#NEXUS [written Tue Oct 03 14:56:43 CEST 2017 by Mesquite version 3.31 (build 859) at liran/192.168.1.104] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS OsF5H ZmF5H EgF5H GmF5H MsF5H CeF5H ObF5H LeF5H NtF5H CaF5H LsF5H BpF5H PtF5H BnF5H ItF5H AtF5H SmF5H ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=565; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX OsF5H -----MADMVKFTMEWLQDP-----LSLAIVVTVAVLIMRMQRRRAAPFPPGPKPLPIVGNMAMMDQLTHRGLAALAKEYGGLMHLRLGRLHAFAVSTPEYAREVLQAQDGAFSNRPATTAIAYLTYDRADMAFAHYGPFWRQMRKLCVVKLFSRRRAETWLAVRD-ESAALVRAVAASRGE--AAVNLGELIFNLTKNVI-----FRAAFGTRDGEGHDEFIAILQEFSKLFGAFNIGDFIPWLSWADTNGINARLVAARTALDRFIDKIIDEHMERGKN-------PDDADADMVDDMLAFLAEAKPHAGKAAAAAAGAGDGADDLQNTLRLTRDNIKAIIMDVMFGGTETVASAIEWAMAEMMHSPDDLRRVQEELAAVVGLGRDVAESDLDKLPFLRCVIKETLRLHPPIPILLHETAADCLVAGYSVPRGSRVMVNVWAIARDRAAWGPDADAFRPSRFAAGAAAEGLDFRGGCFEFLPFGSGRRSCPGMALGLYALELAVARLAHGFNWSLPDGMK-PSELDMSDIFGLTAPRATRLSAVATPRLTCPLY--*!?*!?! ZmF5H -----MVTVAKIAMEWLQDP-----LSWVFLGTLALVVLQLRRRGKAPLPPGPKPLPIVGNMAMMDQLTHRGLAALAERYGGLLHLRLGRLHAFAVSTPEYAREVLQAQDGAFSNRPATIAIAYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRRRAETWVAVRD-ECAALVRAVASGGGGGGEAVNLGELIFNLTKNVT-----FRAAFGTRDGEDQEEFIAILQEFSKLFGAFNVVDFLPWLSWMDLQGINRRLRAARSALDRFIDKIIDEHVRRGKN-------PDDADADMVDDMLAFFAEAKPPKKGPAAAADG-----DDLHNTLRLTRDNIKAIIMDVMFGGTETVASAIEWAMAEMMHSPDDLRRLQQELADVVGLDRNVNESDLDKLPFLKCVIKETLRLHPPIPLLLHETAGDCVVGGYSVPRGSRVMVNVWAIGRHRASWK-DADAFRPSRFTPEGEAAGLDFKGGCFEFLPFGSGRRSCPGTALGLYALELAVAQLAHGFNWSLPDGMK-PSELDMGDVFGLTAPRATRLYAVPTPRLNCPLY--------- EgF5H -------------MDWLQESTIMSFILFFLIPLALLFVLSTRRRRELLFPPGPRQLPIIGNMLMMDQLTHRGLAKLADKYGGLCHLRLGYLHAFAVSTPEMAREVLQVQDNVFSNRPATMAITYLTYDRSDMAFAHYGPFWRQMRKLCVMKLFSRKCAMSWAAVRE-EIEVMIHAVAGRKGT---TVNLGELIFNLTMNIT-----FRAAFGTPNHENQDEFVSILQEFSKLFGAFNIGDFIPWLSWMDPQGINKRLNVARAALDRFIDKIIDEHMANPKA-------TDAEDADMVDDMLAFLDDHSRVSKQGGE--------KDELQGNLKLTRDNIKAIIMDVMFGGTETVASAIEWTMAELMRSPDDLKRVQRELADIIGLDRKVHENDLDRLLFLKCATKETLRLHPPIPLLLHETAVDCKVDGYFIPKKSRVMINAWAIGRDKSAWR-DADKFRPSRFASGGDSTGIDFKGNFFELIPFGSGRRSCPGMQLGLYALELAVAQLLHCFNWALPDDMK-PSELDMGDVFGLTAPRAVRLTAVPTPRLSCALY--------- GmF5H ----MD---WQSMMGNL--DPFQRTILILVPLTLLLLLLLSRTRPRPPYPPGPKGFPIIGNMFMMDQLTHRGLANLAKHYGGIFHLRMGFLHMVAISDPDAARQVLQVQDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWQSVRD-EVDAAVRAVASSVGK---PVNIGELVFNLTKNII-----YRAAFGSSSQEGQDEFIKILQEFSKLFGAFNIADFIPYLGCVDPQGLNSRLARARGALDSFIDKIIDEHVHKMKND--KSSEIVDGETDMVDELLAFYSEEAKLNNESDD-----------LQNSIRLTKDNIKAIIMDVMFGGTETVASAIEWAMAELMRSPEDQKRVQQELADVVGLDRRAEESDFEKLTYLKCALKETLRLHPPIPLLLHETAEDATVGGYFVPRKARVMINAWAIGRDKNSWE-EPETFKPARFLKPG---VPDFKGSNFEFIPFGSGRRSCPGMVLGLYALELAVAHLLHCFTWELPDGMK-PSEMDMGDVFGLTAPRSTRLIAVPTKRVVCPLF--------- MsF5H ----MDSLLKYPIMENFKEEPFLMAIMFILPL-ILLLGLVSRILKRPRYPPGPKGLPVIGNMLMMDQLTHRGLANLAKKYGGIFHLRMGFLHMVAISDADAARQVLQVQDNIFSNRPATVAIKYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKHAESWQSVRD-EVDHAIRTVSDNIGN---PVNIGELVFNLTKNII-----YRAAFGSSSREGQDEFIGILQEFSKLFGAFNISDFVPCFGAIDPQGLNARLVKARKDLDSFIDKIIDEHVQKKKS-------VVDEETDMVDELLAFYSEEAKLNNESDD-----------LHNSIKLTKDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKKVQQELAEVVGLSRQVEEPDFEKLTYLKCALKETLRLHPPIPLLLHETAEEATVNGYFIPKQARVMINAWAIGRDANCWE-EPESFKPSRFLKPG---VPDFKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMK-PSEMDMSDVFGLTAPRASRLIAIPTKRVLCPLD--------- CeF5H -----MDIRENQFLQALAADPLL-ILLLFITP-LLFLFLLSRFRLKP-YPPGPRGWPLIGNMTMMDQLTHRGLAKLAGKYGGILHLRMGFVHTVAVSSPDIARQVLQVQDNIFSNRPATIAISYLTYDRADMAFADYGPFWRQMRKLCVMKLFSRKRAESWDSVRD-EVERMTHIVATNIGS---PVNIGEMVFGLTKDVI-----YRAAFGTSSHEGQDEFIKILQEFSKLFGAFNLADFIPWLSWFDPQGLNKRLEKARASLDGFIDSIIDDHMNRKKI---KSGSNDVVESDMVDELLVFFSDEAKV-LESED-----------LQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMRNPDDLKRVQQELSDVVGLHRKVQESDFEKLTYFKCCLKETLRLHPPIPLLLHETAEASEIAGYRIPAKSRVMINAWAIGRDKDSWK-DPDTFRPARFLEEG---VPDFKGSNFEFIPFGSGRRSCPGMQLGLYALEVAVAHLLHCFTWELPDGMK-PSELDMGDVFGLTAPRASRLVAVPSPRLLCPLY--------- ObF5H -------MKMVNLLETN--NPLL-FISFTIPL-FIFFFFLSRFRRKR-YPPGPRGWPVIGNMGLMDQLTHRGLAKLAKKYGGIFHLRMGFVHMVAVSSPDVARQVLQVHDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWDSVRD-EVDDMVRAVATSSGT---VVNIGELVFGLTKNII-----YRAAFGSSSHEGQDDFIKILQEFSKLFGAFNIADFIPWLGWIDPQGLNGRLIKARAELDGFIDTIIDDHMQKRRP---ENGGGEAVESDMVDELLVFYSEEAKLNLESED-----------LQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMTELMRSPEDLKRVQQEMMDVVGPTRKVEESDFEKLTYLRCCLKEVLRLHPPIPLLLHETSDDAVISGYHVPAKSRVMINAWAIGRDPSAWE-DAESFKPSRFLRDG---VPDFKGGNFEFIPFGSGRRSCPGMQLGLYALEVAVAHLLHCFTWELPDGMK-PSEMDMDDVFGLTAPRATRLMAVPTPRLLCPLY--------- LeF5H ---MVLNNIN-SILEALQANPIL-IFFFIIP--LFFLYLFSTSRRKR-YPPGPLGWPLIGNMMIMDQLTHRGLAKLAQKYGGVFHLKMGYVHKIVISGPEEARQVLQVQDNIYSNRPKTVAISYLTYDRADMAFADYGPFWRQMRKLCVMKLFSRKRAESWDSVRD-EVDSMVKIVTTNAGT---SINLGELVFCLTRNII-----YRAAFGTSSDEGQDDFIKILQEFSKLFGAFNMADFIPWLGWIGKQGLNVRLAKARASLDGFIDTIIDDHIERKKA-IHVINDDGYRESDMVDELLAFYSEETKV-NESED-----------LQNAIRLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKKVQQELANVVGLNRKVDESDFENLTYLKCCLKETLRLHPPIPLLLHETAEESTVSGYYIPANSHVIINSFAIGRDKNSWE-DPDSFKPSRFLKEG---VADFKGGNFEFLPFGSGRRSCPGMQLGLYALEMAVAHLLHCFTWELPDGMK-PSELNMDDMFGLTAPLANRLVAVPTPRLLCEIY--------- NtF5H MKEMVQNNMSTSLLETLQATP-M-IFYFIVP--LFCLFLLSKSRRKR-LPPGPTGWPLIGNMMMMDQLTHRGLAKLAQKYGGVFHLKMGYVHKIVVSGPDEARQVLQEHDIIFSNRPATVAISYLTYDRADMAFADYGLFWRQMRKLCVMKLFSRKRAESWDSVRD-EADSMVRIVTTNTGT---AVNLGELVFSLTRNII-----YRAAFGTCSEDGQGEFIKIMQEFSKLFGAFNIADFIPWLGWVGKQSLNIRLAKARASLDGFIDSIIDDHIIRKKAYVNGKNDGGDRETDMVDELLAFYSEEAKV-TESED-----------LQNAIRLTKDNIKAIIMDVMFGGTETVASAIEWAMAELMRSPEDLKKVQQELANVVGLNRKVEESDFEKLTYLRCCLKETLRLHPPIPLLLHETAEESTVSGYHIPAKSHVIINSFAIGRDKNSWE-DPETYKPSRFLKEG---VPDFKGGNFEFIPFGSGRRSCPGMQLGLYALEMAVAHLLHCFTWELPDGMK-PSELKMDDIFGLTAPRANRLVAVPTPRLLCPLY--------- CaF5H -------MEMDALRQVLHPMP---TALFFIAP-LFFLFILSRLRRKLPYPPGPNGLPLVGNMMMMDQLTHRGLAKLAKQYGGIFHLRMGFLHMVAVSSPEIARQVLQVQDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWESVRD-EVDSMVRVVVSHTGK---SVNIGELVFSLTRDII-----YRAAFGSSSHEGQDEFIKILQEFSKLFGAFNIADFIPGLGWVDPQGLNARLVQARASLDGFIDSIIDDHIEKHRR-----RNVVDSDGDMVDDLLAFYSDEAKV-TESDD-----------LQNAIRLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELAEVVGLDRRLEESDFDKLTYLKCALKETLRLHPPIPLLLHETAEDTEVAGYYIPARSRVMINAWAIGRDKNSWD-EPETFKPSRFLKEG---VPDFKGSNFEFIPFGSGRRSCPGMQLGLYALEMAVAHLLHCFTWTLPDGMK-PSELDTDDVFGLTAPRATLFVAVPSPRLLCPLY--------- LsF5H --------MDSSLHEALQPLP-M-TLFFIIPL-LLLLGLVSRLRQRLPYPPGPKGLPVIGNMLMMDQLTHRGLAKLAKQYGGLFHLKMGFLHMVAVSTPDMARQVLQVQDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWESVRD-EVDSAVRVVASNIGS---TVNIGELVFALTKNIT-----YRAAFGTISHEDQDEFVAILQEFSQLFGAFNIADFIPWLKWV-PQGINVRLNKARGALDGFIDKIIDDHIQKGSK------NSEEVDTDMVDDLLAFYGEEAKV-SESDD-----------LQNSIKLTKDNIKA-IMDVMFGGTETVASAIEWAMTELMKSPEDLKKVQQELAVVVGLDRRVEEKDFEKLTYLKCVLKEVLRLHPPIPLLLHETAEDAEVGGYYIPAKSRVMINACAIGRDKNSWA-DPDTFRPSRFLKDG---VPDFKGNNFEFIPFGSGRRSCPGMQLGLYALETTVAHLLHCFTWELPDGMK-PSELEMNDVFGLTAPRAIRLTAVPSPRLLCPLY--------- BpF5H ----MDTKSITLLQEALKPLPMA--IFLVIP-LLFLLGHILRSRGRLPYPPGPKGLPIIGSMSMMDQLTHRGLAALAKQYGGIFHLKMGYLHMVAISSPETARQVLQLQDNIFSNRPANIAIRYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAASWESVRG-EVEKTVLSVAGSTGT---AVNVGELVFKTTMDII-----YRAAFGASNKEGQDEFISILQEFSKLFGAFNMADFIPWLTWVDPQGLNGRLKRARKALDAFIDKIIDEHVVKK---------NEAAETDMVDDLLAFYSNEEAKVNDAED-----------LHNAIRLTRDNIKAIIMDVMFGGTETVASAIEWAMTEMMRCPEDLKKVQQELADVVGLDRRLEESDFEKLTYLRCAIKETLRLHPPIPLLLHETAEDAAVAGYHIPKGSRVMINAWAIGRDKNSWA-DPDSFKPARFLRDG---VPDFKGSNFEFIPFGSGRRSCPGMQLGLYALELTVGHLLHCFTWNLPDGMK-PSELDMNDVFGLTAPRATRLVAIPTKRVVCTI---------- PtF5H ----MDS-----LLQSLQTLPMS--FFLIIISSIFFLGLISRLRRRSPYPPGPKGFPLIGSMHLMDQLTDRGLAKLAKQYGGLFHMRMGYLHMVAGSSPEVARQVLQVQDNMFSNRPANIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWESVRD-EVDSMVKTVESNIGK---PVNVGELIFTLTMNIT-----YRAAFGAKN-EGQDEFIKILQEFSKLFGAFNISDFIPWLGWIDPQGLTARLVKARKALDKFIDHIIDDHIQKRKQ----NNYSEEAETDMVDDMLTFYS-EETKVNESDD-----------LQNAIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELLKSPEDIKRVQQELADVVGLERRVEESDFDKLTFFKCTLKETLRLHPPIPLLLHETSEDAEVAGYYVPKKTRVMINAYAIGRDKNSWE-DPDSFKPSRFLEPG---VPDFKGNHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMK-PSELDMTDMFGLTAPRATRLVAVPRKRVVCPL---------- BnF5H --------MESSISQTLSQVIDPTTGILIVVSLFIFIGLITR-RRRPPYPPGPRGWPIIGNMSMMDQLTHRGLANLAKKYGGLCHLRMGFLHMYAVSSPDVAKQVLQVQDSVFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKVCVMKVFSRKRAESWASVRD-EVDKMIRSVSSNVGK---SINVGEQIFALTRNIT-----YRAAFGSACEKGQDEFIRILQEFSKLFGAFNVADFIPYFGWIDPQGINKRLVKARNDLDGFIDDIIDEHMKKKENQ-NSVDAGDVVDTDMVDDLLAFYSEEAKLVSETAD-----------LQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWALTELLRSPEDLNRVQQELAEVVGLDRRVEESDIEKLTFLKCTLKETLRLHPPIPLLLHETAEDTEIDGYFVPKKSRVMINAFAIGRDKNSWV-DPETFRPSRFLEPG---VPDFKGSNFEFIPFGSGRRSCPGMQLGLYALELAVAHILHCFTWKLPDGMK-PSELDMSDVFGLTAPKATRLYAVPSTRLICSV---------- ItF5H --------MESSISQTLSQVLDPTTAILTVVSLFIFIGLIVR-RRRPPYPPGQRGWPIIGNMLMMDQLTHRGLANLAKKYGGLCHLRMGFLHMYAVSSPDVAKQVLQVQDSVFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKVCVMKVFSRKRAESWASVRD-EVDKMIRSVSSNIGK---PINVGEQIFALTRNIT-----YRAAFGSACEKGQDEFIRILQEFSKLFGAFNVADFIPYFGWIDPQGINKRLVKARNDLDGFIDDIIDEHMKKKESQ-NTVDDGDVVDTDMVDDLLAFYSEEAKLVSDATD-----------LQSSIKLTRDNIKAIIMDVMFGGTETVASAIEWALTELLRSPEDLKRVQQELAEVVGLDRRVEESDIEKLTFLKCTLKETLRLHPPIPLLLHETAEDTEIDGYFVPKKSRVMVNAFAIGRDPDSWV-DPETFRPSRFLEPG---VPDFKGSNFEFIPFGSGRRSCPGMQLGLYALELAVAHILHCFTWKLPDGMK-PSELDMSDVFGLTAPKATRLFAVPSTRLICAV---------- AtF5H --------MESSISQTLSKLSDPTTSLVIVVSLFIFISFITR-RRRPPYPPGPRGWPIIGNMLMMDQLTHRGLANLAKKYGGLCHLRMGFLHMYAVSSPEVARQVLQVQDSVFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKVCVMKVFSRKRAESWASVRD-EVDKMVRSVSCNVGK---PINVGEQIFALTRNIT-----YRAAFGSACEKGQDEFIRILQEFSKLFGAFNVADFIPYFGWIDPQGINKRLVKARNDLDGFIDDIIDEHMKKKENQ-NAVDDGDVVDTDMVDDLLAFYSEEAKLVSETAD-----------LQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWALTELLRSPEDLKRVQQELAEVVGLDRRVEESDIEKLTYLKCTLKETLRMHPPIPLLLHETAEDTSIDGFFIPKKSRVMINAFAIGRDPTSWT-DPDTFRPSRFLEPG---VPDFKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHILHCFTWKLPDGMK-PSELDMNDVFGLTAPKATRLFAVPTTRLICAL---------- SmF5H -MNLSSIMGEYTQHDNFTAVASLSLVLAAAIALLAALYSRLRNSKRPPLPPSPPSKLITGHLHLLDQLPNQSLYKLAKIYGPLIQLRLGVVPVVVASTAEMAREFLKVNDSVCASRPRMAAQKIITYNFTDIGWAAYGAHWRQLRKICTLELFTHRRMQETAKVRARELADTMAGIYRDRET---SINMNTRIFSLTMNVINQMVMRKKPFSGSDTTEAREFIDLINGVFMVWGAFNIGDYIPGLSIFDFQGYIGMAKVLHKKLDHLLDKVIEEHIQRRMAK-------SDEPPDFVDVLLALTLEDGSK-----------------------VSHKTIKGIIVDMIAGGTDTAAVTIEWALSELMRKPHILKKAQEEMDRVVGRDRVVDESDLPNLPYLECIVKEALRLHPSVPILRHESIEDCVVAGYRIPKGTGIMINVWAIGRDSATWE-NPMEFDPDRFISAG--NTLDVRGNHFDLIPFGSGRRMCPGMPLGISMLQMSLGRFIQCFDWGLPPEMKSAEEIDMTETFGLTVPRKYPLHAVPIPRLPAHLYQA------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 565; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 565; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 565; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1507035407661; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 978631327737740453; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8520481143764285879; mqVersion 331; checksumv 0 3 2058633584 null getNumChars 565 numChars 565 getNumTaxa 17 numTaxa 17 short false bits 4611686018429485055 states 2097151 sumSquaresStatesOnly 7.6019645730032E13 sumSquares 7.6019645730032E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1 errorReportedDuringRun errorDuringImport; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 223; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; endTell; end;