#NEXUS [written Thu Jul 14 09:22:23 CAT 2016 by Mesquite version 3.04 (build 725) at Bullseye/192.168.56.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=41; TAXLABELS 'Trichoderma virens DIS_162' 'Trichoderma sp GJS_99_17' 'Trichoderma saturnisporopsis TR_175 ' Trichoderma_saturnisporopsis_S19 'Trichoderma novae zelandiae GJS_81_265' 'Trichoderma novae zelandiae GJS_99_113' 'Trichoderma solani GJS_08_81' 'Trichoderma capillare GJS_99_3' 'Trichoderma capillare CPK_885' 'Trichoderma sinense CPK_531' 'Trichoderma konilangbra CPK_132' 'Trichoderma sinense DAOM_230004' 'Trichoderma gillesii GJS_00_72' 'Trichoderma reesei Qm_6a' 'Trichoderma reesei GJS_10_189' 'Trichoderma orientale TUB_F_1023' 'Trichoderma orientale GJS_88_81' 'Trichoderma flagellatum CPK_3522' 'Trichoderma flagellatum CPK_3350' 'Trichoderma konilangbra CPK_133' 'Trichoderma pinnatum GJS_04_100' 'Trichoderma pinnatum GJS_02_120' 'Trichoderma longibrachiatum GJS_07_21' 'Trichoderma aethiopicum PPRC_J11 ' 'Trichoderma sp PPRI_20677' 'Trichoderma longibrachiatum CBS_816_68' 'Trichoderma parareesei TUB_F_430' 'Trichoderma parareesei GJS_04_93' 'Trichoderma gracile GJS_10_263' 'Trichoderma saturnisporum ATCC_28023' 'Trichoderma saturnisporum CPK_1269' 'Trichoderma saturnisporum PPRI_20675' 'Trichoderma new_sp GJS_01_355' 'Trichoderma andinense GJS_90_140' 'Trichoderma pseudokoningii GJS_NS_19' 'Trichoderma pseudokoningii GJS_99_149' 'Trichoderma citrinoviride GJS_90_111' 'Trichoderma citrinoviride CTR_79_290' 'Trichoderma ghanense GJS_04_313' 'Trichoderma ghanense ATCC_28019' 'Trichoderma effusum CPK_254' ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "ML tree of Longi all known spp.nex"'; DIMENSIONS NCHAR=386; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Trichoderma virens DIS_162' CCCCGCTTTCGTTTACCCCTCCTTTGAGCGACGC-AAAATTTTTTGCTGCCTCTGGTTTTTAGTGGGGGTGCACC---AGCAACCCCACCACTACCTCGCTGCTCTTCATCGTCTACCACTTCCCAGTCCTCATTCAACGATCTGTTCTCGTTATTTGCAGCGATGCTAACCACCGTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCTTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTCGTCCCATTCTCCAGCCCCGCAAACCAGTGCTAACCAGGACCTCACAGACG 'Trichoderma sp GJS_99_17' CCCCGCTTTCTCCTACCCCTCCTTTGAGCGACGCAAAATTTTCTTGCTGTCTTTCGGTTTTAAGTGGGGTGCAACTCGGGCAACCCCACCACTGCCTCC-GGCTGCTCTCTACCCATCTCTTCCTCGCCCTCACGTCATCAATTCTGAGCCTTCTGTTCAGCGATGCTAATCATGTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGAAGCCATCGTATCGTCAATCGGACACAGCTCTAACAAACATTTTACAGACG 'Trichoderma saturnisporopsis TR_175 ' CCCCGCTTTCTCCTACCCCTCCTTTGAGCGACGCAAATTTTTCTTGCCGCCTTTCGG-TTTAAGTGGGGTGCAACTCGGGCAACCCCACCACTACCTTC-GGCTGCTCTCTCCCGATCTCTTCCTGGCCCTCACGTCATCAATTCTAAGCGTTCTGTTCAGCGATGCTAACCATGTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGAATCCATCGCGTCGTCAATTTGACACAGCTCTAACAAGTACCTCACAG??? Trichoderma_saturnisporopsis_S19 CCCCGCTTTCTCCTACCCCTCCTTTGAGCGACGCAAATTTTTCTTGCCGCCTTTCGG-TTTAAGTGGGGTGCAACTCGGGCGACCCCACCACTACCTTC-GGCTGCTCTCTCCCGATCTCTTCCTGGCCCTCACGTCATCAATTCTAAGCGTTCTGTTCAGCGATGCTAACCATGTTCCCCTCAACAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGAATCCACCGCGTCGTCAATTCGACACAGCTCTAACAAATACCTCACAG??? 'Trichoderma novae zelandiae GJS_81_265' CCCCGCTTTCTCCTACCCCTCCTTTGAGCGACGCAAAATTTTCTTGCTGCCTTTCCG-TTTAAGTGGGGTGCAACTCGGGCAACCCCACCACTGCCTTC-GGCTGCTCTCTCCCTATCTCTTCCTGGCCCTCACGTCATCAATTCTGAGCGTTCTGTTCAGCGATGCTAATCATGTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGAATCCATCGCATCGTCAATTCGACACAGCTCTAACAAATACCTCGCAGACG 'Trichoderma novae zelandiae GJS_99_113' CCCCGCTTTCTCCTACCCCTCCTTTGAGCGACGCAAAATTTTCTTGCTGCCTTTCCG-TTTAAGTGGGGTGCAACTCGGGCAACCCCACCACTGCCTTC-GGCTGCTCTCTCCCCATCTCTTCCTGGCCCTCACGTCATCAATTCTGAGCGTTCTGTTCAGCGATGCTAACCATGTTTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGAATCCATCGCATCGTCAATTCGACACAGCTCTAACAAATACCTCACAGACG 'Trichoderma solani GJS_08_81' CCCCGCTTTCTCCTACCCCTCCTTTGAGAGGCA-AAATTTTTTTTGCTGCGTTTCGGTTTTAGTGGGGGTGCATCTCGAGCAGCCCCACCGTTGCCTTCCGGCCGCTTGTTCTCCCAGTCACCTTTGCACTCGCGTCATCAATACTCTGCGTTTCCTTGTGCGATGCTAATCATATTCCCCAACACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACTGTCATTGGTATGTTGAATCCATGGCTGCGTCGCTTCGACACAGCACTAACGGTTCCCGCACAGACG 'Trichoderma capillare GJS_99_3' CCCCGCTTTCTCCTACCCCTCC--TGAGCGACGCAAAATTTTTTTGCT--GTTTCAGTTTTAGTGGGGTTGCAGTTCGAGCAACCCCGCTACTGCCGCCTGGCCGCCTGTTCTCTCCGCAATCTCTGGACTCGCGTCTTCAATGCTCAGCGTTTCCTTCAGTAATGCTAATCATTCTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCGATTCGTTGCTGCGTCGTCTCGACACAACACTAACGAGTTCCTCACAGACG 'Trichoderma capillare CPK_885' CCCCGCTTTCTCCTACCCCTCC--TGAGCGACGCAAAAATTTTTTGCT--GTTTCAGTTTTAGTGGGGTTGCAGTTCGAGCAACCCCGCTACTGCCGCCTGGCCGCCTGTTCTCTCCGCAATCTCTGGACTCGCGTCTTCAATGCTCAGCGTTTCCTTCAGTAATGCTAATCATTCTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCGATTCGTTGCTGCGTCGTCTCGACACAACACTAACGAGTTCCTCACAGACG 'Trichoderma sinense CPK_531' CCCCGCTTTCCCTTACCCCTCCTTTGAGCGACGCAAAATTTTTTTGCTGCCTTTCGGTTTTAGTGGGGGTGCACATCGAGCAACCCCACCACTACGCTCTGGCCGCTCCCTCTCC-------CCTTGTCCAGACGACATCAC----CCCCGTTTCGCTCAGCGATGCTAATCATATTCCCGTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGCATTCGTCGCCGCGCCATCACGACACGACGCTAACAAGTGCTTCGCAGACG 'Trichoderma konilangbra CPK_132' ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CCCGACGACATCATCTCTCTTCGTCCCAATCAGCGATGCTAATCATATTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATCGGTATGTTGCAATCTT---AGCGTCATCATGACACAGCACTAACAACAACGTTGCAGACG 'Trichoderma sinense DAOM_230004' CCCCGCTTTCCCTTACCCCTCCTTTGAGCGACGCAAAATTTTTTTGCTGCCTTTCGGTTTTAGTGGGGGTGCACATCGAGCAACCCCACCACTACGCTCTGGCCACTCCCTCTCC-------CCTTGTCCAGACGACATCAC----CCCCGTTTCGCTCAGCGATGCTAATCATATTCCCGTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATTACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGCATTCGTCGCCGCGCCATCACGACACGACGCTAACAAGTGCTTCGCAGACG 'Trichoderma gillesii GJS_00_72' CCCCGCTTTCCCCTACCCCTCCTTTGAGCGACGCAAATTTTTTTTGCTGCCTTTCGGTTTTAGTGGGGGTGCACATCGAGCAACCCCACCACAACCCTCTGGCCGCTCCCTCCCC---------GTGTCCAGACGACATCACCACTCTCCGTTTCGCTCAGCGATGCTAATCATATTCCCGTCAATAGGAAGCCGCCGAACTTGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGCATCCATCGCCGCGCCATCACGACACGACACTAACAAGTGCATCGCAGACG 'Trichoderma reesei Qm_6a' CCCCGCTTTC--CTACCCCTCCTTCGAGCGACGCAAATTTTTTTTGCTGCCTTCGAGTTTTAGTGGGGTCGCACCTC--ACAACCCCACTACTGCTCTCTGGCCGCTCAGTCACC---------------CAACGTCATCAAC---CAGCAGTTTTCTCAGCGATGCTAACCATATTCCCTCGAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGCAGCCATCACTGCGTCGTTAC-ACATCAAACTAACAATGCCCTCACAGACG 'Trichoderma reesei GJS_10_189' CCCCGCTTTC--CTACCCCTCCTTCGAGCGACGCAAATTTTTTTTGCTGCCTTCGAGTTTTAGTGGGGTCGCACCTC--ACAACCCCACTACTGCTCTCTGGCCGCTCAGTCACC---------------CAACGTCATCAAC---CAGCAGTTTTCTCAGCGATGCTAACCATATTCCCTCGAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGCAGCCATCACTGCGTCGTTAC-ACATCAAACTAACAATGCCCTCACAGACG 'Trichoderma orientale TUB_F_1023' CCCCGCTTTC--CTACCCCTCCTTTGGGCGACGCAAATTTTTTTTGTTGCGTTCGGGTTTTAGTGGGGGCGCACCTGCAGCAACCCACTACCTGCTGGCCGACCTCTCTGGTCTCCCATCACATTTGCACACGCGTCATCAC----CAGCAATCTGTGCAGCAATGCTAATCCTTTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGATCCATCGCATCATTGCCACAACAACATGCTAACG-TCCTCTCACAGACG 'Trichoderma orientale GJS_88_81' CCCCGCTTTC--CTACCCCTCCTTTGGGCGACGCAAATTTTTTTTGTTGCGTTCGGGTTTTAGTGGGGGCTCACCTGCAGCAACCCACTACCCGCTGGCCGCCGTCTCTGGTCTCCCAACACATTTGCACACGCGTCATCAC----CAGCAATCTGTGCAGCAATGCTAATCCTTTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGATCCATCGCATCATTGCCACAACAACATGCTAATA-TCCTCTCACAGACG 'Trichoderma flagellatum CPK_3522' CCCCGCTTTCTCCTACCCCTCCTTTGAGCGACGCAAATTTTTCTTGCTGCCTCTCGGTTTTAGTGGGGGTGCACATCGAGCAACCCCACTACTGCCCTCTGCCCTCTCGCTCAGCCCTCTTCCCGTGTCCAGACGACATCGCCTCTCTTCGTTCCGTACAGCGATGCTAATCAGATTCCCTTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGCATCCATCGCCACGTCATTACGACACGCCACTAACAAGTACATCGCAG??? 'Trichoderma flagellatum CPK_3350' CCCCGCTTTCTCCTACCCCTCCTTTGAGCGACGCAAATTTTTCTTGCTGCCTCTCGGTTTTAGTGGGGGTGCACATCGAGCAACCCCACTACTGCCCTCTGCCCTCTCGCTCAGCCCTCTTCCCGTGTCCAGACGACATCGCCTCTCTTCGTTCCGTACAGCGATGCTAATCAGATTCCCTTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGCATCCATCGCCACGTCATTACGACACGCCACTAACAAGTACATCGCAGACG 'Trichoderma konilangbra CPK_133' CCCCGCTTTCACCTACCCCTCCTTTGAGCGACGCAAATTTTTCTTGCTGCCTTCGGGTTTTAGTGGGGATGCACGTCGAGCAACCCCACCAATATCCTCTGGCCGCTCCCTCTTC-------CCGTGTCCAGACGACATCATCTCTCTTCGTCCCAGTCAGCGATGCTAATCATATTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATCGGTATGTTGCAATCTT---AGCGTCATCATGACACAGCACTAACAACAACGTTGCAG??? 'Trichoderma pinnatum GJS_04_100' CCCCGCTTTC--CTACCCCTCCTTTGGGCGACGCAAAAATTTTTTGTTGCGTTCGGGTTTTAGTGGGGATGCACCCCCAGCAAACC-ACTACCCTCTGCCGCCCTCTCTCGTCTCCAACACCTTTGGCGCTTGCGTCATCAAGCTTCAACAGTCTGCGCAGCAATGCTAATCATTTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGATCCCTTGCTGCGTCATCACAACAACATACTAATG-CCCTCTGACAGACG 'Trichoderma pinnatum GJS_02_120' CCCCGCTTTC--CTACCCCTCCTTTGGGCGACGCAAAAAATTTTTGTTGCGTTCGGGTTTTAGTGGGGATGCACCCCCAGCAAACC-ACTACCCTCTGCCGCCCTCTCTCGTCTCCAACACCTTTGGCGCTTGCGTCATCAAGCTTCAACAGTCTGCGCAGCAATGCTAATCATTTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGATCCCTTGCTGCGTCATCACAACAACATACTAATG-CCCTCTGACAGACG 'Trichoderma longibrachiatum GJS_07_21' CCCCGCTTTC--CTACCCCTCCTTTGGGCGACGCAAATTTTTTTTGTTGCGTTCGGGTTTTAGTGGGGATGCACCTCCAGCAAACC-ACTATGCTCTGCCGCCCTCTCTCGTCTGCAACACCTTTGGCGCTTGCGTCATCAACCTTCAACAGTCTGCGCAGCAATGCTAATCATTTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGATCCCGTGCTGCATCATCACAACAACATACTAATG-CCCTCTGACAGACG 'Trichoderma aethiopicum PPRC_J11 ' CCCCGCTTTC--CTACCCCTCCTTTGGGCGACGC-AAATTTTTTTGTTGCGTTCGGGTTTTAGTGGGGATGCACCTCCAGCAAACC-ACTACCCTCTGCCGCCCTCTCTCGTCTCCAACACCTTTGGCGCTTGCGTCATCAACCTTCAACAGTCTGCGCAGCAATGCTAATCATCTTCCCCTCAACAGGAAGCCGCCAAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCAAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGATCCCTTGCTGCGTCATCACGACAACATACTAATG-CCCTCTGACAGACG 'Trichoderma sp PPRI_20677' CCCCGCTTTC--CTACCCCTCCTTTGGGCGACGCAAATTTTTTCTGTTGCGTTCGGGTTTTAGTGGGGGTGCACCTCAAAAAACCA-GCTACCCGCTGCCGCCCTCTTTCGTCCA---ACACTGTTGCACACGCGTCTTCCA----CAGCAGTCTGCGCAGCGATGCTAATCATTCTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGATCCCTTGCTGCATCATCACAACAACATACTAATG-CCCTCTCACAGACG 'Trichoderma longibrachiatum CBS_816_68' CCCCGCTTTC--CTACCCCTCCTTTGGGCGACGCAAATTTTTTTTGTTGCGTTCGGGTTTTAGTGGGGATGCACCTCCAGCAAACC-ACTATCCTCTGCCGCCCTCTCTCGTCTCCAACACCTTTGGCGCTTGCGTCATCAACCTTCAACAGTCTGCGCAGCAATGCTAATCATTTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGATCCCGTGCTGCATCATCACAACAACATACTAATG-CCCTCTGACAGACG 'Trichoderma parareesei TUB_F_430' CCCCGCTTTCTTCTACCCCTC---CGAGCGACGC-AAATTTTTTTGCTGCCTTTGGGTTTTAGTGGGGTTGCA--TCGAGCAACCCCACCAATAC--TCTGGCCGCTTCGGATCCCAGTCACCTCAGCACACGCGTCACCAACACACAG-TCTTTGATCCGCGATGCTAACCATGTTCCCCTCAATAGGAAGCTGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGCAGCCAACATTGCGTCGTTAC-ACGTCAAACTAACGATGCCCTCACAGACG 'Trichoderma parareesei GJS_04_93' CCCCGCTTTCTTCTACCCCTCCTTCGAGCGACGCAAATTTTTTTTGCTGCCTTTGGGTTTTAGTGGGGTTGCA--TCGAGCAACCCCACCACTAC--TCTGGCCGCTTCGGATCCCAGTCACCTCAGCACACGCGTCACCAACACACTG-TTTTTGATCCGCGATGCTAACCATGTTCCCCTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGCAGCCATCATTGCGTCGTTAC-ACGTCAAACTAACAATGCCCTCACAGACG 'Trichoderma gracile GJS_10_263' CCCCGCTTTCTCCTACCCCTCCTTTGAGCGACGCAAATTTTTTTCGCTGCGTTTGGGTTTTAGTGGGGTTGCA--TCGAGCAACCCCACCACTACCTTTTGGCCGCTTGTCTCGACATTCCCCTCTGCACGCGCGTCATCAATTC-CAGCAGTGTGTTCAGCGATGCTAATCATGTTCCCTTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGAATCCATCAA---TTCCTTGACACATGAAACTAACAATGCCCGCACAGACG 'Trichoderma saturnisporum ATCC_28023' CCCCGTTTTCACTTACCCCTCCTTTGAGCGACGCAAAATTTTTTTGTTGGGTTTCGGTTTTAGTGGGGGTGCAGCTCGAGCAACCCCACTACTGCCGTCAACAGTCT------------CGCCTTTGCACTGGCGCCGTCGATATTCGGCGCT----TCAGCGATGCTAACCATCCTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGGATCCGTTGCTGCCTCATCGCGACGCGTCACTAACGGGCCTCTCACAGACG 'Trichoderma saturnisporum CPK_1269' CCCCGCTTTCACTTACCCCTCCTTTGAGCGACGCAAATTTTTTTTGTTGCGTTTCGGTTTTAGTGGGGGTGCAGCTCGAGCAACCCCACTACTGCCGTCAACAGTCT------------CGCCTTTGCACTGGCGCCGTCGATATTCGGCGCT----TCAGCGATGCTAACCATCCTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGGATCCGTTGCTGCCTCATCGCGACGCGTCACTAACGGGCCTCTCACAGACG 'Trichoderma saturnisporum PPRI_20675' CCCCGCTTTCACTTACCCCTCCTTTGAGCGACGCAAATTTTTTTTGCTGCGTTTCGGTTTTAGTGGGGGTGCAGCTCGAGCAACCCCACTACTGCCGTCAACGGTCT------------CGCCTTTGCGCTCGCGCCGTCGATACTCAGCGCT----TCAGCGATGCTAACCATCCTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGGATCCGTTGCTGCCTCATCGCGACTCGTCACTAACGGGCTTCTCACAGACG 'Trichoderma new_sp GJS_01_355' CCCCGCTTTCTCCTACCCCTCCTTTCAGCGACGCAAAAATTTTTTGCTGCCTTTCGGTTTTAGTGGGGGTGCCGCTCGAGCAACCCCACCACTGCCATCATGCCGCT--------CAAGTCCCTTCGCCCTTGCGTCATCGATGCTCAG-CGTTCGTTCAGCGATGCTAATCATGTTCCCCTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCAATCTGGCGCTGCATCGTTTCGACATGACACTAACGCCTACTCCGCAGACG 'Trichoderma andinense GJS_90_140' CCCCGCTTTCCCCTACCCCTCCTTTGGGCGACGCAAATTTTTTTTGCTGCCTTTCGGTATTAGTGGGGGTGCCGCTCGAGCAACCCCACCACTGCCATCATGCCGCT--------CAAGTCCCTTCGCCCTCGCATCATCAATGCTCAG-CGTTCGTTCAGCGATGCTAACCATGTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCACCCCGTTGCTGCATCGTTTCGACATGACACTAACGGCTACTCTGCAGACG 'Trichoderma pseudokoningii GJS_NS_19' CCCCGCTTTGCCTTACCCCTCTTTTGAGCGACGCAAA-TTTTTTTGCTGCTTCTCGATTTTAGTGGGGGTGCATCTCGAGCAACCCCACCACTGCCCTCAGACTGTTTTGCTACGCAGTCTCACTGCACTCCGCGTCATCAATATTGAGGGTTT---TCAGTGATGCTAACCATGATTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGAATCCATCGCTGCCTCAGTACCACACAGCGCTAACAGTTTCCTCGCAGACG 'Trichoderma pseudokoningii GJS_99_149' CCCCGCTTTGCCTTACCCCTCTTTTGAGCGACGCAAA-TTTTTTTGCTGCTTCTCGATTTTAGTGGGGGTGCATCTCGAGCAACCCCACCACTGCCCTCAGACTGTTTTGCTACGCAGTCTCACTGCACTCCGCGTCATCAATATTGAGGGTTT---TCAGTGATGCTAACCATGATTCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTGAATCCATCGCTGCCTCAGTACCACACAGCGCTAACAGTTTCCTCGCAGACG 'Trichoderma citrinoviride GJS_90_111' CCCCGCTTTCCCTTACCCCTCCTTTGAGCGACGCAAATTTTTTTTGCTGCTTCTCAATTTTAGTGGGGGTGCATCTCGAGCAACCCCACCACTGCCTTCAGACCACTTTCTTGCTACAGTCTCACTGCACTCGCGTCATCATCAATTGCAGCTGTTTTTCGCGATGCTAACCATCTTCCCCTTAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGT-GGATCCATTGCCGCGTCTCTCGGACACGGCACTAACGATTCCCGCACAGACG 'Trichoderma citrinoviride CTR_79_290' CCCCGCTTTCCCTTACCCCTCCTTTGAGCGACGCAAATTTTTTTTGCTGCTTCTCAATTTTAGTGGGGGTGCATCTCGAGCAACCCCACCACTGCCTTCAGACCACTCTCTTGCGACATTCTCACTGCACTCGCGTCATCATAAATTTTTTTTTTTTTTCGCGATGCTAACCATCTTCCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCGGATCCATTGCCGCGTCTCTCGGACACGGCACTAACGATCCC-GCACAG??? 'Trichoderma ghanense GJS_04_313' CCCCGCTTTC--CTACCCCTCCTTTGAGCGACGCAAAAATTTTTTGCTACGCGTTGGTTTTAGCGGGGGTGCATCTCGAGCAACCCCACCATTACTCTCTGGCCGCTTGGTCCTCCAACAGTCAACGCACCCGCATCGTCATTCCTCAGCAGTTTCT-CCAGGATGCTAATCAAATTCCACTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTACGTTTGATCCATTGCTGCGTCGTTTCGGCACAA-ACTAACATGTCCCTCATAGACG 'Trichoderma ghanense ATCC_28019' CCCCGCTTTC--CTACCCCTCCTTTGAGCGACGCAAATTTTTTTTGCTACGCGTTGGTTTTAGCGGGGGTGCATCTCGAGCAACCCCACCATTACTCTCTGGCCGCTTGGTCCTCCAACAGTCAACGCACCCGCATCGTCATTCCTCAGCAGTTTCT-CCAGGATGCTAATCAAATTCCACTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTACGTTTGATCCATTGCTGCGTCATTTCGGCACCA-ACTAACATGTCCCTCATAGACG 'Trichoderma effusum CPK_254' CCCCGCTTTCTCCTACCCCTCCTTCGAGCGACGC-AAATTTTTTTGCTGCCTTTC-GTTTTAGTGGGGATGCGGCTCGGGTGACCCCAC---TGCCCTACGACCGCTTGCTGTCTCTACACCTGTCTCAGCT-CGTCATCAATACTCATGCCTAATTTCAATGATGCTAACCATCTTGCCCTCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCTTTCAAGTACGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTTGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTCCATCTTCCGCTTGGTCATCTGTGACAGCCACTAACGATGTTCT--CAGACG ; END; BEGIN TREES; Title 'Trees from "ML tree of Longi all known spp.nex"'; LINK Taxa = Taxa; TRANSLATE [0] 1 'Trichoderma virens DIS_162', [1] 2 'Trichoderma sp GJS_99_17', [2] 3 'Trichoderma saturnisporopsis TR_175 ', [3] 4 Trichoderma_saturnisporopsis_S19, [4] 5 'Trichoderma novae zelandiae GJS_81_265', [5] 6 'Trichoderma novae zelandiae GJS_99_113', [6] 7 'Trichoderma solani GJS_08_81', [7] 8 'Trichoderma capillare GJS_99_3', [8] 9 'Trichoderma capillare CPK_885', [9] 10 'Trichoderma sinense CPK_531', [10] 11 'Trichoderma konilangbra CPK_132', [11] 12 'Trichoderma sinense DAOM_230004', [12] 13 'Trichoderma gillesii GJS_00_72', [13] 14 'Trichoderma reesei Qm_6a', [14] 15 'Trichoderma reesei GJS_10_189', [15] 16 'Trichoderma orientale TUB_F_1023', [16] 17 'Trichoderma orientale GJS_88_81', [17] 18 'Trichoderma flagellatum CPK_3522', [18] 19 'Trichoderma flagellatum CPK_3350', [19] 20 'Trichoderma konilangbra CPK_133', [20] 21 'Trichoderma pinnatum GJS_04_100', [21] 22 'Trichoderma pinnatum GJS_02_120', [22] 23 'Trichoderma longibrachiatum GJS_07_21', [23] 24 'Trichoderma aethiopicum PPRC_J11 ', [24] 25 'Trichoderma sp PPRI_20677', [25] 26 'Trichoderma longibrachiatum CBS_816_68', [26] 27 'Trichoderma parareesei TUB_F_430', [27] 28 'Trichoderma parareesei GJS_04_93', [28] 29 'Trichoderma gracile GJS_10_263', [29] 30 'Trichoderma saturnisporum ATCC_28023', [30] 31 'Trichoderma saturnisporum CPK_1269', [31] 32 'Trichoderma saturnisporum PPRI_20675', [32] 33 'Trichoderma new_sp GJS_01_355', [33] 34 'Trichoderma andinense GJS_90_140', [34] 35 'Trichoderma pseudokoningii GJS_NS_19', [35] 36 'Trichoderma pseudokoningii GJS_99_149', [36] 37 'Trichoderma citrinoviride GJS_90_111', [37] 38 'Trichoderma citrinoviride CTR_79_290', [38] 39 'Trichoderma ghanense GJS_04_313', [39] 40 'Trichoderma ghanense ATCC_28019', [40] 41 'Trichoderma effusum CPK_254'; TREE ML_tree = (35:0.0,36:0.0,(((3:0.006916,4:0.01531):0.021436,(2:0.053806,(6:0.005057,5:0.009589):0.003861):0.002923):0.100082,(((13:0.016392,(10:0.0,12:0.008018):0.039485):0.024091,((18:0.0,19:0.0):0.072771,(11:0.013072,20:0.000001):0.11989):0.01766):0.126067,((33:0.040688,34:0.037333):0.100219,(41:0.335135,((1:0.484822,(37:0.032444,38:0.019183):0.064992):0.131867,(7:0.09421,(((8:0.0,9:0.003605):0.105066,(32:0.009309,(30:0.012833,31:0.0):0.026257):0.12595):0.036379,((39:0.010752,40:0.007985):0.179904,(((16:0.012651,17:0.014771):0.114607,(25:0.073116,((23:0.007496,26:0.0):0.007812,(24:0.015226,(21:0.0,22:0.003706):0.011514):0.007206):0.056486):0.013304):0.1842,(29:0.093791,((27:0.023757,28:0.003643):0.063576,(14:0.0,15:0.0):0.09238):0.048623):0.03511):0.021885):0.022704):0.0):0.016693):0.009025):0.021825):0.009008):0.025046):0.175175); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of Longi all known spp.nex"') = unord: 1 - 386; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of Longi all known spp.nex"') = universal: 1 - 386; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of Longi all known spp.nex"') = 'Jukes-Cantor': 1 - 386; END; BEGIN NOTES; ALTTAXNAMES * UNTITLED = Trichoderma_virens_OUT_DIS_162_FJ463367 'Trichoderma_sp._lone_lineage_JN175581' Trichoderma_saturnisporopsis_TR_175_JN182281 Trichoderma_saturnisporopsis_S_19_JN175580 Trichoderma_novae_zelandiae_T_GJS_81_265_AY937448 Trichoderma_novae_zelandiae_GJS_99_113_JN175582 Trichoderma_solani_GJS_08_81_JN175597 Trichoderma_capillare_GJS_99_3_JN175584 'Trichoderma_capillare_C.P.K._885_JN182277' 'Trichoderma_sinense_C.P.K._531_JN182274' Trichoderma_konilangbra___JN258681 Trichoderma_sinense_AY750889 Trichoderma_gillesii_GJS_00_72_JN175583 Trichoderma_reesei_T_QM6a_Z23012 Trichoderma_reesei_GJS_10_189_JN175602 Trichoderma_orientale_TUB_F_1023_EU401585 'Trichoderma_orientale_T_G.J.S_88_81_EU401581' 'Trichoderma_flagellatum_C.P.K._3523_JQ513360' 'Trichoderma_flagellatum_c.p.k.3350_FJ763163' Trichoderma_konilangbra___JQ513357 Trichoderma_pinnatum_GJS_04_100_JN175571 Trichoderma_pinnatum_GJS_02_120_JN175572 Trichoderma_longibrachiatum_GJS_07_21_JN175569 Trichoderma_aethiopicum_PPRC_J11_EU401614 EF_Tri_120 'Trichoderma_longibrachiatum_CBS_816.68_T___AY865640' Trichoderma_parareesei_TUB_F_430_GQ354351 Trichoderma_parareesei_GJS_04_93_JN175605 Trichoderma_gracile_GJS_10_263_JN175598 Trichoderma_saturnisporum_T_ATCC_28023_T_JN388897 'Trichoderma_saturnisporum_C.P.K._1269_JN182280' 'Trichoderma saturnisporum PPRI_20675' Trichoderma_new_sp__GJS_01_355_JN175586 Trichoderma_andinense_T_GJS_90_140_AY956321 Trichoderma_pseudokoningii_T_GJS_NS_19_JN175588 Trichoderma_pseudokoningii_GJS_99_149_JN175589 Trichoderma_citrinoviride_GJS_90_111_JN175591 Trichoderma_citrinoviride_CTR_79_290_JN175592 Trichoderma_ghanense_GJS_04_313_JN175612 Trichoderma_ghanense_ATCC_28019_JN175606 'Trichoderma_effusum_C.P.K_254_AY937419'; ALTTAXNAMES Alternative_Naming2 = 'Trichoderma virens DIS_162' 'Trichoderma sp GJS_99_17' 'Trichoderma saturnisporopsis TR_175 ' Trichoderma_saturnisporopsis_S19 'Trichoderma novae zelandiae GJS_81_265' 'Trichoderma novae zelandiae GJS_99_113' 'Trichoderma solani GJS_08_81' 'Trichoderma capillare GJS_99_3' 'Trichoderma capillare CPK_885' 'Trichoderma sinense CPK_531' 'Trichoderma konilangbra CPK_132' 'Trichoderma sinense DAOM_230004' 'Trichoderma gillesii GJS_00_72' 'Trichoderma reesei Qm_6a' 'Trichoderma reesei GJS_10_189' 'Trichoderma orientale TUB_F_1023' 'Trichoderma orientale GJS_88_81' 'Trichoderma flagellatum CPK_3522' 'Trichoderma flagellatum CPK_3350' 'Trichoderma konilangbra CPK_133' 'Trichoderma pinnatum GJS_04_100' 'Trichoderma pinnatum GJS_02_120' 'Trichoderma longibrachiatum GJS_07_21' 'Trichoderma aethiopicum PPRC_J11 ' 'Trichoderma sp PPRI_20677' 'Trichoderma longibrachiatum CBS_816_68' 'Trichoderma parareesei TUB_F_430' 'Trichoderma parareesei GJS_04_93' 'Trichoderma gracile GJS_10_263' 'Trichoderma saturnisporum ATCC_28023' 'Trichoderma saturnisporum CPK_1269' 'Trichoderma saturnisporum PPRI_20675' 'Trichoderma new_sp GJS_01_355' 'Trichoderma andinense GJS_90_140' 'Trichoderma pseudokoningii GJS_NS_19' 'Trichoderma pseudokoningii GJS_99_149' 'Trichoderma citrinoviride GJS_90_111' 'Trichoderma citrinoviride CTR_79_290' 'Trichoderma ghanense GJS_04_313' 'Trichoderma ghanense ATCC_28019' 'Trichoderma effusum CPK_254'; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1468480943939; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2563780522580759208; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8155290384882941500; mqVersion 304; checksumv 0 3 3741848693 null getNumChars 386 numChars 386 getNumTaxa 41 numTaxa 41 short true bits 15 states 15 sumSquaresStatesOnly 331944.0 sumSquares 331944.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 340; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1916 961; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2563780522580759208 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2563780522580759208; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.lists.TaxonListArchivedName.TaxonListArchivedName; getTable; tell It; columnWidth 1 338; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1576 889; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1576 889; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2563780522580759208 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 948.1468438272256.6957516862365534272; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1576 889; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.242411,((37:0.032444,38:0.019183):0.064992,((41:0.335135,((33:0.040688,34:0.037333):0.100219,(((35:0.0,36:0.0):0.175175,((3:0.006916,4:0.01531):0.021436,(2:0.053806,(5:0.009589,6:0.005057):0.003861):0.002923):0.100082):0.025046,((13:0.016392,(10:0.0,12:0.008018):0.039485):0.024091,((11:0.013072,20:0.000001):0.11989,(18:0.0,19:0.0):0.072771):0.01766):0.126067):0.009008):0.021825):0.009025,(7:0.09421,(((8:0.0,9:0.003605):0.105066,(32:0.009309,(30:0.012833,31:0.0):0.026257):0.12595):0.036379,((39:0.010752,40:0.007985):0.179904,((29:0.093791,((14:0.0,15:0.0):0.09238,(27:0.023757,28:0.003643):0.063576):0.048623):0.03511,((16:0.012651,17:0.014771):0.114607,(25:0.073116,((23:0.007496,26:0.0):0.007812,(24:0.015226,(21:0.0,22:0.003706):0.011514):0.007206):0.056486):0.013304):0.1842):0.021885):0.022704):0.0):0.016693):0.131867):0.242411);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8155290384882941500 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 252; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1576 889; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;