCGTTATGTTCGGTAATCCCGAGACGACTCCCGGCGGCCGCGCATTGAAATTCTACTCTACGGTTCGCCTTGATGTGCGCCGCGTAGAGAGTATTAAGATGGGCAATGATATCGTGGGTAACCGCACGCGAATCAAGGTTGTAAAGAACAAGGTGGCACCTCCGTTCAAACAGGCGGATATCGATATTATGTACGGTGAAGGCATTTCCAGAGAAGGAAGTCTCGTCGATATTGGCACGGAAATGGATATCGTCAACAAGAGCGGCGCATGGTACTCCTATGAAGGTGAACGGCTGGGTCAAGGCCGCGAGAATGCGAAGCAGTTCCTGAAGGAACATCAGGATTTGGCGCTTGTCATTGAGAATAAGATTCGTGAAGCGAGCAATCTTTCTACAATCGTCGCCGCTCCAACGGAAGCGGAGATCGAAGCAGAGAAG---CAGGAAGAACAGGCACTGCTCGAAATCGAATAA Paenibacillus_wynnii_738763075 TTGTCAGATCGTCGTGCAGCGCTGGAGATGGCGCTTCGTCAAATAGAGAAACAATATGGTAAAGGTTCTATCATGAAACTGGGAGAATCCGCTCATATGCAAGTGGAAGTTGTACCTAGTGGATCTATCGCATTAGATATAGCATTAGGCATTGGCGGACTCCCAAAAGGTCGTATTATTGAAGTGTATGGCCCGGAATCTTCCGGTAAAACAACGGTTGCTCTTCATGCGATTGCAGAAGTGCAAAAGGCTGGCGGACAAGCTGCATTTATTGATGCCGAGCATGCATTAGATCCTAAATATGCAAATGCCCTAGGCGTAAATATTGATGAGCTGCTGCTTTCACAGCCTGATACCGGTGAGCAAGCGCTTGAAATTGCAGAAGCACTCGTTCGCAGTGGTGCTGTAGACATTATTGTTATCGACTCTGTGGCAGCGTTGGTTCCGAAAGCGGAAATTGAAGGTGATATGGGAGATTCCCACGTGGGTCTGCAGGCACGTTTGATGTCACAGGCTTTGCGTAAATTATCTGGTGCGATTAGCAAATCCAATACCATTGCTATCTTCATTAACCAGCTTCGTGAGAAGATTGGTGTGATGTTTGGTAACCCTGAGACTACTCCGGGTGGACGGGCACTGAAATTCTACTCCTCAGTACGCTTGGATGTGCGTCGTGTAGAGAGTATTAAGATGGGTAACGATGTGGTGGGTAACCGCACCAAGATAAAAGTTGTTAAGAACAAGGTAGCTCCTCCGTTTAAGCAGGCAGATGTAGATATCATGTACGGTGAAGGGATTTCCAAAGAAGGAAGTCTTGTTGATATTGGTACCGAGATGGATATTGTGAACAAGAGTGGTGCATGGTATTCCTATGAAGGCGAGCGTCTGGGTCAAGGCCGTGAGAACGCGAAGCTGTTCCTGAAAGAACATAAGGATATTGCCCTTGTAATTGAGAACAAAATTCGTGCAGCAAGTAATCTAACCACCCTAGTAGCTCCACCAAGTGAAAAAGAAGTGGAAGCGGAGCAA---CAAGAAGAAAAAGCATTACTTGAAATTGAATAA Paenibacillus_odorifer_738797248 TTGTCAGATCGTCGTGCAGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTTGGTAAAGGTTCGGTAATGAAACTGGGAGAATCCACGCATATGCAAGTGGAAGTTGTACCTAGCGGATCTTTGGCACTTGATATTGCGTTAGGTATAGGCGGACTTCCAAAGGGACGTATTATTGAAGTATATGGACCGGAATCTTCAGGTAAAACAACAGTTGCTCTTCATGCTATTGCAGAAGTGCAAAGACAAGGCGGACAAGCTGCTTTTATCGATGCCGAGCATGCGCTTGATCCGAAATATGCACGTAACTTGGGCGTAAATATCGATGAATTGCTGCTTTCTCAGCCAGATACGGGTGAACAAGCGCTGGAAATCGCCGAAGCACTTGTTCGTAGTGGAGCCGTTGACATTATTGTCGTTGACTCCGTTGCTGCTTTGGTACCTAAGGCTGAAATTGAAGGCGATATGGGTGATTCCCACGTCGGACTGCAAGCTCGCTTGATGTCTCAAGCACTTCGTAAGCTTTCTGGTGCCATTAGCAAATCGAATACGATTGCTATCTTTATCAACCAGCTTCGTGAGAAGATCGGTGTTATGTTCGGTAACCCTGAGACAACTCCGGGTGGTCGTGCATTGAAATTCTACTCCTCTGTACGTTTAGATGTACGTCGCGTAGAGAGCATCAAGATGGGGAACGATGTGGTTGGTAACCGTACTAAGATCAAGATTGTGAAGAATAAAGTAGCCCCTCCATTTAAACAGGCTGATGTTGATATCATGTATGGTGAAGGGATTTCCAAAGAGGGAAGTCTTGTAGATATCGGTACTGAAATGGATATCGTGAATAAGAGTGGTGCATGGTATTCCTACGAAGGCGAGCGTCTCGGCCAAGGTCGTGAGAATGCTAAGCAGTTTTTGAAGGAACATCAGGATATTGCCCTTATTATTGAGAATAAGATCCGTGAAGCAAGTAATTTATCCACTATTGTTGCTGCGCCGAATAATGATGAGATTGTTGCAGAGCAAGAGGAAGAAGAAAAATTGCTCCTCGAAATCGAATAG Paenibacillus_sp._HW567_518752498 TTGTCAGATCGTCGTGCTGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTTGGTAAAGGTTCCATCATGAAATTGGGAGAATCCAATCACATGAAAGTGGAGGTCGTACCTAGCGGATCTTTGGCACTTGATATCGCACTGGGTATTGGCGGACTTCCTAAAGGACGTATTATTGAAGTATATGGGCCGGAGTCTTCCGGTAAGACGACCGTTGCCCTGCATGCTATTGCAGAGGTACAGAAGGTAGGCGGACAAGCTGCCTTTATTGATGCCGAACACGCGCTCGACCCTAAATACGCAAATGCGCTCGGCGTAAACATTGATGAACTGCTGTTGTCCCAGCCGGACACCGGTGAACAAGCACTGGAAATTGCCGAAGCGCTGGTCCGCAGTGGCGCGGTGGATATCATTGTTGTTGACTCAGTGGCAGCATTGGTACCGAAAGCGGAAATTGAAGGCGACATGGGGGATTCCCACGTAGGTTTGCAGGCACGGTTGATGTCCCAGGCTTTGCGGAAGCTGTCGGGGGCGATCAACAAATCCAACACCATTGCCATCTTCATCAACCAGCTCCGCGAGAAAATCGGCGTTATGTTCGGTAACCCCGAAACCACGCCTGGCGGCCGGGCCTTGAAGTTCTACTCTTCCGTTCGTTTGGATGTGCGGCGGGTTGAGAGCATCAAGATGGGCAATGATGTTGTGGGTAACCGTACGAAGATCAAGGTTGTGAAGAACAAGGTAGCCCCTCCGTTCAAGCAAGCGGATGTTGATATTATGTATGGTGAAGGCATTTCCCGTGAAGGAAGCCTTGTGGACATCGGTACGGATATGGACATCGTTAATAAGAGCGGTGCTTGGTATTCCTTCGAAGGTGAACGTCTTGGTCAAGGCCGCGAGAACTCCAAGCAGTTCCTCAAGGAACATCAGGATATTGCCCTGCTGATTGAGAACAAGATTCGTGAAGCGAGCAATTTGACAACGCTGGTGGCTGTACCGACTGAGGCTGAAGCAGCGGCAGAGCAAGAGGAAGAAGAAAATCTGCTGCTTGAAATCGAATAA Paenibacillus_borealis_754773957 TTGTCAGATCGTCGTGCAGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTCGGTAAAGGTTCGATCATGAAACTGGGAGAATCCACTCACATGAAAGTGGAAGTTGTACCTAGCGGATCTTTGGCACTTGATATTGCACTAGGTATTGGCGGACTTCCCAAAGGACGCATTATTGAAGTATACGGACCGGAATCATCCGGTAAGACGACAGTTGCTCTTCATGCTATCGCAGAAGTACAGAAGCTTGGCGGACAAGCTGCTTTCATCGATGCCGAGCATGCGCTTGACCCTAAATATGCCAATGCGCTTGGCGTTAACATTGATGAATTGCTGCTATCCCAGCCGGATACGGGCGAACAGGCACTGGAAATTGCTGAAGCGCTCGTTCGCAGTGGAGCTGTAGACATCATCGTTGTGGACTCCGTTGCCGCATTGGTGCCGAAGGCCGAAATTGAAGGCGACATGGGAGATTCCCACGTAGGTTTGCAGGCCCGTCTGATGTCCCAGGCATTGCGTAAGCTGTCTGGTGCCATTAACAAATCCAACACCATTGCAATCTTCATTAACCAGCTTCGTGAGAAGATCGGTGTTATGTTCGGTAACCCTGAGACCACTCCGGGTGGACGCGCTCTGAAATTCTATTCCTCCGTTCGTTTGGATGTACGCCGGGTAGAGAGTATCAAGATGGGTAACGATGTAGTGGGTAACCGTACTAAGATCAAGGTCGTGAAGAACAAGGTAGCGCCTCCGTTTAAGCAAGCGGATGTGGATATTATGTACGGTGAAGGGATTTCCAGAGAGGGAAGCCTTGTGGATATCGGTACTGAGATGGATATCGTCAACAAGAGCGGTGCCTGGTATTCTTACGAGGGTGAGCGTCTTGGCCAAGGCCGTGAGAACTCCAAGCAGTTCCTGAAGGAACATCAGGATATTGCCCTGCTGATCGAGAATAAGATCCGCGAAGCAAGTAACTTATCTACTCTGGTAGCTGCACCAACGGAAGCTGATGTTGTTGCAGAGCAAGAGGAAGAAGAGAAATTACTGCTTGAGATTGAATAA Paenibacillus_sp._CAS34_AMQ84_24835 TTGTCAGATCGTCGTGCTGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTTGGTAAAGGTTCGGTTATGAAATTGGGAGAATCCAACCACATGAAGGTGGAAGTGGTACCTAGCGGATCTTTGGCACTTGATATTGCATTAGGTATTGGCGGACTTCCCAAAGGACGTATTATTGAAGTATATGGACCGGAATCTTCCGGTAAGACAACAGTTGCCTTGCATGCGATTGCAGAAGTGCAAAAGGTCGGCGGACAAGCTGCATTTATCGATGCCGAGCATGCGCTTGATCCTAAATACGCTAATGCGCTTGGCGTTAACATCGATGAGCTGCTTCTGTCCCAGCCAGACACGGGCGAGCAGGCGCTGGAAATCGCTGAAGCACTTGTCCGCAGCGGTGCGGTCGACATTATCGTAGTGGACTCTGTGGCAGCTTTGGTTCCGAAGGCCGAAATCGAAGGCGATATGGGCGATTCCCATGTAGGCTTGCAGGCCCGCCTGATGTCTCAGGCTTTGCGGAAGCTGTCCGGGGCAATCAACAAGTCGAATACTATTGCGATCTTCATCAACCAGCTTCGTGAGAAGATTGGTGTAATGTTCGGTAACCCGGAAACAACTCCCGGCGGCCGGGCATTGAAATTCTACTCTTCCGTGCGTCTGGATGTGCGCCGCGTTGAGAGCATTAAGATGGGCAACGATGTGGTGGGCAACCGCACAAAGATCAAGGTTGTGAAGAACAAGGTAGCTCCTCCATTCAAGCAGGCTGATGTTGATATCATGTACGGTGAAGGGATCTCCAAGGAGGGAAGCCTCGTGGATATCGGCACTGAAATGGACATCGTCAACAAGAGCGGTGCCTGGTACTCTTATGAAGGTGAGCGTCTTGGACAAGGCCGTGAAAATTCCAAGCAGTTCCTGAAGGAACATCAGGATATTGCCCTGTTGATTGAGAATAAGATTCGTGAAGCAAGCAATCTGTCAACGATTGTGGCCGCGCCAACCGAATCTGAGATAGCAGCGGAGCAAGAGGAAGAAGAGAATTTGCTGCTGGAAATCGAATAA Paenibacillus_sp._CAR114_AMQ83_02105 TTGTCAGATCGTCGTGCTGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTCGGTAAAGGTTCGGTTATGAAATTGGGAGAATCCAACCACATGAAGGTGGAAGTGGTACCTAGCGGATCTTTGGCACTTGATATTGCATTAGGTATTGGCGGACTTCCCAAAGGACGTATTATTGAAGTATATGGACCGGAATCTTCCGGTAAGACAACAGTTGCCTTGCATGCGATTGCAGAAGTGCAAAAGGTCGGCGGACAAGCTGCATTTATCGATGCCGAGCATGCGCTTGATCCTAAATACGCTAATGCGCTTGGAGTTAACATCGATGAGCTGCTGCTGTCCCAGCCAGACACGGGCGAGCAGGCGCTGGAAATCGCTGAAGCACTTGTCCGCAGCGGTGCGGTCGACATTATCGTAGTGGACTCTGTGGCAGCATTGGTTCCGAAGGCCGAAATCGAAGGTGATATGGGCGATTCCCATGTAGGCTTGCAGGCCCGCCTGATGTCTCAGGCTTTGCGGAAGCTGTCCGGGGCAATCAACAAGTCGAACACTATTGCGATCTTCATCAACCAGCTTCGTGAGAAGATTGGTGTAATGTTCGGTAACCCGGAAACAACTCCCGGCGGCCGGGCATTGAAATTCTACTCTTCCGTGCGTCTGGATGTGCGCCGCGTTGAGAGCATTAAGATGGGGAACGATGTGGTGGGCAACCGTACAAAGATCAAGGTTGTGAAGAACAAGGTAGCCCCTCCATTCAAGCAGGCTGATGTTGATATCATGTATGGTGAAGGGATCTCCAAGGAGGGAAGCCTCGTGGACATCGGCACTGAAATGGACATCGTCAACAAGAGCGGTGCCTGGTACTCTTATGAAGGTGAGCGTCTTGGACAAGGCCGTGAGAATTCCAAGCAGTTCCTGAAGGAACATCAGGATATTGCCCTGTTGATTGAGAATAAGATTCGTGAAGCAAGCAATCTGTCAACGATTGTGGCTGCGCCATCCGAATCTGAGATCGCAGCGGAGCAAGAGGAAGAAGAGAATTTGCTGCTTGAAATCGAATAA Paenibacillus_riograndensis_SBR5_PRIO_4000 TTGTCAGATCGTCGTGCAGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTCGGTAAAGGTTCGGTTATGAAATTGGGAGAATCCAACCACATGAAGGTGGAAGTGGTACCTAGCGGATCTTTGGCACTTGATATTGCATTAGGTATTGGCGGACTTCCCAAAGGACGTATTATTGAAGTATATGGACCGGAATCTTCCGGTAAGACAACAGTTGCCTTGCATGCGATTGCAGAAGTGCAAAAGGTCGGCGGACAAGCTGCATTTATCGATGCCGAGCATGCGCTTGATCCTAAATACGCTAATGCGCTTGGAGTTAACATCGATGAGTTGCTGCTGTCCCAGCCAGACACGGGCGAGCAGGCGCTGGAAATCGCTGAAGCACTTGTCCGCAGCGGTGCTGTCGACATTATCGTAGTAGACTCTGTGGCAGCATTGGTTCCGAAGGCCGAAATCGAAGGCGATATGGGCGATTCCCATGTAGGCTTGCAGGCCCGCCTGATGTCTCAGGCTTTGCGGAAGCTGTCCGGGGCAATCAACAAGTCGAATACTATTGCGATCTTCATCAACCAGCTTCGTGAGAAGATTGGTGTAATGTTCGGTAACCCGGAAACAACTCCCGGCGGCCGGGCATTGAAATTCTACTCTTCCGTGCGTCTGGATGTGCGCCGCGTTGAGAGCATTAAGATGGGCAACGATGTGGTAGGCAACCGCACTAAGATCAAGGTTGTGAAGAACAAGGTAGCTCCTCCATTCAAGCAGGCTGATGTTGATATCATGTATGGTGAAGGGATCTCCAAGGAGGGAAGCCTCGTGGACATCGGCACTGAAATGGACATCGTCAACAAGAGCGGTGCCTGGTACTCTTATGAAGGTGAGCGTCTTGGACAAGGCCGTGAGAATTCCAAGCAGTTCCTGAAGGAACATCAGGATATTGCCCTGTTGATTGAGAATAAGATTCGTGAAGCAAGCAATCTGTCAACGATTGTGGCTGCGCCAACCGAATCTGAGATAGCAGCGGAGCAAGAGGAAGAAGAAAATTTGCTGCTTGAAATCGAATAA Paenibacillus_sonchi_X19_5_748292936 TTGTCAGATCGTCGTGCAGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTCGGTAAAGGTTCGGTTATGAAATTGGGAGAATCCAACCACATGAAGGTGGAAGTGGTACCTAGCGGATCTTTGGCACTTGATATTGCACTAGGTATTGGCGGACTTCCCAAAGGACGTATTATTGAAGTATATGGACCGGAATCTTCCGGTAAGACAACAGTTGCCTTGCATGCGATTGCAGAAGTGCAAAAGGTCGGCGGACAAGCTGCATTTATCGATGCCGAGCATGCGCTTGATCCTAAATACGCTAATGCACTTGGAGTTAACATCGATGAGCTGCTGCTGTCCCAGCCAGACACGGGCGAGCAGGCGCTGGAAATCGCTGAAGCACTTGTCCGCAGCGGTGCGGTTGACATTATCGTAGTAGACTCTGTGGCAGCATTGGTTCCGAAGGCCGAAATCGAAGGCGATATGGGCGATTCCCATGTAGGCTTGCAGGCCCGCCTGATGTCTCAGGCTTTGCGGAAGCTGTCCGGGGCAATCAACAAGTCGAATACTATTGCGATCTTCATTAACCAGCTTCGTGAGAAGATTGGTGTAATGTTCGGTAATCCGGAAACAACTCCCGGCGGCCGGGCATTGAAATTCTACTCTTCCGTACGTCTGGATGTGCGCCGCGTTGAGAGCATTAAGATGGGCAACGATGTGGTGGGCAACCGCACTAAGATCAAGGTTGTAAAGAACAAGGTAGCTCCTCCTTTCAAGCAGGCTGATGTTGATATTATGTATGGTGAAGGGATCTCCAAGGAGGGAAGCCTCGTGGACATCGGCACTGAAATGGACATCGTCAACAAGAGCGGTGCCTGGTACTCTTATGAAGGTGAGCGTCTTGGACAAGGCCGTGAGAATTCCAAGCAGTTCCTGAAGGAACATCAGGATATTGCCCTGTTGATTGAGAATAAGATTCGTGAAGCAAGCAATCTGTCAACGATTGTGGCTGCGCCAACCGAATCTGAGATAGCAGCGGAGCAAGAGGAAGAAGAGAATTTGCTGCTTGAAATCGAATAA Paenibacillus_graminis_686558660 TTGTCAGATCGTCGTGCGGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTCGGTAAAGGTTCGATCATGAAATTGGGAGAATCCAACCACATGAAGGTGGAAGTGGTACCTAGCGGATCTTTGGCACTTGATATTGCACTAGGTATAGGCGGACTTCCCAAAGGACGTATTATTGAAGTATATGGACCGGAATCTTCCGGTAAGACAACAGTTGCCTTGCATGCGATTGCAGAAGTGCAAAAGGTTGGCGGACAAGCTGCATTTATCGATGCTGAGCATGCGCTTGATCCTAAATACGCTAACGCGCTTGGCGTTAACATCGATGAGCTGCTGCTGTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCGCTGAAGCACTTGTCCGCAGTGGTGCGGTCGACATCATCGTAGTGGACTCCGTGGCAGCATTGGTTCCGAAAGCGGAAATCGAAGGCGACATGGGTGATTCCCATGTAGGCTTGCAGGCCCGCCTGATGTCTCAGGCTTTGCGGAAGCTGTCCGGGGCAATCAACAAGTCGAATACCATTGCTATCTTCATCAACCAGCTTCGTGAGAAGATTGGTGTAATGTTCGGTAACCCGGAAACAACACCCGGCGGCCGGGCATTGAAATTCTACTCTTCCGTGCGTCTGGATGTGCGCCGCGTTGAGAGCATTAAGATGGGCAACGATGTGGTGGGCAACCGCACCAAGATCAAGGTTGTGAAGAACAAGGTAGCTCCTCCGTTCAAGCAGGCTGATGTTGATATCATGTATGGTGAAGGAATCTCCAAAGAAGGAAGCCTCGTGGACATTGGTACTGAAATGGACATCGTCAACAAGAGCGGTGCCTGGTACTCTTACGAAGGTGAGCGTCTTGGACAAGGCCGTGAGAATTCTAAGCAGTTCCTGAAGGAACACCAGGATATTGCCCTGTTGATTGAGAATAAGATTCGTGAAGCAAGCAATCTGTCAACAATTGTGGCTGCGCCAACTGAATCTGATGTGGCAGCGGAGCAAGAGGAAGAAGAAAAGCTGCTGCTTGAAATCGAATAA Paenibacillus_jilunlii_AML91_12595 TTGTCAGATCGTCGTGCGGCGCTTGATATGGCGCTTCGTCAAATAGAAAAACAATTCGGTAAAGGTTCGATCATGAAATTGGGAGAATCCAACCACATGAAGGTGGAAGTGGTACCTAGCGGATCTTTGGCACTTGATATTGCACTAGGTATAGGCGGACTTCCCAAAGGACGTATTATTGAAGTATATGGACCGGAATCTTCCGGTAAGACCACAGTTGCCTTGCATGCGATTGCAGAAGTGCAAAAGGTCGGCGGACAAGCTGCCTTTATCGATGCCGAGCATGCGCTTGATCCTAAATACGCTAACGCGCTTGGCGTTAACATCGATGAGCTGCTGCTGTCCCAGCCGGACACGGGCGAGCAGGCGCTGGAAATCGCTGAAGCACTTGTCCGCAGTGGTGCGGTCGACATTATCGTAGTGGACTCCGTGGCAGCATTGGTTCCGAAGGCAGAAATCGAAGGCGACATGGGCGATTCCCATGTAGGCTTGCAGGCCCGCCTGATGTCTCAGGCTTTGCGGAAGCTGTCGGGGGCAATCAACAAGTCGAATACTATTGCTATCTTCATCAACCAGCTTCGTGAGAAGATTGGTGTAATGTTCGGTAACCCGGAAACAACACCCGGCGGCCGGGCCTTGAAATTCTACTCTTCCGTGCGTCTGGATGTACGCCGCGTTGAGAGCATTAAGATGGGTAACGATGTGGTGGGTAACCGCACAAAGATCAAGGTCGTGAAGAACAAGGTAGCTCCTCCATTCAAGCAGGCTGATGTTGATATCATGTATGGTGAAGGGATCTCCAAAGAAGGAAGCCTTGTGGACATCGGTACTGAAATGGACATCGTCAACAAGAGCGGTGCCTGGTACTCTTATGAGGGTGAGCGTCTTGGACAAGGCCGTGAGAATTCCAAGCAGTTCCTGAAGGAACATCAGGATATTGCCCTGTTGATTGAGAATAAGATTCGTGAAGCAAGCAATCTGTCAACGATTGTGGCTGCGCCAACTGAATCTGAGGTGGCGGCTGAGCAAGAGGAAGAAGAAAAGCTGCTGCTTGAAATCGAATAA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1065; END; BEGIN NOTES; TAXABITS TAXA = Taxa NAME = newlyAddedTaxon on = 1 - 17; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1065; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1065; END; BEGIN TREES; Title 'Trees from "recA_mega_ed.nex"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Paenibacillus_polymyxa_ATCC_842_644728542, [1] 2 Paenibacillus_stellifer_740911357, [2] 3 Paenibacillus_sabinae_T27_644577332, [3] 4 Paenibacillus_forsythiae_T98_647253425, [4] 5 Paenibacillus_durus_754845762, [5] 6 Paenibacillus_durus_ATCC_35681_647247764, [6] 7 Paenibacillus_zanthoxyli_JH29_647238754, [7] 8 Paenibacillus_wynnii_738763075, [8] 9 Paenibacillus_odorifer_738797248, [9] 10 Paenibacillus_sp._HW567_518752498, [10] 11 Paenibacillus_borealis_754773957, [11] 12 Paenibacillus_sp._CAS34_AMQ84_24835, [12] 13 Paenibacillus_sp._CAR114_AMQ83_02105, [13] 14 Paenibacillus_riograndensis_SBR5_PRIO_4000, [14] 15 Paenibacillus_sonchi_X19_5_748292936, [15] 16 Paenibacillus_graminis_686558660, [16] 17 Paenibacillus_jilunlii_AML91_12595; TREE STATE_1 = (1:1.09390067,(2:0.24181747,(((((((((15:0.01787016,14:0.00777768)0.9060:0.00591972,13:0.01184863)0.7600:0.00201027,12:0.01588267)1.0000:0.04581582,16:0.03420137)0.4320:0.01257593,17:0.01433724)0.9950:0.16128641,10:0.25190955)0.9740:0.11449022,11:0.1501261)0.6890:0.0633907,(9:0.31971011,8:0.40511029)0.4720:0.06449973)1.0000:0.39066504,(3:0.26416722,(4:0.13708202,(5:0.05416398,(7:0.01308236,6:0.03093276)0.9600:0.0333501)0.0490:0.03881796)0.4770:0.07950157)0.9420:0.14208241)0.4270:0.15044479)0.0000:0.08318081); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1482514227186; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3816263936933593445; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5837060976487069529; mqVersion 304; checksumv 0 3 1681573077 null getNumChars 1065 numChars 1065 getNumTaxa 17 numTaxa 17 short true bits 15 states 15 sumSquaresStatesOnly 372273.0 sumSquares 372273.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 452; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 710 466; setLocation 51 24; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5837060976487069529 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 258 394; setLocation 51 24; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;