#NEXUS [written Sun May 27 19:59:49 SRET 2018 by Mesquite version 3.40 (build 877) at NoPsechrids.local/10.0.1.2] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=57; TAXLABELS 'Ceratocystis adelpha CMW14809_KR476787_Theobroma_cacao_Ecuador' 'Ceratocystis adelpha CMW15051_AY157951_Theobroma_cacao_Costa_Rica' 'Ceratocystis cacaofunesta CMW14798_AY157952_Theobroma_cacao_Costa_Rica' 'Ceratocystis cacaofunesta CMW26375_AY157953_Theobroma_cacao_Brazil' 'Ceratocystis colombiana CMW5751_NR119483_Coffea_arabica_Colombia' 'Ceratocystis colombiana CMW5761_AY177234_Coffea_arabica_Colombia' 'Ceratocystis curvata CMW22435_FJ151437_Eucalyptus_deglupta_Ecuador' 'Ceratocystis curvata CMW22442_NR137018_Eucalyptus_deglupta_Ecuador' 'Ceratocystis diversiconidia CMW22445_FJ151440_Terminalia_ivorensis_Ecuador_' 'Ceratocystis diversiconidia CMW22448_FJ151441_Terminalia_ivorensis_Ecuador' 'Ceratocystis ecuadoriana CMW22092_FJ151432_Eucalyptus_deglupta_Ecuador' 'Ceratocystis ecuadoriana CMW22097_FJ151434_Eucalyptus_deglupta_Ecuador' 'Ceratocystis eucalypticola CMW10000_FJ236722_Eucalyptus_spp_Kwazulu_Natal' 'Ceratocystis eucalypticola CMW11536_FJ236723_Eucalyptus_spp_Kwazulu_Natal' 'Ceratocystis fimbriata CMW14799_KC493160_Ipomoea_batatas_North_Carolina' 'Ceratocystis fimbriata CMW1547_AF264904_Ipomoea_batatas_Papua_New_Guinea' 'Ceratocystis fimbriata CMW46734_KY809154_Ipomoea_batatas_Hawaii' 'Ceratocystis fimbriatomima CMW24174_EF190963_Eucalyptus_hybrid_Venezuela' 'Ceratocystis fimbriatomima CMW24377_EF190966_Eucalyptus_hybrid_Venezuela' 'Ceratocystis lukuohia CMW44103_Metrosideros_polymorpha_Hawaii_TypeA' 'Ceratocystis lukuohia CMW44105_Metrosideros_polymorpha_Hawaii_TypeA' 'Ceratocystis lukuohia CMW44106_Metrosideros_polymorpha_Hawaii_TypeA' 'Ceratocystis lukuohia CMW44107_Metrosideros_polymorpha_Hawaii_TypeA' 'Ceratocystis lukuohia CMW46741_Metrosideros_polymorpha_Hawaii_TypeC' 'Ceratocystis lukuohia CMW46743_Metrosideros_polymorpha_Hawaii_TypeA' 'Ceratocystis lukuohia CMW46743_Metrosideros_polymorpha_Hawaii_TypeC' 'Ceratocystis lukuohia CMW47139_Metrosideros_polymorpha_Hawaii_TypeA' 'Ceratocystis lukuohia CMW47139_Metrosideros_polymorpha_Hawaii_TypeC' 'Ceratocystis lukuohia CMW47152_Metrosideros_polymorpha_Hawaii_TypeA' 'Ceratocystis lukuohia CMW47152_Metrosideros_polymorpha_Hawaii_TypeC' 'Ceratocystis lukuohia CMW47857_KY809158_Metrosideros_polymorpha_Hawaii_TypeC' 'Ceratocystis lukuohia CMW44102_KP203957_Metrosideros_polymorpha_Hawaii_TypeA' 'Ceratocystis mangicola CMW14797_AY953382_Mangifera_indica_Brazil' 'Ceratocystis mangicola CMW28907_FJ200257_Mangifera_indica_Brazil' 'Ceratocystis manginecans CMW13851_NR119532_Mangifera_indica_Oman' 'Ceratocystis manginecans CMW13852_AY953384_Mangifera_indica_Oman' 'Ceratocystis mangivora CMW15052_EF433298_Mangifera_indica_Brazil' 'Ceratocystis mangivora CMW27305_FJ200262_Mangifera_indica_Brazil' 'Ceratocystis neglecta CMW17808_NR137552_Eucalyptus_grandis_Colombia' 'Ceratocystis neglecta CMW18194_EF127991_Eucalyptus_grandis_Colombia' 'Ceratocystis papillata CMW10844_AY177238_Coffea_arabica_Colombia' 'Ceratocystis papillata CMW8856_NR_119486_AY233867_Citrus_x_Tangelo_Colombia' 'Ceratocystis species CMW14794_AY526298_Xanthosoma_C._esculenta_Cuba' 'Ceratocystis species CMW14805_AY526297_Xanthosoma_sagittifolium_Costa_Rica' 'Ceratocystis species CMW48500_AY526294_Syngonium_spp_Hawaii' 'Ceratocystis species CMW50456_Syngonium_spp_Hawaii' 'Ceratocystis species CMW48508_AY526295_Syngonium_spp_Florida' 'Ceratocystis platani CMW14802_DQ520630_Platanus_occidentalis_North_Carolina' 'Ceratocystis platani CMW1896_AF395681_Platanus_spp_Switzerland' 'Ceratocystis platani CMW2219_AF395679_Platanus_spp_France' 'Ceratocystis platani CMW23450_KJ631107_Platanus_occidentalis_Greece' 'Ceratocystis platani CMW9499_Platanus_spp_Italy' 'Ceratocystis cercfabiensis Eucalyptus_spp_China' 'Ceratocystis cercfabiensis CMW43029_KP727592_KP727593_KP727594_Eucalyptus_species_China_Clone_K_ITS' 'Ceratocystis huliohia CMW46738_KY809156_Metrosideros_polymorpha_Hawaii' 'Ceratocystis huliohiae CMW47143_KY809155_Metrosideros_polymorpha_Hawaii' 'Ceratocystis albifundus CMW4068_DQ520638_Acacia_mearnsii_Kwazulu_Natal' ; END; BEGIN CHARACTERS; TITLE Ceratocystis_LAC_clade_ITS_57x549; DIMENSIONS NCHAR=549; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Ceratocystis adelpha CMW14809_KR476787_Theobroma_cacao_Ecuador' CCATGTGTGAACGTACCTATATATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------CGTTT-CACCACTAT-----AAACTC--TTTTATTATATTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAAAAAAAAGTTAAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAAAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis adelpha CMW15051_AY157951_Theobroma_cacao_Costa_Rica' CCATGTGTGAACGTACCTATATATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------CGTTT-CACCACTAT-----AAACTC--TTTTATTATATTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAAAAAAA?GTTAAAAACTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT---CCCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis cacaofunesta CMW14798_AY157952_Theobroma_cacao_Costa_Rica' CCATGTGTGAACGTACCCCTATATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT----AAAACTC----TTATTATTTTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAAAAAAAAGTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT---CCCCCTGAACAGGCCGCCGAAATGCATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis cacaofunesta CMW26375_AY157953_Theobroma_cacao_Brazil' CCATGTGTGAACGTACCCCTATATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT----AAAACTC----TTATTATTTTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAAAAAAAAGTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATGGCAAAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT---CCCCCTGAACAGGCCGCCGAAATGCATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis colombiana CMW5751_NR119483_Coffea_arabica_Colombia' CCATGTGTGAACATACCC---TATC---TTGTAGTGAAGATGAA----TGCTGTTTTGGTGG-----------TTAGGG----CCCTTCTGAAAGGGGGGGGC----ACCGCTGCCAGCAGTATA------------AGTCTTCACCACTGT----AAAACTC--TTTTTATATTTTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAAAA----GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACC--TCTTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTGCCCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis colombiana CMW5761_AY177234_Coffea_arabica_Colombia' CCATGTGTGAACATACCC---TATC---TTGTAGTGAAGATGAA----TGCTGTTTTGGTGG-----------TTAGGG----CCCTTCTGAAAGGGGGGGGC----ACCGCTGCCAGCAGTATA------------AGTCTTCACCACTGT----AAAACTC--TTTTTATATTTTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAAAA----GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACC--TCTTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTGCCCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis curvata CMW22435_FJ151437_Eucalyptus_deglupta_Ecuador' CCATGGGTGAACGTACC----TATT--TTTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTTTGAA--GGGAGGGC----CCCGCTGCCAACAGTATT------------AGTTTT-ACCCCCGT-----AAACTT--TTTATATTTTTTTTCAG----------ATATTCATT-GGTGAGTGGCATAAA-TATAAAAAAAA-----GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis curvata CMW22442_NR137018_Eucalyptus_deglupta_Ecuador' CCATGGGTGAACGTACC----TATT--TTTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTTTGAA--GGGAGGGC----CCCGCTGCCAACAGTATT------------AGTTTT-ACCCCCGT-----AAACTT--TTTATATTTTTTTTCAG----------ATATTCATT-GGTGAGTGGGATAAA-TATAAAAAAAA-----GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis diversiconidia CMW22445_FJ151440_Terminalia_ivorensis_Ecuador_' CCATGTGTG-ACGTACC----TATC---TTGTAATG-AGATGAA----TGCTGCTTTGGTGG-----------TTAGG------CCTTCTATAA------GGC----ACCGCTACCAGCAGTAT-------------AGTCG-CACCACT-------AAACTC--TTAATTTTTTTTTTTTGTTAGAAATTTGATTTCTTT-GCTAAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCAATGAAAAACGCAGCGAAATGCGATAAGAAATGTGAATTGCAAAATTCAGGGAATCTTCGAATCTTTGAACGCACTTTGGGCCTGGCAGTTTTCTGCCGGGCATGCCTGCCCAAGCGCCATTTCCCCACTCAA-AACT---CCTTT-GTTCTTGGGGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCAAAATGCATCGG-TTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis diversiconidia CMW22448_FJ151441_Terminalia_ivorensis_Ecuador' CCATGTGTG-ACGTACC----TATC---TTGTAATG-AGATGAA----TGCTGCTTTGGTGG-----------TTAGG------CCTTCTATAA------GGC----ACCGCTACCAGCAGTAT-------------AGTCG-CACCACT-------AAACTC--TTAATTTTTTTTTTTTGTTAAAAATTTGATTTCTTT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCAATGAAAAACGCAGCGAAATGCGATAAGAAATGTGAATTGCAAAATTCAGGGAATCTTCGAATCTTTGAACGCACTTTGGGCCTGGCAGTTTTCTGCCGGGCATGCCTGCCCAAGCGCCATTTCCCCACTCAA-AACT---CCTTT-GTTCTTGGGGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCAAAATGCATCGG-TTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis ecuadoriana CMW22092_FJ151432_Eucalyptus_deglupta_Ecuador' CCATGTGTGAACGTACC----TGTC---TTATAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCGGCAGTATT------------AGTCC-CACCACT-------AAACTC--TTTTTCTATTTTCTTAA-----------TTTCCATTTGCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis ecuadoriana CMW22097_FJ151434_Eucalyptus_deglupta_Ecuador' CCATGTGTGAACGTACC----TGTC---TTATAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCGGCAGTAT-------------AGTCC-CACCACT-------AAACTC--TTTTTCTATTTTCTTAA-----------TTTCCATTTGCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis eucalypticola CMW10000_FJ236722_Eucalyptus_spp_Kwazulu_Natal' CCATGTGTGAACGTACC----TATC--TTTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA--GAGAGGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CACCACTGT-----AAACTC-TTTTTATTATTTTCTAGA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAA------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTACCATCGATGAACAACGCAGCGTAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGCATCATCGAATCTTTGAACGCACATTGCGGCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis eucalypticola CMW11536_FJ236723_Eucalyptus_spp_Kwazulu_Natal' CCATGTGTGAACATACC----TATC--TTTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA--GAGAGGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CACCACTAT-----AAACTC-TTTTTATTATTTTCTAGA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAA------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis fimbriata CMW14799_KC493160_Ipomoea_batatas_North_Carolina' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA--GGGAGGGC----ACCGCTGCCAGCAGTATT------------AGTCT-CACCACTAT-----AAACTC--TTTTATTATTTTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAA------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGCATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis fimbriata CMW1547_AF264904_Ipomoea_batatas_Papua_New_Guinea' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA--GGGAGGGC----ACCGCTGCCAGCAGTATT------------AGTCT-CACCACTAT-----AAACTC--TTTTATTATTTTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAA------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGCATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis fimbriata CMW46734_KY809154_Ipomoea_batatas_Hawaii' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA--GGGAGGGC----ACCGCTGCCAGCAGTATT------------AGTCT-CACCACTAT-----AAACTC--TTTTATTATTTTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAA------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATTATTCTTT-----CTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGCATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis fimbriatomima CMW24174_EF190963_Eucalyptus_hybrid_Venezuela' CCATGTGTGAACGTACC----TATC--TTTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC--TTTTTTTATTTTCTAGA---------TTTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAA------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT---CTTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis fimbriatomima CMW24377_EF190966_Eucalyptus_hybrid_Venezuela' CCATGTGTGAACGTACC----TATC--TTTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC--TTTTTTTATTTTCTAGA---------TTTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAAA------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT---CTTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW44103_Metrosideros_polymorpha_Hawaii_TypeA' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGT----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW44105_Metrosideros_polymorpha_Hawaii_TypeA' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGT----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW44106_Metrosideros_polymorpha_Hawaii_TypeA' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGT----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW44107_Metrosideros_polymorpha_Hawaii_TypeA' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGT----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW46741_Metrosideros_polymorpha_Hawaii_TypeC' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTTTGTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW46743_Metrosideros_polymorpha_Hawaii_TypeA' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGT----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW46743_Metrosideros_polymorpha_Hawaii_TypeC' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTTTGTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW47139_Metrosideros_polymorpha_Hawaii_TypeA' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGT----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW47139_Metrosideros_polymorpha_Hawaii_TypeC' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTTTGTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW47152_Metrosideros_polymorpha_Hawaii_TypeA' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGT----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW47152_Metrosideros_polymorpha_Hawaii_TypeC' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTTTGTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW47857_KY809158_Metrosideros_polymorpha_Hawaii_TypeC' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTTTGTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis lukuohia CMW44102_KP203957_Metrosideros_polymorpha_Hawaii_TypeA' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGT----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis mangicola CMW14797_AY953382_Mangifera_indica_Brazil' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCGGTAT-------------AGTCT-CACCACTAT----AAAACTC--TTTTATTATTTTCTAGA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT---CTTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis mangicola CMW28907_FJ200257_Mangifera_indica_Brazil' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCGGTAT-------------AGTCT-CACCACTAT----AAAACTC--TTTTATTATTTTCTAGA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAACAACGCAGCGAAATGCGATAAGTAATGTGAATTGCACAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT---CTTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis manginecans CMW13851_NR119532_Mangifera_indica_Oman' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA--GAGAGGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CACCACTAT----AAAACTC--TTTTATTATTTTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT---CTTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis manginecans CMW13852_AY953384_Mangifera_indica_Oman' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA--GAGAGGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CACCACTAT----AAAACTC--TTTTATTATTTTCTAGA----------TTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT---CTTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis mangivora CMW15052_EF433298_Mangifera_indica_Brazil' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC--TTTTTCTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATT---ATTCT--TTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGCATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis mangivora CMW27305_FJ200262_Mangifera_indica_Brazil' CCATGTGTGAACATACC----TATC--TTTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC--TTTTTCTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GATT---ATTCT--TTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGCATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis neglecta CMW17808_NR137552_Eucalyptus_grandis_Colombia' CCATGTGTGAACGTACC----TGTC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGG-----ACCGCTGCCGGCAGTAT-------------AGTCC-CACCACT-------AAACTC--TTTTTCTATTTTCTTAA-----------TTTCCATTTGCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis neglecta CMW18194_EF127991_Eucalyptus_grandis_Colombia' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGG-----ACCGCTGCCGGCAGTAT-------------AGTCC-CACCACT-------AAACTC--TTTTTCTATTTTCTTAA-----------TTTCCATTTGCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis papillata CMW10844_AY177238_Coffea_arabica_Colombia' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGTA---ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC--TTTTTCTATTTTCTTAA-----------TTTCCATTTGCTGAGTGGCATAA-CTATAAAAAAAA-----GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT--CCCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT---CCCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis papillata CMW8856_NR_119486_AY233867_Citrus_x_Tangelo_Colombia' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGTA---ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC--TTTTTCTATTTTCTTAA-----------TTTCCATTTGCTGAGTGGCATAA-CTATAAAAAAAA-----GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT--CCCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT---CCCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis species CMW14794_AY526298_Xanthosoma_C._esculenta_Cuba' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGA----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGACAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis species CMW14805_AY526297_Xanthosoma_sagittifolium_Costa_Rica' ?CATGTGTGAACATACC----TATC---TTGTAGTG-AGATGAA---TTGCTGTTTTGGTGG------------TAGGA----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGACAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis species CMW48500_AY526294_Syngonium_spp_Hawaii' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGACGAA---TTGCTGTTTTGGTGG------------TAGGA----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis species CMW50456_Syngonium_spp_Hawaii' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGACGAA---TTGCTGTTTTGGTGG------------TAGGA----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis species CMW48508_AY526295_Syngonium_spp_Florida' CCATGTGTGAACATACC----TATC---TTGTAGTG-AGACGAA---TTGCTGTTTTGGTGG------------TAGGA----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTATATA----------AGTCT-CGCCACTGT-----AAACTC----TTACTATTTTCTTAA-----------TTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis platani CMW14802_DQ520630_Platanus_occidentalis_North_Carolina' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC----TTATATTTTTCCAGA---------TTTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACC---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis platani CMW1896_AF395681_Platanus_spp_Switzerland' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC----TTATATTTTTCCAGA---------TTTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis platani CMW2219_AF395679_Platanus_spp_France' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC----TTATATTTTTCCAGA---------TTTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis platani CMW23450_KJ631107_Platanus_occidentalis_Greece' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC----TTATATTTTTCCAGA---------TTTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis platani CMW9499_Platanus_spp_Italy' CCATGTGTGAACGTACC----TATC---TTGTAGTG-AGATGAA----TGCTGTTTTGGTGG------------TAGGG----CCCTTCTGAA------GGGC----ACCGCTGCCAGCAGTAT-------------AGTCT-CGCCACTGT-----AAACTC----TTATATTTTTCCAGA---------TTTTTTCATT-GCTGAGTGGCATAA-CTATAAAAAA-------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGGACT---CCTTT-GTTCTTGGCGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTATAAAATTTCT---AATTTTTACACTTTGAAGT 'Ceratocystis cercfabiensis Eucalyptus_spp_China' CCATGTGTGAACGTAACC---TATC---TTGTGAAG-AGATGGACAAAAGCTGCTTTGGTAG-----------TTGGGGGGCACCCTTCTGTAAAGAAGTTTTCTTTCCCACTACCAGCAGTATA------------AGTCATCTTCTTCACCACTAAAACTC--TTTTATTTTTTGTTAGAAA-----TTTGATTTCATT-GCTGAGTGGCATAAACTATAAAAA--------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACT---CTTTT--TTCTTGGTGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTACAAAA??????????????????????????? 'Ceratocystis cercfabiensis CMW43029_KP727592_KP727593_KP727594_Eucalyptus_species_China_Clone_K_ITS' ??ATGTGTGAACGTAACC---TATC---TTGTGAAG-AGATGGACAAAAGCTGCTTTGGTAG-----------TTGGGGGGCACCCTTCTGTAAAGAAGTTTTCTTTCCCACTACCAGCAGTATA------------AGTCATCTTCTTCACCACTAAAACTC--TTTTATTTTTTGTTAGAAA-----TTTGATTTCATT-GCTGAGTGGCATAAACTATAAAAA--------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACT---CTTTT--TTCTTGGTGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTACAAAA??????????????????????????? 'Ceratocystis huliohia CMW46738_KY809156_Metrosideros_polymorpha_Hawaii' CCATGTGTGAACGTAAAC---TATC---TTGTGAAG-AGATGAACAAAAGCTGCCTTGGTAG-----------TTGGGGGG-CCCCTTCTATAA---GGTTTT-----CCACTACCAGCAGTATA------------AGTAATCTTCTTCACCACTAAAACTCTTTTATTTTTTTTGTTAGAAA-----TTTGATTTCATT-GCTGAGTGGCATAAACTATAAAAA--------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACT---CTTTT---TCTTGGTGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTACAAAATTTCTTCTAATTTTTACACTTTGAAGT 'Ceratocystis huliohiae CMW47143_KY809155_Metrosideros_polymorpha_Hawaii' CCATGTGTGAACGTAAAC---TATC---TTGTGAAG-AGATGAACAAAAGCTGCCTTGGTAG-----------TTGGGGGG-CCCCTTCTATAA---GGTTTT-----CCACTACCAGCAGTATA------------AGTAATCTTCTTCACCACTAAAACTCTTTTATTTTTTTTGTTAGAAA-----TTTGATTTCATT-GCTGAGTGGCATAAACTATAAAAA--------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAAGAACT---CTTTT---TCTTGGTGTTGGAGGTCCTGTTCT----CCCCTGAACAGGCCGCCGAAATGTATCGG-CTGTTA----TACTTG-CCAACTCCCCTGTGTAGTACAAAATTTCTTCTAATTTTTACACTTTGAAGT 'Ceratocystis albifundus CMW4068_DQ520638_Acacia_mearnsii_Kwazulu_Natal' CCATGTGTGAACATACCC---TGTCTTTTGGTGAAG------ACGGAAAGCTGCCTTGGTGGGTGTCTGTAGTGGTGTTAACCTCTTTTTATAA---GGGGGC--AGCCCACTACCGCTAGCCACCAGCAGCATACAAGTCTTTT-----ACCACTATAAACCTTCTGTATATTTTTTAAAA-------TTTTTAAAAATT-GCTGAGTGGCATAA-CTATAAAAAAA------GTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTAGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGGCAGTATTCTGCCAGGCATGCCTGTCCGAGCGTCATTTCACCACTCAA-GACT-TGCTTTA-GTTTT-GGTGTTGGAGGTCCTGTTCTTACCCTTCCGAACAGGCCGCCGAAATGCATCGG-CTGTTATTTTTACTTG-CCAACTCCCCTGTGTAGTACAAGATTTTTT-AAATTTTTACGCTTTGGAGT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 549; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 549; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 549; END; BEGIN TREES; Title Ceratocystis_LAC_clade_ITS; ID 0160448df2a18; LINK Taxa = Taxa; TRANSLATE [0] 1 'Ceratocystis adelpha CMW14809_KR476787_Theobroma_cacao_Ecuador', [1] 2 'Ceratocystis adelpha CMW15051_AY157951_Theobroma_cacao_Costa_Rica', [2] 3 'Ceratocystis cacaofunesta CMW14798_AY157952_Theobroma_cacao_Costa_Rica', [3] 4 'Ceratocystis cacaofunesta CMW26375_AY157953_Theobroma_cacao_Brazil', [4] 5 'Ceratocystis colombiana CMW5751_NR119483_Coffea_arabica_Colombia', [5] 6 'Ceratocystis colombiana CMW5761_AY177234_Coffea_arabica_Colombia', [6] 7 'Ceratocystis curvata CMW22435_FJ151437_Eucalyptus_deglupta_Ecuador', [7] 8 'Ceratocystis curvata CMW22442_NR137018_Eucalyptus_deglupta_Ecuador', [8] 9 'Ceratocystis diversiconidia CMW22445_FJ151440_Terminalia_ivorensis_Ecuador_', [9] 10 'Ceratocystis diversiconidia CMW22448_FJ151441_Terminalia_ivorensis_Ecuador', [10] 11 'Ceratocystis ecuadoriana CMW22092_FJ151432_Eucalyptus_deglupta_Ecuador', [11] 12 'Ceratocystis ecuadoriana CMW22097_FJ151434_Eucalyptus_deglupta_Ecuador', [12] 13 'Ceratocystis eucalypticola CMW10000_FJ236722_Eucalyptus_spp_Kwazulu_Natal', [13] 14 'Ceratocystis eucalypticola CMW11536_FJ236723_Eucalyptus_spp_Kwazulu_Natal', [14] 15 'Ceratocystis fimbriata CMW14799_KC493160_Ipomoea_batatas_North_Carolina', [15] 16 'Ceratocystis fimbriata CMW1547_AF264904_Ipomoea_batatas_Papua_New_Guinea', [16] 17 'Ceratocystis fimbriata CMW46734_KY809154_Ipomoea_batatas_Hawaii', [17] 18 'Ceratocystis fimbriatomima CMW24174_EF190963_Eucalyptus_hybrid_Venezuela', [18] 19 'Ceratocystis fimbriatomima CMW24377_EF190966_Eucalyptus_hybrid_Venezuela', [19] 20 'Ceratocystis lukuohia CMW44103_Metrosideros_polymorpha_Hawaii_TypeA', [20] 21 'Ceratocystis lukuohia CMW44105_Metrosideros_polymorpha_Hawaii_TypeA', [21] 22 'Ceratocystis lukuohia CMW44106_Metrosideros_polymorpha_Hawaii_TypeA', [22] 23 'Ceratocystis lukuohia CMW44107_Metrosideros_polymorpha_Hawaii_TypeA', [23] 24 'Ceratocystis lukuohia CMW46741_Metrosideros_polymorpha_Hawaii_TypeC', [24] 25 'Ceratocystis lukuohia CMW46743_Metrosideros_polymorpha_Hawaii_TypeA', [25] 26 'Ceratocystis lukuohia CMW46743_Metrosideros_polymorpha_Hawaii_TypeC', [26] 27 'Ceratocystis lukuohia CMW47139_Metrosideros_polymorpha_Hawaii_TypeA', [27] 28 'Ceratocystis lukuohia CMW47139_Metrosideros_polymorpha_Hawaii_TypeC', [28] 29 'Ceratocystis lukuohia CMW47152_Metrosideros_polymorpha_Hawaii_TypeA', [29] 30 'Ceratocystis lukuohia CMW47152_Metrosideros_polymorpha_Hawaii_TypeC', [30] 31 'Ceratocystis lukuohia CMW47857_KY809158_Metrosideros_polymorpha_Hawaii_TypeC', [31] 32 'Ceratocystis lukuohia CMW44102_KP203957_Metrosideros_polymorpha_Hawaii_TypeA', [32] 33 'Ceratocystis mangicola CMW14797_AY953382_Mangifera_indica_Brazil', [33] 34 'Ceratocystis mangicola CMW28907_FJ200257_Mangifera_indica_Brazil', [34] 35 'Ceratocystis manginecans CMW13851_NR119532_Mangifera_indica_Oman', [35] 36 'Ceratocystis manginecans CMW13852_AY953384_Mangifera_indica_Oman', [36] 37 'Ceratocystis mangivora CMW15052_EF433298_Mangifera_indica_Brazil', [37] 38 'Ceratocystis mangivora CMW27305_FJ200262_Mangifera_indica_Brazil', [38] 39 'Ceratocystis neglecta CMW17808_NR137552_Eucalyptus_grandis_Colombia', [39] 40 'Ceratocystis neglecta CMW18194_EF127991_Eucalyptus_grandis_Colombia', [40] 41 'Ceratocystis papillata CMW10844_AY177238_Coffea_arabica_Colombia', [41] 42 'Ceratocystis papillata CMW8856_NR_119486_AY233867_Citrus_x_Tangelo_Colombia', [42] 43 'Ceratocystis species CMW14794_AY526298_Xanthosoma_C._esculenta_Cuba', [43] 44 'Ceratocystis species CMW14805_AY526297_Xanthosoma_sagittifolium_Costa_Rica', [44] 45 'Ceratocystis species CMW48500_AY526294_Syngonium_spp_Hawaii', [45] 46 'Ceratocystis species CMW50456_Syngonium_spp_Hawaii', [46] 47 'Ceratocystis species CMW48508_AY526295_Syngonium_spp_Florida', [47] 48 'Ceratocystis platani CMW14802_DQ520630_Platanus_occidentalis_North_Carolina', [48] 49 'Ceratocystis platani CMW1896_AF395681_Platanus_spp_Switzerland', [49] 50 'Ceratocystis platani CMW2219_AF395679_Platanus_spp_France', [50] 51 'Ceratocystis platani CMW23450_KJ631107_Platanus_occidentalis_Greece', [51] 52 'Ceratocystis platani CMW9499_Platanus_spp_Italy', [52] 53 'Ceratocystis cercfabiensis Eucalyptus_spp_China', [53] 54 'Ceratocystis cercfabiensis CMW43029_KP727592_KP727593_KP727594_Eucalyptus_species_China_Clone_K_ITS', [54] 55 'Ceratocystis huliohia CMW46738_KY809156_Metrosideros_polymorpha_Hawaii', [55] 56 'Ceratocystis huliohiae CMW47143_KY809155_Metrosideros_polymorpha_Hawaii', [56] 57 'Ceratocystis albifundus CMW4068_DQ520638_Acacia_mearnsii_Kwazulu_Natal'; TREE Imported_tree_1 = ((((((((((1:2,2:0.0):6,(3:0.0,4:2):6):5,(((7:0.0,8:1):23,(13:5,14:2):4):2,(15:0.0,16:0.0,17:0.0):2):5):8,(((((11:1,12:0.0):1,(39:0.0,40:1):1):6,(41:0.0,42:0.0):4):2,(((20:0.0,21:0.0,22:0.0,23:0.0,25:0.0,27:0.0,29:0.0,32:0.0):1,(24:0.0,26:0.0,28:0.0,30:0.0,31:0.0):1,((43:0.0,44:0.0):1,(45:0.0,46:0.0,47:0.0):1):1):8,(37:0.0,38:1):6):1):4,((18:0.0,19:0.0):2,(48:1,49:0.0,50:0.0,51:0.0,52:0.0):7):1):3):2,(33:0.0,34:2):2):2,(35:0.0,36:0.0):2):3,(5:0.0,6:0.0):13):15,(9:2,10:0.0):42):27,((53:0.0,54:0.0):14,(55:0.0,56:0.0):7):18):66,57:38); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1527422389936; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2383119883559972713; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7067948977818683615; mqVersion 340; checksumv 0 3 2331139018 null getNumChars 549 numChars 549 getNumTaxa 57 numTaxa 57 short true bits 15 states 15 sumSquaresStatesOnly 635896.0 sumSquares 635896.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 212; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1377 695; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2383119883559972713 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0160448df2a18; toggleUseWeights off; endTell; setAssignedID 14189.1527422371431.270751843685101390; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1165 623; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7067948977818683615 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 441; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1165 623; setLocation 0 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;