#NEXUS [written Tue Jul 19 12:05:00 CAT 2016 by Mesquite version 3.04 (build 725) at Bullseye/192.168.56.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=54; TAXLABELS Trichoderma_atrobrunneum_PPRI20671 'Trichoderma atrobrunneum GJS_05_467' 'Trichoderma atrobrunneum GJS_05_469' 'Trichoderma atrobrunneum Hypo_370' Trichoderma_atrobrunneum_S556 'Trichoderma atrobrunneum GJS_05_100' Trichoderma_pyramidale_S119 Trichoderma_pyramidale_S533 Trichoderma_pyramidale_S573 Trichoderma_pyramidale_S73 Trichoderma_afroharzianum_PPRI20674 'Trichoderma afroharzianum GJS_05_113' Trichoderma_afroharzianum_LESF011 Trichoderma_afroharzianum_LESF542 'Trichoderma afroharzianum GJS_04_186' 'Trichoderma afroharzianum GJS_04_197' Trichoderma_afroharzianum_TRS405 Trichoderma_afroharzianum_TRS563 'Trichoderma afroharzianum GJS_04_193' 'Trichoderma afroharzianum CBS_466_94' Trichoderma_pyramidale_PPRI20684 'Trichoderma guizhouense GJS_07_18' Trichoderma_guizhouense_HGUP0038 Trichoderma_guizhouense_HGUP0039 Trichoderma_guizhouense_S393 Trichoderma_guizhouense_S628 Trichoderma_epimyces_CPK2417 Trichoderma_epimyces_CBS120534 'Trichoderma aggressivum CBS_433_95' 'Trichoderma aggressivum DAOM_222156' Trichoderma_camarunense_PPRI20678 'Trichoderma camerunense GJS_99_230' 'Trichoderma camerunense GJS_99_231' 'Trichoderma rifaii DIS_355B' 'Trichoderma lixii DAOM_233986' 'Trichoderma lixii DAOM_233352' 'Trichoderma rifaii DIS_337F' 'Trichoderma afarasin GJS_99_227' 'Trichoderma afarasin DIS_377A' 'Trichoderma afarasin GJS_06_98' 'Trichoderma afarasin DIS_314F' Trichoderma_simmonsii_S355 Trichoderma_simmonsii_S280 Trichoderma_simmonsii_S297 Trichoderma_sp._PPRI20682 'Trichoderma parepimyces CBS_122769' 'Trichoderma parepimyces CBS_122768' 'Trichoderma pleuroticola GJS_95_81' 'Trichoderma pleuroticola CPK_3196' 'Trichoderma velutinum DAOM_230014' 'Trichoderma velutinum DAOM_230013' 'Trichoderma harzianum CBS_226_95' 'Trichoderma harzianum GJS_99_5' 'Trichoderma harzianum GJS_04_71' ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "T. harzianum supp. fig 2.nex"'; DIMENSIONS NCHAR=469; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Trichoderma_atrobrunneum_PPRI20671 ?????????????????????????????????????????????????GTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTCC-TGCTTCACTCTCACTTCCTCGTCATCATTCAACACGCTTTGTGGCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGT---CCTCATCAATCTCATGGTGCAACTGCGAGCTAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTC?????????????????????????????? 'Trichoderma atrobrunneum GJS_05_467' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTCC-TGCTTCACTCTCACTTCCTAGTCATCATTCAACACGCTTTGTGGCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGT---CCTCATCAATCTCATGGTGCAACTGCGAGCTAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma atrobrunneum GJS_05_469' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTCC-TGCTTCACTCTCACTTCCTAGTCATCATTCAACACGCTTTGTGGCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGT---CCTCATCAATCTCATGGTGCAACTGCGAGCTAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma atrobrunneum Hypo_370' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAAAATTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTCC-TGCTTCACTCTCACTTCCTAGTCATCATTCAACACGCTTTGTGGCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGT---CCTCATCAATCTCATGGTGCAACTGCGAGCTAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_atrobrunneum_S556 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAAAATTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTCC-TGCTTCACTCTCACTTCCTAGTCATCATTCAACACGCTTTGTGGCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGT---CCTCATCAATCTCATGGTGCAACTGCGAGCTAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma atrobrunneum GJS_05_100' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGC-AAATTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTCC-TGCTTCACTCTCACTTCCTCATCATCATTCAACACGCTCTGTGTCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGC---CTTCATCAATCTCATGGTGCAACTGCGAGCTAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_pyramidale_S119 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGC-AAATTTTTTTGCTGCCGTTTGATTTTAGTGGGGTTCTTTGTGCAACCCCACTAGCTCACTGCTTTTTTT-TCTTCAACTCTCACTTCCCAGCCATCATTCAACGTGCTCTGTGTCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGCATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGC---CTTCATCAATCTCATGGTGCAACTGCGAGCTAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGTGCTATCCTCATCATTGC Trichoderma_pyramidale_S533 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAAATTTTTTTGCTGCCGTTTGATTTTAGTGGGGTTCTTTGTGCAACCCCACTAGCTCACTGCTTTTTTT-TCTTCAACTCTCACTTCCCAGCCATCATTCAACGTGCTCTGTGTCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGCATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGC---CTTCATCAATCTCATGGTGCAACTGCGAGCTAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGTGCTATCCTCATCATTGC Trichoderma_pyramidale_S573 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAAATTTTTTTGCTGCCGTTTGATTTTAGTGGGGTTCTTTGTGCAACCCCACTAGCTCACTGCTTTTTTT-TCTTCAACTCTCACTTCCCAGCCATCATTCAACGTGCTCTGTGTCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGCATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGC---CTTCATCAATCTCATGGTGCAACTGCGAGCTAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGTGCTATCCTCATCATTGC Trichoderma_pyramidale_S73 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAAATTTTTTTGCTGCCGTTTGATTTTAGTGGGGTTCTTTGTGCAACCCCACTAGCTCACTGCTTTTTTT-TCTTCAACTCTCACTTCCCAGCCATCATTCAACGTGCTCTGTGTCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGCATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGC---CTTCATCAATCTCATGGTGCAACTGCGAGCTAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGTGCTATCCTCATCATTGC Trichoderma_afroharzianum_PPRI20674 ?????????????????????????????????????????????????GTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTTCCTGCTTTTTCC-TGCTTCACTCTCACTTCCTCGTCATCATTCAACGTGCTCTGCGTCTTGTCATTCAGCGACGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGT---CTTCACTAAGTTCATGCTGCAATTGCGGACCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTC?????????????????????????????? 'Trichoderma afroharzianum GJS_05_113' CCCCGCTTTCCATTACCCCTCCTTTCCAGCGACGCAAATTTTTTTTTCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCCCTGCTTTTTCC-TGCTTCACTCTCACTTCCTCGTCATCATTCAACGTGCTCTGCGTCTTGTCATTCAGCGACGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGT---CTTCACTAAGTTCATGCTGCAATTGCGGACCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_afroharzianum_LESF011 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCCCTGCTTTTTCC-TGCTTCACTCTCACTTCCTCGTCATCATTCAACGTGCTCTGCGTCTTGTCATTCAGCGACGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGT---CTTCACTAAGTTCATGCTGCAATTGCGGACCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_afroharzianum_LESF542 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAACTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCCCTGCTTTTTCC-TGCTTCACTCTCACTTCCTCGTCATCATTCAACGTGCTCTGCGTCTTGTCATTCAGCGACGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGT---CTTCACTAAGTTCATGCTGCAATTGCGGACCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma afroharzianum GJS_04_186' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCCCTGCTTTTTCC-TGCTTCACTCTCACTTCCTCGTCATCATTCAACGTGCTCTGCGTCTTGTCATTCAGCGACGCTAACCACTTTTACATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGT---CTTCACTAAGTTCATGCTGCAATTGCGGACCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma afroharzianum GJS_04_197' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCCCTGCTTTTTCC-TGCTTCACTCTCACTTCCTCGTCATCATTCAACGTGCTCTGCGTCTTGTCATTCAGCGACGCTAACCACTTTTACATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGT---CTTCACTAAGTTCATGCTGCAATTGCGGACCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_afroharzianum_TRS405 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCCCTGCTTTTTCC-TGCTTCACTCTCACTTCCTCGTCATCATTCAACGTGCTCTGCGTCTTGTCATTCAGCGACGCTAACCACTTTTACATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGT---CTTCACTAAGTTCATGCTGCAATTGCGGACCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_afroharzianum_TRS563 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCCCTGCTTTTTCC-TGCTTCACTCTCACTTCCTCGTCATCATTCAACGTGCTCTGCGTCTTGTCATTCAGCGACGCTAACCACTTTTACATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGT---CTTCACTAAGTTCATGCTGCAATTGCGGACCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma afroharzianum GJS_04_193' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCCCTGCTTTTTCC-TGCTTCACCTTCACTTCCTCGTCATCATTCAACGTGCTCTGCGTCTTGTCATTCAGCGACGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATTGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAAGT---CTTCACTAAGTTCATGCTGCAATTGCGGACCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGA??????????????????????????????????????????? 'Trichoderma afroharzianum CBS_466_94' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTCCCTGTCGTTTGGTTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCCCTGCTTTTTCC-TGCTTCACTCTCAGTTCTTCGTCATCATTCAACGTGCTCTGCGTCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAGGT---CTTCACTAAGTTCATGCTGCAATTGCGGACCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTTATCATTGC Trichoderma_pyramidale_PPRI20684 ?????????????????????????????????????????????????GCCGTTTGATTTTAGTGGGGTTCTTTGTGCAACCCCACTAGCTCACTGCTTTTTTTGTGCCTCACTCTCACTTCCCAGGCATCATTCAACGTGCTCTGTGTCTTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATCGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGT---CTTCACGAATCTCATGGTGCAATTGCGGGCCAGTGCTAACATGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTC?????????????????????????????? 'Trichoderma guizhouense GJS_07_18' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGCCGTTTGATTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTTTGTGCTTCA--TTCACTTCCCAGTCATCATTCAACGTGCTCTGTGTCTTGTTATTCAACGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTACTTCATCAACTTCATGCTGCAATTGCAACCCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_guizhouense_HGUP0038 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGCCGTTTGATTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTTTGTGCTTCA--TTCACTTCCCAGTCATCATTCAACGTGCTCTGTGTCTTGTTATTCAACGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTACTTCATCAACTTCATGCTGCAATTGCAACCCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_guizhouense_HGUP0039 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGCCGTTTGATTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTTTGTGCTTCA--TTCACTTCCCAGTCATCATTCAACGTGCTCTGTGTCTTGTTATTCAACGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTACTTCATCAACTTCATGCTGCAATTGCAACCCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_guizhouense_S393 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGCCGTTTGATTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTTTGTGCTTCA--TTCACTTCCCAGTCATCATTCAACGTGCTCTGTGTCTTGTTATTCAACGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTACTTCATCAACTTCATGCTGCAATTGCAACCCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_guizhouense_S628 CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGCCGTTTGATTTTAGTGGGGTTCTCTGTGCAACCCCACTAGCTCACTGCTTTTTTTGTGCTTCACACTCACTTCCAAGTCATCATTCAACGTGCTCTGTGTCTTGTCATTCAACGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTACTTCATCAACTTCATGCTGCAATTGCAACCCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_epimyces_CPK2417 CCCCGCTTTCCGTTACCCCTCCTTTGCAGCGACACAA--TTTTTTTGCTGTCGTTGGGTTTTAGTGGGGTTCCCTGTGCA-CCCCACTAGCTCACTGCTTTTTTTGTGCTTCACTCTCACTGCCCAGCCGTCGTTCAACGTGCTCTG--TCTCGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCCTTCATCATCTTGATGCAGCAATCACGAGCCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_epimyces_CBS120534 CCCCGCTTTCCGTTACCCCTCCTTTGCAGCGACACAA--TTTTTTTGCTGTCGTTGGGTTTTAGTGGGGTTCCCTGTGCA-CCCCACTAGCTCACTGCTTTTTTTGTGCTTCACTCTCACTGCCCAGCCGTCGTTCAACGTGCTCTG--TCTCGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCCTTCATCATCTTGATGCAGCAATCACGAGCCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma aggressivum CBS_433_95' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACACAGATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCCTTGTGCACCCCCACTAGCTCACTGCTTTTTTTGTGCTTCACTATCACTACCCAGCCGTCGTTCAACGTGCTCTGTCTCTCGTCATCCAGTGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCCTTCATCACCCCGATGCAGCAATTACAAGCCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTTATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma aggressivum DAOM_222156' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACACAATTTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTCCTTGTGCACCCCCACTAGCTCACTGCTTTTTTTGTGCTTCACTATCACTACCCAGCCGTCGTTCAACGTGCTCTGTCTCTCGTCATCCAGTGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCCTTCATCACCCCGATGCAGCAATTACAAGCCAGTGCTAACAGGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_camarunense_PPRI20678 ?????????????????????????????????????????????????GTCGTTTGGTTTTAGTGGGGTTTCTTGTGCA-CCCCACTAGCTCACTACTTTTTTTCTGCTTCGCTCTCACTTCCCAGCCATCATTCAACGTGCTCCGTGTCATCACTTTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATCACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTC?????????????????????????????? 'Trichoderma camerunense GJS_99_230' CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTTCTTGTGCA-CCCCACTAGCTCACTACTTTTTTTCTGCTTCGCTCTCACTTCCCAGCCATCATTCAACGTGCTCCGTGTCATCACTTTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATCACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma camerunense GJS_99_231' CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTTCTTGTGCA-CCCCACTAGCTCACTACTTTTTTTCTGCTTCGCTCTCACTTCCCAGCCATCATTCAACGTGCTCCGTGTCATCACTTTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATCACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma rifaii DIS_355B' CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTTCTTGTGCA-CCCCACTAGCTCACTACTTTTTTTCTGCTTCGCTCTCACTTCCCAGCCACCATTCAACGTGCTCTGTGTCATCACTTTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAAGTTCACACAGCGATTACAAGCCGGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma lixii DAOM_233986' CCCCGATTTGCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTGGCTGTCGTTTGGTTTTAGTGGGGTTTCTCGTGCA-CCCCACTAGGTCACTGCTTTTTTTCTGCTTCGCTCTTACTGCCCAGCCATCATTCAACGTGCTCTGCGTCTCCACTTTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma lixii DAOM_233352' CCCCGATTTGCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTGGCTGTCGTTTGGTTTTAGTGGGGTTTCTCGTGCA-CCCCACTAGGTCACTGCTTTTTTTCTGCTTCGCTCTTACTGCCCAGCCATCATTCAACGTGCTCTGCGTCTCCACTTTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGA????????????????????????????????????????????????? 'Trichoderma rifaii DIS_337F' CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAATTTTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTTCTTGTGCA-CCCCACTAGCTCACTACTTGTTTTCTGCTTCGCTCTCACTTCCCAGCCATCATTCAACGTGCTCTGTGTCATCAC------CGATGCTAACCACCTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAGTGCTAACAAGCGATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma afarasin GJS_99_227' CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTTGCTGTTGTTTGGTTTTAGTGGGGTTTCTTGTGCACCCCCACTAACTCACTGCTTGTTTTCTGCTTCGCTCTCACTTCCCAGCCATCATTCAACGTGCTCTGTGTCTCCACTTTCAGCGATGCTAACCGCTTTTCTATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma afarasin DIS_377A' CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAAAATTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTTCTTGTGCACCCCCACTAGCTCACTGCTTTTTTCCTGCTTCGCTCTCACTTCCCGGCCATCATTCAACGTGCTCTGTGTCTCCACTTTCAGCGATGCTAACCGCTTTTCTATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma afarasin GJS_06_98' CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAAAATTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTTCTTGTGCACCCCCACTAGCTCACTGCTTTTTTCCTGCTTCGCTCTCACTTCCCGGCCATCATTCAACGTGCTCTGTGTCTCCACTTTCAGCGATGCTAACCGCTTTTCTATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma afarasin DIS_314F' CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAAAATTTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTTCTTGTGCACCCCCACTAGCTCACTGCTTTTTTCCTGCTTGGCTCTCACTTCCCGGCCATCATTCAACGTGCTCTGTGTCTCCACTTTCAGCGATGCTAACCGCTTTTCTATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCTATCAACTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_simmonsii_S355 CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAAAAATTTTTTGCTGTCGTTTGGTTTTAGTGGGGTTTCTTGTGCA-CCCCACTAGCTCG-----TTTTTTCTGCTTCGCTCTCACTTCCCAGCCATCATTCAACGTATTCTGTGTCTCCACTTTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_simmonsii_S280 CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAAAAAATTTTTGCTGTCGTTTGGTTTTAGTGGGGTTTCTTGTGCA-CCCCACTAGCTCG-----TTTTTTCTGCTTCGCTCTCACTTCCCAGCCATCATTCAACGTATTCTGTGTCTCCACTTTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_simmonsii_S297 CCCCGCTTTGCATTACCCCTCCTTTGCAGCGACGCAAAAATTTTTTGCTGTCGTTTGGTTTAAGTGGGGTTTCTTGTGCA-CCCCACTAGCTCG-----TTTTTTCTGCTTCGCTCTCACTTCCCAGCCATCATTCAACGTATTCTGTGTCTCCACTTTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAATTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC Trichoderma_sp._PPRI20682 ?????????????????????????????????????????????????GTCTTTTGGTTTTAGTGGGGTTTCTTGTGCA-CCCCACTAGCTCACCTGTATTTTTCTGCTTCACTCTCACTTCCCAGCCATCATTCAGCGTGTTCTGTGTCCTGTCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTTCTTCATCAACTTCATGCTTCAATTGCAAGCCAGTGCTAACAGGCAATTCATAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTC?????????????????????????????? 'Trichoderma parepimyces CBS_122769' CCCCGCTTTCCGTTACCCCTCCTTTGCAGCGACGCAAAATTTTTTTGCTGTCGTTTGGGTTGAGTGGGGTTCCCTGTGCA-CCCCACTAGCTCACTGCTTTTTTTGTGCTTCACTCTCACTGCCCAGCCGTCATTCAACGTGCTCTGTCTCTGGTCATTCGGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGTAAGGGCTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCATTCATCACCTTGTTGCCGCAATTGTGAGCCGCTGCTAACAGGCAATTCGCAGACGCCCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGACTGCGCCATTCTCATCATTGC 'Trichoderma parepimyces CBS_122768' CCCCGCTTTCCGTTACCCCTCCTTTGCAGCGGCGCAAAATTTTTTTGCTGTCGTTTGGGTTGAGTGGGGTTCCCTGTGCA-CCCCACTAGCTCACTGCTTTTTTTGTGCTTCACTCTCACTGCCCAGCCGTCATTCAACGTGCTCTGTCTCTGGTCATTTGGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGTAAGGGCTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCATTCATCACCTTGTTGCCGCAATTGTGAGCCGCTGCTAACAGGCAATTCGCAGACGCCCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGACTGCGCCATTCTCATCATTGC 'Trichoderma pleuroticola GJS_95_81' CCCCGCTTTCCGTTACCCCTCCTTTGCAGCGACGCAATTTTTTGTGGCAGCCTTTTGGCTTTGGTGGGGTTTCGTGTGCA-CCCCACTAGCTCACTGCTTTTTTC-TGCTTCACTCTCACTGCCCAGTCATCATTCAACGTGCTCTGTGTCTCGCCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTGCTCCATCATCTTGATGCAGGAATTGCGAGCTGGTGCTAACAGGTAATTCGCAGATGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCCATTCTCATCATTGC 'Trichoderma pleuroticola CPK_3196' CCCCGCTTTCCGTTACCCCTCCTTTGCAGCAACGCAATTTTTTGTAGCAGCCTTTTGGCTTTGGTGGGGTTTCGCGTGCA-CCCCACTAGCTCACTGCTTTTTTC-TGCTTCACTCTCACTGCCCAGTCATCATTCAACGTGCTCTGTGTCTCACCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTGCTCCATCATCTTGATGCAGGAATTGCGAGCTGGTGCTAACAGGTAATTCGCAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCCATTCTCATCATTGC 'Trichoderma velutinum DAOM_230014' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAA-TTTTTTTGCTGTCTTTTGGTTTTAGTGGGGTTCCCTGCGCA-CCCCACTAGCTAACTGC-TGTTCTGTGCTTCA--CTCACTGCCTAGCCAACTTTCAACGTGCTCTGTATTCCTACTTTCAACGATGCTAACCACTTTCTCATCAATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTTATTCATCAACTTGATGCAGCAATTGCAAGCCAGTGCTAACAGATATTTCATAGACGCCCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCCATTCTCATCATTGC 'Trichoderma velutinum DAOM_230013' CCCCGCTTTCCATTACCCCTCCTTTGCAGCGACGCAAA-TTTTTTTGCTGTCTTTTGGTTTTAGTGGGGTTCCCTGCGCA-CCCCACTAGCTAACTGC-TGTTCTGTGCTTCA--CTCACTGCCTAGCCAACTTTCAACGTGCTCTGTATTCCTACTTTCAACGATGCTAACCACTTTCTCATCAATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTTATTCATCAACTTGATGCAGCAATTGCAAGCCAGTGCTAACAGATATTTCATAGACGCCCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCCATTCTCATCATTGC 'Trichoderma harzianum CBS_226_95' CCCCGATTTGCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTGGCTGTCGTTTGGTTTTAGTGGGGTTTCTCGTGC-ACCCCACTAGGTCACTGCTTTTTTTCTGCTTCGCTCTTACTGCCCAGCCATCATTCAACGTGCTCTGCGTCTCATCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAG?????????????????????????????????????????????????? 'Trichoderma harzianum GJS_99_5' CCCCGATTTGCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTGGCTGTCGTTTGGTTTTAGTGGGGTTTCTCGTGC-ACCCCACTAGGTCACTGCTTTTTTTCTGCTTCGCTCTTACTGCCCAGCCATCATTCAACGTGCTCTGCGTCTCATCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC 'Trichoderma harzianum GJS_04_71' CCCCGATTTGCATTACCCCTCCTTTGCAGCGACGCAAATTTTTTTGGCTGTCGTTTGGTTTTAGTGGGGTTTCTCGTGC-ACCCCACTAGGTCACTGCTTTTTTTCTGCTTCGCTCTTACTGCCCAGCCATCATTCAACGTGCTCTGCGTCTCATCATTCAGCGATGCTAACCACTTTTCCATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCTCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCTTTCCATCAACTTCACACAGCGATTACAAGCCAGTGCTAACAAGCAATTCACAGACGCTCCCGGCCACCGTGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCCGATTGCGCTATCCTCATCATTGC ; END; BEGIN TREES; Title 'Trees from "T. harzianum supp. fig 2.nex"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Trichoderma_atrobrunneum_PPRI20671, [1] 2 'Trichoderma atrobrunneum GJS_05_467', [2] 3 'Trichoderma atrobrunneum GJS_05_469', [3] 4 'Trichoderma atrobrunneum Hypo_370', [4] 5 Trichoderma_atrobrunneum_S556, [5] 6 'Trichoderma atrobrunneum GJS_05_100', [6] 7 Trichoderma_pyramidale_S119, [7] 8 Trichoderma_pyramidale_S533, [8] 9 Trichoderma_pyramidale_S573, [9] 10 Trichoderma_pyramidale_S73, [10] 11 Trichoderma_afroharzianum_PPRI20674, [11] 12 'Trichoderma afroharzianum GJS_05_113', [12] 13 Trichoderma_afroharzianum_LESF011, [13] 14 Trichoderma_afroharzianum_LESF542, [14] 15 'Trichoderma afroharzianum GJS_04_186', [15] 16 'Trichoderma afroharzianum GJS_04_197', [16] 17 Trichoderma_afroharzianum_TRS405, [17] 18 Trichoderma_afroharzianum_TRS563, [18] 19 'Trichoderma afroharzianum GJS_04_193', [19] 20 'Trichoderma afroharzianum CBS_466_94', [20] 21 Trichoderma_pyramidale_PPRI20684, [21] 22 'Trichoderma guizhouense GJS_07_18', [22] 23 Trichoderma_guizhouense_HGUP0038, [23] 24 Trichoderma_guizhouense_HGUP0039, [24] 25 Trichoderma_guizhouense_S393, [25] 26 Trichoderma_guizhouense_S628, [26] 27 Trichoderma_epimyces_CPK2417, [27] 28 Trichoderma_epimyces_CBS120534, [28] 29 'Trichoderma aggressivum CBS_433_95', [29] 30 'Trichoderma aggressivum DAOM_222156', [30] 31 Trichoderma_camarunense_PPRI20678, [31] 32 'Trichoderma camerunense GJS_99_230', [32] 33 'Trichoderma camerunense GJS_99_231', [33] 34 'Trichoderma rifaii DIS_355B', [34] 35 'Trichoderma lixii DAOM_233986', [35] 36 'Trichoderma lixii DAOM_233352', [36] 37 'Trichoderma rifaii DIS_337F', [37] 38 'Trichoderma afarasin GJS_99_227', [38] 39 'Trichoderma afarasin DIS_377A', [39] 40 'Trichoderma afarasin GJS_06_98', [40] 41 'Trichoderma afarasin DIS_314F', [41] 42 Trichoderma_simmonsii_S355, [42] 43 Trichoderma_simmonsii_S280, [43] 44 Trichoderma_simmonsii_S297, [44] 45 Trichoderma_sp._PPRI20682, [45] 46 'Trichoderma parepimyces CBS_122769', [46] 47 'Trichoderma parepimyces CBS_122768', [47] 48 'Trichoderma pleuroticola GJS_95_81', [48] 49 'Trichoderma pleuroticola CPK_3196', [49] 50 'Trichoderma velutinum DAOM_230014', [50] 51 'Trichoderma velutinum DAOM_230013', [51] 52 'Trichoderma harzianum CBS_226_95', [52] 53 'Trichoderma harzianum GJS_99_5', [53] 54 'Trichoderma harzianum GJS_04_71'; TREE ML_tree = (50:0.0,51:0.0,(((46:0.0,47:0.005776):0.063083,((29:0.005791,30:0.002812):0.028727,(27:0.0,28:0.0):0.011973):0.011012):0.010685,((48:0.003737,49:0.010959):0.073309,((45:0.040105,((37:0.014936,(34:0.008655,(33:0.0,(32:0.0,31:0.0):0.0):0.005743):0.0):0.006321,((38:0.00872,(40:0.0,(41:0.005712,39:0.0):0.0):0.008584):0.007966,(((54:0.0,(53:0.0,52:0.0):0.0):0.008945,(36:0.0,35:0.0):0.0):0.021259,(44:0.002903,(43:0.002901,42:0.0):0.0):0.017735):0.0):0.002303):0.046702):0.011167,((26:0.003354,((22:0.0,23:0.0):0.0,(24:0.0,25:0.0):0.0):0.005711):0.018604,(((6:0.005662,(1:0.0,((5:0.0,4:0.0):0.002912,(3:0.0,2:0.0):0.002887):0.002926):0.009098):0.022716,(21:0.025177,(9:0.0,(8:0.0,(7:0.0,10:0.0):0.0):0.0):0.026374):0.009662):0.018454,(20:0.017682,((14:0.001454,11:0.003443):0.001444,(13:0.0,((12:0.005842,19:0.006178):0.0,(17:0.0,(15:0.0,(18:0.0,16:0.0):0.0):0.0):0.002913):0.0):0.0):0.006186):0.038342):0.000001):0.008411):0.019768):0.003921):0.096024); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Matrix in file "T. harzianum supp. fig 2.nex"') = unord: 1 - 469; END; BEGIN NOTES; ALTTAXNAMES * UNTITLED = Trichoderma_atrobrunneum_Tri64 Trichoderma_atrobrunneum___FJ463303_ Trichoderma_atrobrunneum___FJ463304_ Trichoderma_atrobrunneum___KJ665364_ Trichoderma_atrobrunneum___KJ665404_ Trichoderma_atrobrunneum___FJ463299_ Trichoderma_pyramidale___KJ665696_ Trichoderma_pyramidale___KJ665697_ Trichoderma_pyramidale___KJ665698_ Trichoderma_pyramidale___KJ665699_T_ Trichoderma_afroharzianum_Tri79 Trichoderma_afroharzianum___FJ463378_ Trichoderma_afroharzianum___KT279009_ Trichoderma_afroharzianum___KT279011_ Trichoderma_afroharzianum___FJ463301_T_ Trichoderma_afroharzianum___FJ463302_ Trichoderma_afroharzianum___KP008841_ Trichoderma_afroharzianum___KP008845_ Trichoderma_afroharzianum___FJ463298_ Trichoderma_afroharzianum___KP008851_ Trichoderma_pyramidale_Tri216 Trichoderma_guizhouense___FJ463390_ Trichoderma_guizhouense___JN215484_T_ Trichoderma_guizhouense___JX089585_ Trichoderma_guizhouense___KJ665506_ Trichoderma_guizhouense___KJ665511_ Trichoderma_epimyces___EU498321_ Trichoderma_epimyces_T___EU498320_ Trichoderma_aggressivum___AF348097_ Trichoderma_aggressivum_T___AF348098_ Trichoderma_camarunense_Tri139 Trichoderma_camerunense___AF348107_T_ Trichoderma_camerunense___AF348108_ Trichoderma_rifaii___FJ463324_T_ Trichoderma_lixii___EF392749_ Trichoderma_lixii___EF392752_ Trichoderma_rifaii___FJ463321_ Trichoderma_afarasin___AF348093_T_ Trichoderma_afarasin___FJ463322_ Trichoderma_afarasin___FJ463327_ Trichoderma_afarasin___FJ463400_ Trichoderma_simmonsii___KJ665715_ Trichoderma_simmonsii___KJ665709_ Trichoderma_simmonsii___KJ665711_ Trichoderma_sp_Tri191 Trichoderma_parepimyces___FJ860664 Trichoderma_parepimyces___FJ860665_ Trichoderma_pleuroticola___AF348102_ Trichoderma_pleuroticola___EU918160_ Trichoderma_velutinum___AY937446_ Trichoderma_velutinum_T___AY937415_ Trichoderma_harzianum___AY605833__modified_ Trichoderma_harzianum___FJ463395__modified_ Trichoderma_harzianum___FJ463396__modified_; ALTTAXNAMES Alternative_Naming2 = Trichoderma_atrobrunneum_PPRI20671 'Trichoderma atrobrunneum GJS_05_467' 'Trichoderma atrobrunneum GJS_05_469' 'Trichoderma atrobrunneum Hypo_370' Trichoderma_atrobrunneum_S556 'Trichoderma atrobrunneum GJS_05_100' Trichoderma_pyramidale_S119 Trichoderma_pyramidale_S533 Trichoderma_pyramidale_S573 Trichoderma_pyramidale_S73 Trichoderma_afroharzianum_PPRI20674 'Trichoderma afroharzianum GJS_05_113' Trichoderma_afroharzianum_LESF011 Trichoderma_afroharzianum_LESF542 'Trichoderma afroharzianum GJS_04_186' 'Trichoderma afroharzianum GJS_04_197' Trichoderma_afroharzianum_TRS405 Trichoderma_afroharzianum_TRS563 'Trichoderma afroharzianum GJS_04_193' 'Trichoderma afroharzianum CBS_466_94' Trichoderma_pyramidale_PPRI20684 'Trichoderma guizhouense GJS_07_18' Trichoderma_guizhouense_HGUP0038 Trichoderma_guizhouense_HGUP0039 Trichoderma_guizhouense_S393 Trichoderma_guizhouense_S628 Trichoderma_epimyces_CPK2417 Trichoderma_epimyces_CBS120534 'Trichoderma aggressivum CBS_433_95' 'Trichoderma aggressivum DAOM_222156' Trichoderma_camarunense_PPRI20678 'Trichoderma camerunense GJS_99_230' 'Trichoderma camerunense GJS_99_231' 'Trichoderma rifaii DIS_355B' 'Trichoderma lixii DAOM_233986' 'Trichoderma lixii DAOM_233352' 'Trichoderma rifaii DIS_337F' 'Trichoderma afarasin GJS_99_227' 'Trichoderma afarasin DIS_377A' 'Trichoderma afarasin GJS_06_98' 'Trichoderma afarasin DIS_314F' Trichoderma_simmonsii_S355 Trichoderma_simmonsii_S280 Trichoderma_simmonsii_S297 Trichoderma_sp._PPRI20682 'Trichoderma parepimyces CBS_122769' 'Trichoderma parepimyces CBS_122768' 'Trichoderma pleuroticola GJS_95_81' 'Trichoderma pleuroticola CPK_3196' 'Trichoderma velutinum DAOM_230014' 'Trichoderma velutinum DAOM_230013' 'Trichoderma harzianum CBS_226_95' 'Trichoderma harzianum GJS_99_5' 'Trichoderma harzianum GJS_04_71'; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Matrix in file "T. harzianum supp. fig 2.nex"') = universal: 1 - 469; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Matrix in file "T. harzianum supp. fig 2.nex"') = 'Jukes-Cantor': 1 - 469; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1468922700967; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5118435082529937496; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7978081763867680341; mqVersion 304; checksumv 0 3 1524899884 null getNumChars 469 numChars 469 getNumTaxa 54 numTaxa 54 short true bits 15 states 15 sumSquaresStatesOnly 577688.0 sumSquares 577688.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 340; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 961; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5118435082529937496 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5118435082529937496; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.lists.TaxonListArchivedName.TaxonListArchivedName; getTable; tell It; columnWidth 1 298; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 889; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 889; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5118435082529937496 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 948.1468918110765.7020770621541514227; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 889; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7978081763867680341 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 889; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;