#NEXUS [written Sun Jul 03 21:24:47 CAT 2016 by Mesquite version 3.04 (build 725) at Bullseye/192.168.56.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS 'Hypocrea neorufa GJS_96132' 'Hypocrea neorufa GJS_96135' 'Trichoderma hamatum DAOM_167057' 'Trichoderma hamatum GJS_04203' 'Trichoderma evansii Dis_380a' 'Trichoderma evansii DIS_341HI' 'Hypocrea flaviconidia GJS_9949' 'Trichoderma pubescens DAOM_166162' 'Trichoderma pubescens DAOM_229987' 'Hypocrea pezizoides GJS_01257' 'Trichoderma eijii TUFC_100002' Trichoderma_eijii_8139 'Trichoderma paucisporum GJS_0113' 'Trichoderma paucisporum GJS_0369' 'Trichoderma theobromicola Dis_85f' 'Trichoderma theobromicola Dis_376f' 'Trichoderma lickfeldtiae GJS_04196' 'Trichoderma lickfeldtiae GJS_0501' 'Trichoderma asperelloides GJS_996' 'Trichoderma asperelloides GJS_04116' 'Trichoderma asperellum GJS_01294' 'Trichoderma asperellum GJS_91162' 'Trichoderma yunnanense CBS_121219' 'Trichoderma strigosum DAOM_166121' 'Trichoderma restrictum PPRI_19367' ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "ML tree of Hamatum clade fig. 3.nex"'; DIMENSIONS NCHAR=790; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Hypocrea neorufa GJS_96132' TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGT---TTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCATCG--CAACACAATTTGT---CTCCATTGCACCGTCTGCCCTCAATGCTTTGTGATTCATTGTGCTGACCAGGTATTCAATTATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTGTTCTTCTCCAGACCGCGTCTGAAGATGGCCATTCTAACGCCCCGGGCGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGGACCAACCAAACTCTT-CTGCAGTCCGCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAACACAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCCCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Hypocrea neorufa GJS_96135' TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGT---TTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCATCG--CAACACAATTTGTCTCCTCCATTGCACCGTCTGCCCTCAATGCTTTGTGATTCATTGGGCTGACCAGGTATTCAATTATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTGTTCTTCTCCAGACCGCGTCTGAAGATGGCCATTCTAACGCCCCGGGCGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGGACCAACCAAACTCTT-CTGCAGTCCGCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAACACAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCCCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma hamatum DAOM_167057' TCTGGCTGCCTTGGTTGGTTTTTAGTGGGGTGCCAATTTGGCAGTGACCCCGCCATCGCCACTGTTCCTCATGCACTACCCAACACATGCTACGTAT-----------------------AACTGCTTGGTTCATTGTGCTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGA--CTGGTCACTATCCCAACATCATCATGCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma hamatum GJS_04203' TCTGGCTGCCTTGGTTGGTTTTTAGTGGGGTGCCAATTTGGCAGTGACCCCGCCATCGCCACTGTCCCTCATGCAGTACCCAACATATTCTACAGT------------------------AACGTCTTGGTTCATTGTGCTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGA--CTGTTCACTATCCCAACATCATCATGCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma evansii Dis_380a' TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGTCACTGTCCCT---CCATCACCCGACACATTCTACTTGTCAA----------------TTAATTGATTTTGGTTCATTGTACTAATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGA--CTAGTCGATATTTCAAGACCATCATTCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma evansii DIS_341HI' TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGTCACTGTCCCT---CCATCACCCGACACATTCTACTTGTCAA----------------TTAATTGATTTTGGTTCATTGTACTAATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGA--CTAGTCGATATTTCAAGACCATCATTCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Hypocrea flaviconidia GJS_9949' TCTGGCTGCCTTGTTTGGTTTTTAGTGGGG-GCCAATTTGGCAGCAACCCCGCTATCGCCACTGGCCCTCGTCCATCGCCCAACACACTCTCGAGTT-----------------------CTCTTTTGGGTTCATGGTGCTAATCATACTTCGATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTTGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGA--CTAGTCGATATTCCAACATCATCTCGCTAACGCCCCGGGCGCGTAGAAGCCCCGGAACCAGGCGCCCGCCGGAGGGACCGACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAGCCCCTCCGGGGGGTCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma pubescens DAOM_166162' TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGCCAATTTGGCAGCAACCCCGCTATTGCCACTGT--CTCACACATTGCCCAACATATTTTACTTCAA------------------TCAATTCTGTTTGGTTCATTGTACTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTTCGACTGTCGGTAATA-TCCAACATCATCATTCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma pubescens DAOM_229987' TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGCCAATTTGGCAGCAACCCCGCTATTGCCACTGT--CTCACACATTGCCCAACATATTTTACTTCAA------------------TCAATTCTGTTTGGTTCATTGTACTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTATTATGTCACCGTCATTGGTATGTTTTCAGTTCGACTGTCGGTAATATTCCAACATCATCATTCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Hypocrea pezizoides GJS_01257' TCTTGCTGCCTTGTTTGGTTTTTAGTGGGGTATCAATTTGGCAGCAACCCCGCTATCGCCACTGCCCCTCGTCCATCGCCCAACACACTCTACTT---------------CGAATCTTT-ATTTTTGTAATTCATTTTATTAATCATACTCGACTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTAGCC--CTCGTCGATACCTC---GCCATCATTCTAACGCCCCGGGTGCGTAGAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTCCTGTGGTCCCCTCGCGGACGTTATTTCTCGCAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAGCCCCCCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCCGAAATGCAGTGGCGGCCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma eijii TUFC_100002' TCTTGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGCCGCTGCCCCTCGTCCATCGCCCAACACACTCAACTT---------------CAAATCTCTAAGTTATTTAATTCATTTTATTAATCATACTCGACTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCCA--CTCGTCGATACTTCAAGGCCATCAT??????GCCCCGGGTGCGTAGAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTCCTGTGGTCCCCTCGCGGACGTTATTTCTCACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAGCCCCCCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA Trichoderma_eijii_8139 TCTTGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGCCGCTGCCCCTCGTCCATCGCCCAACACACTCAACTT---------------CAAATCTCTAAGTTATTTAATTCATTTTATTAATCATACTCGACTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCCA--CTCGTCGATACTTCAAGGCCATCATTCTAACGCCCCGGGTGCGTAGAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTCCTGTGGTCCCCTCGCGGACGTTATTTCTCACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAGCCCCCCCGGGGGGTCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma paucisporum GJS_0113' TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATCTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACACATTTTACCTGCTCAGTCGTATCGTCTGTTCTCAATTCTCTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCGGTCATCGTATACTTGACATGTCAAGATCATCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGGACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCTGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma paucisporum GJS_0369' TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATCTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACACATTTTACCTGCTCAGTCGTATCGTCTGTTCTCAATTCTCTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCGGTCATCGTATACTTGACATGTCAAGATCATCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGGACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCTGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma theobromicola Dis_85f' TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTAA-TTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACAGATTTTACTTGCTCAGTCGTATCGTCTGTTCTCAATTCTTTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAGGTTTTCAGTCCTCGTCTACTTGACATGTCAAAATCATCAATCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCTGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma theobromicola Dis_376f' TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCA-TTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACAGATTTTACTTGCTCAGTCGTATCGTCTGTTCTCAATTCTTTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAGGTTTTCAGTCCTCGTCTACTTGACATGTCAAAATCATCAATCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCTGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma lickfeldtiae GJS_04196' TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAAGTTGGCAGCAACCCCGCTATTGCCACCGTCGCT---CCATCGCCCAGCATATTCCACTTGCTCAATCGCATCGTCGGTTCTCAATTCTTTTCGGTTCATTGTGCTGATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGCGGTCCTACTTTGGTCGATATTTCGAGATTGTCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTGGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma lickfeldtiae GJS_0501' TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAAGTTGGCAGCAACCCCGCTATTGCCACCGTCGCT---CCATCGCCCAGCATATTCCACTTGCTCAATCGCATCGTCGGTCTTCAATTCTTTTCGGTTCATTGTGCTGATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGCGGTCCTACTTTGGTCGATATTTCGAGATTGTCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma asperelloides GJS_996' TCTCGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTGACGGCAACCCCACTATCGCCACTGTACCTCTTCCATCATCCACCACATGCT-TTTGTTCAATCGCATCGTCTATTTTCAA-TATCTCTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACACT---TCAGTCGACATTGCAAGATCGTCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma asperelloides GJS_04116' TCTCGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTGACGGCAACCCCACTATCGCCACTGTACCTCTTCCATCATCCACCACATGCTATTTGTTCAATCGCATCGTCTATTTTCAA-TATCTCTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACACT---TCAGTCGACATTGCAAGATCGTCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma asperellum GJS_01294' TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGCCACTGCACCTCTTCCATCACCCACCACATGCTATTTGCTCAATCGCGTCG-----------TCTTTTTTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACTCTTCTGCTATCGACATTCCAAGTCCGCCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTATTTCTTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCTAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma asperellum GJS_91162' TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGCCACTGCACCTCTTCCATCACCCACCACATGCTATTTGCTCAATCGCGTCG-----------TCTTTTTTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACTCTTCTGCTATCGACATTCCAAGTCCGCCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTATTTCTTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCTAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma yunnanense CBS_121219' TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGCCACTGCACCTCTTCTATCACCCACCACATGCTATTTGCTCAATCGCATCGTCTATTGTCAATCTATTTTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTAGGCTCTTCTCCAGTCGACATCGCAAGTCCGCCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma strigosum DAOM_166121' TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGCCAGTTGGCAAGCAACCCCGCTATCGCCACTGTAGCTCGTCCATCGCCCAACACATTCTACTC-TACCATCGCATCGTCTTTGCCTCGAATCTCTTGATTCATTATGCTGATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGAAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTTAGTTTC---CTCATTGACATCTCGAAATCATCATTCTAACGCCCCGGGCGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTTTTACTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATGGGAACCCCTAAGACGGGTCCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA 'Trichoderma restrictum PPRI_19367' TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCGATTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCATCGCTCAACACATTCTGCTT-----GTCAATCAATTTATCTCTGTTTCATTGTGGTTCATGGTGCTAATTGTACTTCAATCAATAGGAGGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTTGGATGCTGCTTCGGTCGACATCTCGATATCATCATTCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACCCTTTGT--------TTTCGGTATTTTCTTCATTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCTCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCAGCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA ; END; BEGIN TREES; Title 'Trees from "ML tree of Hamatum clade fig. 3.nex"'; LINK Taxa = Taxa; TRANSLATE [0] 1 'Hypocrea neorufa GJS_96132', [1] 2 'Hypocrea neorufa GJS_96135', [2] 3 'Trichoderma hamatum DAOM_167057', [3] 4 'Trichoderma hamatum GJS_04203', [4] 5 'Trichoderma evansii Dis_380a', [5] 6 'Trichoderma evansii DIS_341HI', [6] 7 'Hypocrea flaviconidia GJS_9949', [7] 8 'Trichoderma pubescens DAOM_166162', [8] 9 'Trichoderma pubescens DAOM_229987', [9] 10 'Hypocrea pezizoides GJS_01257', [10] 11 'Trichoderma eijii TUFC_100002', [11] 12 Trichoderma_eijii_8139, [12] 13 'Trichoderma paucisporum GJS_0113', [13] 14 'Trichoderma paucisporum GJS_0369', [14] 15 'Trichoderma theobromicola Dis_85f', [15] 16 'Trichoderma theobromicola Dis_376f', [16] 17 'Trichoderma lickfeldtiae GJS_04196', [17] 18 'Trichoderma lickfeldtiae GJS_0501', [18] 19 'Trichoderma asperelloides GJS_996', [19] 20 'Trichoderma asperelloides GJS_04116', [20] 21 'Trichoderma asperellum GJS_01294', [21] 22 'Trichoderma asperellum GJS_91162', [22] 23 'Trichoderma yunnanense CBS_121219', [23] 24 'Trichoderma strigosum DAOM_166121', [24] 25 'Trichoderma restrictum PPRI_19367'; TREE tree_1 = (24:0.079781,(((19:0.0,20:0.0):0.035535,(23:0.012631,(21:0.0,22:0.0):0.033159):0.01623):0.044116,((1:0.0,2:0.002807):0.157372,(((13:0.0,14:0.0):0.01831,(15:0.002632,16:0.0):0.014872):0.038184,((17:0.002651,18:0.005309):0.045539,((25:0.190344,(10:0.030524,(11:0.0,12:0.002869):0.013397):0.099102):0.0,((5:0.0,6:0.0):0.036152,((8:0.0,9:0.002889):0.051429,(7:0.076304,(3:0.019185,4:0.016949):0.049205):0.008021):0.014795):0.011714):0.025767):0.009209):0.000003):0.007832):0.079781); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of Hamatum clade fig. 3.nex"') = unord: 1 - 790; END; BEGIN NOTES; ALTTAXNAMES * UNTITLED = AF348115_H_neorufa_strain_GJS_96132 AF487670_H_neorufa_T_strain_G_J_S__96135 AF456911_T_hamatum_T_strain_DAOM_167057 EU883565_T_hamatum_strain_GJS_04203 EU856320_T_evansii_strain_Dis_380a EU883566_T_evansii_T_strain_DIS_341HI DQ020001_H_flaviconidia_T_gjs_9949 AY750887_T_pubescens_T_Daom_166162 Trichoderma_pubescens__EU279964strainDAOM229987 AY937438_H_pezizoides_T_strain_GJS_01257 JX684011_T_eijii_T_strain_TUFC_100002 Trichoderma_eijii_8139__KJ634769 DQ109540_T_paucisporum_T_strain_GJS_0113 DQ109541_T_paucisporum_strain_GJS_0369 EU856321_T_theobromicola_T_strain_Dis_85f EU856322_T_theobromicola_strain_Dis_376f EU856324_T_lieckfeldtiae_strain_GJS_04196 EU856328_T_lieckfeldtiae_strain_GJS_0501 DQ109550_T_asperelloides_strain_GJS_996 GU248412_T_asperelloides_T_strain_GJS_04116 'EU856323_T_asperellum_T_strain_GJS_01294__cbs443.97_' Trichoderma_asperellum_gjs_91162__FJ463285 GU198243_T_yunnanense_T_strain_CBS_121219 AY937442_T_Strigosum_OUT_Strain_DAOM166121 Tri_144_ef_4234___reversed_; ALTTAXNAMES Alternative_Naming2 = 'Hypocrea neorufa GJS_96132' 'Hypocrea neorufa GJS_96135' 'Trichoderma hamatum DAOM_167057' 'Trichoderma hamatum GJS_04203' 'Trichoderma evansii Dis_380a' 'Trichoderma evansii DIS_341HI' 'Hypocrea flaviconidia GJS_9949' 'Trichoderma pubescens DAOM_166162' 'Trichoderma pubescens DAOM_229987' 'Hypocrea pezizoides GJS_01257' 'Trichoderma eijii TUFC_100002' Trichoderma_eijii_8139 'Trichoderma paucisporum GJS_0113' 'Trichoderma paucisporum GJS_0369' 'Trichoderma theobromicola Dis_85f' 'Trichoderma theobromicola Dis_376f' 'Trichoderma lickfeldtiae GJS_04196' 'Trichoderma lickfeldtiae GJS_0501' 'Trichoderma asperelloides GJS_996' 'Trichoderma asperelloides GJS_04116' 'Trichoderma asperellum GJS_01294' 'Trichoderma asperellum GJS_91162' 'Trichoderma yunnanense CBS_121219' 'Trichoderma strigosum DAOM_166121' 'Trichoderma restrictum PPRI_19367'; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of Hamatum clade fig. 3.nex"') = universal: 1 - 790; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of Hamatum clade fig. 3.nex"') = 'Jukes-Cantor': 1 - 790; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1467573887840; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 43592902277776106; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1390104439494024646; mqVersion 304; checksumv 0 3 60130858 null getNumChars 790 numChars 790 getNumTaxa 25 numTaxa 25 short true bits 15 states 15 sumSquaresStatesOnly 404511.0 sumSquares 404511.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 415; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1916 961; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #43592902277776106 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #43592902277776106; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.lists.TaxonListArchivedName.TaxonListArchivedName; getTable; tell It; columnWidth 1 392; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1501 889; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #43592902277776106 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1165.1467547932073.3529378597305482725; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1501 889; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1390104439494024646 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1501 889; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;