#NEXUS [written Tue Jul 19 00:27:52 CAT 2016 by Mesquite version 3.04 (build 725) at Bullseye/192.168.56.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=53; TAXLABELS Trichoderma_koningii_PPRI20670 'Trichoderma koningii CBS_457_96' 'Trichoderma koningii GJS_89_122' 'Trichoderma koningii GJS_00_168_' Trichoderma_koningiopsis_PPRI20683 'Trichoderma koningiopsis GJS_93_20' 'Trichoderma koningiopsis GJS_04_373' 'Trichoderma koningiopsis GJS_95_175' 'Trichoderma ovalisporum Dis_203c' 'Trichoderma ovalisporum Dis_70a' 'Trichoderma taiwanense GJS_95_93' 'Trichoderma intricatum GJS_02_78' 'Trichoderma intricatum GJS_97_88' 'Trichoderma caribbaeum GJS_98_43' 'Trichoderma caribbaeum GJS_97_3' 'Trichoderma dorotheae GJS_99_194' 'Trichoderma dorotheae GJS_99_202' 'Trichoderma dingleyae GJS_99_203' 'Trichoderma petersenii GJS_04_164' 'Trichoderma petersenii GJS_04_355' 'Trichoderma ochroleucum CBS_119502' Trichoderma_viride_PPRI20672 'Trichoderma viride CBS_240_63' 'Trichoderma viride CPK_2867' 'Trichoderma viride GJS_04_372' 'Trichoderma viride CBS_119325' 'Trichoderma viride ATCC_28038' 'Trichoderma martiale GJS_04_40' Trichoderma_gamsii_PPRI20680 'Trichoderma gamsii GJS_92_60' 'Trichoderma gamsii GJS_04_09' 'Trichoderma gamsii GJS_05_111' 'Trichoderma gamsii UNISS_4_2PDA' Trichoderma_hispanicum_S453 'Trichoderma paraviridescens CBS_119321' 'Trichoderma viridescens CBS_433_34' 'Trichoderma valdunense CBS_120923' 'Trichoderma erinaceus DAOM_237546' 'Trichoderma erinaceus DAOM:230019' Trichoderma_atroviride_PPRI20685 'Trichoderma atroviride GJS_98_134' 'Trichoderma atroviride GJS_96_200' 'Trichoderma atroviride CBS_119499' 'Trichoderma atroviride C_T_R_81_50' 'Trichoderma stilbohypoxyli DIS_259J' 'Trichoderma stilbohypoxyli GJS_96_30a' 'Trichoderma strigosum ATCC_28031' 'Trichoderma strigosum DAOM_166121' 'Trichoderma austrokoningii GJS_99_147' 'Trichoderma austrokoningii GJS_99_146' 'Trichoderma rogersonii GJS_94_115' 'Trichoderma rogersonii GJS_04_158' 'Trichoderma minutisporum DAOM_167069' ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "ML tree of T.viride tree supp fig 4.nex"'; DIMENSIONS NCHAR=413; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Trichoderma_koningii_PPRI20670 ?????????????????????????TCTGCTGCATCGTTTGGTTTTTAGTGGGGTGTCAA-TTTTTTTGGCAACCCCGCTATCGCCGCTGTCCCTCATCCATCGTCTCAACAAATTGCACTTTTTCAATCGCATCGCCTTTTGACTTGATGTCTTTTTTATTCATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTATTCTAACACTTGACACGAAATCATCATTCTAACGTGTCG--CTGCAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma koningii CBS_457_96' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCATCGTTTGGTTTTTAGTGGGGTGTCAA-TTTTTTGAGCAACCCCGCTATCGCCGCTGTCCCTCGTCCATCGTCTCAACAAATTGCACTCTTTCAATCGCATCGCCTTT------------------ATTCATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCATTCTAACTCTTGACACGAAATCATCATTCTAACGTGCCG--CTGCAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma koningii GJS_89_122' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCATCGTTTGGTTTTTAGTGGGGTGTCAA-TTTTTTGAGCAACCCCGCTATCGCCGCTGTCCCTCGTCCATCGTCTCAACAAATTGCACTCTTTCAATCGCATCGCCTTT------------------ATTCATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCATTCTAACTCTTGACACGAAATCATCATTCTAACGTGCCG--CTGCAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma koningii GJS_00_168_' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCATCGTTTGGGTTTTAGTGGGGTGTCAA-TTTTTTGAGCAACCCCGCTATCGCCGCTGTCCCTCGTCC-CCGTCTCAACAAATTGCACTCTTTCAATCGCATCGCCTTT------------------ATTCATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCATTCTAACTCTTGACACGAAATCATCATTCTAACGTGCCG--CTGCAGACGCTCCCGGTCACCGTGATTTCATCAA Trichoderma_koningiopsis_PPRI20683 ?????????????????????????TCTGCTGCCTCGTTTGAC-TTTAGTGGGGTGTCAA-TTTTTTTGACAACCCCGCTATCGCCACTGTCCCTCGTCCATCGTCCCAACAAAATGCACTCATTCAACCGCATCGTCTTTTGACTCGATTTCTCTATGGTTCATTGTGCTAATCATGGTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTATTCTGGCTCTTGACACGAAATCATCCTTCTAACGTGCCA--CTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma koningiopsis GJS_93_20' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGAC-TTTAGTGGGGTGCCAA-ATTTTTTGGCAACCCCGCTATCGCCACTGTCTCTCGTCCATCGTCCCAACAAAATGCACTCATTCAACCGCATCGTCTTTTGACTCGATTTCTCTATGGTTCATTGTGCTAATCATGGTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCATTCTGGCTCTTGACACGAAATCACCCTTCTAACGTGCCA--CTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma koningiopsis GJS_04_373' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGAC-TTTAGTGGGGTGCCAATTTTTTTTGACAACCCCGCTATCGCCACTGTCCCTCGTCCATCGTCCCAACAAAATGCAGTCATTCAACCGCATCGTCTTTTGACTCGA-TTCTCTATGGTTCATTGTGCTAATCATGGTTAAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGAGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTATTCTGGCTCTTGACACGAAATCATCCTTCTAACGTGCCA--CTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma koningiopsis GJS_95_175' CTACCCCTCCTTTGGCA----TTTTTCTGCTGTCTCGTTTGAC-TTTAGTGGGGTGCCAA-TTTTTTGGGCAACCCCGCTATCGCCACTGTCTC---TCCATCGTCCCAACAAAATGCACTCATTCAATCGCATCGTCTTTTGACTCGATTTCTCTATGGTTCATTGTGCTAATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTATTCTGGCTCTTGACACGACATCATCATTCTAACGTGCCA--CTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma ovalisporum Dis_203c' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTTGTTTGAC-TTTAGTGGGGTGCCA--TTTTTTTGGCAACCCCGCTATTGCCACTGTCCCTCATCCATCGTCCCAACAAATTGCACTCACTCAATCGCATCGCCTTTTGACTCGATTTCTCTATGGTTCATTGTGCTGATCATGCTTCAATCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCG?CATTGGTATGTTATTTCAGTCCTTGACACGAGATCATCATTCTAACGTGCCA--TCACA?ACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma ovalisporum Dis_70a' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTTGTTTGAC-TTTAGTGGGGTGCCA--TTTTTTTGGCAACCCCGCTATTGCCACTGTCCCTCATCCATCGTCCCAACAAATTGCACTCACTCAATCGCATCGCCTTTTGACTCGATTTCTCTATGGTTCATTGTGCTGATCATGCTTCAATCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTATTTCAGTCCTTGACACGAGATCATCATTCTAACGTGCCA--TCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma taiwanense GJS_95_93' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGGC-TTTAGTGGGGTGCCAACTTTTTTTGGCAACCCCGCTATCGCCACTGTCCCTCATGCGTTATCCCAACAAAGCG----CCCTCAGTCGCATCGCCTCTTGACTCAATTTCTCTGTGATTCATCGTGCTGATCATGCTTCAATCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATCGGTATGTTATTTCGGTCCTTGACACCAGATCATCATTCTAACATGCCA--TCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma intricatum GJS_02_78' CTACCCCTCCTTTGGCA----TTTTTTTGCTGCCTCGTTTGACTTTTAGTGGGGTGCCAACTTTTTCTGGCAGCCCCGCTATTGTCGCTGTCCCTCATCCATCGTCCCAACGAATTGCACTCTCTCAATTGCATCACCTCTCGACTCAATTTCTCTGTGGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGCTTCAGTCCTTGACACGAGATCATCATTCTAACGTGCCA--CTGCAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma intricatum GJS_97_88' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGACTTTTAGTGGGGTGCCAACTTTTTCTGGCAGCCCCGCTATTGTCGCTGTCCCTCATCCATCGTCCCAACGAATTGCACTCTTTCAATCGCATCACCTCTCGACTCAATTTCTCTGTGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAGCTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGTTGCTTCAGTCCTTGAAACGAGATCATCATTCTAACGTGCCA--CTGCAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma caribbaeum GJS_98_43' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGACTTTTAGTGGGGTGCCAAGTTTCCCTGGCAACCCCGCTATTGTCACTGTCCCTCATC--------------------------------CATCGCCTCTTGACTCAATTTCTCTGTGGTTCATCGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATCGGTATGTTATTTCGGTCCTTGACACCAGATCATCATTCTAACATGCCA--TCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma caribbaeum GJS_97_3' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGACTTTTAGTGGGGTGCCAAGTTTCCCTGGCAACCCCGCTATTGTCACTGTCCCTCATC--------------------------------CATCGCCTCTTGACTCAATTTCTCTGTGGTTCATCGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATCGGTATGTTATTTCGGTCCTTGACACCAGATCATCATTCTAACATGCCA--TCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma dorotheae GJS_99_194' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGAC-TTTAGTGGGGTGCCAACTTTTTTGGCCAACCCCGCTATTGTCACTG-CCCTCATC--------------------------------CATCGCCTCTTGACTCAATTTCTC--TGATTCATCGTGCTGATCATGCTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATCGGTATGTTATTTCGGTCCTTGACACCAGATCATCATTCTAACATGCCA--TCGCAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma dorotheae GJS_99_202' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGAC-TTTAGTGGGGTGCCAACTTTTTTGGCCAACCCCGCTATTGTCACTG-CCCTCATC--------------------------------CATCGCCTCTTGACTCAATTTCTC--TGATTCATCGTGCTGATCATGCTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATCGGTATGTTATTTCGGTCCTTGACACCAGATCATCATTCTAACATGCCA--TCGCAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma dingleyae GJS_99_203' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGACTTTGAGTGGGGTGCCAACTCTCCCTGGCAACCCCGCTATTGTCGCTGTCCCTCACC--------------------------------CATCGCCTCTTGACTCAATTTCTCTGTGATGCATCGTGCTGATCATGCTTCAATCATTAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATCGGTATGTTATTTCGGTCCTTGACACCAGATCATCATTCTAACATGCCA--TCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma petersenii GJS_04_164' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGACTTTTAGTGGGGTGCCAACTTCCCCTGGCAACCCCGCTATTGTCACTGTCCCTCATCC-------------------------------CATCGCCTCTTGACTCAATTTCTCTGTGGTTTATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATCGGTATGTTATTTCGGTCCTTGACACCAGATCATCATTCTAACATGCCA--TCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma petersenii GJS_04_355' CTACCCCTCCTTTGGCA----TTTTTCTGCTGCCTCGTTTGACTTTTAGTGGGGTGCCAACTTTCCCTGGCAACCCCGCTATTGTCACTGTCCCTCATCC-------------------------------CATCGCCTCTTGACTCAATTTCTCTGTGGTTTATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATCGGTATGTTATTTCGGTCCTTGACACCAGATCATCATTCTAACATGCCA--TCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma ochroleucum CBS_119502' CTACCCCTCCTTGGGCA----ATTTTCTGTTGCCTTGTTTGACTTTTAGTGGGGTGCCAACTTTTTCTGGCAACCCCGCTATTGTCGCTGTGCCTCGTCCATCATCCAACAAAAGTCCATTCTCTCAGTCGCATCGCCTCTCGATTCAGTTTCTCTGTTGTTCATTGTGCTAATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACAATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAGGTACTATGTCACCGTCATTGGTATGTTGTTTCGGTCCCTGACACGAGATCGTCATTCTAACGCGCCA--CTGCAGACGCTCCCGGCCACCGTGATTTCATCAA Trichoderma_viride_PPRI20672 ????????????????????????TCTGGCTGTCTCGTTTGGCTCTGAGTGGGGTGCCAACTGTTGGCAGCGACCCCGCTATCGTCACTGTCCCTCATCCATCGTCCCAACACATTGTGCTCATTCAATCGCATCGTCTTTTGCGTCAATTCCTTTGTGGTTCATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTATGTTTTTTCCCTCGATGACACGCCATCATCATTCTAACGTGCCACTCTGCAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma viride CBS_240_63' CTACCCCTCATTTTGCACAGCTTTTCTGGCAGTCTTGTTTGGCTCTGAGTGGGGTGTCAATTGTTGGCAGCGACCCCGCCATCGCCACTGTCCCTCATCCATCGTCCCAACACATTGTGCTCATTCAATCGCATCGTCTTTTGCCTCAATTCCTTTGTGGTTCATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTATGTTTTTTCCCTCAATGACACGCCATCATCATTCTAACGTGCCACTCTGCAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma viride CPK_2867' CTACCCCTCATTTTGCACAGCTTTTCTGGCAGTCTTGTTTGGCTCTGAGTGGGGTGTCAATTGTTGGCAGCGACCCCGCCATCGCCACTGTCCCTCATCCATCGTCCCAACACATTGTGCTCATTCAATCGCATCGTCTTTTGCCTCAATTCCTTTGTGGTTCATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTATGTTTTTTCCCTCAATGACACGCCATCATCATTCTAACGTGCCACTCTGCAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma viride GJS_04_372' CTACCCCTCATTTTGCACAGCTTTTCTGGCAGTCTTGTTTGGCTCTGAGTGGGGTGCCAACTGTTGGCAGCGACCCCGCCATCGCCACTGTCCCTCATCCATCGTCCCAACACATTGTGCTCATTCAATCGCATCGTCTTTTGCCTCAATTCCTTTGTGGTTCATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTATGTTTTTTCCCTCAATGACACGCCATCATCATTCTAACGTGCCACTCTGCAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma viride CBS_119325' CTACCCCTCATTTTGCACAGCTTTTCTGGCTGTCTTATTTGGCTCTGAGTGGGGTGCCAACTGTTGGCAGCGACCCCGCTATCGCCACTGTCCCTCATCCATCGTCCCAACACATTGTGCTCATTCAATCGCATCGTCTTTTGCCTCAATTCCTTTGGGGTTTATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAGATACTATGTCACCGTCATTGGTATGTTTTTTCCCTCAATGACACGCCATCATCATTCTAACGTGCCACTCTGCAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma viride ATCC_28038' CTACCCCTCCTTTTGCACAGCTTTTCTTGCTGTCTGGTTTGGCTCTGAGTGGGGTGCCAACTTTTGGCAGCGACCCCGCTATCGCCACTGTCCCTCATCCATCGTCCCAACACATTGTACTCATTCAATCGCATCGTCTTTTGCCTCAA-TTCTTTGTGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTTTCCCTCATTGACACGGCATCATCATTCTAACGTGCCACTCTGCAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma martiale GJS_04_40' CTACCCCTCCTTTTGCACAGCTTTTCTTGCTGTCTTGTCTGCCTCTGAGTGGGGTGCCAACTGTTGGCAGCGACCCCGCTATCGCCACTGTCCCTCATTCATCGTCCCAACACATTGTACTCATTCAATCGCATCGTCCTTTGCCTCAATTTCTTTGTGGTTCATTGCGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTC-GCTTCATTGACACGACATCATCATTCTAACGTGCCACTCTGCAGACGCTCCCGGCCACCGTGATTTCATCAA Trichoderma_gamsii_PPRI20680 ????????????????????????TCTGGCTGCC---TTTGGTTTTTAGTGGGGTGCTAGCTTTTTCTGGCAACCCCGCTATCGCCTCTGTCCCTCATCCATCGTCTTAACAATTTG--TTCACTCAATCGCAT----------CTCATTTTCTCTGTGGTTCAATGTGCTGATCATGATTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATG-TTTTATCCTCATTGGCGCGAAATCATGATTCTAACGTGCCACTCTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma gamsii GJS_92_60' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCC---TTTGGTTTTTAGTGGGGTGCTAGCTTTTTCTGGCAACCCCGCTATCGCCTCTGTCCCTCATCCATCGTCTTAACAATTTG--TTCACTCAATCGCAT----------CTCATTTTCTCTGTGGTTCAATGTGCTGATCATGATTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATG-TTTTATCCTCATTGGCGCGAAATCATGATTCTAACGTGCCACTCTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma gamsii GJS_04_09' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGCCAGCTTTTTCTGGCAACCCCGCTATCGCCGCTGTCCCTCATCCATCGTCTTCACAATTTG--TTCACTCAATCGCAT----------CTCATTTTCTCCGTGGTTCAATGTGCTGATCATGATTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATG-TTTTATCCTCATTGGCGCGAAATCATGATTCTAACGTGCCACTCTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma gamsii GJS_05_111' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGCCAGCTTTTTCTGGCAACCCCGCTATCGCCGCTGTCCCTCATCCATCGTCTTAACAATTTG--TTCACTCAATCGCAT----------CTCATTTTCTCCGTGGTTCAATGTGCTGATCATGATTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATG-TTTTATCCTCATTGGCACGAAATCATGATTCTAACGTGCCACTCTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma gamsii UNISS_4_2PDA' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGCCAGCTTTTTCTGGCAACCCCGCTATCGCCGCTGTCCCTCATCCATCGTCTTAACAATTTG--TTCACTCAATCGCAT----------CTCATCTTCTCTGTGGTTCAATGTGCTGATCATGATTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATG-TTTTATCCTCATTGGCGCGAAATCATGATTCTAACGTGCCACTCTACAGACGCTCCCGGCCACCGTGATTTCATCAA Trichoderma_hispanicum_S453 CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCGACTTTTTTTGGCAACCCCGCTTTCGCCGCTGTCCCTCACCCATCGTCCCAACAACTTGTTCTCACTCAATCACATCGTCTTT-GCCTCATTTTTCTCGTGGTTCATTGTGCTGATCAGGATTCAATCAATAGGAAGCCGCCGAACTTGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATG-TTTTTTCCTCATTGACACGAAATCATCATTCTAACGTGCCGCTCCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma paraviridescens CBS_119321' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGCCATTTTTTGGCAACAACCCCGCTATCGCCGTTGTCCCTCATCCCTTGTACCAACAATTTGATCTCACTCAATCACATCGTCTTCTGCCTCATGTTGTCCGTGGTTCATTGTGCTGATCATAATTCAATCAATAGGAAGCTGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATG-TTTTTTCCTCATTGACATGGAATCATTATTCTAACGTGCCGCTCCACAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma viridescens CBS_433_34' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGCCAATTTTTGGCAACAACCCCGCTATCGCCGTTGTCCCTCATCCATCGTCCCAACAATTTGATCTCACTCAATCACATCGTCTTCTGCCTCATTTTCTCCCTAGTTCATTGTACTGATCATGATTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATG-TTTTTTCCTCATTGACACGCAATCATTATTCTAACGTGCCGCTCCACAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma valdunense CBS_120923' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCACGGTTGGCTTTTAGTGGGGTGCCAACTTTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCGTCAATCGCCCCGACACATTGTGCTCACTCAATCGCGTCGTCTTTCGCCTCAA--TCTCTGTGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGTTTCAGTCCTTGACACGGGATCACCATGCTAACGTGCTCGTCTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma erinaceus DAOM_237546' CTACCCCTCCTTTGGCTCAGCTTTTCTGGTTGCCTTGTTTGGTTTGTAGTGGGGTGCCAACTTTTGGCAGCAACCCCGCTATCGCCACTGTCCTTCATCCATCATCCCAATGCCTTGTTCTCACTCAATCGCATCGTCTTTTGCCTCAA----TTTATGATTCATTGTGCTAATCATGTTTCAACCAATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTTTTCCTCATTGACACGAAATCATTATCCTAACGTGCCACTCTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma erinaceus DAOM:230019' CTACCCCTCCTTTGGCTCAGCTTTTCTGGTTGCCTTGTTTGGTTTTTAGTGGGGTGCCAACTTTTGGCAGCAACCCCGCTATCGCCACTGTCCTTCATCCATCATCCCAATGCCTTGTTCTCACTCAATCGCATCGTCTTTTGCCTCAA----TTTATGATTCATTGTGCTAATCATGTTTCAACCAATAGGAAGCCGCCGAACTCGGAAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTTTTCCTCATTGACACGAAATCAATATCCTAACGTGCCACTCTACAGACGCTCCCGGCCACCGTGATTTCATCAA Trichoderma_atroviride_PPRI20685 ????????????????????????TCTGGCTGCCTTGCTTGGCTTTTAGTGGGGTGCCAACGTTTGGCTGCAACCCCGCTATCGCGACTGTCC---------CGTCCCAACGAATTGT----ACTCAATTGCATCGTCTTCT----CCATCTCTGTGTGGTTCATTGTGCTAATCATGCTTCAATCAATAGGAAGCCGCCGAGCTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTTCCTCATTGATAGGAGACCAAGATTCTAACGTGCCGCTCTGTAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma atroviride GJS_98_134' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGCTTGGCTTTTAGTGGGGTGCCAACGTTTGGCTGCAACCCCGCTATCGCGACTGTCC---------CGTCCCAACGAATTGT----ACTCAATTGCATCGTCTTCT----CCATCTCTGTGTGGTTCATTGTGCTAATCATGCTTCAATCAATAGGAAGCCGCCGAGCTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTTCCTCATTGATAGGAGACCAAGATTCTAACGTGCCGCTCTGTAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma atroviride GJS_96_200' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGCTTGGCTTTTAGTGGGGTGCCAACGTTTGGCTGCAACCCCGCTATCGCCACTGTCC---------CGTCCCAACGAATTGT----ACTCAATTGCATCGTCTTCT----CCATCTCTGTGTGGTTCATTGTGCTAATCATGCTTCAATCAATAGGAAGCCGCCGAGCTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTTCCTCATTGATAGGAGACCAAGATTCTAACGTGCCGCTCTGTAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma atroviride CBS_119499' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGCTTGGCTTTTAGTGGGGTGCCAACGTTTGGCTGCAACCCCGCTATCGCCACTGTCC---------CGTCCCAACGAATTGT----ACTCAATTGCATCGTCTTCT----CCATCTCTGTGTGGTTCATTGTGCTAATCATGCTTCAATCAATAGGAAGCCGCCGAGCTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTTCCTCATTGATAGGAGACCAAGATTCTAACGTGCCGCTCTGTAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma atroviride C_T_R_81_50' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGCTTGGCTTTTAGTGGGGTGCCAACGTTTGGCTGCAACCCCGCTATCGCCACTGTCC---------CGTCCCAACGAATTGT----ACTCAATTGCATCGTCGTCT----CCATCTCTGTGTGGTTCATTGTGCTAATCATGCTTCAATCAATAGGAAGCCGCCGAGCTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTTCCTCATTGATAGGAGACCAAGATTCTAATGTGCCGCTCTGTAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma stilbohypoxyli DIS_259J' CTACCCCTCCTTTTGCACAGCTTTTCTGTCTGCCTTG-TTGGCTTTTAGTGGGGTGCCAT-TTTTGGCAACAACCCCGCTATTGCTACTGTCCCTCATCCATCATCCCGACAATTGAT-----CTCAATCGCATCGTCATTT-----CTCAATTTTGTAATTCATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTTTCCCTCATTGACACGAAAGCATCATTCTAACTTGCCA--CTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma stilbohypoxyli GJS_96_30a' CTACCCCTCCTTTTGCACAGCTTTTCTGTCTGCCTTG-TTGGCTTTTAGTGGGGTGTCAATGTTTGGCAACAACCCCGCTATTGCCACTGTCCCTCATCCATCATCCCGACAATTGAT-----CTCAATCGCATCGTCATTT-----CTCATTTTTGTAATTCATTGTGCTGATCATGTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTTTCCCTCATTGACACGAAAGCATCATTCTAACTTGCCA--CTACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma strigosum ATCC_28031' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGCCAGCTTTGGCAAGCAACCCCGCTATCGCCACTGTAGCTCGTCCATCGCCCCAACACATTCTACTC-TACCATCGCATCGTCTTT-GCCTCGA-AATCTCTTGATTCATTATGCTGATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGAAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTTTTCCTCATTGACACGAAATCATCATTCTAACATGTTGCCTCACAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma strigosum DAOM_166121' CTACCCCTCCTTTGGCACAGCTTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGCCAGCTTTGGCAAGCAACCCCGCTATCGCCACTGTAGCTCGTCCATCGCCCCAACACATTCTACTC-TACCATCGCATCGTCTTT-GCCTCGA-AATCTCTTGATTCATTATGCTGATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGAAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTTTTCCTCATTGACACGAAATCATCATTCTAACATGTTGCCTCACAGACGCTCCCGGTCACCGTGATTTCATCAA 'Trichoderma austrokoningii GJS_99_147' CTACCCCTCCTTTGTCACAGCTTCTCTGCCTGCCTTG-TTGACTTTTAGTGGGGTGCCATTTTTTGGCAGCAACCCAGCTATCGCCACCGTGTCC-----------------------ATCCACTCAATCGCTTTTTATCTT----TGTTCATGTCCTTGTTCATCGTGCTGATCATCATTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCGTCCTTGTCGACGCGAAGTGATCATTCTAACATGCTGCTTCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma austrokoningii GJS_99_146' CTACCCCTCCTTTGTCACAGCTTCTCTGCCTGCCTTG-TTGACTTTTAGTGGGGTGCCATTTTTTGGCAGCAACCCAGCTATCGCCACCGTGTCC-----------------------ATCCACTCAATCGCTTTTTATCTT----TGTTCATGTCCTTGTTCATCGTGCTGATCATCATTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCGTCCTTGTCGACGCGAAGTGATCATTCTAACATGCTGCTTCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma rogersonii GJS_94_115' CTACCCCTCCTTTGGCACAGCTTTTCTGTCTGCCTTGTTTGGCCTTTAGTGGGGTACCA--TTTTGGTAGCAACCCCGCTATCGTCACTGTATCTTGTCCATCGTCTCAACAAATT--------CCAATCGCATCGTCGCTC------CAAGTCTTTCTTTTCATTGTGCTGATCATCATTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCACGTCCTCGTTGACGCGAAATCATCATTCTAACATGCTGCTTCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma rogersonii GJS_04_158' CTACCCCTCCTTTGGCACAGCTTTTCTGTCTGCCTTGTTTGGCTTTTAGTGGGGTACT---TTTTGGTAGCAACCCCGCTATCGTCACTGTGTCTTGTCCATCGTCCCAACCAATT--------CCAATCGCATCGTCGCTC------AAGTCTTTCTTTTTCATTGTGCTGATCATCATTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCACGTCCTCGTTGACGCGAAATCATCATTCTAACATGCTGCTTCACAGACGCTCCCGGCCACCGTGATTTCATCAA 'Trichoderma minutisporum DAOM_167069' CTACCCCTCCTTTGGGCAGATTTTTTTGGTTGCCTCGTTTGGCTTTAGTGGGGGTGCTC--TTTGTGTGGCAACCCCACCATTACCTACGACTACCATTTGCTGGCCTCTCCAATTCATTTCATCAAGCCGCGTTGCCT---GCTTTATTTCATTCGTATTAATCAATGCTAACCATGTTTCCTTCAATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAGGTTTTTTTCTCGCTCGCCGCCCAAACTCAAAGCTAATACCAAATTTCACAGACGCTCCCGGTCACCGTGATTTCATCAA ; END; BEGIN TREES; Title 'Trees from "ML tree of T.viride tree supp fig 4.nex"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Trichoderma_koningii_PPRI20670, [1] 2 'Trichoderma koningii CBS_457_96', [2] 3 'Trichoderma koningii GJS_89_122', [3] 4 'Trichoderma koningii GJS_00_168_', [4] 5 Trichoderma_koningiopsis_PPRI20683, [5] 6 'Trichoderma koningiopsis GJS_93_20', [6] 7 'Trichoderma koningiopsis GJS_04_373', [7] 8 'Trichoderma koningiopsis GJS_95_175', [8] 9 'Trichoderma ovalisporum Dis_203c', [9] 10 'Trichoderma ovalisporum Dis_70a', [10] 11 'Trichoderma taiwanense GJS_95_93', [11] 12 'Trichoderma intricatum GJS_02_78', [12] 13 'Trichoderma intricatum GJS_97_88', [13] 14 'Trichoderma caribbaeum GJS_98_43', [14] 15 'Trichoderma caribbaeum GJS_97_3', [15] 16 'Trichoderma dorotheae GJS_99_194', [16] 17 'Trichoderma dorotheae GJS_99_202', [17] 18 'Trichoderma dingleyae GJS_99_203', [18] 19 'Trichoderma petersenii GJS_04_164', [19] 20 'Trichoderma petersenii GJS_04_355', [20] 21 'Trichoderma ochroleucum CBS_119502', [21] 22 Trichoderma_viride_PPRI20672, [22] 23 'Trichoderma viride CBS_240_63', [23] 24 'Trichoderma viride CPK_2867', [24] 25 'Trichoderma viride GJS_04_372', [25] 26 'Trichoderma viride CBS_119325', [26] 27 'Trichoderma viride ATCC_28038', [27] 28 'Trichoderma martiale GJS_04_40', [28] 29 Trichoderma_gamsii_PPRI20680, [29] 30 'Trichoderma gamsii GJS_92_60', [30] 31 'Trichoderma gamsii GJS_04_09', [31] 32 'Trichoderma gamsii GJS_05_111', [32] 33 'Trichoderma gamsii UNISS_4_2PDA', [33] 34 Trichoderma_hispanicum_S453, [34] 35 'Trichoderma paraviridescens CBS_119321', [35] 36 'Trichoderma viridescens CBS_433_34', [36] 37 'Trichoderma valdunense CBS_120923', [37] 38 'Trichoderma erinaceus DAOM_237546', [38] 39 'Trichoderma erinaceus DAOM:230019', [39] 40 Trichoderma_atroviride_PPRI20685, [40] 41 'Trichoderma atroviride GJS_98_134', [41] 42 'Trichoderma atroviride GJS_96_200', [42] 43 'Trichoderma atroviride CBS_119499', [43] 44 'Trichoderma atroviride C_T_R_81_50', [44] 45 'Trichoderma stilbohypoxyli DIS_259J', [45] 46 'Trichoderma stilbohypoxyli GJS_96_30a', [46] 47 'Trichoderma strigosum ATCC_28031', [47] 48 'Trichoderma strigosum DAOM_166121', [48] 49 'Trichoderma austrokoningii GJS_99_147', [49] 50 'Trichoderma austrokoningii GJS_99_146', [50] 51 'Trichoderma rogersonii GJS_94_115', [51] 52 'Trichoderma rogersonii GJS_04_158', [52] 53 'Trichoderma minutisporum DAOM_167069'; TREE tree_1 = (((((((((((((((((((16:0.0,17:0.0):0.021276,11:0.030273):0.01778,18:0.041636):0.011318,(14:0.0,15:0.0):0.005016):0.005828,(19:0.004872,20:0.0):0.004835):0.050233,((12:0.012503,13:0.016979):0.018799,21:0.113482):0.017529):0.017677,(((((2:0.0,4:0.009346):0.0,3:0.0):0.015759,1:0.021517):0.076179,(((5:0.004232,7:0.013292):0.005652,6:0.015552):0.014174,8:0.020423):0.025699):0.040211,(9:0.0,10:0.0):0.017481):0.009286):0.058367,37:0.075203):0.032581,(((((23:0.0,24:0.0):0.008094,25:0.0):0.008117,(22:0.017114,26:0.012203):0.0):0.032782,28:0.035994):0.005612,27:0.011212):0.042425):0.004074,((((40:0.0,41:0.0):0.004332,44:0.008676):0.0,43:0.0):0.0,42:0.0):0.108701):0.000038,(((51:0.029714,52:0.025791):0.054485,(49:0.0,50:0.0):0.14637):0.052645,(47:0.0,48:0.0):0.091104):0.075275):0.009197,(38:0.004228,39:0.004112):0.071331):0.005743,(45:0.018376,46:0.008171):0.091467):0.018686,(35:0.042363,36:0.015678):0.043842):0.014639,34:0.052655):0.053821,32:0.0):0.004238,((29:0.0,30:0.0):0.008725,33:0.004249):0.004251):0.004267,31:0.0):0.376766,53:0.376766); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of T.viride tree supp fig 4.nex"') = unord: 1 - 413; END; BEGIN NOTES; ALTTAXNAMES * UNTITLED = EF_Tri_14 Trichoderma_koningii___AF456909 Trichoderma_koningii_T___AY376045 Trichoderma_koningii___DQ307571 EF_Tri_214 Trichoderma_koningiopsis_T___DQ284966 Trichoderma_koningiopsis___DQ289006 Trichoderma_koningiopsis___AF456910 Trichoderma_ovalisporum___DQ307540 Trichoderma_ovalisporum_T___AY376037 Trichoderma_taiwanense_T___DQ284973 Trichoderma_intricatum___EU248630 Trichoderma_intricatum_T___AY376060 Trichoderma_caribbaeum___DQ284976 Trichoderma_caribbaeum_T___DQ284977 Trichoderma_dorotheae___DQ284974 Trichoderma_dorotheae_T___DQ307536 Trichoderma_dingleyae___AY376040 Trichoderma_petersenii___DQ289004 Trichoderma_petersenii_T___DQ284980 Trichoderma_ochroleucum___FJ860659 EF_Tri_66 Trichoderma_viride___AY376052 Trichoderma_viride___FJ860692 Trichoderma_viride___DQ307555 Trichoderma_viride_T___DQ672615 Trichoderma_viride___AY376054 Trichoderma_martiale_T___DQ307534 EF_Tri_156 Trichoderma_gamsii___DQ307529 Trichoderma_gamsii___DQ307541 Trichoderma_gamsii___DQ841722 Trichoderma_gamsii_T___DQ790647_T Trichoderma_hispanicum_T___JN715659 Trichoderma_paraviridescens_T___DQ672610 Trichoderma_viridescens___AY376048 Trichoderma_valdunense_T___FJ860717 Trichoderma_erinaceus___EU280025 Trichoderma_erinaceus_T___AY750880 EF_Tri_219 Trichoderma_atroviride_T___AF456887 Trichoderma_atroviride___AF456882 Trichoderma_atroviride___FJ860611 Trichoderma_atroviride___AF456886 Trichoderma_stilbohypoxyli___GQ862819 Trichoderma_stilbohypoxyli_T___AY376063 Trichoderma_strigosum___JQ425717 Trichoderma_strigosum_T___AY937442 Trichoderma_austrokoningii___DQ307562 Trichoderma_austrokoningii_T___DQ307561 Trichoderma_rogersonii___AY376056 Trichoderma_rogersonii_T___DQ307563 Trichoderma_minutisporum_T_ROOT___AY750883; ALTTAXNAMES Alternative_Naming2 = Trichoderma_koningii_PPRI20670 'Trichoderma koningii CBS_457_96' 'Trichoderma koningii GJS_89_122' 'Trichoderma koningii GJS_00_168_' Trichoderma_koningiopsis_PPRI20683 'Trichoderma koningiopsis GJS_93_20' 'Trichoderma koningiopsis GJS_04_373' 'Trichoderma koningiopsis GJS_95_175' 'Trichoderma ovalisporum Dis_203c' 'Trichoderma ovalisporum Dis_70a' 'Trichoderma taiwanense GJS_95_93' 'Trichoderma intricatum GJS_02_78' 'Trichoderma intricatum GJS_97_88' 'Trichoderma caribbaeum GJS_98_43' 'Trichoderma caribbaeum GJS_97_3' 'Trichoderma dorotheae GJS_99_194' 'Trichoderma dorotheae GJS_99_202' 'Trichoderma dingleyae GJS_99_203' 'Trichoderma petersenii GJS_04_164' 'Trichoderma petersenii GJS_04_355' 'Trichoderma ochroleucum CBS_119502' Trichoderma_viride_PPRI20672 'Trichoderma viride CBS_240_63' 'Trichoderma viride CPK_2867' 'Trichoderma viride GJS_04_372' 'Trichoderma viride CBS_119325' 'Trichoderma viride ATCC_28038' 'Trichoderma martiale GJS_04_40' Trichoderma_gamsii_PPRI20680 'Trichoderma gamsii GJS_92_60' 'Trichoderma gamsii GJS_04_09' 'Trichoderma gamsii GJS_05_111' 'Trichoderma gamsii UNISS_4_2PDA' Trichoderma_hispanicum_S453 'Trichoderma paraviridescens CBS_119321' 'Trichoderma viridescens CBS_433_34' 'Trichoderma valdunense CBS_120923' 'Trichoderma erinaceus DAOM_237546' 'Trichoderma erinaceus DAOM:230019' Trichoderma_atroviride_PPRI20685 'Trichoderma atroviride GJS_98_134' 'Trichoderma atroviride GJS_96_200' 'Trichoderma atroviride CBS_119499' 'Trichoderma atroviride C_T_R_81_50' 'Trichoderma stilbohypoxyli DIS_259J' 'Trichoderma stilbohypoxyli GJS_96_30a' 'Trichoderma strigosum ATCC_28031' 'Trichoderma strigosum DAOM_166121' 'Trichoderma austrokoningii GJS_99_147' 'Trichoderma austrokoningii GJS_99_146' 'Trichoderma rogersonii GJS_94_115' 'Trichoderma rogersonii GJS_04_158' 'Trichoderma minutisporum DAOM_167069'; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of T.viride tree supp fig 4.nex"') = universal: 1 - 413; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of T.viride tree supp fig 4.nex"') = 'Jukes-Cantor': 1 - 413; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1468880872437; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5138400363044263603; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1205620383506869723; mqVersion 304; checksumv 0 3 3147849657 null getNumChars 413 numChars 413 getNumTaxa 53 numTaxa 53 short true bits 15 states 15 sumSquaresStatesOnly 503731.0 sumSquares 503731.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 340; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 958 952; setLocation -7 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5138400363044263603 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5138400363044263603; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.lists.TaxonListArchivedName.TaxonListArchivedName; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 618 880; setLocation -7 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 618 880; setLocation -7 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5138400363044263603 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 962.1468880846845.7374712611636364319; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 618 880; setLocation -7 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1205620383506869723 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 618 880; setLocation -7 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;