#NEXUS [written Tue Oct 03 14:19:18 CEST 2017 by Mesquite version 3.31 (build 859) at liran/192.168.1.104] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=30; TAXLABELS AtMYB5 VvMYB5a AtMYB123 AtMYB8 AtMYB6 EjMYB2 GmMYBZ2 CmMYB1 AmMYB308 ObMYB4 PhMYB4 EgMYB1 ZmMYB31 ZmMYB11 ZmMYB42 ZmMYB38 PvMYB4 MusaMYB31 EgMYB4 AtMYB4 AtMYB32 AtMYB7 AmMYB330 ZmMYB8 AtMYB3 VvMYB4 OsMYB4 EjMYB1 PhEOBII AtMYB75 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=375; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX AtMYB5 MMSCGGKKPVSKKTTPCCTK-MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDAN--------------------------------NIHKPEEEVSGGQKYP--LEPISSS----------------HTDDTTVNGGDGDSKNS--INVFGGEHGYED-FGFCYDDKFSS-FLNSLIND------------------------------VGDPFGNIIPISQPLQMDDCKDG-----------------------IVGASSSSLGHD------------------ VvMYB5a ---MRNPASASTSKTPCCTK-VGLKRGPWTPEEDELLANYVKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPKPNPSPDVNAPVSKSIPNANPNPSSSRVGEIGSNHEVKEIESNENHKEPPNLDQYHSP----------------LAADSNENWQSADGLVTGLQSTHGTSNDDEDDIGFCNDDTFPS-FLNSLINEDVF----------GNHNHHQQQQQQQQLQQVQQPSNVIAPLPHPAISVQATFSSSPRTVWE-------------PAALTSTSAPLVHDQKHSMSP----------- AtMYB123 ---------MGKRATTSVRR-EELNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTKQPKRIKHSTNNENNVCVIR-----------------------TKAIRCSKTLLFSDLSLQKKSSTSP----------------LPLKEQEMDQGGSSLMGDLEFDFDRIHSEFHFPDLMDFDGLDCGNVTSLVSS-------------------------------NEILGELVPAQGNLDLNRPFTS----------------------CHHRGDDEDWLRDFTC--------------- AtMYB8 -----------MGRSPCCEK-AHMNKGAWTKEEDQRLIDYIRNHGEGSWRSLPKSVGLLRCGKSCRLRWINYLRPDLKRGNFTDGEEQIIVKLHSLFGNKWSLIAGKLPGRTDNEIKNYWNTHIKRKLLNRGIDPKTHGSIIEPK-----------------------------------TTS----FHPRNEDLKST-----------------------FPG-SVKLKMETSC------ENCASTSGTTTDEDLRLSVDCDYRYD----------------HLDKELNLD--------LTLGYS--PTRFVGVGSCY-------------------------------------------------------- AtMYB6 -----------MGRSPCCEK-AHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINESK-----------------------------------TVSSQVVVPIQNDAVEYS-----------------------FSNLAVKPKTENSS------DNGASTSGTTTDEDLRQNGECYYSDN----------------SGHIKLNLD--------LTLGFGSWSGRIVGVGSSADSKPWCDP---------------------------VMEARLSLL------------ EjMYB2 -----------MGRSPCCEK-AHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLTRGIDPTTHRPLNETP----------------------------------QESATTISFAAASANIKEDDE----------------------KISITNGLVRKHST------NPVQERCPDLNLELQISPPCQPQQP-------------------SESLKSGGR----GLCFSCSL-GIQD-AKNCSCGR-DAFGG----ATSGTANIGYDFLGLKN-G----VLDYRSLEMK----------- GmMYBZ2 -----------MGRSPCCEK-AHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAA----------------------------------TAATVTTNISFG----KQEQQ----------------------ETSSSNGSVVKGS---------ILERCPDLNLELTISPPRQQQQ----------------------TQKN--------LCFVCSL-GLHN-SKDCSCNVSNAVTVNNTTPSSAAAAAAYDFLGMKTSG----VWDCTRLEMK----------- CmMYB1 -----------MGRSPCCEK-AHTNKGAWTKEEDDRLIAYIRTHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPVTDHP----------------------------------TTTTTTTTTVATTVNNNHNVTSPP-------PDIISFATTKTTDHVVKNEDMEQETKLNITSPDQKQERCPDLNLELRIGPPQHHSSNM-----------IPSISYMQQPLMTGG-----TICFACSL-GVQD-NKECRCSTNGTSGNNN-------SNVGFDFFKIKN-G----ALDYRSLEMK----------- AmMYB308 -----------MGRSPCCEK-AHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRSINDGT----------------------------------ASQDQVTTISFSNANSKE----------------------EDTKHKVAVDIMIKEE----NSP--VQERCPDLNLDLKISPPCQQQ-----------------INYHQENLKTGGRNGSSTLCFVCRL-GIQN-SKDCSCSDG--VGN------------------------------------------------ ObMYB4 -----------MGRSPCCEK-AHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLVSRGIDPTTHRPINEAA----------------------------------PPPLPPPQEASKTISFSN--------------------------SSLSPSKMEKIE------------KCPDLNLDLRISPPSSQLQ-------------------NQEPLKTGMSSGSGTLCFTCSL-GIQN-SKDCSCSDGIMISGGG-------NISGYDFMGLKA-G----VLDYRSLEMK----------- PhMYB4 -----------MGRSPCCEK-AHTNKGAWTKEEDERLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRIMNEPS----------------------------------TQKVTTISFAAGNEDIKDQKIS----------------IKAEFEQ-IKDDEIISKP---------IKEQCPDLNLELKISPP-YQQHS-----------------DRALQQSTTGSGGASTICFTCSL-GLKN-NKGCSCSR--NRSMN---------VAGYDFLGLKT-N----GLDYRTLETRTK--------- EgMYB1 -----------MGRSPCCEK-AHTNKGAWTKEEDDKLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRLINEPAQD--------------------------------HHDEPTISFAANSKEIKEMKNN----------------AELNFMCNLEESADVASS---------ARERCPDLNLELGISPPSHQLHQ-----------------PEPLLRFT---GRKSDLC?ECNL-GLKN-SQNCRCSVGVIESET---------SVGYDFLGLKA-S----VLDYRS--------------- ZmMYB31 -----------MGRSPCCEK-AHTNKGAWTKEEDERLVAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIVKLHSVLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPVTHRPVTEHH-----------------------------------ASNITISFETEVAAAARDDKKGAVFRLEDEEEEERNKATMVVGRDRQSQSHSHSHPAGEWGQGKRPLKCPDLNLDLCISPPCQE-----EEEMEEAAMRVRPAVKRE---AG--------LCFGCSL-GLPR-TADCKCS-------------------SSSFLGLRTA-----MLDFRSLEMK----------- ZmMYB11 -----------MGRSPCCEK-AHTNKGAWTKEEDDRLVAYIKAHGEGCWRSLPKAAGLVRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPVTHRPINEH------------------------------------TSNITISFE-------------------------------------------------DWGQGK-ALKCPDLNLDLCISPPCQE-----EEE----AMLLRPVKREE---AG--------LCFSCSL-GLPK-SADCKCS-------------------N--FLGLRTA-----MLDFRRLEMK----------- ZmMYB42 -----------MGRSPCCEK-AHTNRGAWTKEEDERLVAYVRAHGEGCWRSLPRAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIRRKLLGSGIDPVTHRRVAGGA-----------------------------------A--TTISFQPSPNTAVA-------------------------AAAETAAQAPI---KAEETAAVKAPRCPDLNLDLCISPPCQHEDDGEEEEEELDLIK-PAVVKREALQAGHGHGHG--LCLGCGL-GGQKGAAGCSCS------------------NGHHFLGLRTS-----VLDFRGLEMK----------- ZmMYB38 -----------MGRSPCCEK-AHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGIDPVTHRPIAADA-----------------------------------VTVTTVSFQPSPSAAAA-------------------------AAAEAEATA------------AKAPRCPDLNLDLCISPPCQQ----QEEEEEVDLKPSAAVVKREVLLGGRGHGHGGALCFGCSL-GVQKGAPGCSCSS----------------SNGHRCLGLRGG-----MLDFRGLKMK----------- PvMYB4 -----------MGRSPCCEK-AHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSRGIDPVTHRPIADAA-----------------------------------RN-VTISFQPDAPSQQQ-------------------------LSDDAEAPPPPPPPQQQQQQLKPPPRCPDLNLDLCISPPCHK------EEEDQELIK-PAAVKREMLQAGHGTLG---LCFGCSL-GLQKGAAGCTCS------------------SNSHFLGLRVGM----LLDFRGLEMK----------- MusaMYB31 -----------MGRSPCCEK-AHTNKGAWTKEEDERLIAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNHWNTHIRRKLLSRGVDPATHRPVNDRP-----------------------------------PSNITISFE-----------------------------------RREGKAVGGS---EESSVWQQQTQRPDLNLELCISLPFQQ--------------DPHELTKREKS-----------LCFSCSL-GLQN-SKECKCR---------------------DFSGLSNG-----MLSYRGLKMK----------- EgMYB4 -----------MGRSPCCEK-AHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRSIH-AP-----------------------------------LSDFTITFAKGEKKDVK-------------------------ILRRDEEKTGRSCTREESAPWRQYR-CPDLNLELSISPPFQQ--------------PVEPIKGERRS-----------LCFNCSL-GLQG-SKECKCN---------------------CFLGLGGG-----VLDYRTVEME----------- AtMYB4 -----------MGRSPCCEK-AHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQESS-A--------------------------------SQDSKPIQLEPVTSNTINISFTSAP---------KVETFHESISFPGKSEKISMLTFKEEKDECPVQEKFPDLNLELRISLPDDVDR----------------LQGHGKSTTP--------RCFKCSL-GMIN-GMECRCGRMRCDVVGGS-SKGSDMSNGFDFLGLAKKETTS-LLGFRSLEMK----------- AtMYB32 -----------MGRSPCCEK-DHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINETKTSQDSSDS----------------------SKTEDPLVKILSFGPQLEKIANF------------------------GDERIQKRV--------EYSVVEERC-LDLNLELRISPPWQDKLH----------DERNLRFGRVKYRCS-------ACRFGFGN-GKECSCNNVKCQTEDSSSSSYSSTDISSS-IGYDFLGLNN---TR-VLDFSTLEMK----------- AtMYB7 -----------MGRSPCCEK-EHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINYLRPDLKRGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLLSKGIDPATHRGINEAKIS----DL----------------------KKTKDQIVKDVSFVTKFEETDKS------------------------GDQKQNKYIRNGLVCKEERVVVEEKIGPDLNLELRISPPWQNQ--------------------REISTCT-------ASRFYMEN-DMECSSETVKCQTENSSSISYSSIDISSSNVGYDFLGLK----TR-ILDFRSLEMK----------- AmMYB330 -----------MGRSPCCEK-AHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGIDPQTHRSLNSATTTAT---------------------------ATPTVNNSCLDFRTSPSNSKNICMPTTDNNN--------NSSSSTDDTKCNSSTTEESQSLITPPPKEEEKSVPLVDLELSLGLPSQSQ-----------------------------------CNKSVSL-NSSSSGFYDLFRPPAKVAQRM--------CVCKWTLGLQKGEQFCNCQSFNGFYRYC---------- ZmMYB8 -----------MGRSPCCEK-AHTNKGAWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQEEDDVIIKLHQVLGNKWSLIAAQLPGRTDNEIKNYWNTHIKRKLIARGIDPRTHQPA-SAAAVAP---------------------------AAAAAAAAQSSFRHHGDDE-------AVARR--------SCSRDSGCIAAHSSDDDDSTSGSLP----HQHAVGGIDLNLSLSPPTSQP-----------------------------------SSPAAAK-GVVASGYG------------------------------QGSES------------------------ AtMYB3 -----------------------MNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNSHRLINESVVSPS---------------------------SLQNDVVETIHLDFSGPVKPEP------------------------VREEIGMVNNCESSGTTSEKDYGNEEDWVLNLELSVGPSYRYES------------------TRKVSVVDSAES---TRRWGSELFGAHESDAVCLCCR----------------------IGLFRNE---SCRNCRVSDVRTH--------- VvMYB4 -----------MGRIPCCEK-DNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGMSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVVGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIAT----------------------------TLAPPQVAHLAEAALGCFKDEMLHLLTKKR----------IDFQFQQSGAAPGNTAATYTANKQDEKDDTIEKIKLGLSRAMQEPAMLPLNKPWDSNGATSANFAGACSGFPISVSGFQYGPSPFGNEGDGSPWSQSMCTGSTCTAGDQQGRLHEKLEDENGEETGGGKEIRHSSSIFNSDCVLWDLPSDDLMDPMV OsMYB4 -----------MGRAPCCEK-MGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQGGHVAASGGKKHKK-------------------------------PKSAKKPAAAAAAPPASPERS----------------------ASSSVTESSMASSVAEEHGNAGISSASASVCAKEESSFTSASEEF-----------------QIDDSFWSETLS-----MPLDGYDVS-MEPGDAF-VAPPSADDMD-------------YWLGVFMESGE--AQDLPQI-------------- EjMYB1 -----------MGRAPCCEK-MGLKKGPWTSEEDQILTSFIQKYGHGNWHALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFTREEEEAIIKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLKD-----HTTTTSQTRS-----------------------------------SSNSTSNVTSQFADEPENL----------------------NYPQPSSSDVSSSFTEVS--AALSTDQDTIVVKDEN--MELSETFP----------------DVDDSFWPEALSTDNSSVPLQCPKASNDEPISEFPITKNDSEEFG-------------FRFGLNMDDG----MEILV--------------- PhEOBII -----------MDKKPCNSQDAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAETMNGQAASSEQND----------------------------------HQEACTSQMSNGPNDN---------------------------TIDQTYSPTSYSG------------NVDTFQAGPNFLTEANDN-----------------------------------MWSMEDIWSMQLLNGD----------------------------------------------------------- AtMYB75 --------------MEGSSK--GLRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHEPCCKIKMKKRDITPIP---------------------------------TTPALKNNVYKPRPRSFTVNN---------------------DCNHLNAPPKVDVNPPCLGLNINNVCDNSIIYNKDKKKDQLVNNLID------------------------------GDNMWLEKFLEESQEVDILVPEATTTEKGD----------------TLAFDVDQLWSLFDGETVKFD----------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 375; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 375; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 375; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1507033158135; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5022299614370540795; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6830018462620052973; mqVersion 331; checksumv 0 3 3991582296 null getNumChars 375 numChars 375 getNumTaxa 30 numTaxa 30 short false bits 1048575 states 1048575 sumSquaresStatesOnly 5.49969938737E13 sumSquares 5.49969938737E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 223; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; endTell; end;