NEXUS
[File created by TreeBASE:  1/16/09  15:37:13]
[Matrix accession#: M4047]

BEGIN TAXA;
	TITLE M4047;
	DIMENSIONS  NTAX=18;
	TAXLABELS
		Alligator_mississippiensis	Gavialis_gangeticus	Apteryx_australis	Casuarius_casuarius	Dromaius_novaehollandiae	Rhea_americana	Pterocnemia_pennata	Struthio_camelus	Crypturellus_soui	Eudromia_elegans	Nothoprocta_perdicaria	Tinamus_guttatus	Anas_platyrhynchos	Gallus_gallus	Buteo_jamaicensis	Ciconia_ciconia	Corvus_corone	Smithornis_rufolateralis
	;
END;

BEGIN CHARACTERS;
	TITLE M4047;
	DIMENSIONS NCHAR=1361;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Alligator_mississippiensis       TGCGAGAGATGCCATCTTCAAGGAATTCCATTTCAAGGACTTCAATCGGGTAC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGGCAGGCCTTTGGCTTCATGACCAGAGTAGCCTTACAGGCAGAAAAACTGGACCACCACCCTGAATGGTTCAACGTTTACAACAAGGTAA??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
		Gavialis_gangeticus              TGGGAGAGATGCCATCTTCAAGGAATTCCATTTCAAGGACTTCAATCGGGTAC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGGCAGGCCTTTGGCTTCATGACCAGAGTAGCCTTACAGGCAGAAAAACTGGACCACCACCCTGAATGGTTCAACGTTTACAACAAGGTAC??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
		Apteryx_australis                AGGGAGAGACGCCATCTACAAGGAGTTCCACTTCAAGGACTTCAATCGGGTACAAGCGTCGGTG---CCGAG-TTTTACAATAGGGGAAACCGGGTGCG----CAGAGCGG-------------GGAGT----CCCATTTGCATGCCTCGGGCATAGAAA-ACCCTGCCTGCTTTTCCTAAAATGTAATGGCTGAGCAAGGTAACACAACCAAGACACC-AAAACGCTCAA-CCAG-CACACGG--TTTGTGCGGGGAAAG---TTCTTC---GAAAAG-------AAGAAAACCCACAGAAAT----CCCCAAAGACACAGCACAAACCA-AGCCTTGCATTTGCTTCGTTT-TCTAGAAACATGGGGAGTGAAATTTTTGATAATGGGTTG-----GAAAAAAAAAAAA-------------AA-TCCCAGGATAAGCTGCTCAAGACTAACTTTGCTTCTTAACCCACYGGGCAGGCCTTCGGCTTCATGACCAGAGTGGCTCTACAGGCAGAGAAACTGGATCACCACCCGGAGTGGTTCAATGTGTACAATAAGGTAAGAAACGTGGATGTT-GGGGCGACCGGG--GCRCTTC-AGAGAGCGGTTC-----CCGTTTAGGAGGAACAAAACGGCA--CTGAGAGCAGCAGCAGCAGCTCCTGTTCAGCTCAGCGGCACCTCTTCCTCCCTCAGATGCTAAT-CCCTTTGCGTATCATAGATGGCCTGTGACTATCGCACA-CACGTCCTCTCCTCCCCTCC------TTGTTTTCTGGCCGGCTGAGCAGTAGCTGCTTG-CA-GGCTGCCACCA-GGTTG----CTTATT---AAATCACTACCAGAAGTGGCAG-CAAGGGGAAAAAGGGCCTGGAGG-AA----GAGTTGAGAGGT-GGCACAGC-AGCTGCCGTGACCAAGGGTGG-----CAGTGTCTGCTTGTCRCCAGGATGAGCTGCAGGGAAGSAGAAGAAGTCGCAGAGGTGACAGCCACCAGAAAGGGCTGGGGAA--GCTCTGGTCTGGGCACGGGGAGTGGGAGAGGGGCACAGTGGGAACCRGGAGAAGGGCAGAGTCATTGCACCCACCA-----------------GCCTCYGGAGCTGGATGCAA---------------------TC-AGGCAAAATGCCAGAGCACTGCTCCCCCCCAAAAAAAAGGTCACTAACAAGCCTGGAGAAAGTAATAGCGCTACCTG--CTCCATCGGGTGATAACTGTCT-------GCAGCACT-----GGGGG--AACTCGCTCC-TGTCCTTCCTGCCAGCAACACT---G----------------TCTGTCTGTCTGCT????
		Casuarius_casuarius              CGGCAGAGACGCCATCTGCAAGGAGTTCCACTTCAAGGACTTCAACCGGGTACAGGCGTCGGTG---CCGGC-TTTTACGATAGGGGAGACCTGGCGCG----CAGCGCGG-------------GGAGC----CCCATTTGCGTGGCTCAGGCATAGAAA-GCCCTCCCCGCTTCTCTTGACACGTAATGGCTGAGCAAGGTGACACATCCAAGACACC-AAAACGCTCAA-CCAA-TGCATAG--TTTGTGGGGGGAAAG---GTCTTC---GAAAAG-------AGGAAAACCCGTAGAAAT----CCCCAAAGACACAGCACAAACCA--------------------------AGAAATATGGGGAGTGAAATTATTGATAACAGGTTG----------------------------------------GATAAGCTGTTCAAGACTAACTTTGCTTCTTAACCCACCGGGCAGGCCTTCGGCTTCATGACCAGAGTGGCTCTACAGGCAGAGAAACTGGATCACCACCCCGAGTGGTTCAACGTGTACAACAAGGTAAGAAACGTGGAT-GC-GGGGCGACCGGG--GCTCTTC-AGAGAGCAGTTC-----CCAGTTAGGAGGGACAGAACAGCA--CCAAGAGCGGCAGCAGC---TCCCGCTCAGCTCAGCAGCACCTCTTCCTCCCTCAGATGCTGTT-CCCTTCGCGTATCACGCATGGCCTGTGACTACTGCACA-GACGTCCTCTCCTCCCCTCC------TTGTTTTCTGGCCAGCTGAGCAGTAGCTGCTTG-CA-GGCTGCCACCA-GGTTG----CTTATT---AAATCACTGCCAGAAGTGGCAG-AAAGAGAGAAAAGGGCCTGGAGG-AAGAGCGAGTGGAGAGGT-GGCACGGC-GGCTGCCGCGACCAAGGGTGG-----CAGTGCCCGCCTGTGGCCAGGGCGAGCTGCAGGAAGGG---AGAAGTCACAGAGCTGACAGCCATCGGAAAGGGCTGGG-AA--GCTCTGGTCTGG-CACGGGGAGCGGGAGAGGGGCACACCGGGAACCGGGAGAAGGGTAGGGTCATTGCACC-ACCA-----------------GCCTCCGGAGCTGGATGCAA---------------------CC---------------AGCACTGCTGCCACCCCA-GGGTATTTCACTAACAAGCCTGGAGAAAGCAGTAGCGCTACCTG--CTCCATCGGGTGATAACTGTCT-------GCAGCACC-----GGGGG--AACCAGTTCC-TGTCCCTTCTGCCAGCAACACCT-GG----TCTGTCTGTCTGTCTGTCTGCCTGCTTTAG
		Dromaius_novaehollandiae         CGGCAGAGACGCCATCTACAAGGAGTTCCACTTCAAGGACTTCAACCGGGTACGAGCGTCGGTG---CCRGG-TTTTACGATAGGGGAGCCCCGRCGCG----CAGCGCGG-------------GGAGC----CCCATTTGCGTGGCCCGGGCACAGAAA-GCCCTCCCCGCTTCTCTTGACGCGTAACRGCTGAGCAAGGTGACACATCCAAGACACC-AAARCGCTCAA-CCAA-CGCACGG--TTTGTGGGGGGAAAG---GTCTTC---AAAAAG-------AGGAAAACCCATRGAAAT----CCCCAAATACACAGCACAAACCA--------------------------AGAAATTTGGGGAGTGAGATTATTGATAATGGGTTG----------------------------------------GATAAGCTGTTCAAGACTAACTTTGCTTCTTAACCCACCGGGCAGGCCTTCGGCTTCATGACCAGAGTGGCTCTACAGGCAGAGAAACTGGATCACCACCCCGAGTGGTTCAACGTGTACAACAAGGTAAGRAACGTGGAT-GC-GGGGCGACCGGG--GCTCYTC-AGAGAGCAGGTC-----CCAGTTAGGAGGGACAGACCAGCA--CCAAGAGCGGCAGCAGC---TCCTGCTCAGCTCAGCAGCACCTCTTCCTCCCTCAGATGCTGTT-CCCTTTGCGTGTCACGCATGGCCTGTGACCACGGCGCA-CGCGTCCTCTCCTCCCCTCC------TTGTTTTCTGGCCAGCTGAGCCGTAGCTGCTTG-CA-GGCTGCCACCG-GGTTG----CTTATT---AAATCACTGCCAGAAGTGGCAG-CAAGGGGGAAAAGGGCCCGGAGG-AAGAGCAAGCGGAGAGGT-GGCACAGC-GGCTGC-GTGACCAAGGGTGG-----CAGTGCCCGCTCGTGGCCAGGGCGAGCTGCGGGAAGGGAGGAGAAGTCACAGAGGTGACAGCCATCAGAAGGGGCTGGGGAA--GCTCTGGTCTGG-CACGGGGAGTGGGAGAGGGGCACACCGGGAACCGGGAGAAGGGGAGGGTCGCTGCACC-ACCA-----------------GCCTCCGCAGCTGGATGCCA---------------------CC---------------AGCACTGCTCCCACCCCA-GGAAATTTCACTAACGAGCCTGGAGAAAGCAATAGCACTACCTG--CTCCATGGGGTGATAACTGTCT-------GCGGCACT-----GGGGG--AACCAGTTCC-TGTCCTTTCTGCCAGCAACACCT-GG--------TCTGTCTGTCTGTCT-TCCGC-TTAG
		Rhea_americana                   AGGGAGAGACGCCATCTACAAGGAGTTCCACTTCAAGGACTTCAATCGGGTACAAGCGTCRGTG---CCGAG-TCTTACGATGGGGGAAAYGCGG-GCG----CAGAGCGG-------------GGAGC----CCCCTTTGCATGGCTCGGGCACAGAAAAGCCCTCCCTGCTTCTCTCGAAACGAAATGGCTGAGCAAGGTAACGCAACCGAGACACC-AAAACGCTCAA-CCAA-CGCACGG--TTTGTGTGGGGAGAG---TTCTTC---AAAAGG-------AAGAAGACTCAGAGAAAT----CCCCAAAGATGCAGCACAAACCACA-CTTTGCATCTGCTCTGTTT-TCTAGGAAAATGGAGAGTGAAATTATTGATAATGGGTTGA-----AAAAAAA------------------AA-TCCCAGAATAAGCTGTTCAAGACTAACTTTGCTTCTTAACTCACTGGGCAGGCCTTCGGCTTCATGACCAGAGTAGCCCTACAGGCAGAGAAACTGGATCACCACCCGGAGTGGTTCAACGTGTACAATAAGGTAAGAGATGTGGTT--T--GGG--ACCTG--CTCTCTGA-AGAGTCCCGGTCACTCCCCACTCGGGAGGAAGAGAACAGCA--CCAAGAGC------------------TCAGCTCAGCAGCACCTCTTCCTCCCTCGGACGCTGCT-CCCTTTGCGTATCACAGACGGCCCGTGACTGCAGCATA-CACGCCCTCTCCTCCCCTCC------TTGCTCTCCGGGCAGCTG-----------CTTG-CA-GGCTGCCACCA----------CTTATT---AAATCACTACCAGAAGCGGCAG-CAAGGGAAAAACGGGCCCAGAGG-AAGGGCGAGTTGAGAGGT-GGCCCAGC-GGCTGCCGTGACCAAGGGAGG-----CAGCGCCTGCTTGCGGTCAGCACGAGCTGCAGGGGAGGAGGAGAAGTCACAGTGGCGAGAGCCACCAGAAAGGGCTGGGGAA--GCTCTGGTCTGGACACGGGGAGTGGGAGAGGGGCACACTGGGAATTGGGCGAAGGGCAGAGTCATTGCACC-ACCACCAGCCCCCCAACCCCAGCCTCCGGGGGTGGGTGCAA---------------------CC-AGGCAGAATGCCAGA------------CCCCG-AGAAACGTCCCTAACAAGCCTGGGGAAAGTAATGGCACTACCTG--CTCCATCGGGCAGCAACTGTCT-------GCAGCACT-----GGGGG--AACCTGCTCC-TGTCCCTTCTGCCAGCAACACTT-GG----------------TCTGTCTGTCTGGTTCAG
		Pterocnemia_pennata              AGGGAGAGACGCCATCTACAAGGAGTTCCACTTCAAGGACTTCAATCGGGTACAAGCGTCGGTG---CCGAG-TCTTACGATGGGGGAAACGCGG-GCG----CRGAGCGG-------------GGAGC----CCCCTTTGCATGGCTCGGGCACAGAAAAGCCCTCCCTGCTTCTCTCGAAACGAAATGGCTGAGCAAGGTAACGCAACCGAGACACC-AAAACGCTCAA-CCAA-CGCACGG--TTTGTGTGGGGAGAG---TTCTTC---AAAAGG-------AAGAAGACTCAGAGAAAT----CCCCAAAGATCCAGCACAAACCACA-CTTTGCATCTGCTCTGTTT-TCTAGGAAAATGGAGAGTGAAATTATTGATAATGGGTTGA-----AAAAAAA------------------AA-TCCCAGAATAAGCTGTTCAAGACTAACTTTGCTTCTTAACTCACTGGGCAGGCCTTCGGCTTCATGACCAGAGTAGCCCTACAGGCAGAGAAACTGGATCACCACCCGGAGTGGTTCAAYGTGTACAATAAGGTAAGAGATGTGGTT--T--GGG--ACCTG--CTCTCTGA-AGAGTCCCGGTCACTCCCCACTCGGGAGGAAGAGAACAGCA--CCAAGAGC------------------TCAGCTCAGCAGCACCTCTTCCTCCCTCGGACGCTGCT-CCCTTTGCGTATCGCAGACGGCCCGTGACTGCAGCATA-CATGCCCTCTCCTCCCCTCC------TTGCTCTCTGGGCAGCTG-----------CTTG-CA-GGCTGCCACCA----------CTTATT---AAATCACTACCAGAAGCGGCAG-CAAGGGAAAAACGGGCCCAGGGG-AAGGGCGAGTTGAGAGGT-GGCCCAGC-AGCTGCCGTGACCAAGGGAGG-----CAGCGCCTGCTTGCGGTCAGCACGAGCTGCAGGGGAGG---AGAAGTCACAGTGGCGAGAGCCACCAGAAAGGGCTGGGGAA--GCTCTGGTCTGGACACGGGGAGTGGGAGAGGGGCACACCGGGAACTGGGCGAAGGGTAGAGTCATTGCACC-ACCACCAGCCCCCCTACCCCAGCCTCTGGGGGTGGGTGCAA---------------------CC-AGGCAGAATGCCAGA------------CCCCG-AGAAACGTCCCTAACAAGCCTGGGGAAAGTAATGGCACTACCTG--CTCCATCGGGCAGCAACTGTCT-------GCAGCACT-----GGGGG--AACCTGCTCC-TGTCCCTTCTGCCAGCAACACTT-GG----------------TCTGTACT??????????
		Struthio_camelus                 AGGGAGAGACGCCATCTACAAGGAGTTCCACTTCAAGGACTTCAATCGGGTATGAGCGTCGGTG---CCGAG-TTTTACAATAGGGGAAACCTGGTGCG----CAGAGCGG-------------GGAGT----CCCATTTGCATGGCTCACGCATAGAAA-CCCCTTTCCGTTTTTCTTGAAATTTAATGGCTGAGCAAGGTAACACAATCAAGACACC-AGAACGCTCAA-CCAG-TACACAG--TTTGTGTGGGCAAAG---TTCTTC---GAAAAGA-------GGAAAACCCATAGAAAT----CCCCCAAGACCCAGCACATACCA-AGCCTTGCCTCTGACTGGTTT-TCTAGAAGTATGGGGTATGTAATTATTGGTAACAGGCTGAGCG--AAGAAAGAAAAAAAA---AA-----AA-TCCCAGGATAAGCTGTTCAAAACTAACTTTGCTTCTTCACCCACCGAGCAGGCCTTTGGCTTCATGACCAGAGTGGCTCTACAGGCAGAGAAACTGGATCACCACCCTGAGTGGTTCAATGTGTACAATAAGGTAAGAAACACGCAC-GTGGGGGCCACCAAG--GCTCTTC-AGAGAGCGGTTC-----CCGTTTACGAGGAATAAAACGGCA--CCAAGAGCAGCAGCAGC---TCCTGTTCAGCTCAGTGGCATCTCTTCCTCCCTCAGATGCTGTT-CCCTTTGTGTATCATAGATGGGCTGTGACTATTGCATACCACGTCCTCTCCTCCCCTCC------TCCTTTTCTGGCCAGCTGAGCAGTAGCTGCTTG-CA-GGCCGCCACCA-GGTCG----CTTCTTT--GAATTGCTACCAGGAGTGGCAG-CAAAGTGAGAAAGGGCCTGGAGA-AAGAGCTAGTTGAGAGGT-GGCACAGC-GGCTGCCGTGATCAAGGGTGG-----CAGGGCCTGCTTGCGGCCAGGACGAGCTGCAGGAAAGGTG--AAAGTCACAGAGGTAGCAGCCACCAGAAAGGGCTGGGGAAACATCCTGGTGTGGGGATGGGCAGTGGAAGAGGGGCTCCCTGGGAACTGGGAGAAGGGTAGAGTCATCGCACCCACCA-----------------GCCTCCGGAGCTGGACGCAA---------------------CC-GGGCAAAATGCCARAGCACAGCTCCCACCCTG-AGAAATTTCACTAACAAGCCTGGAGAAAGTAATAACACTACCTG--CTCCAYCGGGTGATAACTGTCT-------GCAGCTCT-----GGGGG--AACCCGTTCC-TGTCCTTTCTGCCAGCAACACTT--G--------TCTGTCTGTCT-TCTGCCTG-TTCAG
		Crypturellus_soui                CGGGCGAGACGCCATCTACAAGGAGTTCCACTTCAAGGACTTCAACCGGGTACGAGTGGCAGCG---CCGGG-TG---CAGCGGTGGCAGGG---GGAAAATACGGGRCAG-------------GGGGT----CCCCTTGGCACAGTTTGGGCATGGAAA-CTCTGCTCTGCTGCTCTTGAAAAGGRGTGACTGAGCAAGGTAACACGGCCAGGACACC-GATGGACKCAA-CCAG-CACAC-GGGTTGGTTTGAGGAGGGTTTCTTCTCTTTGAGAAG---------AAAATCCC-TACAAAT---CCTCCAAAAACATAGCACAAGCCA-AGCCTTGCAGCT-------TT-ACTAGCAATAYGGGGAGGAAAATCAGTGATAACATGTTG-----CGAAGGGGAAAAAAT-----------AA-TCCCAGGATAAGTTGTCCAAGGTTAATTTTGCTTCTTAACGCCTTGGACAGGCCTTCGGCTTCATGACCCGTGTGGCTCTGCAGGCGGAGAAGCTGGACCACCACCCCGAGTGGTTCAATGTGTACAATAAGGTGAGAAACACGGAT-GCAAGGACCACCACGAGGGCAGGGCAGGGA------------CCAAGT--GGGGCACAGCGAGWTA---AGGGAAGAGYCATTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCCACYA-----------------GKCTCC------AGATGCCA---------------------CC-AGGC--ATTG---------CTCCC--ACCCCA-AGAGATGCCACCAACCAGCCTGCAGAGAGTGCCAGGGCTACCTG--CTCCATGGTGTGA--------------------CACG-----GGGGGG--ACCCACTCC-CTCCCTCCCTGCCA---ACGCTT-GG----------------TC--TCTCTCTGCTTTAG
		Eudromia_elegans                 AGGGCGGGACGCCATCTACAAGGAGTTCCACTTCAAGGACTTCAACCGGGTACGGGCGGCACCG---CCGTG------C-GTGGCGGCRGCGGGGGGCGAGAACGGGGCACC--GTGCGA----GGGGT--------------------------------CCYCRCTCCGCTCCTGCGGAGAGGGGGTGGCGGAGCAAGGTGACGC-----------------------------------TG--STGGTTTGGGGTGAG---------------------------GAGAGCCCCGAGAAA---CCCTGCAAAAACAYAGCACAAACCA-AG---------------------------------GGAGCGAAATCATTGATAACAGGTTG----AGAAAGGGGGGGAAAAA----------CA-TCCCAGGAGAGGCTGTTCAAGACTAACTCTGCTTCTCGATGCCCYGCACAGGCCTTCGGCTTCATGACCCGCGTGGCTCTGCAGGCGGAGAAGCTGGACCACCACCCCGAGTGGTTCAACGTGTACAATAAGGTGGGAAAYGCGGAT-RCGGGGATCCCCCCGGCGCTCCCC-AGGGCGCAGCTC-----CCCTCGAGCGGGGACAGAACCGCC--CCACGAGCAGCAGCAGC---------------------------TTCTT-------------------------------------------------------------------------------------------------------------------------------------------CTTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG
		Nothoprocta_perdicaria           GGGGCGAGACGCCATCTACAAGGAGTTCCACTTCAAGGACTTCAACCGGGTATGGGCAGCATCG---CCAAG-CT---CAGCGGTGGGGGCAAGG----AAAACATGGCATGATGTGTGTGGGGGGGGT----CCCTTTTGCATGGCTCGGGCATAGAAA-TCCTGCTCYGTTTCCCTTGGARGGGGATGGTTGAGCAAGGTAACACTGCTGGGACACC-AAAGGACTCGA-CCAG-CACA-TGGTTTGGTTTGAGTGGAG--TCTCTTCT---GAG---------AAGAAAACCCTGAGAAAT---CCTCCAAAAGC--AGCAAAAACCT-AGCCTTGCATCTGCTTTACTT-CCTAGCAATACCAGGAGGGAAATCACCGATAACAGATTG-----AAAAAAAAAAAAAA--TCGAA-GAA-TAAGCT-AGACAAA---GTTCAGGACTAACTTTTCTTCTTAATGCCCTGGACAGGCCTTTGGCTTCATGACCCGAGTGGCTCTGCAGGCAGAGAAGCTGGACCACCACCCCGAGTGGTTCAATGTGTACAATAAGGTGAGAAATGTGGAT-GTGGGGACCATCGGG--GCTCTTC-AGGGTGCAGCTC-----CCATTCAGCAGAGATGGAAAAGCC--CTGAGAGCAGCAGCAGC-------------------------TTTTCCTCTCA--GATGCTCTT-CCCTTTGCATATTGCAGGTGGCTGGTGACTACTGCACA-CAGGTCCTCTCCTCCCTTCCG-------GCTTTCTGGCCAGCT---------CAACTTG-CA-GGCTGCCAACA-GGTCA----CTT------AAGTCACTACCAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCTGGGGAA--GCTCTAGTTTGGGTACAGAGCATAGAAGTGGGGCACAGTG-AGAT------AAGGGAAGAGTCATTGCCCCCACCA-----------------GGCTCC------AGCTGCCA---------------------CC-AGGC--ATTG---------CTCCC--ACCTT---GAGATGCCACCAACAAGCCTGCAGAAAGTGACAGCACTACCTG--CTCCATGGTGTGACAGCTGCCATGGGGGAACTGCACA-----GGGAG--AACCCACTCC-CATCCTTCCTGCCAGCAACACTT-GCTC------------------TCTGTCTGCCTTAG
		Tinamus_guttatus                 AGGGCGAGACGCCATCTACAAGGAGTTCCACTTCAAGGACTTCAATCGGGTACAAGCGGCATTG---CCGAG-TT---CAGTGGTGGCAGGCAGTGGGGAAAACATGGCATGAG----------GGGGT----TCCCTTTGCATGGCTCGGGCACAGAAA-CCCTGCTCTGCTTCTCTTGAAAGCAGATGACTGAGCAAGGTAACACCACCGGGACACC-AAAGGACTCAA-CCAG-CACA-TGGGTTGGTTTGAGTGGGGTTTCTTCTCTT--GGGGT-TTTCTT-------CTCAAAGAAAT---CCTCCAAAAACACAGCACAAACCA-AGCCTTGGAGCTGCTTCACTT-GCTAGCAATACAGGGAGGAAAATCATTGATAACGGGCCAC-----AAAGGGAAAAAAA------------TAATCCCAGGATAAGTTGTTCAAGACTAACTTTGCTTCTTAACACCCTGGACAGGCCTTCGGCTTCATGACCCGCGTGGCTCTGCAGGCAGAGAAGCTGGACCACCACCCCGAGTGGTTCAACGTGTACAATAAGGTAAGAAACATGGAT-GCAGGGATCACTGGGAGGGTTCTC-CCGTCGCAGCTC-----CCATTTAGCAGGAACAGAAGAGCC--TCAAGAGCAGCAGTAGC-------------------------TTTTCCTCCCATGGATACCCTT-CCATCTGCATATTACAGGTGGCTAGTGGCTATTGCACA-CAGGTCCTCTCCTCCCGTC--------------CTGGCCAGCT---------CAGCTGG-CAGGGCTGCCACCA-GGCCA----TTTTTCT--AAATCACTACCAGAC------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCTGGGGAA--GCTCTGGTTTGGATAYAGGGGGTGCAAGTGGGGCAGAGTG-AAAT------AACGGAAGAGTCATTACCCCCACCA-----------------GGCTCC------AGATGCCA---------------------CC-AGGC--ATTG---------CTCCC--ACCCCC-AGAGATGCCACCAACAAGCCTGCAGAAAGTGACAGGGCTACCTG--CTCCATGGTGTGACAACTGCCT-------GGGACACAGAGGTAGGGG---ACCCACTCT-CTCCCTTCCTGCCA---ACACTT-GG----------------TC--TCTGTCTGCTTTAG
		Anas_platyrhynchos               AGGCAGAGATGCCATCTTCAAGGAGTTCCACTTCAAGGACTTCAACCGGGTACGAGCATCGCTGGGACCGAGTTTTTACAGTGCTGGAGACCTGGTTTG----CAGAGCTG-------------GGAGT----CCCACCTGCAGGGCTCGGCCACAGTAA-CACYTCC--RTTTTCCCAAAAACACAATGGCTGAGCAAGATAACCTACACAAGACACC-AAAGCCCTCAG-CCAGGCACCATG--CTTGCCTGGGAAAAG---ATCCCC---AAAAAG-------AGGGAGACCCATACAAAA-CCCCAACAAAGATACAGAACATTCCA-GGTCTTGGATTTGCCTGGATT-CCTAGAAACATGGGGTATAAAATTAATAGCAATGGGGTG------AACAAA------------AACG---TA-TCAGAAGGTAAATGGTCCAGAGCTAACTTTTCTTCTTACTCCCCTGGGCAGGCCTTTGGCTTCATGACCAGAGTGGCTCTACAGGCAGAAAAACTGGATCACCACCCGGAGTGGTTCAACGTCTACAATAAGGTAAGGAACAAGGATGACAGG---AA--CAG-AGCTCTTY-GGGGAGCAGATC-----CCATTTGTGAGGCATAAAATAGCA---------------TAAG---TCCCAGGCAGATGAGCAGGA---CCTCTTCCCTTGG----------------CAYAGCACAGGCAGCCTGCAGCCATCACCTA-CAGCCCCTTTCTTCCCST-------TTTGTTT-CTGCCCAGCTGAGCA---------------AGCTGGCACCAGAGTTGGTGGCTTTTTG--AGGTCAGTACCAGAAGCAGCAGGCAAGGGG-AARAGYTTCTKGATR-----GTGAGTTGAAA----TGCACAGCTGGCTGCCACAACCAGTGCAGGGACAGCAGTCACTGCTTGTGGCCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGG-AGAAAA-CC-ATGTGAAAWGCCTCAACACCTCCCCAACCCCA-AGAAATTTTACTAACGAG--TGCAGAAAGYGATAGCACTACCTG--CCTCATCAGATGCGAGCTGCCT-------GCAGCACT-----GGGGG--AACCTGTTCC-TGCTCTTTCTGCCA------CTC-AGTCG--------------CT--CTGTCTGCTTTAG
		Gallus_gallus                    AGGAAGAGATGCCATCTTCAAAGAGTTCCACTTCAAGGACTTCAACCGGGTATGAGCATTGGTGATACCAAG-TTTGACAGCATGGAAAACCTATTTTA----CAGAGCAG-------------GGAGC----CCCACCTGCATGGCTCAGCCACATAAA-CCCCTC----TTTTTCCTAAAACATGATGACCAAGCAAGATAATCTACCCAAGACACC-AAAGTCCTTAATCCAG-CACACAG--TTTGTCAGGGAAAAG---TTCCCC---AAGAA----------GAAGACCCATAGAAAA-GCCCAACAAGGATACAGAATATCCCATGTTCTTGCATTTGCCTAGATC-CCTACAAACGCAGGGTGTAAAATTAATAGTAAAGGGGTG-------AAAAG-----------CAATA---TA-GCACAGGATAAGTAGTTCAGAGCTAACTTTTCTTTTTATTCCACCGAGCAGGCCTTTGGCTTCATGACCAGAGTGGCTCTGCAAGCAGAAAAACTGGATCACCACCCTGAATGGTTCAACGTGTATAATAAGGTAAGAAGCGTGGATGGCGGGGGCAA-TTGG-AGCTCTTC-AGGGAGCCAAAC-----CCATTTGTCAGGCATAAAACAGCGCTCT-----GAGCAGCAAG---TCCTGGTCAGATCAGCAGAA---CTTCTTCCCTTGGATGCTGTT-CCCTTGGCACACCACAGATAGCCTATAGCTATGAGCCA-CAAATCTTCACCTCCCCC----TTTTTT-----CTGCCCAGCTAGGCAGTAGCTATGGG-TG-TGCTAGCACCAGGGTTG----CTTTTTT--AGGTCAGTCCCAGAAGTAGCAG-CAAGGGG-AAAAGCTTCTGGAGA-AA-GG-GAGTTGAAAGGCAGGCACAGCTAGCTGCTACGAACAATGCAATGGTAGCAGTCACTGCTTGTGGCCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-AAAAAT-CCAAGGCAAAATGCCTCAACTCCTCTCCCATCCCA-GTAAATTTTGCTAACCAGTTTGGAGAAAGTAGTAGTGCTACCTG--CCTGACCAGATGCAATCAGTT---------GAGCAGT-----GGGGG--AATGTGCTCC-TGTGCTGTCTGCCAGCAGCACTCT-----------------GTCTTTCTGTCCGGTTTAG
		Buteo_jamaicensis                AGGCAGAGATGCCATCTTCAAAGAGTTCCACTTCAAGGACTTCAACCGGGTATGAGCATCAGTGGTACAGAG-TTTTACAAAGCGGGAGACCTGGTTTG----CACAGCAG-------------GGAGTCAGTCCCATGTGCAAGGCTCAGCCAAAGAAA-CCCATCCRTGTTTCTACTGAAATGTAATGGCTGAGCAAGATAACCTGCTCAAGACACC-AAAGTGCTTGACCCAG-CACACAG--TTTGTCTGGGAAAAG---CTCCCC---AAAAAG-------AGGAGAACCCATAGAAAA-GCCAAACAAAGATACAGAACATCTCA-GGCCTTGCATTTGGTTGGGTTACCTAGAAACATGCAGTGTAAAATTAATAGTAATGGGGTG-------AAAAA-----------CAGTA------TTGCAGGGTAAGCAATTCAGAGCTAACTTTTCTTCTTACTCCCCTGGGCAGGCCTTTGGCTTCATGACCAGAGTGGCTCTACAGGCAGAAAAACTGGATCACCACCCTGAATGGTTCAATGTGTACAATAAGGTAAGAAACAGGGATGGTGGGGGCAAA-CAG-AGCTCTTC-AGGGTGCAGATC-----CCTTTTTTGAGGCATAAACCACCA-----------GCAGCAAG---TCCTGTTCAGATCAGCAGGA---CTTCTTGCCTC--ATGCTATT-CCCTTGGCATACCACAGGCAGCCTACAGCTATTGCTTA-CAGATCCTTTCCTCCTCC---TTTTTTGAC---CTGTCCGGCTCAGCAGTAGCTGCCTG-TA-GGCCAGCACCAGGGTTG----CTTTTTTT-AAATCAGTGTCAGAAGTAGCAG-CAAGGCA-AAAAACTTCTGGAGA-AAGAGYGAGTTGAAAAGTGGGCACAGCCAGCTGCTGTGACCAAGGCAGGGGTGGCAGTGGCAGCCTGTGGCCAGAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGTAGGAAGA-AGAAAA-CC-AGGCAAAGTGCCAGACCACCTCTCCCACCCCG-GGAAATTTTGCTAATGAGTCTGGAGAAAGTAATAGCGCTACCTG--CCTCATCAGATGCGAACTGTCT-------GCAGCACT-----GGGGG-AAA-CCGTTCC-TGCTCTTTCTGCCAGCAACACTT-GGTCGG------------TCTGTCTGTCTGGTTTAG
		Ciconia_ciconia                  AGGCAGAGACGCCATCTTCAAAGAGTTCCACTTCAAGGACTTCAACCGGGTATGAGCATCGGCGGTAGAGAG-TTTTACAACACGGGAGACCTGGTTTG----CAGAGCAG-------------GGAGT----CCCATCTGCAAGGCTCAGCCAAAGAAA-CCCCTCCATGTTTCTCCTGAAATGTAATGGCTGAGCAAGATAACCTGCCCAAGACACC-AAAGTGCTCAACCCAGGCACATGA--TTTGTCTGGGAAAAG---CTCCCCC---AAAAG-------AGGAAAGCCCATAGAAAA-CCTCAACAAAGATACCGAACATCCCA-GGCCTTGCATTTGGTTGGGTTACCTAGAAACATGTGGTGTAAAATTAATAGCAATGGAGTG------AAAAAA-----------CATTT---TA-TCGCA-GGTAAGTGGTTCAGAGCTAACTCTTCTT---ACTCCACTGGGCAGGCCTTTGGCTTCATGACCAGAGTGGCTCTACAGGCAGAAAAACTGGATCACCACCCCGAATGGTTCAATGTGTACAATAAGGTAAGACAGAGGGATGGTGGGGGCAA-CCAG-AGCTCTTC-AGGGAATGCATC-----CCTTTTGTGAGGCATAAAACAGCA-----------GCAGAAAG---TACTGTTCAGATCAGTGGGA---CCTCTCTCCTCAGATGCTGTT-CCCTTGGCATATCACAGACAGCCTACAGCTATCACCTA-CAGATCCTCTCCCACCCC---TTTTTTTAC---CTGTCCAGCTGAGCAGTAGCTGCCTG-TA-GGCTGGCACCAGGGTTGT---CTTTTT---AAATCAGTATCAGAAGTAGCAG-CAAGGGG-AAAAGCTTCTGGAGA-AAGTGTGAGTTGAAAAGTGAGCACAGCTGGCTGCTGTGACCAAGGCAGGGGTGGCAGTGACAGCTTGCGGCCAGGACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGTAGGAAGG-AAAAAA-CT-AGGCAAAATGCTAGACCACCTCTCCC-CCCCA-GGAAATTTTGGTAACAAGTCTGGAGAAAGTAATAGTGCTACCTG--CCTCATCAGATGCAAACTGCCT-------ACAGCACT-----GCGGG-AAA-CCATTCC-TGCTCTTTCTGCCAGCAACACTT-GGTCGG--------TCTGTCTGTCTGTCTGGTTTAG
		Corvus_corone                    AGGCAGAGACGCCATCTTCAAAGAGTTCCACTTCAAGGACTTCAACCGGGTATGAGCACCAGGGGCATGAAG-TTTTACAGACTGGGACACTCGGTTTG----CGGAGCAG-------------GGAGT----CCCCTCTGCAAAGCTCAGCCAAAGAAA-CCCCTTTGTGTCTCTCCTGAAATGGAATGGCTGAGCAAAATAGCCTACCCAAGACACCCGAAGTGCTCGACCCAG-CATAGAG--TTTGTCTGGGAAACA---CTCCTC---AGGAAG-------AGGAAAACCCATAGAAAACTCCC-----------AGACTATCCCA-GGCCTTGCATTTGGTTGAGTTATCTAGACACAGGCAGTGTAAAATTAATAGTAATGGGGTG-------AAAAC-----------CAATA---TA-TTGCA--------GGTTCAGAGTTAACTTTTCTTCTTACTTT-----GCAGGCCTTTGGCTTCATGACCAGAGTGGCTCTACAGGCAGAAAAACTGGATCACCATCCCGAATGGTTCAATGTGTACAATAAGGTAAGAAACAGGGATTGTGGGGACAAAGCAG-AGAACTTT-AGGGAGCAGATC-----CCTTTTTTGAGAGATAAAACAGGA-----------GCAGCGAG---TCCTGTTCACATCAGAAGGA---CCTCTTCCCTCAGATGCTATT-TCC-----ATACCACAGCCAGCCTGTGGCTATCA-----CAGATCCTTTCCTCCTCC-----TTTTTCC---CTGTCCAGCTGAGCAGTAGCTGCC-A-TA-GGCTGGCACCAGGGTTG----CTTTTT--AAAATCAGTATC--AAGAAGTAG-CCACAGA-AAAAGCTTCTGGGGAAAAGAGTGAGTTGGAAA-TGGGCACAGGTGGCTGCTGTGACCAGGGCAGGGGTGGCAGTGACAGCTTGTGGCCAGGATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGTAGGAAGA-AGAAAAACC-AGGAAAAGTGCCAGAGCGCCTCTCCCACCCCA-GGGAATTTTGCTAACAAGTTTGGAG------------CTAC-TG--CCTCATCAGGT------------------GCAGCACT-----GGGGG-AAA-CCAGCCC-TGCTGTTTCTGTCAGCAATA-----CTCAG--------CCTGTCTGTCTGTCTGCCTTAG
		Smithornis_rufolateralis         AGGCAGGGACGCCATCTTCAAGGAGTTCCACTTCAAGGACTTCAACCGGGTACAAGCACCAGTGGGACGGAG-GTTTACAAACTGGGAGTCCTGGTTTG----CAGAGCAG-------------GGAGC----CCCCTTTGCAAGGCTCAGTCACAGAAA---CCTCTGTGTATCTCTTGAAAGGTGATATCTGAGCCCGGTAACCTGCCCAAAACACC-TAAGTGGTTGACTCAG-CATGCAG--TTTGTCTGGGAAAAA---CTCCTC---AAAAGG-------AGAAAAATCTATAAAAAA-TCCCAA---AGACACAGAACATCCCA-GGCCTTGCATTTGGTTGGGTTATCTAGAAGCAGGTGGTGTAAAATT-ATAGTAATGAGGTG-------AAAAC-----------AAATATATTC-TTATAGGGTAAGTGGTTCAGAGTTAACTTTCCTTCTCACTCC-----ATAGGCCTTTGGCTTCATGACCAGAGTGGCTCTACAGGCAGAAAAACTGGATCACCACCCTGAGTGGTTCAACGTGTACAATAAGGTAAGAATTAGGGATGGTGGGGACAAAACAA-AGCTCTTC-AGGGAGCAGATC-----CCTTTTTGGAGGGATAAAGCAGGA-----------GCAGCAAG---TTCTGTTCATACCAGTGGGA---CCTCTTCCCCCAGATATTATTACCT------TATCACAGACAGCCTACAGCTATCA-----CAGATCCTTTCCTTCTTAC-----TGTTCC---CTGTCCAGCTGAGCAGGAGCTGCTGTCCT-AGCTGGCATCAGCATTG----CTTTTTT--AAATTAGTATCAGAAGTAGCAG-CAAGGGG-AAAAGCTTTTGGGGA-AAGAAGGAATTAAAAAGTGGGCATAGGCAACTGCTATGACCAGGGC-GGGGTGGCAGTGACAGCTTGTGGCCAGGAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGTAGGAAGGG-GAAAA-CC-AGGACAACTGCCAGACCACCTCTCCCATACTG-GGAGGTTTTGCTACCAAGTCTGGAA------------CCACCTGTGCTTCACCAA---------------------CAGCACT-----GCGGG--AA-CCTGTCTCTGCTTTTTCTGCCAGCAACAC-----TCTG------------TCTGTCTGT?????????
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 1361 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
CHARSET PCBD1 = 1 - 1361 ; 
 CHARSET RHO = 1361 ; 
 CHARSET TGFB2 = 1361 ; 
 CHARSET TPM1 = 1361 ; 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;