#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=66; TAXLABELS Porphyra_purpurea_NC_000925 Pyropia_haitanensis_NC_021189 Pyropia_perforata_NC_024050 Gracilaria_tenuistipitata_var_liui_NC_006137 Gracilaria_salicornia_NC_023785 Chondrus_crispus_NC_020795 Grateloupia_taiwanensis_NC_021618 Vertebrata_lanosa_NC_026523 Calliarthron_tuberculosum_NC_021075 Pyropia_yezoensis_NC_007932 Guillardia_theta_NC_000926 Rhodomonas_salina_NC_009573 Cryptomonas_paramecium_NC_013703 Galdieria_sulphuraria_NC_024665 Cyanidium_caldarium_NC_001840 Cyanidioschyzon_merolae_strain_10D_NC_004799 Toxoplasma_gondii_RH_NC_001799 Eimeria_tenella_strain_Penn_State_NC_004823 Leucocytozoon_caulleryi_NC_022667 Plasmodium_chabaudi_chabaudi_NC_023293 Theileria_parva_strain_Muguga_NC_007758 Emiliania_huxleyi_NC_007288 Phaeocystis_antarctica_NC_016703 Phaeocystis_globosa_NC_021637 Lepidodinium_chlorophorum_NC_027093 Pavlova_lutheri_NC_020371 Choreocolax_polysiphoniae_NC_026522 Aureococcus_anophagefferens_NC_012898 Aureoumbra_lagunensis_NC_012903 Babesia_bovis_T2Bo_NC_011395 Trachydiscus_minutus_NC_026851 Nannochloropsis_granulata_NC_022259 Nannochloropsis_oculata_NC_022260 Nannochloropsis_oceanica_NC_022263 Nannochloropsis_salina_NC_022261 Nannochloropsis_limnetica_NC_022262 Nannochloropsis_gaditana_NC_020014 Vaucheria_litorea_NC_011600 Heterosigma_akashiwo_NC_010772 Odontella_sinensis_NC_001713 Phaeodactylum_tricornutum_NC_008588 Didymosphenia_geminata_NC_024083 Eunotia_naegelii_NC_024928 Fistulifera_solaris_NC_015403 Kryptoperidinium_foliaceum_NC_014267 Durinskia_baltica_NC_014287 Ulnaria_acus_NC_016731 Asterionella_formosa_NC_024079 Chaetoceros_simplex_NC_025310 Cerataulina_daemon_NC_025313 Coscinodiscus_radiatus_NC_024081 Lithodesmium_undulatum_NC_024085 Cylindrotheca_closterium_NC_024082 Asterionellopsis_glacialis_NC_024080 Thalassiosira_pseudonana_NC_008589 Roundia_cardiophora_NC_025312 Thalassiosira_weissflogii_NC_025314 Thalassiosira_oceanica_CCMP1005_NC_014808 Rhizosolenia_imbricata_NC_025311 Leptocylindrus_danicus_NC_024084 Ectocarpus_siliculosus_NC_013498 Fucus_vesiculosus_NC_016735 Saccharina_japonica_NC_018523 Chromerida_sp._RM11_NC_014345 Chromera_velia_NC_014340 Porphyridium_purpureum_NC_023133 ; END; BEGIN CHARACTERS; TITLE Fig._6; DIMENSIONS NCHAR=131; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1"; MATRIX Porphyra_purpurea_NC_000925 11111111111111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pyropia_haitanensis_NC_021189 11111111111110100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pyropia_perforata_NC_024050 11111111111100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Gracilaria_tenuistipitata_var_liui_NC_006137 11111111111000001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Gracilaria_salicornia_NC_023785 11111111111000001101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Chondrus_crispus_NC_020795 11111111111000001000111100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Grateloupia_taiwanensis_NC_021618 11111111111000001000111010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Vertebrata_lanosa_NC_026523 11111111111000001000110001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Calliarthron_tuberculosum_NC_021075 11111111111000001000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pyropia_yezoensis_NC_007932 11111111110000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Guillardia_theta_NC_000926 11111111100000000000000000001111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Rhodomonas_salina_NC_009573 11111111100000000000000000001110100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Cryptomonas_paramecium_NC_013703 11111111100000000000000000001100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Galdieria_sulphuraria_NC_024665 11111111100000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Cyanidium_caldarium_NC_001840 11111111000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Cyanidioschyzon_merolae_strain_10D_NC_004799 11111111000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Toxoplasma_gondii_RH_NC_001799 11111110000000000000000000000000000000111111111111000000000000000000000000000000000000000000000000000000000000000000000000000000000 Eimeria_tenella_strain_Penn_State_NC_004823 11111110000000000000000000000000000000111111111110100000000000000000000000000000000000000000000000000000000000000000000000000000000 Leucocytozoon_caulleryi_NC_022667 11111110000000000000000000000000000000111111111100011000000000000000000000000000000000000000000000000000000000000000000000000000000 Plasmodium_chabaudi_chabaudi_NC_023293 11111110000000000000000000000000000000111111111100010100000000000000000000000000000000000000000000000000000000000000000000000000000 Theileria_parva_strain_Muguga_NC_007758 11111110000000000000000000000000000000111111111000000010000000000000000000000000000000000000000000000000000000000000000000000000000 Emiliania_huxleyi_NC_007288 11111110000000000000000000000000000000111111110000000001000000000000000000000000000000000000000000000000000000000000000000000000000 Phaeocystis_antarctica_NC_016703 11111110000000000000000000000000000000111111100000000000110000000000000000000000000000000000000000000000000000000000000000000000000 Phaeocystis_globosa_NC_021637 11111110000000000000000000000000000000111111100000000000101000000000000000000000000000000000000000000000000000000000000000000000000 Lepidodinium_chlorophorum_NC_027093 11111110000000000000000000000000000000111111000000000000000100000000000000000000000000000000000000000000000000000000000000000000000 Pavlova_lutheri_NC_020371 11111110000000000000000000000000000000111110000000000000000010000000000000000000000000000000000000000000000000000000000000000000000 Choreocolax_polysiphoniae_NC_026522 11111110000000000000000000000000000000111100000000000000000001000000000000000000000000000000000000000000000000000000000000000000000 Aureococcus_anophagefferens_NC_012898 11111110000000000000000000000000000000111000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000 Aureoumbra_lagunensis_NC_012903 11111110000000000000000000000000000000111000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000 Babesia_bovis_T2Bo_NC_011395 11111110000000000000000000000000000000110000000000000000000000000111100000000000000000000000000000000000000000000000000000000000000 Trachydiscus_minutus_NC_026851 11111110000000000000000000000000000000110000000000000000000000000111010000000000000000000000000000000000000000000000000000000000000 Nannochloropsis_granulata_NC_022259 11111110000000000000000000000000000000110000000000000000000000000110001111000000000000000000000000000000000000000000000000000000000 Nannochloropsis_oculata_NC_022260 11111110000000000000000000000000000000110000000000000000000000000110001110100000000000000000000000000000000000000000000000000000000 Nannochloropsis_oceanica_NC_022263 11111110000000000000000000000000000000110000000000000000000000000110001100010000000000000000000000000000000000000000000000000000000 Nannochloropsis_salina_NC_022261 11111110000000000000000000000000000000110000000000000000000000000110001000001100000000000000000000000000000000000000000000000000000 Nannochloropsis_limnetica_NC_022262 11111110000000000000000000000000000000110000000000000000000000000110001000001010000000000000000000000000000000000000000000000000000 Nannochloropsis_gaditana_NC_020014 11111110000000000000000000000000000000110000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000 Vaucheria_litorea_NC_011600 11111110000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000 Heterosigma_akashiwo_NC_010772 11111100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000 Odontella_sinensis_NC_001713 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111110000000000000000000000000000000000000000000 Phaeodactylum_tricornutum_NC_008588 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101111111110000000000000000000000000000000000 Didymosphenia_geminata_NC_024083 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101111111101000000000000000000000000000000000 Eunotia_naegelii_NC_024928 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101111111000100000000000000000000000000000000 Fistulifera_solaris_NC_015403 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101111110000010000000000000000000000000000000 Kryptoperidinium_foliaceum_NC_014267 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101111100000001100000000000000000000000000000 Durinskia_baltica_NC_014287 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101111100000001010000000000000000000000000000 Ulnaria_acus_NC_016731 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101111000000000001100000000000000000000000000 Asterionella_formosa_NC_024079 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101111000000000001010000000000000000000000000 Chaetoceros_simplex_NC_025310 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101110000000000000001100000000000000000000000 Cerataulina_daemon_NC_025313 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101110000000000000001010000000000000000000000 Coscinodiscus_radiatus_NC_024081 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101100000000000000000001100000000000000000000 Lithodesmium_undulatum_NC_024085 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101100000000000000000001010000000000000000000 Cylindrotheca_closterium_NC_024082 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111101000000000000000000000001000000000000000000 Asterionellopsis_glacialis_NC_024080 11111000000000000000000000000000000000000000000000000000000000000000000000000000001111000000000000000000000000000100000000000000000 Thalassiosira_pseudonana_NC_008589 11111000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000000000000000000000011100000000000000 Roundia_cardiophora_NC_025312 11111000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000000000000000000000011011000000000000 Thalassiosira_weissflogii_NC_025314 11111000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000000000000000000000011010100000000000 Thalassiosira_oceanica_CCMP1005_NC_014808 11111000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000000000000000000000010000010000000000 Rhizosolenia_imbricata_NC_025311 11111000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000001000000000 Leptocylindrus_danicus_NC_024084 11111000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000 Ectocarpus_siliculosus_NC_013498 11110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000 Fucus_vesiculosus_NC_016735 11110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010110000 Saccharina_japonica_NC_018523 11110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000 Chromerida_sp._RM11_NC_014345 11100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100 Chromera_velia_NC_014340 11000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010 Porphyridium_purpureum_NC_023133 10000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001 ; END; BEGIN TREES; Title Fig._6; LINK Taxa = Taxa; TRANSLATE [0] 1 Porphyra_purpurea_NC_000925, [1] 2 Pyropia_haitanensis_NC_021189, [2] 3 Pyropia_perforata_NC_024050, [3] 4 Gracilaria_tenuistipitata_var_liui_NC_006137, [4] 5 Gracilaria_salicornia_NC_023785, [5] 6 Chondrus_crispus_NC_020795, [6] 7 Grateloupia_taiwanensis_NC_021618, [7] 8 Vertebrata_lanosa_NC_026523, [8] 9 Calliarthron_tuberculosum_NC_021075, [9] 10 Pyropia_yezoensis_NC_007932, [10] 11 Guillardia_theta_NC_000926, [11] 12 Rhodomonas_salina_NC_009573, [12] 13 Cryptomonas_paramecium_NC_013703, [13] 14 Galdieria_sulphuraria_NC_024665, [14] 15 Cyanidium_caldarium_NC_001840, [15] 16 Cyanidioschyzon_merolae_strain_10D_NC_004799, [16] 17 Toxoplasma_gondii_RH_NC_001799, [17] 18 Eimeria_tenella_strain_Penn_State_NC_004823, [18] 19 Leucocytozoon_caulleryi_NC_022667, [19] 20 Plasmodium_chabaudi_chabaudi_NC_023293, [20] 21 Theileria_parva_strain_Muguga_NC_007758, [21] 22 Emiliania_huxleyi_NC_007288, [22] 23 Phaeocystis_antarctica_NC_016703, [23] 24 Phaeocystis_globosa_NC_021637, [24] 25 Lepidodinium_chlorophorum_NC_027093, [25] 26 Pavlova_lutheri_NC_020371, [26] 27 Choreocolax_polysiphoniae_NC_026522, [27] 28 Aureococcus_anophagefferens_NC_012898, [28] 29 Aureoumbra_lagunensis_NC_012903, [29] 30 Babesia_bovis_T2Bo_NC_011395, [30] 31 Trachydiscus_minutus_NC_026851, [31] 32 Nannochloropsis_granulata_NC_022259, [32] 33 Nannochloropsis_oculata_NC_022260, [33] 34 Nannochloropsis_oceanica_NC_022263, [34] 35 Nannochloropsis_salina_NC_022261, [35] 36 Nannochloropsis_limnetica_NC_022262, [36] 37 Nannochloropsis_gaditana_NC_020014, [37] 38 Vaucheria_litorea_NC_011600, [38] 39 Heterosigma_akashiwo_NC_010772, [39] 40 Odontella_sinensis_NC_001713, [40] 41 Phaeodactylum_tricornutum_NC_008588, [41] 42 Didymosphenia_geminata_NC_024083, [42] 43 Eunotia_naegelii_NC_024928, [43] 44 Fistulifera_solaris_NC_015403, [44] 45 Kryptoperidinium_foliaceum_NC_014267, [45] 46 Durinskia_baltica_NC_014287, [46] 47 Ulnaria_acus_NC_016731, [47] 48 Asterionella_formosa_NC_024079, [48] 49 Chaetoceros_simplex_NC_025310, [49] 50 Cerataulina_daemon_NC_025313, [50] 51 Coscinodiscus_radiatus_NC_024081, [51] 52 Lithodesmium_undulatum_NC_024085, [52] 53 Cylindrotheca_closterium_NC_024082, [53] 54 Asterionellopsis_glacialis_NC_024080, [54] 55 Thalassiosira_pseudonana_NC_008589, [55] 56 Roundia_cardiophora_NC_025312, [56] 57 Thalassiosira_weissflogii_NC_025314, [57] 58 Thalassiosira_oceanica_CCMP1005_NC_014808, [58] 59 Rhizosolenia_imbricata_NC_025311, [59] 60 Leptocylindrus_danicus_NC_024084, [60] 61 Ectocarpus_siliculosus_NC_013498, [61] 62 Fucus_vesiculosus_NC_016735, [62] 63 Saccharina_japonica_NC_018523, [63] 64 Chromerida_sp._RM11_NC_014345, [64] 65 Chromera_velia_NC_014340, [65] 66 Porphyridium_purpureum_NC_023133; TREE Fig._6 = (((61:10.3125,(62:5.2,63:5.2):10.3125):40.4346,(64:36.1173,(65:35.104,66:72.067):35.104):36.1173):20.2173,((60:20.1783,(59:19.8616,((58:8.325,(55:1.15,(56:0.0,57:0.0):1.15):8.325):20.6258,(54:15.0082,(40:14.4414,(53:13.9289,((51:5.2,52:5.2):14.0536,((49:3.6,50:3.6):11.4247,((47:3.275,48:3.275):9.15573,((45:1.8,46:1.8):6.50729,(44:4.57083,(43:3.075,(41:1.6,42:1.6):3.075):4.57083):6.50729):9.15573):11.4247):14.0536):13.9289):14.4414):15.0082):20.6258):19.8616):20.1783):41.022,(39:33.5366,(((15:9.35,16:9.35):25.875,((14:8.36042,(13:5.0875,(11:0.575,12:0.575):5.0875):8.36042):18.3322,(10:11.0339,((3:2.5,(1:0.0,2:0.0):2.5):8.77344,((4:1.15,5:1.15):5.83854,(9:2.85833,(8:2.05,(6:1.025,7:1.025):2.05):2.85833):5.83854):8.77344):11.0339):18.3322):25.875):39.6417,(38:27.6753,((37:14.0233,((30:5.05,31:5.05):9.70375,((35:1.475,36:1.475):2.2125,(34:0.0,(32:0.0,33:0.0):0.0):2.2125):9.70375):14.0233):29.8648,((28:4.175,29:4.175):22.453,(27:18.7378,(26:16.9106,(25:14.0434,((23:0.45,24:0.45):10.368,(22:8.01938,(21:4.61875,((17:1.15,18:1.15):2.875,(19:0.0,20:0.0):2.875):4.61875):8.01938):10.368):14.0434):16.9106):18.7378):22.453):29.8648):27.6753):39.6417):33.5366):41.022):20.2173); END;