#NEXUS [written Tue Apr 03 17:35:54 EEST 2018 by Mesquite version 3.40 (build 877) at DESKTOP-GB7QG3L/172.17.59.48] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=34; TAXLABELS Skeletocutis_calida_HOLOTYPE_US_FL_KY953140_ Skeletocutis_coprosmae_AU_TAS_KY953115_ Skeletocutis_cummata_FI_KY953116_ Skeletocutis_cummata_HOLOTYPE_CN_JL_KY953113_ Skeletocutis_cummata_RU_KHA_KY953122_ Skeletocutis_cummata_RU_KHA_KY953123_ Skeletocutis_cummata_RU_KHA_KY953124_ Skeletocutis_futilis_HOLOTYPE_FI_KY953128_ Skeletocutis_impervia_HOLOTYPE_UG_KY953112_ Skeletocutis_ipuletii_HOLOTYPE_UG_KY953111_ Skeletocutis_lepida_HOLOTYPE_JP_KY953133_ Skeletocutis_lepida_RU_KHA_KY953126_ Skeletocutis_lepida_RU_KHA_KY953127_ Skeletocutis_nemoralis_FI_KY953119_ Skeletocutis_nemoralis_HOLOTYPE_FI_KY953118_ Skeletocutis_nemoralis_PL_KY953121_ Skeletocutis_nivea_sensu_typi_CN_BJ_KY953117_ Skeletocutis_nivea_sensu_typi_EPITYPE_ID_JT_KY953135_ Skeletocutis_nivea_sensu_typi_ID_JT_KY953136_ Skeletocutis_nivea_sensu_typi_MY_KY953132_ Skeletocutis_ochroalba_CA_AB_KY953137_ Skeletocutis_ochroalba_CA_AB_KY953138_ Skeletocutis_semipileata_CN_JL_KY953110_ Skeletocutis_semipileata_EPITYPE_US_NY_KY953129_ Skeletocutis_semipileata_FI_KY953131_ Skeletocutis_semipileata_PL_KY953120_ Skeletocutis_semipileata_RU_KHA_KY953125_ Skeletocutis_semipileata_US_MA_KY953134_ Skeletocutis_semipileata_US_NY_KY953130_ Skeletocutis_semipileata_US_TN_KY953139_ Skeletocutis_unguina_HOLOTYPE_CN_YN_KY953141_ Skeletocutis_yuchengii_CN_YN_KY953114_ Skeletocutis_yuchengii_HOLOTYPE_CN_YN_KY953109_ Tyromyces_sp_OUTGROUP_JN710734_ ; END; BEGIN CHARACTERS; TITLE tef1_sequence_alignment_of_Skeletocutis_nivea_species_complex; DIMENSIONS NCHAR=881; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Skeletocutis_calida_HOLOTYPE_US_FL_KY953140_ ??????????????GGGTGGTACTGGTGAGTTCGAGGCCGGTATTTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTTGGTGTCAGGCAGCTCATTGTCGCCGTCAACAAAATGGACACCACGAAGGTTTGTCAAMGCCTTCATTACTCTCGGAAGTTAAGCCTTCGTCCTGATATCTTGTGGC----TTATAGTGGAGCGAAGACCGTTTCAATGAGATCGTCAAGGAGGTTCAGGGGTTCGTCAAAAAGGTCGGCTACAACCCCAAGTCTGTTGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAATATGTTGGAGGATTCCCCTAAGTGAGTTGTAGACGC--ATAGTTGGTGTCCTA-CGGTGTTATTGACCGAGATTCACAGCATGCCTTGGTACAAGGGTTGGACCAAGGAGACCAAGGCTGGCGTTGTCAAGGGCAAAACCCTGCTAGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACTACTGAGGTAAAGTCCGTCGAGATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTGAGGGAGTCCACTACAACAAAGTTTYTCTTAATTTGTGAYTAACCTACGTCTTTGAATAGGAACGTCTCTGTCAAAGATATCCGCCGTGGAAACGTTGCCTCCGATTCGAAGAACGACCCAGCCAAGGAGGCAGCATCCTTCAACGCTCAGGTCATC Skeletocutis_coprosmae_AU_TAS_KY953115_ ??????ATCATTGCGGCTGGTACAGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTTCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCGTAAAGGTATGTCAACACCGTCGTGACAATC---------GCTTTTGTCCTGACATCTTGCGGC----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAGGGAGACGATGGGCTTCATCAAAAAAGTTGGTTACAATCCCAAGGCTGTTGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCCAGCAAGTGAG-TGTAGTTGC--ATAATTGGTGTTCTA-TAATGTTATTGACTGAGATTCACAGCATGCCTTGGTACAAGGGTTGGACTAGAGAGACCAAGGCTGGCGTTGTTAAGGGTAAGACCCTCCTCGACGCCATTGATGCCATCGAGCCTCCTGTTCGTCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTACAAAATCGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCTGGAATGGTCGTCAGTTTTGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTCGAAATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAATGTCGGCTTCAACGTGAAGTAAGAG--TCCATCAGCCCAAAGCTTGCCTCAATTTGTGTCTCACCTACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGTGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAAGGAAGCAGCATCCTTCAACGCTCAGGTCATC Skeletocutis_cummata_FI_KY953116_ ATCCTTATCATTGCGGCTGGTAATGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACGAAGGTATGCCCACACCGTCGTTACAATCGGGAGTTTAGCTTTGGTCCTGACATTTTGCGGC----GGAYAGTGGAGTGAAGACCGTTTCAATGAGATCGTCAAGGAGACGAACACCTTCATCAAAAAGGTTGGCTACAATCCCAAGGCTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCGAGCAAGTGAG-TGTAGACGT--TTAGCTGGTGTTCTA-CAATGTTATTGACTGAGGTTCACAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTTAAGGGCAAGACCCTCTTGGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTACAAGATTGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGATCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCTGTTGAGATGCATCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATAACCTCAATGCTTGCCTCAATTTGTGTCTCACCCACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGCGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAAGGAGGCAGCATCCTTCAACGCTCAGGTCATC Skeletocutis_cummata_HOLOTYPE_CN_JL_KY953113_ ----TTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACGAAGGTATGCCCACACCGTCGTTACAATCGGGAGTTTAGCTTTGGTCCTGACATTTTGCGGC----GGATAGTGGAGTGAAGACCGTTTCAATGAGATCGTCAAGGAGACGAACACCTTCATCAAAAAGGTTGGCTACAATCCCAAGGCTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCGAGCAAGTGAG-TGTAGACGT--TTAGCTGGTGTTCTA-CAATGTTATTGACTGAGGTTCACAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTTAAGGGCAAGACCCTCTTGGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTACAAAATTGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGATCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCTGTTGAGATGCATCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATAACCTCAATGCTTGCCTCAATTTGTGTCTCACCCACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGCGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAAGGAGGCAGCATCCTTCAACGCTCAKGTCATC Skeletocutis_cummata_RU_KHA_KY953122_ ATCCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACGAAGGTATGCCCACACCGTCGTTACAATCGGGAGTTTAGCTTTGGTCCTGACATTTTGCGGC----GGATAGTGGAGTGAAGACCGTTTCAATGAGATCGTCAAGGAGACGAACACCTTCATCAAAAAGGTTGGCTACAATCCCAAGGCTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCGAGCAAGTGAG-TGTAGACGT--TTAGCTGGTGTTCTA-CAATGTTATTGACTGAGGTTCACAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTTAAGGGCAAGACCCTCTTGGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTACAAGATTGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGATCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCTGTTGAGATGCATCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATAACCTCAATGCTTGCCTCAATTTGTGTCTCACCCACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGCGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAAGGAGGCAGCATCCTTCAACGCTCAGGTCATC Skeletocutis_cummata_RU_KHA_KY953123_ ATCCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACGAAGGTATGCCCACACCGTCGTTACAATCGGGAGTTTAGCTTTGGTCCTGACATTTTGCGGC----GGATAGTGGAGTGAAGACCGTTTCAATGAGATCGTCAAGGAGACGAACACCTTCATCAAAAAGGTTGGCTACAATCCCAAGGCTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCGAGCAAGTGAG-TGTAGACGT--TTAGCTGGTGTTCTA-CAATGTTATTGACTGAGGTTCACAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTTAAGGGCAAGACCCTCTTGGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTACAAGATTGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGATCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCTGTTGAGATGCATCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATAACCTCAATGCTTGCCTCAATTTGTGTCTCACCCACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGCGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAAGGAGGCAGCATCCTTCAACGCTCA??????? Skeletocutis_cummata_RU_KHA_KY953124_ ATCCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACGAAGGTATGCCCACACCGTCGTTACAATCGGGAGTTTAGCTTTGGTCCTGACATTTTGCGGC----GGATAGTGGAGTGAAGACCGTTTCAATGAGATCGTCAAGGAGACGAACACCTTCATCAAAAAGGTTGGCTACAATCCCAAGGCTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCGAGCAAGTGAG-TGTAGACGT--TTAGGTGGTGTTCTA-CAATGTTATTGACTGAGGTTCACAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTTAAGGGCAAGACCCTCTTGGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTACAAGATTGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGATCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCTGTTGAGATGCATCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATAACCTCAATGCTTGCCTCAATTTGTGTCTCACCCACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGCGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAAGGAGGCAGCATCCTTCAACGCTCAGGTCATC Skeletocutis_futilis_HOLOTYPE_FI_KY953128_ ATCCTTATCATCGCGGGTGGTACTGGTGAGTTCGAGGCTGGTATATCCAAAGACGGCCAAACTCGCGAGCATGCTTTGCTTGCCTTCACCCTTGGTGTCAGGCAGCTCATCGTTGCCGTCAACAAGATGGACACCACCAAGGTATGCCGACACCGTCACTACGTTTAGGGGTTTAGCCTTCGTCCTGACATGTCGCGGC----TCACAGTGGAGCGAAGACCGTTTCAACGAGATCGTTAAGGAAACGTCAAACTTCATCAAAAAAGTTGGCTACAACCCCAAGGCTGTCGCCTTCGTTCCTATCTCCGGCTGGCATGGTGACAATATGTTGGAAGAGTCCCCGCAGTGAG-TGTAGGCGC--GTAGTTGGTGTTCAA-TAGTTTTACTGACTGAAATACGCAGCATGCTATGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTCGTTAAGGGTAAGACCCTCCTAGACGCCATAGACGCCATTGAGCCCCCTGTTCGTCCCTCCGACAAACCTCTTCGCCTCCCGCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCCGTCGGTCGTGTTGAGACTGGTGTCATCAAGGCTGGAATGGTCGTTAGCTTTGCTCCGAGCAATGTCACTACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTTGTTGAGGGTGTCCCTGGTGACAATGTCGGTTTCAACGTGAAGTAAGAA--TC---CTCCAAATTTTTGGCCTCAATTTGCGTCTCACGTATGTATTTGAATAGGAACGTCTCCGTCAAGGATATTCGCCGTGGAAATGTCGCTTCCGATTCGAAGAACGACCCCGCCAAGGAGGCAGCGTCCTTCAACGCTCAGGTCATC Skeletocutis_impervia_HOLOTYPE_UG_KY953112_ ATCCTTATCATTGCGGGTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTACGTCAATGCCGTCATTACAATT---------GCTCTTACCCTGACATCTTGCGGC----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACAAACTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCCCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCCCCCAAGTGAG-TGTAGACAC--ATAGTTGGTGTTCTA-T-ATGTTATTGACTGAGATCTACAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTCTCAAGGGTAAGACCCTTCTAGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTTCGCCTTCCGCTCCAGGATGTCTACAAAATCGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCATCCCTGAAGTGAAGTCCGTTGAGATGCACCACGAGC????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Skeletocutis_ipuletii_HOLOTYPE_UG_KY953111_ ATCCTTATCATTGCGGGTGGTACTGGTGAGTTCGAAGCTGGTATCTCTAAGGACGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTACGTCAATGCCGTCATTACAATC---------GCTCTTGTCCTGACATCTTGCGGC----GAATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGTCAGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAATCCCCCAAGTGAG-TGTAGATAT--ATAGTTGGTGTTCTA-T-ATGTTATTCACAGAGATTCACAGTATGCCTTGGTTCAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTCTCAAGGGTAAGACCCTCCTAGACGCCATTGATGCCATTGAGCCTCCTG?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Skeletocutis_lepida_HOLOTYPE_JP_KY953133_ ATCCTTATCATTGCGGGTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTATGTCAACGCCGTCATTACAATC---------GCTCTTGTCCTGACATCTTGCGGC----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGTCAAACTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTACCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAAGTGAG-TGTAGACAC--ATAATTGGTGTTCTA-T-ATATYATTGACTGAGATCTACAGCATGCTCTGGTTCAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTCAAGGGTAAGACCCTCCTAGACGCCATTGACGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTACAAAATTGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCTGGGATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTTGAGATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATCACCACAAACCTTGCCTCAATATGTGCCTGACC-ACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCG?????????????????????????????????????????????????????????????????????? Skeletocutis_lepida_RU_KHA_KY953126_ ATCCTTATCATTGCGGGTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTATGTCAACGCCGTCATTACAATC---------GCTCTTGTCCTGACATCTTGCGAC----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGTCAAACTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTACCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAAGTGAG-TGTAGACAC--ATAATTGGTGTTCTA-T-ATATTATTGACTGAGATCTACAGCATGCTCTGGTTCAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTCAAGGGTAAGACCCTCCTAGACGCCATTGACGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTACAAAATTGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCTGGGATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTTGAGATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATCACCACAAACCTTGCCTCAATATGTGCCTGACC-ACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGTGGAAACGTCGCCTCCGATTCGAAGAACGACCCTGCTAAGGAGGCAGCATCCTTCAACGCCCAGGTCATC Skeletocutis_lepida_RU_KHA_KY953127_ ATCCTTATCATTGCGGGTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTATGTCAACGCCGTCATTACAATC---------GCTCTTGTCCTGACATCTTGCGGC----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGTCAAACTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTACCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAAGTGAG-TGTAGACAC--ATAATTGGTGTTCTA-T-ATATCATTGACTGAGATCTACAGCATGCTCTGGTTCAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTCAAGGGTAAGACCCTCCTAGACGCCATTGACGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTACAAAATTGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCTGGGATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTTGAGATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATCACCACAAACCTTGCCTCAATATGTGCCTGACC-ACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGTGGAAACGTCGCCTCCGATTCGAAGAACGACCCTGCTAAGGAGGCAGCATCCTTCAACGCCCAGGTCATC Skeletocutis_nemoralis_FI_KY953119_ ??????????????????????????????????????TGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACTCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCGTTACAATCGGGAGTTTAGCTTTTTTCCTGACATTTTGCGGC----GGATAGTGGAGCGAAGATCGTTTCAATGAGATCATCAAGGAGACGAACAACTTCATCAAAAAGGTTGGCTACAATCCCAAGAATGTCGCCTTTGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCGGCCAAGTGAG-TGTAGACGC--ATAGTTGGTGTTCTA-TAATGTTATTGACTGAGATTCACAGCATGCCCTGGTACAAGGGTTGGACCAGAGAGACCAAGGCTGGCGTTATTAAGGGCAAGACCCTCCTAGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAGCCCCTCCGCCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTTGTCAGTTTTGCTCCGAGCAACGTCACTACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATCACCTCAAAGCATGCCTCAATTTGTGTCTCACCCACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGCGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAA??????????????????????????????? Skeletocutis_nemoralis_HOLOTYPE_FI_KY953118_ ?????TATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACTCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCGTTACAATCGGGAGTTTAGCTTTTTTCCTGACATTTTGCGGC----GGATAGTGGAGCGAAGATCGTTTCAATGAGATCATCAAGGAGACGAACAACTTCATCAAAAAGGTTGGCTACAATCCCAAGAATGTCGCCTTTGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCGGCCAAGTGAG-TGTAGACGC--ATAGTTGGTGTTCTA-TAATGTTATTGACTGAGATTCACAGCATGCCCTGGTACAAGGGTTGGACCAGAGAGACCAAGGCTGGCGTTATTAAGGGCAAGACCCTCCTAGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAGCCCCTCCGCCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTTGTCAGTTTTGCTCCGAGCAACGTCACTACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATCACCTCAAAGCATGCCTCAATTTGTGTCTCACCCACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGCGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAATGAGGCAGCATCCTTCAACGCTC???????? Skeletocutis_nemoralis_PL_KY953121_ ?????????????????????????????????????????????????????????????????????????????????????????????GGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCGTTACAATCGGGAGTTTAGCTTTTTTCCTGACATTTTGCGGC----GGATAGTGGAGCGAAGATCGTTTCAATGAGATCATCAAGGAGACGAACAACTTCATCAAAAAGGTTGGCTACAATCCCAAGAATGTCGCCTTTGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCGGCCAAGTGAG-TGTAGACGC--ATAGTTGGTGTTCTA-TAATGTTATTGACTGAGATTCACAGCATGCCCTGGTACAAGGGTTGGACCAGAGAGACCAAGGCTGGCGTTATTAAGGGCAAGACCCTCCTAGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAGCCCCTCCGCCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTTGTCAGTTTTGCTCCGAGCAACGTCACTACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATCACCTCAAAGCATGCCTCAATTTGTGTCTCACCCACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGCGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAATG????????????????????????????? Skeletocutis_nivea_sensu_typi_CN_BJ_KY953117_ ?????????ATTGCGGGTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTACGTCAACGCCGTCATCACAATC---------GCTCTTGACCTGACATCTTGCGGC----GTATAGTGGAGTGAAGACCGTTTCAATGAGATCATCAAGGAGACGACAGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCCGTCAAGTGAG-TTCAGACAC--ATAATTGGTGTTCTA-T-ATGTTATTGACTGAGATCTACAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTCAAGGGTAAGACCCTCCTAGACGCCATTGATGCCATTGAGCCTCCTGTCCGCCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTACAAAATTGGTGGTATCGGGACCGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTTGAGATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTAAAGTAAGAG--TCTATCACCACAAAGCTTGCCTCAGTTTGTGTCTAACC-ACATCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGTGGAAACGTCGCCTCCGATTCGAAGAACGACCCTGCTAAGGAGGCAGCATCCTTCAACGCCCAGGTCATC Skeletocutis_nivea_sensu_typi_EPITYPE_ID_JT_KY953135_ ??????????????GGGTGGTACTGGTGAGTTCGAGGCTGGTATYTCCAAGGACGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTACGTCAACGCCGTCATCACAATC---------GCTCTTGTCCTGACATSTTGCGGC----GTATAGTGGAGYGAAGACCGTTTCAATGAGATCATCAAGGAGACGACAGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCCGTCAAGTGAG-TTCAGACAC--ATAATTGGTGTTCTA-T-ATGTTATTGACCGAGATCYACAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTCAAGGGTAAGACCCTCCTAGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTACAAAATTGGTGGTATCGGGACCGTTCCRGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTTGAGATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCTATCACCACAAAGCTTGCYTCAATTTGTGTCTGACC-ATGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGTGGAAACGTCGCCTCCGATTCGAAGAACGACCCTGCTAAGGAGGCAGCATCCTTCAACGCTCA??????? Skeletocutis_nivea_sensu_typi_ID_JT_KY953136_ ATCCTCATCATTGCGGGTGGTACTGGTGAGTTCGAGGCTGGTATTTCCAAGGACGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTACGTCAACGCCGTCCTCACAATC---------GCTCTTGTCCTGACATGTTGCGGC----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACTGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCTGTCAAGTGAG-TTCAGACAC--ATAATTGGTGTTCTA-T-ATGTTATTGACTGAGATCTACAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTCAAGGGTAAGACCCTCCTAGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCACTCCGCCTTCCGCTCCAGGATGTCTACAAGATCGGTGGTA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Skeletocutis_nivea_sensu_typi_MY_KY953132_ ??????????????GGGTGGTACTGGTGAGTTCGAGGCTGGTATTTCCAAGGACGGYCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTACGTCAACGCCGTCATCACAATC---------GCTGTTGTCCTRACATGTTGCGGC----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACAGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCCGTCAAGTGAG-TTMAGACAC--ATAAYTGGTGTTCTA-T-ATGTTATTGACTGAKATCTRCAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTGTCAAGGGTAAGACCCTCCTAGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTACAAAATYGGTGGTATCGGGACCGTTCCGGTCGGYCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTTGAGATGCACCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCTATCACCAYAAAGCTTGCCTCAATTTGTGTCTGACC-ACGTCTTTGAATAGGAACGTCTCTGTCAAGGATATCCGCCGTGGAAACGTCGCCTCCGATTCGAAGAACGACCCTGCTAAGGAGGCAGCATCCTTCAACGCCCA??????? Skeletocutis_ochroalba_CA_AB_KY953137_ ATCCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCGGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTTCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTGGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACATTGTCATTACAATCGGGAGTTCAGTCTTTATT----CATATTGTGGC----GTGTAGTGGAGTGAAGACCGTTTCAATGAGATCATCAAGGAGACAAATAACTTCATCAAAAAGGTTGGCTACAATCCCAAGACCGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCCAGCAAGTGAG-TGTAGATTT--ATAGTTGGTGTTCTA-T----TTATTGACTGAGATTCGCAGCATGCCTTGGTACAAGGGTTGGAGCAGAGAGACTAAGGCTGGCGTTGTTAAGGGCAAGACCCTCCTAGACGCCATTGACGCCATTGAGCCCCCTGTCCGTCCCTCCGACAAACCCCTCCGCCTTCCACTCCAGGATGTGTATAAAATTGGTGGTATCGGTACGGTTCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTTGTTACTTTCGCTCCGAGCAACGTCACCACTGAGGTGAAGTCCGTCGAGATGCATCACGAGCAGCTCGTYGAGGGTCTCCCTGGTGACAACGTCGGCTTCAACGTGAAGTAAGAG--TCCATCACCTCAAAGCTTGCCTCAATTTGTGTCTCACCTACGTTTTTGGATAGGAACGTCTCTGTCAAGGATATCCGCCGTGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAAGGAGGCAGCATCCTTCAACGCTCAGGTCATC Skeletocutis_ochroalba_CA_AB_KY953138_ ATCCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCGGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTTCTTGCCTTCACCCTCGGTGTCAGGCAGCTCATTGTGGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACATTGTCATTACAATCGGGAGTTCAGTCTTTATT----CATATTGTGGC----GTGTAGTGGAGTGAAGACCGTTTCAATGAGATCATCAAGGAGACAAATAACTTCATCAAAAAGGTTGGCTACAATCCCAAGACCGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCCAGCAAGTGAG-TGTAGATTT--ATAGTTGGTGTTCTA-T----TTATTGACTGAGATTCGCAGCATGCCTTGGTACAAGGGTTGGAGCAGAGAGACTAAGGCTGGCGTTGTTAAGGGCAAGACCCTCCTAGACGCCATTGACGCCATTGAGCCCCCTGTCCGTCCCTCCGACAAACCC?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Skeletocutis_semipileata_CN_JL_KY953110_ ATTCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTCGCCTTCACTCTCGGTGTCAGGCAGCTCATCGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCAATACAATCGGGAGTTCAGTCTTTGTCCTGACACCTTGCGGT----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACGGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAATCCCCCAAGTAAG-TTTAGACGC--ATAGTTGGAGTTCTGATAGTGTTATTGACTGAGATTCACAGCATGCTATGGTACAAGGGTTGGAGCAGAGAGACCAAGGCCGGCGTTGTGAAGGGTAAGACCCTTCTAGACGCTATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTCCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTCGAGGGTCTCCCTGGAGACAATGTCGGCTTTAACGTGAAGTAAGAG--TC---CACCACAAAGCTTGGCTCAATTTGTGTCTCACACACGTCTTTGAATAGGAACGTCTCGGTCAAAGATATCCGCCGTGGAAACGTCGCGTCCGATTCAAAGAACGACCCCGCCAAAGAAGCGGCATCCTTCAACGCTCAGGTCATC Skeletocutis_semipileata_EPITYPE_US_NY_KY953129_ ATTCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTCGCCTTCACTCTCGGTGTCAGGCAGCTCATCGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCAATACAATCGGGAGTTCAGTCTTTGTCCTGACACCTTGCGGT----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACGGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAATCCCCCAAGTAAG-TTTAAACGC--ATAGTTGGAGTTTTAACAGTGTTATTGACTGAGATTCACAGCATGCTATGGTACAAGGGTTGGAGCAAAGAGACCAAGGCCGGTGTTGTGAAGGGTAAGACCCTTCTAGACGCTATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTCCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTCGAGGGTCTCCCTGGAGACAATGTCGGCTTTAACGTGAAGTAAGAG--TT---CACCACAAAGCTTGGCTCAATTTGTGTCTCACACACGTCTTTGAATAGGAACGTCTCGGTCAAAGATATCCGCCGTGGAAACGTCGCTTCCGATTCAAAGAACGACCCCGCCAAAGAAGCAGCATCCTTCAACGCTCAGGTCATT Skeletocutis_semipileata_FI_KY953131_ ATTCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTCGCCTTCACTCTCGGTGTCAGGCAGCTCATCGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCAATACAATCGGGAGTTCAGTCTTTGTCCTGACACCTTGCGGT----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACGGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAATCCCCCAAGTAAG-TTTAGACGC--ATAGTTGGAGTTCTGATAGTGTTATTGACTGAGATTCACAGCATGGGATGGTACAAGGGTTGGAGCAGAGAGACCAAGGCCGGCGTTGTGAAGGGTAAGACCCTTCTAGACGCTATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTCCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTCGAGGGTCTCCCTGGAGACAATGTCGGCTTTAACGTGAAGTAAGAG--TC---CACCACAAAGCTTGGCGCAATTTGTGTCTCACACACGTCTTT-AATAGGAACGTCTCGGTCAAAGATATCCGCCGTGGAAACGTCGCTTCCGATTCAAAGAACGACCCCGCCAAAGAAGCAGCATCCTTCAACGCTCAGGTCATC Skeletocutis_semipileata_PL_KY953120_ ATTCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTCGCCTTCACTCTCGGTGTCAGGCAGCTCATCGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCAATACAATCGGGAGTTCAGTCTTTGTCCTGACACCTTGCGGT----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACGGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAATCCCCCAAGTAAG-TTTAGACGC--ATAGTTGGAGTTCTGATAGTGTTATTGACTGAGATTCACAGCATGGGATGGTACAAGGGTTGGAGCAGAGAGACCAAGGCCGGCGTTGTGAAGGGTAAGACCCTTCTAGACGCTATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTCCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTCGAGGGTCTCCCTGGAGACAATGTCGGCTTTAACGTGAAGTAAGAG--TC---CACCACAAAGCTTGGCGCAATTTGTGTCTCACACACGTCTTT-AATAGGAACGTCTCGGTCAAAGATATCCGCCGTGGAAACGTCGCTTCCGATTCAAAGAACGACC?????????????????????????????????????? Skeletocutis_semipileata_RU_KHA_KY953125_ ATTCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTCGCCTTCACTCTCGGTGTCAGGCAGCTCATCGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCAATACAATCGGGAGTTCAGTCTTTGTCCTGACACCTTGCGGT----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACGGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAATCCCCCAAGTAAG-TTTAGACGC--ATAGTTGGAGTTCTGATAGTGTTATTGACTGAGATTCACAGCATGCTATGGTACAAGGGTTGGAGCAGAGAGACCAAGGCCGGCGTTGTGAAGGGTAAGACCCTTCTAGACGCTATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTCCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTCGAGGGTCTCCCTGGAGACAATGTCGGCTTTAACGTGAAGTAAGAG--TC---CACCACAAAGCTTGGCTCAATTTGTGTCTCACACACGTCTTTGAATAGGAACGTCTCGGTCAAAGATATCCGCCGTGGAAACGTCGCGTCCGATTCAAAGAACGACCCCGCCAAAGAAGCGGCATCCTTCAACGCTCAGGTCATC Skeletocutis_semipileata_US_MA_KY953134_ ??????????TTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTCGCCTTCACTCTCGGTGTCAGGCAGCTCATCGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCAATACAATCGGGAGTTCAGTCTTTGTCCTGACACCTTGCGGT----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACGGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAATCCCCCAAGTAAG-TTTAAACGC--ATAGTGGGAGTTTTAACAGTGTTATTGACTGAGATTCACAGCATGCTATGGTACAAGGGTTGGAGCAAAGAGACCAAGGCCGGTGTTGTGAAGGGTAAGACCCTTCTAGACGCTATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTCCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTCGAGGGTCTCCCTGGAGACAATGTCGGCTTTAACGTGAAGTAAGAG--TT---CACCACAAAGCTTGGCTCAATTTGTGTCTCACACACGTCTTTGAATAGGAACGTCTCGGTCAAAGATATCCGCCGTGGAAACGTCGCTTCCGATTCAAAGAACGACCCCGCCAAAGAAGCAGCATCCTTCAACGCTCAGGTCAT? Skeletocutis_semipileata_US_NY_KY953130_ ATTCTTATCATTGCGGCTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTCGCCTTCACTCTCGGTGTCAGGCAGCTCATCGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCAATACAATCGGGAGTTCAGTCTTTGTCCTGACACCTTGCGGT----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACGGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAATCCCCCAAGTAAG-TTTAAACGC--ATAGTTGGAGTTTTAACAGTGTTATTGACTGAGATTCACAGCATGCTATGGTACAAGGGTTGGAGCAAAGAGACCAAGGCCGGTGTTGTGAAGGGTAAGACCCTTCTAGACGCTATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTCCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTCGAGGGTCTCCCTGGAGACAATGTCGGCTTTAACGTGAAGTAAGAG--TT---CACCATAAAGCTTGGCTCAATTTGTGTCTCACACACGTCTTTGAATAGGAACGTCTCGGTCAAAGATATCCGCCGTGGAAACGTCGCTTCCGATTCAAAGAACGACCCCGCCAAAGAAGCAGCATCCTTCAACGCTCAGGTCATT Skeletocutis_semipileata_US_TN_KY953139_ ???????????????????????????GAGTTCGAGGCTGGTATCTCCAAGGATGGCCAAACTCGCGAGCACGCCCTCCTCGCCTTCACTCTCGGTGTCAGGCAGCTCATCGTTGCCGTCAACAAGATGGACACCACGAAGGTATGTCAACACCGTCAATACAATCGGGAGTTCAGTCTTTGTCCTGACACCTTGCGGT----GTATAGTGGAGCGAAGACCGTTTCAATGAGATCATCAAGGAGACGACGGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAATCCCCCAAGTAAG-TTTAAACGC--ATAGTTGGAGTTTTAACAGTGTTATTGACTGAGATTCACAGCATGCTATGGTACAAGGGTTGGAGCAAAGAGACCAAGGCCGGTGTTGTGAAGGGTAAGACCCTTCTAGACGCTATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTTCCGCTCCAGGATGTCTATAAAATCGGTGGTATCGGTACCGTCCCGGTCGGTCGTGTTGAGACTGGTGTTATCAAGGCCGGAATGGTCGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTCGAGATGCACCACGAGCAGCTCGTCGAGGGTCTCCCTGGAGACAATGTCGGCTTTAACGTGAAGTAAGAG--TT---CACCACAAAGCTTGGCTCAATTTGTGTCTCACACACGTCTTTGAATAGGAACGTCTCGGTCAAAGATATCCGCCGTGGAAACGTCGCTTCCGATTCAAAGAACGACCCCGCCAAAGAAGCAGCATCCTTCAACGCTCAGGTCATT Skeletocutis_unguina_HOLOTYPE_CN_YN_KY953141_ ATCCTTATCATTGCGGGTGGTACTGGTGAGTTCGAGGCTGGTATTTCCAAGGACGGCCAAACTCGCGAGCACGCCCTCCTTGCCTTCACCCTCGGTGTCAGGCAACTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTACGTCAATGTTGTCATCACAATC---------GCTCCTGACCTGACCTCTTGCGGC----ATATAGTGGAGCGAAGACCGTTTCAATGAGATCGTCAAGGAGACGTCAAACTTCATCAAAAAGGTTGGCTACAATCCCAAGACCGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGACTCCCCCAAGTGCG-TGTAGACAC--ATCGTTGGTGTTCTA-T-ATGTTATTGACTGAGATCTACAGCATGGCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGCTGGCGTTACCAAGGGTAAGACCCTCCTAGACGCCATTGATGCCATTGAGCCTCCTGTCCGTCCCTCCGACAAACCCCTCCGCCTTCCGCTCCAGGATGTCTACAAGATCGGTGG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Skeletocutis_yuchengii_CN_YN_KY953114_ ?????????????????????????????????????????????????????????????????????????????????????TCACTCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTACGTCAACGCCGTCATTACGATC---------GCTCTTGTCTTGACATTTTGCGGC----GCATAGTGGAGCGAAGACCGTTTCAATGAGATTGTCAAGGAGACGTCAGGCTTCATCAAAAAGGTTGGCTACAATCCCAAGACTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGCTGGAAGACTCCGTTAAGTGAG-TGTAGACAC--ATAATTGGTGTTCTA-T-ATGTTATTGACTGAGATCTACAGCATGCCTTGGTACAAGGGTTGGACCAAAGAGACCAAGGGTGGCGTTGTGAAGGGTAAGACCCTCCTAGACGCGATTGATGCCATTGAGCCTCCGGTCCGTCCCTCCGACAAACCCCTCCGTCTCCCGCTCCAGGATGTCTACAAAATCGGTGGTATCGGTACCGTTCCCGTCGGTCGTGTTGAGACTGGTATTATCAAGGCCGGAATGGTTGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTTGAGATGCATCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGATAACGTCGGCTTTAACGTGAAGTAAGA----CTATCATCACGGAGCTTGCCACACCATGTATCTAACC-ACGTCTTTGCATAGGAACGTCTCTGTCAAGGATATCCGCCGTGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAAGGAGGCAGCATCCTTCAACGCTCAKGTCATC Skeletocutis_yuchengii_HOLOTYPE_CN_YN_KY953109_ ATCCTCATCATTGCGGGTGGTACTGGTGAGTTCGAGGCTGGTATTTCCAAGGACGGCCAAACTCGCGAGCACGCTCTCCTTGCCTTTACCCTCGGTGTCAGGCAGCTCATTGTTGCCGTCAACAAGATGGACACCACAAAGGTACGTCAACGCCGTCATTACAATC---------GATCTTGTCCTGACATCTTGCGGC----GTATAGTGGAGCGAAGACCGTTTCAATGAGATYGTCAAGGAGACGAACAACTTCATCAAAAAGGTTGGCTACAATCCCAAGTCTGTCGCCTTCGTTCCTATCTCCGGCTGGCACGGTGACAACATGCTGGAGGAGTCCCCCAAGTGAG-TTYAGACAC--ATAATTGGTGTTCTA-T-ATGTTATTGACTGAGATCTACAGCATGACTTGGTTCAAGGGTTGGACCAAAGAGACCAAGAGTGGCGTTATGAAGGGTAAGACCCTCCTAGACGCCATTGATGCCATTGAACCTCCTGTCCGTCCCTCCGACAAACCCCTCCGTCTCCCGCTCCAGGATGTCTACAAAATTGGTGGTATCGGTACCGTCCCCGTCGGTCGTGTTGAGACTGGTATTATCAAGGCCGGAATGGTTGTCAGTTTCGCTCCGAGCAACGTCACCACTGAAGTGAAGTCCGTTGAGATGCATCACGAGCAGCTCGTTGAGGGTGTCCCTGGTGATAACGTCGGCTTTAACGTGAAGTAAGA----CTATCATCACGAAGCTTGCCACACCGTGTGTCTAACC-ACGTCTTTGCATAGGAACGTCTCTGTCAAGGATATCCGCCGTGGAAACGTCGCCTCCGATTCGAAGAACGACCCCGCTAAGGAGGCAGCATCCTTCAACGCTCAGGTCATC Tyromyces_sp_OUTGROUP_JN710734_ ATTCTCATCATCGCCGGTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTTGCCTTCACCCTTGGTGTCAGGCAGCTCATCGTTGCCGTCAACAAGATGGACACCACCAAGGTATGTAGCAGCGAATTTGATCT-----------GTTTTTCTCTTGCTAATAAGTTGCTATTCTACAGTGGAGCGAGGACCGTTTCAACGAAATCGTCAAGGAGACTTCCGGCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTTCCCTTCGTCCCCATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAGTCCGTCAAGTGAG-TATATGCGCCATCAACTGCGGAATCA-TTTGTTGATATGCTATCTTTCACAGCATGCCCTGGTATAAGGGCTGGACCAAGGAGACCAAGGCTGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGACGCCATCGAGCCCCCAGTGCGTCCCTCCGACAAGCCCCTCCGTCTTCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGCACTGTGCCCGTCGGCCGTGTTGAGACTGGTGTCATCAAGGCTGGAATGGTCGTGACCTTCGCCCCCACCAACGTCACCACTGAAGTCAAGTCCGTCGAGATGCACCACGAGCAGCTCGTTGAGGGTCTCCCCGGTGACAACGTTGGCTTCAACGTCAAGTATGTA--TTT--TTTCAGCTTTCTTGATTTCAGTTTAATAATATCCATCTCCT---ACAGGAACGTCTCCGTCAAGGATATCCGCCGTGGTAACGTCGCGTCCGACTCCAAGAACGACCCCGCGAAGGAGGCCGCGTCCTTCAACGCTCAGGTCATC ; END; BEGIN TREES; Title 'Maximum likelihood (RAxML) tef1 phylogeny of Skeletocutis nivea species complex'; ID 01628b3eb3c035; LINK Taxa = Taxa; TRANSLATE [0] 1 Skeletocutis_calida_HOLOTYPE_US_FL_KY953140_, [1] 2 Skeletocutis_coprosmae_AU_TAS_KY953115_, [2] 3 Skeletocutis_cummata_FI_KY953116_, [3] 4 Skeletocutis_cummata_HOLOTYPE_CN_JL_KY953113_, [4] 5 Skeletocutis_cummata_RU_KHA_KY953122_, [5] 6 Skeletocutis_cummata_RU_KHA_KY953123_, [6] 7 Skeletocutis_cummata_RU_KHA_KY953124_, [7] 8 Skeletocutis_futilis_HOLOTYPE_FI_KY953128_, [8] 9 Skeletocutis_impervia_HOLOTYPE_UG_KY953112_, [9] 10 Skeletocutis_ipuletii_HOLOTYPE_UG_KY953111_, [10] 11 Skeletocutis_lepida_HOLOTYPE_JP_KY953133_, [11] 12 Skeletocutis_lepida_RU_KHA_KY953126_, [12] 13 Skeletocutis_lepida_RU_KHA_KY953127_, [13] 14 Skeletocutis_nemoralis_FI_KY953119_, [14] 15 Skeletocutis_nemoralis_HOLOTYPE_FI_KY953118_, [15] 16 Skeletocutis_nemoralis_PL_KY953121_, [16] 17 Skeletocutis_nivea_sensu_typi_CN_BJ_KY953117_, [17] 18 Skeletocutis_nivea_sensu_typi_EPITYPE_ID_JT_KY953135_, [18] 19 Skeletocutis_nivea_sensu_typi_ID_JT_KY953136_, [19] 20 Skeletocutis_nivea_sensu_typi_MY_KY953132_, [20] 21 Skeletocutis_ochroalba_CA_AB_KY953137_, [21] 22 Skeletocutis_ochroalba_CA_AB_KY953138_, [22] 23 Skeletocutis_semipileata_CN_JL_KY953110_, [23] 24 Skeletocutis_semipileata_EPITYPE_US_NY_KY953129_, [24] 25 Skeletocutis_semipileata_FI_KY953131_, [25] 26 Skeletocutis_semipileata_PL_KY953120_, [26] 27 Skeletocutis_semipileata_RU_KHA_KY953125_, [27] 28 Skeletocutis_semipileata_US_MA_KY953134_, [28] 29 Skeletocutis_semipileata_US_NY_KY953130_, [29] 30 Skeletocutis_semipileata_US_TN_KY953139_, [30] 31 Skeletocutis_unguina_HOLOTYPE_CN_YN_KY953141_, [31] 32 Skeletocutis_yuchengii_CN_YN_KY953114_, [32] 33 Skeletocutis_yuchengii_HOLOTYPE_CN_YN_KY953109_, [33] 34 Tyromyces_sp_OUTGROUP_JN710734_; TREE tree1 = ((((((((((((6:0.00000100000050002909,5:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 39 ],3:0.002042658543740242):0.00000100000050002909[%bootstrapFrequency = 37 ],7:0.002000016763714372):0.0019923805215382247[%bootstrapFrequency = 67 ],4:0.00000100000050002909):0.05161393042448109[%bootstrapFrequency = 100 ],((16:0.00000100000050002909,15:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 42 ],14:0.00000100000050002909):0.035324267281651896[%bootstrapFrequency = 100 ]):0.013814908814148215[%bootstrapFrequency = 95 ],(22:0.00000100000050002909,21:0.00000100000050002909):0.09092722079068995[%bootstrapFrequency = 100 ]):0.010296870957607493[%bootstrapFrequency = 79 ],2:0.06642108514027517):0.007690955436318158[%bootstrapFrequency = 68 ],((((30:0.00000100000050002909,24:0.00000100000050002909):0.00000100000050002909[%bootstrapFrequency = 38 ],29:0.0019103784858212657):0.00000100000050002909[%bootstrapFrequency = 63 ],28:0.001936767092192646):0.013686041269641314[%bootstrapFrequency = 100 ],((23:0.00000100000050002909,27:0.00000100000050002909):0.0038631465494649[%bootstrapFrequency = 99 ],(26:0.00000100000050002909,25:0.00000100000050002909):0.005757167716545105[%bootstrapFrequency = 95 ]):0.0018377317617819383[%bootstrapFrequency = 76 ]):0.09700586139660379[%bootstrapFrequency = 100 ]):0.006329287994574832[%bootstrapFrequency = 67 ],(((((13:0.00000100000050002909,11:0.00000100000050002909):0.00199482845344138[%bootstrapFrequency = 68 ],12:0.002103059984135882):0.03430251641064714[%bootstrapFrequency = 99 ],(33:0.03793458319309312,32:0.03817482131849949):0.05266287976008845[%bootstrapFrequency = 97 ]):0.004366839663786397[%bootstrapFrequency = 20 ],(((19:0.019740947166747937,20:0.0021773698219781173):0.004321705275603432[%bootstrapFrequency = 64 ],17:0.0151938325123332):0.0018900782975219343[%bootstrapFrequency = 57 ],18:0.0043675968253946455):0.020509719381718625[%bootstrapFrequency = 94 ]):0.0038947810386242986[%bootstrapFrequency = 30 ],((31:0.06149032183949653,9:0.026236838523069635):0.00000100000050002909[%bootstrapFrequency = 32 ],10:0.049189776376445095):0.007359136974764993[%bootstrapFrequency = 28 ]):0.026428376056407757[%bootstrapFrequency = 83 ]):0.009708927019032212[%bootstrapFrequency = 12 ],1:0.15338984482151627):0.10725950452767018[%bootstrapFrequency = 44 ],8:0.1447234431009256):0.32340609350289495,34:0.32340609350289495); END; BEGIN TREES; Title 'Bayesian (MrBayes) tef1 phylogeny of Skeletocutis nivea species complex'; ID 01628b3ec0c036; LINK Taxa = Taxa; TRANSLATE [0] 3 Skeletocutis_calida_HOLOTYPE_US_FL_KY953140_, [1] 1 Skeletocutis_coprosmae_AU_TAS_KY953115_, [2] 2 Skeletocutis_cummata_FI_KY953116_, [3] 4 Skeletocutis_cummata_HOLOTYPE_CN_JL_KY953113_, [4] 5 Skeletocutis_cummata_RU_KHA_KY953122_, [5] 8 Skeletocutis_cummata_RU_KHA_KY953123_, [6] 6 Skeletocutis_cummata_RU_KHA_KY953124_, [7] 7 Skeletocutis_futilis_HOLOTYPE_FI_KY953128_, [8] 10 Skeletocutis_impervia_HOLOTYPE_UG_KY953112_, [9] 9 Skeletocutis_ipuletii_HOLOTYPE_UG_KY953111_, [10] 11 Skeletocutis_lepida_HOLOTYPE_JP_KY953133_, [11] 17 Skeletocutis_lepida_RU_KHA_KY953126_, [12] 16 Skeletocutis_lepida_RU_KHA_KY953127_, [13] 18 Skeletocutis_nemoralis_FI_KY953119_, [14] 19 Skeletocutis_nemoralis_HOLOTYPE_FI_KY953118_, [15] 12 Skeletocutis_nemoralis_PL_KY953121_, [16] 13 Skeletocutis_nivea_sensu_typi_CN_BJ_KY953117_, [17] 14 Skeletocutis_nivea_sensu_typi_EPITYPE_ID_JT_KY953135_, [18] 15 Skeletocutis_nivea_sensu_typi_ID_JT_KY953136_, [19] 20 Skeletocutis_nivea_sensu_typi_MY_KY953132_, [20] 21 Skeletocutis_ochroalba_CA_AB_KY953137_, [21] 22 Skeletocutis_ochroalba_CA_AB_KY953138_, [22] 25 Skeletocutis_semipileata_CN_JL_KY953110_, [23] 26 Skeletocutis_semipileata_EPITYPE_US_NY_KY953129_, [24] 28 Skeletocutis_semipileata_FI_KY953131_, [25] 27 Skeletocutis_semipileata_PL_KY953120_, [26] 29 Skeletocutis_semipileata_RU_KHA_KY953125_, [27] 30 Skeletocutis_semipileata_US_MA_KY953134_, [28] 24 Skeletocutis_semipileata_US_NY_KY953130_, [29] 23 Skeletocutis_semipileata_US_TN_KY953139_, [30] 31 Skeletocutis_unguina_HOLOTYPE_CN_YN_KY953141_, [31] 32 Skeletocutis_yuchengii_CN_YN_KY953114_, [32] 33 Skeletocutis_yuchengii_HOLOTYPE_CN_YN_KY953109_, [33] 34 Tyromyces_sp_OUTGROUP_JN710734_; TREE tree2 = (((((((((((5:0.000753609,2:0.00191687):0.0007951806[%posteriorProbability = 0.19195387 ],(8:0.0008190913,6:0.001895828):0.0008386554[%posteriorProbability = 0.19215386 ]):0.001899947[%posteriorProbability = 0.85774282 ],4:0.0009574578):0.0294857[%posteriorProbability = 1 ],((19:0.0008203296,18:0.0008673594):0.0008675241[%posteriorProbability = 0.33671089 ],12:0.0009146179):0.02018655[%posteriorProbability = 1 ]):0.007302726[%posteriorProbability = 0.9794347 ],(21:0.001214976,22:0.001300074):0.04751413[%posteriorProbability = 1 ]):0.009506082[%posteriorProbability = 0.9920672 ],1:0.03539068):0.007069553[%posteriorProbability = 0.96016932 ],(((25:0.0007966355,29:0.0008158514):0.00310551[%posteriorProbability = 0.99810013 ],(27:0.0008130572,28:0.0007833943):0.004184022[%posteriorProbability = 0.99986668 ]):0.002079292[%posteriorProbability = 0.63525765 ],(((26:0.0008167226,23:0.0008381562):0.0008096506[%posteriorProbability = 0.20485301 ],24:0.00193229):0.0009122137[%posteriorProbability = 0.224985 ],30:0.001970459):0.009283588[%posteriorProbability = 0.99996667 ]):0.05208035[%posteriorProbability = 1 ]):0.0068771[%posteriorProbability = 0.9495367 ],((((((16:0.001599831,11:0.0008847139):0.001383328[%posteriorProbability = 0.48806746 ],17:0.002001531):0.02002088[%posteriorProbability = 1 ],(10:0.01673544,31:0.03517863):0.005908688[%posteriorProbability = 0.54176388 ]):0.004447284[%posteriorProbability = 0.49846677 ],(33:0.02299276,32:0.02146328):0.02881497):0.004129577[%posteriorProbability = 1 ],(((20:0.002229547,15:0.01232246):0.002982333[%posteriorProbability = 0.7664489 ],13:0.009976017):0.001931844[%posteriorProbability = 0.42803813 ],14:0.003660752):0.01128552[%posteriorProbability = 0.99973335 ]):0.005189907[%posteriorProbability = 0.50059996 ],9:0.02655632):0.01131018[%posteriorProbability = 0.86927538 ]):0.009557508[%posteriorProbability = 0.99493367 ],3:0.07720912):0.05051491[%posteriorProbability = 0.76704886 ],7:0.07913043):0.1278912[%posteriorProbability = 0.99920005 ],34:0.1278912)[% ] [% ] [% setBetweenDouble = posteriorProbability ]; END; BEGIN SETS; CHARSET ex1 = 1 - 141; CHARSET intr1 = 142 - 209; CHARSET ex2 = 210 - 346 405; CHARSET intr2 = 347 - 404; CHARSET ex3 = 406 - 722 785; CHARSET intr3 = 723 - 784; CHARSET ex4 = 786 - 881; CHARSET pos1 = 1 4 7 10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85 88 91 94 97 100 103 106 109 112 115 118 121 124 127 130 133 136 139 210 213 216 219 222 225 228 231 234 237 240 243 246 249 252 255 258 261 264 267 270 273 276 279 282 285 288 291 294 297 300 303 306 309 312 315 318 321 324 327 330 333 336 339 342 345 406 409 412 415 418 421 424 427 430 433 436 439 442 445 448 451 454 457 460 463 466 469 472 475 478 481 484 487 490 493 496 499 502 505 508 511 514 517 520 523 526 529 532 535 538 541 544 547 550 553 556 559 562 565 568 571 574 577 580 583 586 589 592 595 598 601 604 607 610 613 616 619 622 625 628 631 634 637 640 643 646 649 652 655 658 661 664 667 670 673 676 679 682 685 688 691 694 697 700 703 706 709 712 715 718 721 786 789 792 795 798 801 804 807 810 813 816 819 822 825 828 831 834 837 840 843 846 849 852 855 858 861 864 867 870 873 876 879; CHARSET pos2 = 2 5 8 11 14 17 20 23 26 29 32 35 38 41 44 47 50 53 56 59 62 65 68 71 74 77 80 83 86 89 92 95 98 101 104 107 110 113 116 119 122 125 128 131 134 137 140 211 214 217 220 223 226 229 232 235 238 241 244 247 250 253 256 259 262 265 268 271 274 277 280 283 286 289 292 295 298 301 304 307 310 313 316 319 322 325 328 331 334 337 340 343 346 407 410 413 416 419 422 425 428 431 434 437 440 443 446 449 452 455 458 461 464 467 470 473 476 479 482 485 488 491 494 497 500 503 506 509 512 515 518 521 524 527 530 533 536 539 542 545 548 551 554 557 560 563 566 569 572 575 578 581 584 587 590 593 596 599 602 605 608 611 614 617 620 623 626 629 632 635 638 641 644 647 650 653 656 659 662 665 668 671 674 677 680 683 686 689 692 695 698 701 704 707 710 713 716 719 722 787 790 793 796 799 802 805 808 811 814 817 820 823 826 829 832 835 838 841 844 847 850 853 856 859 862 865 868 871 874 877 880; CHARSET pos3 = 3 6 9 12 15 18 21 24 27 30 33 36 39 42 45 48 51 54 57 60 63 66 69 72 75 78 81 84 87 90 93 96 99 102 105 108 111 114 117 120 123 126 129 132 135 138 141 212 215 218 221 224 227 230 233 236 239 242 245 248 251 254 257 260 263 266 269 272 275 278 281 284 287 290 293 296 299 302 305 308 311 314 317 320 323 326 329 332 335 338 341 344 405 408 411 414 417 420 423 426 429 432 435 438 441 444 447 450 453 456 459 462 465 468 471 474 477 480 483 486 489 492 495 498 501 504 507 510 513 516 519 522 525 528 531 534 537 540 543 546 549 552 555 558 561 564 567 570 573 576 579 582 585 588 591 594 597 600 603 606 609 612 615 618 621 624 627 630 633 636 639 642 645 648 651 654 657 660 663 666 669 672 675 678 681 684 687 690 693 696 699 702 705 708 711 714 717 720 785 788 791 794 797 800 803 806 809 812 815 818 821 824 827 830 833 836 839 842 845 848 851 854 857 860 863 866 869 872 875 878 881; TAXPARTITION * UNTITLED = Skeletocutis_calida : 1, Skeletocutis_coprosmae : 2, Skeletocutis_cummata : 3 - 7, Skeletocutis_futilis : 8, Skeletocutis_impervia : 9, Skeletocutis_ipuletii : 10, Skeletocutis_lepida : 11 - 13, Skeletocutis_nemoralis : 14 - 16, Skeletocutis_nivea_sensu_typi : 17 - 20, Skeletocutis_ochroalba : 21 - 22, Skeletocutis_semipileata : 23 - 30, Skeletocutis_unguina : 31, Skeletocutis_yuchengii : 32 - 33, Tyromyces_sp_OUTGROUP : 34; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 881; END; BEGIN NOTES; SUTM T = 1 N = genBankNumber S = KY953140; SUTM T = 2 N = genBankNumber S = KY953115; SUTM T = 3 N = genBankNumber S = KY953116; SUTM T = 4 N = genBankNumber S = KY953113; SUTM T = 5 N = genBankNumber S = KY953122; SUTM T = 6 N = genBankNumber S = KY953123; SUTM T = 7 N = genBankNumber S = KY953124; SUTM T = 8 N = genBankNumber S = KY953128; SUTM T = 9 N = genBankNumber S = KY953112; SUTM T = 10 N = genBankNumber S = KY953111; SUTM T = 11 N = genBankNumber S = KY953133; SUTM T = 12 N = genBankNumber S = KY953126; SUTM T = 13 N = genBankNumber S = KY953127; SUTM T = 14 N = genBankNumber S = KY953119; SUTM T = 15 N = genBankNumber S = KY953118; SUTM T = 16 N = genBankNumber S = KY953121; SUTM T = 17 N = genBankNumber S = KY953117; SUTM T = 18 N = genBankNumber S = KY953135; SUTM T = 19 N = genBankNumber S = KY953136; SUTM T = 20 N = genBankNumber S = KY953132; SUTM T = 21 N = genBankNumber S = KY953137; SUTM T = 22 N = genBankNumber S = KY953138; SUTM T = 23 N = genBankNumber S = KY953110; SUTM T = 24 N = genBankNumber S = KY953129; SUTM T = 25 N = genBankNumber S = KY953131; SUTM T = 26 N = genBankNumber S = KY953120; SUTM T = 27 N = genBankNumber S = KY953125; SUTM T = 28 N = genBankNumber S = KY953134; SUTM T = 29 N = genBankNumber S = KY953130; SUTM T = 30 N = genBankNumber S = KY953139; SUTM T = 31 N = genBankNumber S = KY953141; SUTM T = 32 N = genBankNumber S = KY953114; SUTM T = 33 N = genBankNumber S = KY953109; SUTM T = 34 N = genBankNumber S = JN710734; END; BEGIN LABELS; TAXAGROUPLABEL Skeletocutis_calida COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_coprosmae COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_cummata COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_futilis COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_impervia COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_ipuletii COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_lepida COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_nemoralis COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_nivea_sensu_typi COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_ochroalba COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_semipileata COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_unguina COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Skeletocutis_yuchengii COLOR = (RGB 1 1 1) ; TAXAGROUPLABEL Tyromyces_sp_OUTGROUP COLOR = (RGB 1 1 1) ; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 881; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 881; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1522766154486; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 582297227015874521; tell It; setDefaultOrder 31 10 2 4 1 0 3 32 29 30 20 21 19 7 6 5 26 27 24 25 9 8 15 12 18 17 16 14 13 11 28 23 22 33; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4090568364892605476; mqVersion 340; checksumv 0 3 899992485 null getNumChars 881 numChars 881 getNumTaxa 34 numTaxa 34 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 573801.0 sumSquares -1.5218563860810377E20 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 940; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #582297227015874521 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #582297227015874521; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.molec.GenBankNumber.GenBankNumber; tell It; getMatrixSource #mesquite.charMatrices.CharMatrixCoordIndep.CharMatrixCoordIndep; tell It; setCharacterSource #mesquite.charMatrices.StoredMatrices.StoredMatrices; tell It; setDataSet #4090568364892605476; endTell; endTell; endTell; getTable; tell It; columnWidth 0 209; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 868; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.sort; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #582297227015874521 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 01628b3eb3c035; toggleUseWeights off; endTell; setAssignedID 2526.1522754774046.1882818463509041089; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 868; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.ladderize; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(34:0.32340609350289495,(8:0.1447234431009256,(1:0.15338984482151627,(((10:0.049189776376445095,(9:0.026236838523069635,31:0.06149032183949653):0.00000100000050002909):0.007359136974764993,((18:0.0043675968253946455,(17:0.0151938325123332,(19:0.019740947166747937,20:0.0021773698219781173):0.004321705275603432):0.0018900782975219343):0.020509719381718625,((32:0.03817482131849949,33:0.03793458319309312):0.05266287976008845,(12:0.002103059984135882,(11:0.00000100000050002909,13:0.00000100000050002909):0.00199482845344138):0.03430251641064714):0.004366839663786397):0.0038947810386242986):0.026428376056407757,((((23:0.00000100000050002909,27:0.00000100000050002909):0.0038631465494649,(25:0.00000100000050002909,26:0.00000100000050002909):0.005757167716545105):0.0018377317617819383,(28:0.001936767092192646,(29:0.0019103784858212657,(24:0.00000100000050002909,30:0.00000100000050002909):0.00000100000050002909):0.00000100000050002909):0.013686041269641314):0.09700586139660379,(2:0.06642108514027517,((21:0.00000100000050002909,22:0.00000100000050002909):0.09092722079068995,((14:0.00000100000050002909,(15:0.00000100000050002909,16:0.00000100000050002909):0.00000100000050002909):0.035324267281651896,(4:0.00000100000050002909,(7:0.002000016763714372,(3:0.002042658543740242,(5:0.00000100000050002909,6:0.00000100000050002909):0.00000100000050002909):0.00000100000050002909):0.0019923805215382247):0.05161393042448109):0.013814908814148215):0.010296870957607493):0.007690955436318158):0.006329287994574832):0.009708927019032212):0.10725950452767018):0.32340609350289495);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #582297227015874521 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; setTreeBlockID 01628b3ec0c036; toggleUseWeights off; endTell; setAssignedID 2557.1522754777452.1554065830571836167; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 868; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.ladderize; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(34:0.1278912,(8:0.07913043,(1:0.07720912,((10:0.02655632,((18:0.003660752,(17:0.009976017,(19:0.01232246,20:0.002229547):0.002982333):0.001931844):0.01128552,((32:0.02146328,33:0.02299276):0.02881497,((9:0.01673544,31:0.03517863):0.005908688,(12:0.002001531,(11:0.0008847139,13:0.001599831):0.001383328):0.02002088):0.004447284):0.004129577):0.005189907):0.01131018,((((23:0.0007966355,27:0.0008158514):0.00310551,(25:0.0007833943,26:0.0008130572):0.004184022):0.002079292,(28:0.001970459,(29:0.00193229,(24:0.0008167226,30:0.0008381562):0.0008096506):0.0009122137):0.009283588):0.05208035,(2:0.03539068,((21:0.001214976,22:0.001300074):0.04751413,((16:0.0009146179,(14:0.0008673594,15:0.0008203296):0.0008675241):0.02018655,(4:0.0009574578,((3:0.00191687,5:0.000753609):0.0007951806,(6:0.0008190913,7:0.001895828):0.0008386554):0.001899947):0.0294857):0.007302726):0.009506082):0.007069553):0.0068771):0.009557508):0.05051491):0.1278912)<> <> < setBetweenDouble = posteriorProbability >;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4090568364892605476 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 868; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;