#NEXUS [written Mon Oct 31 12:53:37 CET 2016 by Mesquite version 3.04 (build 725) at mdk-crou-006.cbs-niob.local/10.136.73.120] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=19; TAXLABELS Eutiarosporella_africana_CBS_133854 Eutiarosporella_africana_CBS_135850 Eutiarosporella_darliae_CBS_118530 Eutiarosporella_darliae_DAR82491 Eutiarosporella_darliae_DAR82492 Eutiarosporella_pseudodarliae_DAR82489 Eutiarosporella_pseudodarliae_DAR82490 Eutiarosporella_sp._CBS_110392 'Eutiarosporella tritici-australis DAR82485' 'Eutiarosporella tritici-australis DAR82486' Eutiarosporella_tritici_CBS_118719 'Eutiarosporella urbis-rosarum CBS 130405' 'Eutiarosporella urbis-rosarum CBS 130406' Marasasiomyces_karoo_CBS_118718 Sakireeta_madreeya_CBS_532.76 Sphaeropsis_porosa_CBS_110496 Sphaeropsis_visci_CBS_100163 Tiarosporella_paludosa_CBS_114650 Tiarosporella_sp._CBS_109699 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1042; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Eutiarosporella_africana_CBS_133854 GGTAAGCCCAT-CTCTT----TGTCC-------------------------TGGCCTTCT-CCACCCGCG-CGCCTGGCCGTGCGGGTGAGGGGCTATTTTTT-GGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTG-----------------------------------GTCGCTC------------------CGACGCACGGCCCGATCCCCTCTCGT-GCGACC------------TCGCGCTAACGCACGCCACCACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????gccggaggaccgtcaaactccagtcagtaaacgtcgcagtctgaaaacaagtttaaataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcaccgtccgcctcaccgcggacgcgcctcgaagacctcggcggcggcgtcaagccctcaagcgtagtagtatctatctcgctttgga-gcgctgggcgtcgcccgccggacgaa????????????????????????????-????????????????????????????????AACCATCTCTGGCGAGCACGGCCTCGATGGCTCCGGTGTGTAAGTATTTTCGCGCCATTGCTCTC-GCCCGACCCCAGATGACTG-ACGGCAGCAGCTACAACGGCACCTCCGACCTCCAGCTGGAGCGCATGAACGTCTACTTCAATGAGGTAGTTTG--TGATGAGCCCCT-AATACTTGGCCGCGAACCTTGTTATCTGACCATCCTTGATAGGCTTCCAACAACAAGTATGTTCCTCGCGCCGTCCTGGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGTGCCGGT Eutiarosporella_africana_CBS_135850 GGTAAGCCCAT-CTCTT----TGTCC-------------------------TGGCCTTCT-CCACCCGCG-CGCCTGGCCGTGCGGGTGAGGGGCTATTTTTT-GGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTG-----------------------------------GTCGCTC------------------CGACGCACGGCCCGATCCCCTCTCGT-GCGACC------------TCGCGCTAACGCACGCCACCACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????gccggaggaccgtcaaactccagtcagtaaacgtcgcagtctgaaaacaagtttaaataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcaccgtccgcctcaccgcggacgcgcctcgaagacctcggcggcggcgtcaagccctcaagcgtagtagtatctatctcgctttgga-gcgctgggcgtcgcccgccggacgaa????????????????????????????-????????????????????????????????AACCATCTCTGGCGAGCACGGCCTCGATGGCTCCGGTGTGTAAGTATTTTCGCGCCATTGCTCTC-GCCCGACCCCAGATGACTG-ACGGCAGCAGCTACAACGGCACCTCCGACCTCCAGCTGGAGCGCATGAACGTCTACTTCAATGAGGTAGTTTG--TGATGAGCCCCT-AATACTTGGCCGCGAACCTTGTTATCTGACCATCCTTGATAGGCTTCCAACAACAAGTATGTTCCTCGCGCCGTCCTGGTCGACCTGGAGCCCGGCACCATGGACGCTGTCCGTGCCGGT Eutiarosporella_darliae_CBS_118530 GGTAAGCCAAT-CTCTC----TGTTCT------------------------------------------------------------------GCTA-TTTTGCCGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTC-----------------------------------GTCGCTC------------------TGACGCACGGCCCGAACCCCTCTCGT-GTCACA------------TCGCGCTAACGCACGCCACCACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????gccggaggaccatcaaactccagtcagtgaacgtcgcagtctgaaaacaagttt-aataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcaccgtccgcct--cggcggacgcgcctcgaagacctcggcggcggcgtcaagccctcaagcgtagtagaatctatctcgctttgga-gcgctgggcgtcgcccgccggacgaa?????GCCAAAACACGCCAGTTGCCGCG-CCCCCCACTGACGCGAATCCAACCCCCAGGCAGACCATCTCTGGCGAGCATGGCCTCGACGGCGCCGGCCTGTGAGTGT----GCCCACTGTCGGCT-GCCCGCCCGCAATCGCTGA-CCCGCTGCAGCTACAACGGCACCTCGGACCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTACGCCA--TCCCCCGCCTCG-ATGGCGA----------CGACGCTTCTGA--CCGCGCTGTAGGCCTCCAACAACAAGTACGTGCCCCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGACGCCGTCCGCGCCGGC Eutiarosporella_darliae_DAR82491 GGTAAGCCAAT-CTCTC----TGTTCT------------------------------------------------------------------GCTATTTTTGCCGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTC-----------------------------------GTCGCTC------------------TGACGCACGGCCCGAACCCCTCTCGT-GTCACG------------TCGTGCTAACGCACGCCACCATAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????GCCGGAGGACCATCAAACTCCAGTCAGTGAACGTCGCAGTCTGAAAACAAGTTT-AATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCACCGTCCGCCT--CGGCGGACGCGCCTCGAAGACCTCGGCGGCGGCGTCAAGCCCTCAAGCGTAGTAGAATCTATCTCGCTTTGGA-GCGCTGGGCGTCGCCCGCCGGACGAA?????GCCAAAACACGCCCGTTGCCGCG-CCCCCCACTGACGCGAATCCAACCCCCAGGCAGACCATCTCTGGCGAGCATGGCCTCGACGGCGCCGGCCTGTGAGTGT----GCCCACTGTCGGCT-GCCCGCCCGCAATCGCTGA-CCCGCTGCAGCTACAACGGCACCTCGGACCTCCAGCTCGAGCGTATGAATGTCTACTTCAACGAGGTACGCCA--TCCCCCGCCTCG-ACGGCGA----------CGACGCTTCTGA--CCGCGCTGCAGGCCTCCAACAACAAGTACGTGCCCCGTGCCGTCCTCGTCGACCTCGAGCCTGGCACCATGGACGCCGTCCGCGCCGGC Eutiarosporella_darliae_DAR82492 GGTAAGCCAAT-CTCTC----TGTTCT------------------------------------------------------------------GCTATTTTTGCCGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTC-----------------------------------GTCGCTC------------------TGACGCACGGCCCGAACCCCTCTCGT-GTCACG------------TCGTGCTAACGCACGCCACCATAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????GCCGGAGGACCATCAAACTCCAGTCAGTGAACGTCGCAGTCTGAAAACAAGTTT-AATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCACCGTCCGCCT--CGGCGGACGCGCCTCGAAGACCTCGGCGGCGGCGTCAAGCCCTCAAGCGTAGTAGAATCTATCTCGCTTTGGA-GCGCTGGGCGTCGCCCGCCGGACGAA?????GCCAAAACACGCCCGTTGCCGCG-CCCCCCACTGACGCGAATCCAACCCCCAGGCAGACCATCTCTGGCGAGCATGGCCTCGACGGCGCCGGCCTGTGAGTGT----GCCCACTGTCGGCT-GCCCGCCCGCAATCGCTGA-CCCGCTGCAGCTACAACGGCACCTCGGACCTCCAGCTCGAGCGTATGAATGTCTACTTCAACGAGGTACGCCA--TCCCCCGCCTCG-ACGGCGA----------CGACGCTTCTGA--CCGCGCTGCAGGCCTCCAACAACAAGTACGTGCCCCGTGCCGTCCTCGTCGACCTCGAGCCTGGCACCATGGACGCCGTCCGCGCCGGC Eutiarosporella_pseudodarliae_DAR82489 GGTAAGCCAAT-CTCTCTTGGTGTGCT------------------------------------------------------------------GCTA-TTTTGCCGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTC-----------------------------------GTCGCTC------------------TGACGCACGGCCCGATCCCCTCTCGT-GCGACC------------GCGCGCTAACGCACGCCACCACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????GCCGGAGGACCCTCAAACTCCAGTCAGTGAACGTCGCAGTCTGAAAACAAGTCT-AATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCCGCTTGGTATTGGGCACCGTCCGCCT--CGGCGGACGCGCCTCGAAGACCTCGGCGGCGGCGTCAAGCCCTCAAGCGTAGTAGAATCTATCTCGCTTTGGAGGCGCTGGGCGTCGCCCGCCGGACGAA?????GCCAAAACACGCCCGTTGCCGCG-CCCTCCACTGACGCGAATCCAACCCCCAGGCAGACCATCTCTGGCGAGCATGGCCTCGACGGCGCCGGCCTGTGAGTGT----GCCCACTGTCGGCC-GCCCGCCCGCAATCGCTGA-CCCGCTGCAGCTACAACGGCACCTCGGACCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTACGCCA--TCCCCCGCCTCG-ACGGCGA----------CGACGCTTCTGA--CCGCGCTGCAGGCCTCCAACAACAAGTACGTGCCCCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGACGCCGTCCGCGCCGGC Eutiarosporella_pseudodarliae_DAR82490 GGTAAGCCAAT-CTCTCTT-GTGTGCT------------------------------------------------------------------GCTA-TTTTGCCGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTC-----------------------------------GTCGCTC------------------TGACGCACGGCCCGATCCCCTCTCGT-GCGACC------------GCGCGCTAACGCACGCCACCACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????GCCGGAGGACCCTCAAACTCCAGTCAGTGAACGTCGCAGTCTGAAAACAAGTCT-AATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCCGCTTGGTATTGGGCACCGTCCGCCT--CGGCGGACGCGCCTCGAAGACCTCGGCGGCGGCGTCAAGCCCTCAAGCGTAGTAGAATCTATCTCGCTTTGGAGGCGCTGGGCGTCGCCCGCCGGACGAA?????GCCAAAACACGCCCGTTGCCGCG-CCCTCCACTGACGCGAATCCAACCCCCAGGCAGACCATCTCTGGCGAGCATGGCCTCGACGGCGCCGGCCTGTGAGTGT----GCCCACTGTCGGCC-GCCCGCCCGCAATCGCTGA-CCCGCTGCAGCTACAACGGCACCTCGGACCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTACGCCA--TCCCCCGCCTCG-ACGGCGA----------CGACGCTTCTGA--CCGCGCTGCAGGCCTCCAACAACAAGTACGTGCCCCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGACGCCGTCCGCGCCGGC Eutiarosporella_sp._CBS_110392 GGTAAGCCCAT-CTCTT----CGTCC-------------------------TGGCCCACT-CCGCCCGCG-CGCCTGGCCGTGCGGGTGAGGGGCTATTTTTT-GGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTG-----------------------------------GTCGCTC------------------cgacgCACGGCCCGATACCCTCTCGT-GcGACC------------TCGCGCTAACGCACgCCaCCACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????gccggaggaccgtcaaaccccagtcagtgaacgtcgcagtctgagaacaagtttaaacaaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcaccgtccgcctccccgcggacgcgcctcgaagacctcggcggcggcgtctggccctcaagcgtagtagtgtctatctcgctttgga-gcgcctggcgtcgcccgccggacgaa?????GCCAAAACACGCCCGTTGCCGCG-CCCCCCACTGACGCGACGACCCCCCACAGGCAGACCATCTCTGGCGAGCATGGCCTCGACGGCGCCGGCCTGTGAGTGT----GCCCGCTGTCGCCT-GCCCC-CCGCAATCGCTGA-CCCGCTGCAGCTACAACGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACGCCA--TCGACCGCCCCG-ATCCCCC----------CGACGCTTCTGA--CGCTGCTGCAGGCCTCCAACAACAAGTACGTGCCCCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGACGCCGTCCGCGCCGGC 'Eutiarosporella tritici-australis DAR82485' GGTAAGCCCAT-CTTTC----CGTTC--------------------------GGCCGTCCGCTGCCTGCG-CGCTGCGTCGCGCAGGTGAGGGGC--TTTTTTGGGTGGTGGGGT-TCG-CGACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTC-----------------------------------GTCGCTC------------------CGGCGCACGGCCCGATT--CCCTCGT-GCGACC------------GCGCGCTAACGCACGCCACCACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????GCCGGAGGACCATCAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAACAAG-TTAAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCACCGTCCGCCT--CCGCGGACGCGCCTCAAAGACATCGGCGGCGGCGTCAAG-CCTCAAGCGTAGTAGTAAAACCCTCGCTTTGGA-GTGCTGGGCGTCGCCCGCCGGACGAA?????GCCAAAACACGCCCGTTGCCGCG-CCCCTCACTAACCCGAATCCACCCCCCAGGCAGACCATCTCTGGCGAGCACGGTCTCGACGGCGCTGGCCTGTGAGTGT----GCTTTCCATCCGCC-GTCCG-CCGCAATCGCTGA-CCCGCTGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTAGGCCA--TCCCCCGCTGCG-CCACCAA-----------CACCCCTCTGA--CCGCGCTGCAGGCCTCCAACAACAAGTACGTGCCCCGTGCCGTCCTTGTCGACCTCGAGCCCGGCACCATGGACGCCGTCCGCGCCGGT 'Eutiarosporella tritici-australis DAR82486' GGTAAGCCCAT-CTTTC----CGTTC--------------------------GGCCGTCCGCTGCCTGCG-CGCTGCGTCGCGCAGGTGAGGGGC--TTTTTTGGGTGGTGGGGT-TCG-CGACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTC-----------------------------------GTCGCTC------------------CGGCGCACGGCCCGACT--TTCTCGT-GCGACC------------GCGCGCTAACGCACGCCACCACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????GCCGGAGGACCATCAAACTCCAGTCAGTAAACGTCTCAGTCTGAAAACAAG-TTAAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCGAAGGGCATGCCTGTTCGAGCGTCATTACAACCCCCAAGCTCTGCTTGGTATTGGGCACCGTCCGCCT--CCGCGGACGCGCCTCAAAGACATCGGCGGCGGCGTCAAG-CCTCAAGCGTAGTAGTAAAACCCTCGCTTTGGA-GTGCTGGGCGTCGCCCGCCGGACGAA?????GCCAAAACACGCCCGTTGCCGCG-CCCCTCACTAACCCGAATCCACCCCCCAGGCAGACCATCTCTGGCGAGCACGGTCTCGACGGCGCTGGCCTGTGAGTGT----GCTTTCCATCCGCC-GTCCG-CCGCAATCGCTGA-CCCGCTGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTAGGCCA--TCCCCCGCTGCG-CCACCAA-----------CACCCCTCTGA--CCGCGCTGCAGGCCTCCAACAACAAGTACGTGCCCCGTGCCGTCCTTGTCGACCTCGAGCCCGGCACCATGGACGCCGTCCGCGCCGGT Eutiarosporella_tritici_CBS_118719 GGTAAGCCCAT-CTTTT----TGTCC-------------------------TGGCCTTCT-CCACCCGCG-CGCCTGGCCGTGCGGGTGAGGGGCTATTTTTT-GGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTG-----------------------------------GTCGCTC------------------CGACGCACGGCCCGATCCCCTCTCGT-GCGACC------------TCGCGCTAACGCACGCCACCACAGGAAGCCGCCGAGCTCGGTAAGGGTTC?????gccggaggaccgtcaaactccagtcagtaaacgtcgcagtctgaaaacaagtttaaataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcaccgtccgcctcaccgcggacgcgcctcgaagacctcggcggcggcgtcaagccctcaagcgtagtagtatctatctcgctttgga-gcgctgggcgtcgcccgccggacgaa?????GCCAAAACACGCCCGTTGCCGCGCCCCCCCACTGACGCGAATCCACCCCACAGGCAGACCATCTCTGGCGAGCATGGCCTCGACGGCGCCGGCCTGTGAGTGT----GCCCACTGTCGCCT-GCCCG-CCGCAATCGCTGA-CCCGCTGCAGCTACAACGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACGCCA--TCTCCCGCCTCG-GCCGCCA----------CGACGCTTCTGA--CGCTGCTGCAGGCCTCCAACAACAAGTACGTGCCCCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGACGCCGTCCGCGCCGGC 'Eutiarosporella urbis-rosarum CBS 130405' GGTAAGCCAAT-CTCTC----TGTTC-------------------------TGGCCTTCTCCCGCCCGCGCCGCCTGGCCGTGCGGGTGAGGGGCTATTTTTTTGGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTC-----------------------------------GTCGCTC------------------CGACGCACGGCCCGATCCCCTCTCGT-GCAACC------------TCGCGCTAACGCAAGCCACCACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????gccggaggaccatcaaactccagtcagtgaacgtcgcaatctgaaaacaagttt-aataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcaccgtccgcct--ccgcggacgcgcctcgaagacctcggcggcggcgtcaagccctcaagcgtagtagaatctatctcgctttgga-gcgctgggcgtcgcccgccggacgaa?????GCCAAAACACGCCCGCTGTCGCG-CCCCCCACTGACGCGAATCCGCTCCGCAGGCAGACCATCTCTGGCGAGCACGGTCTCGACGGCTCCGGCCTGTAAGTGT----GCGCCCTGTCCGCC-GCCCGA-CGCAATCGCTGACCCTGCGCCAGCTACAATGGCACCTCCGACCTTCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACCGTA--TCCCTAGTTTTG-CAAACGCGTCGGCCAGCGCCATCGTCTGA--CCGCGCTGCAGGCCTCCAACAACAAGTATGTTCCCCGTGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGATGCCGTCCGTGCCGGC 'Eutiarosporella urbis-rosarum CBS 130406' GGTAAGCCAAT-CTCTC----TGTTC-------------------------TGGCCTTCTCCCGCCCGCGCCGCCTGGCCGTGCGGGTGAGGGGCTATTTTTTTGGTGGTGGGGT-TCG-CCACGCTAAGCCCCGCTTGGCGCTCGGCAAAAATCCCGCTCTC-----------------------------------GTCGCTC------------------CGACGCACGGCCCGATCCCCTCTCGT-GCAACC------------TCGCGCTAACGCAAGCCACCACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????gccggaggaccatcaaactccagtcagtgaacgtcgcaatctgaaaacaagttt-aataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcaccgtccgcct--ccgcggacgcgcctcgaagacctcggcggcggcgtcaagccctcaagcgtagtagaatctatctcgctttgga-gcgctgggcgtcgcccgccggacgaa?????GCCAAAACACGCCCGCTGTCGCG-CCCCCCACTGACGCGAATCCGCTCCGCAGGCAGACCATCTCTGGCGAGCACGGTCTCGACGGCTCCGGCCTGTAAGTGT----GCGCCCTGTCCGCC-GCCCGA-CGCAATCGCTGACCCTGCGCCAGCTACAATGGCACCTCCGACCTTCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACCGTA--TCCCTAGTTTTG-CAAACGCGTCGGCCAGCGCCATCGTCTGA--CCGCGCTGCAGGCCTCCAACAACAAGTATGTTCCCCGTGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGATGCCGTCCGTGCCGGC Marasasiomyces_karoo_CBS_118718 GGTAAGCGCAC-CCTCG----CG-GCT-------CGCGCGCGCTG------CTGGCGTCG-GCGCCCGATATGCC-CCTCGCTTAGGTGAGGGGCAT-TTTGGTGGTGGTGGGGT-TTGCCAGCGCTAAGCCCCGCTTGGCGCTCGGCAAAAACACCGCACGCCGACTTTTTGCGCCCGGCGTCCGCATGCCGCGCACGGCCCGC-------------------------------CTCGATTCGCTGT-GCGACC------------ACGCGCTAACGCACGCCACCACAGGAAGCCGCCGAGCTCGGTAAGGGTTC?????gccagaggaccatcaaactccagtcagtgaacgtcgcagtctgaaaacaagttt-aataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcaccgtccgcca---cgcggacgcgcctcaaagacctcggcggtggcgtcaagccctcaagcgtagtagaa-atatctcgctttgga-gcgctaggcgtcgcccgccggacgaa?????GCCAAAACACGCCCGCTGTCGCG-CCCCCCACTGACGCGAATCCGCTCCGCAGGCAGACCATCTCTGGCGAGCACGGTCTCGACGGCTCCGGCCTGTAAGTGT----GCGCCCTGTCTGCC-GCCCG-ACGCAATCGCTGA-CCTGCGCCAGCTACAATGGCACCTCCGACCTTCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACCGTA--TCCCTAGTTTTG-CAAACGCGTCGGCCAGCGTCATCGTCTGA--CCGCGCTGCAGGCCTCCAACAACAAGTATGTTCCCCGTGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGATGCCGTCCGTGCCGGC Sakireeta_madreeya_CBS_532.76 GGTAAGAGATA-CTTTG----CCCTCT-------TCCAC-----TT--GTGTCGGCTCCC-TCGTTCGATTTGCCTCTTCGCTTCGGTGAGGGGCAT-TT---TGGTGGTGGGGT-TTGCCCGCGCTAAGCCCCGCTTGGCGCTCGGCAAAAACACCGCACTTGCGTTTTTCGCGAGCGGTGTCAGA-CGCAGCGCACGGCCCTT------------AAAAAAAAAGAGCCCCGTGCTTCACGTCTCGT-ACGACC------------AACAGCTAACGCGCTCCACCACAGGAAGCCGCCGAGCTCGGTAAGGGTTC?????gccagaggaccatcaaactccagtcagtaaacgtcgcagtctgaaaacaagttt-aataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggcattccgaggggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcatcgtccgctccccagcggacgcgcctcaaagacctcggcggtggcgtctagccctcaagcgtagtagaatacacctcgctttgga-gcggttggcgtcgcccgccggacgaa?????GCCAAAACAGACCCGCCTCCGCG-CCACCCACTGACGCGAATCGAAACAACAGGCAAACCATCTCTGGCGAGCACGGCTTGGACGGCTCTGGCCTGTGAGTGT----TCGCTCTGTCCGCC-GTCGG-TCGCGACCGCTGA-CCTATAGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACCGTC--CCACTGATCAGATCCAACCCCTAAAGTGTGGTCACCTTCTGA--ACGCGCAGCAGGCGTCCAACAACAAGTACGTCCCTCGTGCTGTCCTCGTCGATCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGC Sphaeropsis_porosa_CBS_110496 GGTAAGGCGAC-TCCCC----CGCTCC-------TGCACGTGTGGT--GTGGTGCGCTGC-CTGCGCGCGCGGCCTTGTCGCCGTGGTGAGGGGCAT-TTT--TCGTGGTGGGGTGCGGGCGGCGCTAAGCCTCGTTTG--CGTCGGCAAAACGCCCACATCT-GGCTTTTTGCGCCCGGCGTGAGGCCGGCCCTCGCCCCTCGC-----------TAGCGACAGCTGCTCGCACCACTCAACGCTCGT-GCAACC------------AGAGGCTAATGCGCGCCACTACAGGAAGCCGCCGAGCTCGGTAAGGGTTC?????gccagaggaccttcaaactccagtcagtaaacgtcgacgtctgataaacaagtt-aataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggcattccgaggggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcgccgtcctct-----gcggacgcgcctcaaagacctcggcggtggcgtctagccctcaagcgtagtagaaaacacctcgctttgga-gcggttggcgtcgcccgccggacgaa?????GCCAAAACACACCCGCGCCCGCA-CCCCCCGCTGACGAGGCTCGATTCCACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTCT----ACGCTATTCCTGAC-GCGCG-CTGCAATGACTGA-CCCGCAGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTC--TCACTAATTAGA-CAAACACGTAAAGTATGGCAATCTTCTGA--ACGCGCAGCAGGCTTCCAACAACAAGTACGTTCCCCGTGCTGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGC Sphaeropsis_visci_CBS_100163 GGTAAGGCGACTTTCCC----CGCTCC-------TGCAC-----GT--GTGGTGCGCTGC-GTGCGCCCGCGGCCTTGACGCCGTGGTGAGGGGCAT-TTT--TCGCAGTGAGGTGCGGGCGGCGCTAGGCCTCGTTTG--TGTCGGCAAAATGCCCCCATCG-GGCGTTTGGCGCCCGGCGTGAGGCCGACGCTCGCCCCCCTCGCCTGCGAAAAAAATGAAAAATGCTCGCGCCACTAGACGCTTGT-GCGACC------------AGAGGCTAATGCGCGCCACTACAGGAAGCCGCCGAGCTCGGTAAGGGTTC?????gccggaggaccttcaaactccggtcagtaaacgtctacgtctgataaacaagtt-aataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggcattccgaggggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcgccgtcctct-----gcggacgcgcctcgaagacctcggcggtggcgtctagccctcaagcgtagtagaaaacacctcgctttgga-gcggttggcgtcgcccgccggacgaa?????GCCAAACCACACCCGCACCCGCG-CCCCCCGCTGACGACGCTCGATTCTACAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTCT----CCGCTGTTCCTGAC-GCGCG-CTGCAATGACTGA-CCCGCCGCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTC--TCATTAATTAGA-CAAACACGTAAAGCATGGCAATCTTCTGA--ACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCCCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGC Tiarosporella_paludosa_CBS_114650 GGTAAGGACGA-CTCCC----GCTCCCCTCGCCGCACCCGCGTTGTCCGCCCGCCCGCCC-GCCCGCAATTTGCCTCTCCGCCTTTGTGAGGGGCAT-TT---TCGTGGTGGGGT-CGGCCCGCGCTAAACCCCGTTTGCGCGTCGGCWAAATGCCCGCTTTM--GGCCTGTGCGCCCGGCGTCAGGCCGAAACGCGCGCCCCCT------------------CGC--CACGACAAAATCAGACCACTCAGCGGTC------------GCGCGCTAACGCACTGCACTGCAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????gccagaggaccttcaaactccagttagtaaacgtcgacgtctgataaacaagtc-aataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggcattccgaggggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcaccgtccttcc---accggacgcgcctcaaagacctcggcggtggcgtctagccctcaagcgtagtagaacacacctcgctttgga-gcggttggcgtcgcccgccggacgaa?????GCCGAAACAAACCGTCGGCCGCG-CCCCCCGCTGACGCGAATCGACACCGCAGGCAGACCATCTCCGGCGAGCACGGCCTGGACGGCTCCGGCGTGTAAGTCT----GCGCTCCCGTTGCT-GCCTT-GCGCGACCGCTGA-CCTCGTCCAGCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACCGTAGACCCCCCATCACT-CGCGCTCGCAAAGCACGGCAATCTTCTAA--ACGCGCAGCAGGCGTCCAACAACAAGTACGTCCCCCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGACGCC???????????? Tiarosporella_sp._CBS_109699 ???????????-?????----??????????????????GCGCTG------CGGCCGTCC-GCCATCAATTTGGCCCGTCGCTTCGGCGAGGGGCAT-TTTGGTGGTGGTGGGGC-CGACGCGCGCTAAGCCTCGTTTGTGTGTCGGTAAAAGGCCCGCGTCT--GGCTTTTGCGCCCGGTGTCAGACCGAAACGCGCGCCGTCT------------------CGCCACACGATGCAATCCGACCACTCAACAGCTCTTGCACGACCAAGGCGCTAACGCATG-CACTACAGGAAGCCGCCGAGCTCGGCAAGGGTTC?????gccagaggaccttcaaactccagtcagtaaacgtcgacgtctgataaacaagtt-aataaactaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccgaggggcatgcctgttcgagcgtcattacaaccctcaagctctgcttggtattgggcaccgtccttcc---acggggcgcgccttaaagacctcggcggtggcgtctagccctcaagcgtagtagaatacacctcgctttgga-gcggttggcgtcgcccgccggacgaa?????GCCAAAACAAGCCCGCTCCGGCG-CCCCCCGCTGACGCGACTCGACACGACAGGCAGACCATCTCTGGCGAGCACGGCCTGGACGGCTCCGGCGTGTGAGTGT----GCCCTCTTCGCGCTGGCGCT-GCGCAATCGCTGACCCCTCGGCAGCTACAATGGCACCTCCGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACGCTC--GCGCCAATCCCG-CACCCACCTACAGCATGGCAATC-TCTAA--ACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCCCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGACGCCGTCCGCGCCGGG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1042; END; BEGIN PAUP; LOG start = yes append = yes; set autoclose = yes warnreset = no torder = right; OUTGROUP outgroups / only; exclude 1 - . / only; include allsix / only; SET CRITERION = parsimony maxtrees = 1000 increase = no storebrlens = yes outroot = paraphyl; Pset gapmode = newstate; HSEARCH ADDSEQ = random NREPS = 100 SWAP = TBR; Savetrees format = nexus brlens = yes maxdecimals = 0 file = Sandraparsimony.trees; PSCORES 1 / TL = yes CI = yes RI = yes RC = yes HI = yes; Contree ALL / strict = yes treefile = Sandraparsimonycons.tre; Bootstrap nreps = 1000 search = heuristic; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = Sandraparsimonybootstrap.tre; Log stop = yes; END; BEGIN SETS; CHARSET TEF1 = 1 - 318; CHARSET ITS = 324 - 687; CHARSET TUB2 = 693 - 1042; TAXSET outgroups = 16; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1042; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1042; END; BEGIN TREES; Title 'Trees from "Sandraparsimony.trees"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Eutiarosporella_africana_CBS_133854, [1] 2 Eutiarosporella_africana_CBS_135850, [2] 3 Eutiarosporella_darliae_CBS_118530, [3] 4 Eutiarosporella_darliae_DAR82491, [4] 5 Eutiarosporella_darliae_DAR82492, [5] 6 Eutiarosporella_pseudodarliae_DAR82489, [6] 7 Eutiarosporella_pseudodarliae_DAR82490, [7] 8 Eutiarosporella_sp._CBS_110392, [8] 9 'Eutiarosporella tritici-australis DAR82485', [9] 10 'Eutiarosporella tritici-australis DAR82486', [10] 11 Eutiarosporella_tritici_CBS_118719, [11] 12 'Eutiarosporella urbis-rosarum CBS 130405', [12] 13 'Eutiarosporella urbis-rosarum CBS 130406', [13] 14 Marasasiomyces_karoo_CBS_118718, [14] 15 Sakireeta_madreeya_CBS_532.76, [15] 16 Sphaeropsis_porosa_CBS_110496, [16] 17 Sphaeropsis_visci_CBS_100163, [17] 18 Tiarosporella_paludosa_CBS_114650, [18] 19 Tiarosporella_sp._CBS_109699; TREE Fig._8 = (((((((12:21,13:21):109,((1:0.0,2:0.0):68,(((11:7,8:24):13,((3:3,(5:0.0,4:0.0):6):4,(7:0.0,6:1):11):54):12,(9:1,10:3):50):25):124):44,14:109):58,15:128):47,(19:70,18:56):119):9,17:62):0.0,16:0.0); END; BEGIN TREES; Title 'Trees from "Eutiarosporella_ef_its_tub_2.nex.con.tre"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Eutiarosporella_africana_CBS_133854, [1] 2 Eutiarosporella_africana_CBS_135850, [2] 3 Eutiarosporella_darliae_CBS_118530, [3] 4 Eutiarosporella_darliae_DAR82491, [4] 5 Eutiarosporella_darliae_DAR82492, [5] 6 Eutiarosporella_pseudodarliae_DAR82489, [6] 7 Eutiarosporella_pseudodarliae_DAR82490, [7] 8 Eutiarosporella_sp._CBS_110392, [8] 9 'Eutiarosporella tritici-australis DAR82485', [9] 10 'Eutiarosporella tritici-australis DAR82486', [10] 11 Eutiarosporella_tritici_CBS_118719, [11] 12 'Eutiarosporella urbis-rosarum CBS 130405', [12] 13 'Eutiarosporella urbis-rosarum CBS 130406', [13] 14 Marasasiomyces_karoo_CBS_118718, [14] 15 Sakireeta_madreeya_CBS_532.76, [15] 16 Sphaeropsis_porosa_CBS_110496, [16] 17 Sphaeropsis_visci_CBS_100163, [17] 18 Tiarosporella_paludosa_CBS_114650, [18] 19 Tiarosporella_sp._CBS_109699; TREE Fig._8_Unpublished_Bayesian_tree = (16:0.025464,17:0.043658,(((((12:0.003146,13:0.003485)0.83:0.006053,((1:0.004617,2:0.005431)0.98:0.1262,(((11:0.009946,8:0.041127)0.98:0.021557,((3:0.008235,(5:0.003904,4:0.003271)0.98:0.009324)0.98:0.008076,(7:0.004434,6:0.004428)0.98:0.013116)0.98:0.01663)0.89:0.013319,(9:0.005517,10:0.008065)0.99:0.08257)0.97:0.039888)0.97:0.030061)0.97:0.075846,14:0.034792)0.96:0.105801,15:0.11507)0.98:0.085116,(19:0.072859,18:0.104235)0.98:0.075344)0.98:0.1055); END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE [0] 1 Eutiarosporella_africana_CBS_133854, [1] 2 Eutiarosporella_africana_CBS_135850, [2] 3 Eutiarosporella_darliae_CBS_118530, [3] 4 Eutiarosporella_darliae_DAR82491, [4] 5 Eutiarosporella_darliae_DAR82492, [5] 6 Eutiarosporella_pseudodarliae_DAR82489, [6] 7 Eutiarosporella_pseudodarliae_DAR82490, [7] 8 Eutiarosporella_sp._CBS_110392, [8] 9 'Eutiarosporella tritici-australis DAR82485', [9] 10 'Eutiarosporella tritici-australis DAR82486', [10] 11 Eutiarosporella_tritici_CBS_118719, [11] 12 'Eutiarosporella urbis-rosarum CBS 130405', [12] 13 'Eutiarosporella urbis-rosarum CBS 130406', [13] 14 Marasasiomyces_karoo_CBS_118718, [14] 15 Sakireeta_madreeya_CBS_532.76, [15] 16 Sphaeropsis_porosa_CBS_110496, [16] 17 Sphaeropsis_visci_CBS_100163, [17] 18 Tiarosporella_paludosa_CBS_114650, [18] 19 Tiarosporella_sp._CBS_109699; TREE Fig._8_Unpublished_RAxML_tree = (10:0.003912740669696094,(((((4:0.00000095551176432738,5:0.00000095551176432738)100:0.006039236041152637,3:0.004574123171048019)100:0.005391895723628578,(7:0.00000095551176432738,6:0.00000095551176432738)100:0.008851797209875889)100:0.01304060006705423,(11:0.004511145483144835,8:0.033121459066587484)70:0.015592473375570171)55:0.008791957874950131,((2:0.00000095551176432738,1:0.00000095551176432738)100:0.10192985817617418,((14:0.024758063639386593,(15:0.08933267454785007,((18:0.08621728935186301,19:0.0633010104874829)100:0.062498891911168246,(16:0.01383084768072228,17:0.03834195928214555)100:0.0883309726484384)100:0.0777283528412073)100:0.0962521415920829)100:0.0694399551510487,(12:0.00000095551176432738,13:0.00000095551176432738)100:0.0029583921255260924)100:0.024595251893075584)62:0.032062544646359485)100:0.06719023328512372,9:0.0008169228222842333); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1477914818328; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3899913065669862091; tell It; setDefaultOrder 2 3 8 10 9 12 11 5 6 7 4 0 1 13 14 18 17 16 15; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1840756574177655448; mqVersion 304; checksumv 0 3 2808106501 null getNumChars 1042 numChars 1042 getNumTaxa 19 numTaxa 19 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 315539.0 sumSquares -2.3842416715269595E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 411; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1392 1024; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3899913065669862091 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3899913065669862091; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 426; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 981 952; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.sort; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1840756574177655448 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 981 952; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;