#NEXUS [written Tue Jun 18 13:31:04 EDT 2019 by Mesquite version 3.6 (build 917) at JE1_win7/10.38.193.38] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=24; TAXLABELS Grapevine_leafroll_associated_virus_3_MH796135.1_ID_USA Grapevine_leafroll_associated_virus_3_KX756668_BRAZIL Grapevine_leafroll_associated_virus_3_MF991951_CROATIA Grapevine_leafroll_associated_virus_3_MH796136_ID_USA Grapevine_leafroll_associated_virus_3_AF037268.2_NY_USA Grapevine_leafroll_associated_virus_3_KY707826_CA_USA Grapevine_leafroll_associated_virus_3_JQ655295_SOUTH_AFRICA Grapevine_leafroll_associated_virus_3_KP401798.1_PORTUGAL Grapevine_leafroll_associated_virus_3_CAES_New53 Grapevine_leafroll_associated_virus_3_CAES_J13 Grapevine_leafroll_associated_virus_3_CAES_Ho43 Grapevine_leafroll_associated_virus_3_CAES_New43 Grapevine_leafroll_associated_virus_3_CAES_New63 Grapevine_leafroll_associated_virus_3_CAES_Pr13 Grapevine_leafroll_associated_virus_3_CAES_J93 Grapevine_leafroll_associated_virus_3_CAES_Wild63 Grapevine_leafroll_associated_virus_3_CAES_Wild83 Grapevine_leafroll_associated_virus_3_CAES_Pr23 Grapevine_leafroll_associated_virus_3_CAES_J33 Grapevine_leafroll_associated_virus_3_CAES_Ho13 Grapevine_leafroll_associated_virus_3_CAES_J23 Grapevine_leafroll_associated_virus_3_CAES_Wild53 Grapevine_leafroll_associated_virus_3_CAES_Wild43 Grapevine_leafroll_associated_virus_3_GU983863_WA_USA ; END; BEGIN CHARACTERS; TITLE GLRaV3; DIMENSIONS NCHAR=381; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Grapevine_leafroll_associated_virus_3_MH796135.1_ID_USA ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCTGCGTTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_KX756668_BRAZIL ATAAGCTGGTTTTTGAGAAAGATCCAGACAAGTTCTTAAAGACTATGGGTAAGGGGATAGCTTTGGACTTAACGGGGGTTACCCATAAACCGAAAGTTATTAACGAGCCGGGAAAAGTATCAGTAGAGGTAGCAATGAAGATTAATACCGCATTGGTAGAGCTGTGTAAGAAGGTTATGGGCTCCGATGACACAACAACCAAGACAAAATTCTTCTTGTACGTGATGCAGATCGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTCGACTACATAGAAACGGACGATGGAAAGAAGATATATGCGGTGTGGGTATACGATTGCATTAAACAAGCTGCCGCTTCAACGGGTTACGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_MF991951_CROATIA ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACCATGGGCAAGGGAATAGCTTTGGATTTAACGGGAGTTACCCATAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCGGTAGAGGTGGCAATGAAGATTAACGCCGCATTGATGGAGTTGTGTAAGAAGGTTATGGGCGCTGATGACGCAGCAACTAAGACGAAGTTCTTCTTGTACGTGATGCAGATCGCTTGCACGTTCTTCACATCGTCTTCGACAGAGTTCAAAGAGTTCGACTATATAGAGACTGATGATGGAAAGAAGATATACGCGGTATGGGTGTATGATTGCATTAAACAAGCTGCGGCTTCGACGGGCTACGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_MH796136_ID_USA ATAAGTTGGTTTTTGAGAAAGATCCGGATAAGTTTTTGAAGACTATGGGCAAGGGAATAGCCTTGGATTTGACAGGAATTGTTCATAAGCCAAAGGTTATTAACGAGCCAGGGAAGGTGTCCGTCGAAGTGGCAATGAAAATTAACGCCGCACTAATGGAGCTGTGCAAGAAGGTTATGGGCGCCGACGATGCGGCAACCAAAACAAAGTTCTTCTTGTACGTTATGCAAATAGCTTGTACGTTCTTTACATCGTCTTCGACCGAATTTAAAGAGTTCGATTATATAGAAACCGACGATGGAAAGAAGATATACGCAGTGTGGGTGTACGATTGTATCAAACAAGCCGCCGCCTCAACGGGTTATGAAAACCCAGTGAGAC Grapevine_leafroll_associated_virus_3_AF037268.2_NY_USA ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGGCGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAGAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_KY707826_CA_USA ATAAATTGGTTTTCGAAAAGGATCCAGATAAGTTTTTGAAGACAATGGGGAAGGGTATAGCCTTAGACCTTACCGGCGTTACTCACAAGCCGAAGGTTATTAATGAACCAGGAAAAGTGTCCGTAGAGGTAGCCATGAAAATTAATACCGCGCTCACAGATCTGTGCAAGAAGGTAATGGGAGCGGATGACGCTGCAACGAAGACTAAATTCTTTTTGTACGTCATGCAGATAGCCTGCACGTTCTTTACGTCGTCGTCAGCTGAATTCAAAGAGTTCGACTATGTGGAAACCGACGATGGAAAGAAAATATTCGCAGTGTGGGTGTACGATTGTATTAAGCAAGCTGCGGCGTCTACGGGTTATGAGAACCCAGTAAGGC Grapevine_leafroll_associated_virus_3_JQ655295_SOUTH_AFRICA ATAAGCTCGTTTTTGAAAAGGATCCTGACAAGTTTTTGAAGACAATGGGTAAGGGCATAGCGTTGGATCTAACCGGGATCACTCATAAACCAAAAGTTATTAATGAACCAGGAAAAGTGTCCGTGGAGGTGGCCATGAAAATAAACGCCGCTCTTATGGAACTGTGTAAGAAGGTTATGGGTAGTGACGACGCAACGACTAAGACTAAATTCTTCTTGTACGTAATGCAGATAGCGTGTACGTTCTTCACATCGTCTTCTACTGAATTTAAAGAATTTGATTACATAGAGACGGATGATGGGAAGAAGATATACGCAGTGTGGGTTTACGATTGCATAAAGCAAGCAGCGGCATCAACGGGTTATGAAAACCCAGTGAGGC Grapevine_leafroll_associated_virus_3_KP401798.1_PORTUGAL ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_New53 ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_J13 ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_Ho43 ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_New43 ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_New63 ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_Pr13 ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_J93 ATAAGCTGGTTTTTGAGAAAGATCCAGACAAGTTCTTAAAGACTATGGGTAAGGGGATAGCTTTGGACTTAACGGGGGTTACCCATAAACCGAAAGTTATTAACGAGCCGGGAAAAGTATCAGTAGAGGTAGCAATGAAGATTAATACCGCATTGGTAGAGCTGTGTAAGAAGGTTATGGGCTCCGATGACACAACAACCAAGACAAAATTCTTCTTGTACGTGATGCAGATCGCTTGCACGTTCTTTACATCGTCTTCGACAGAGTTCAAAGAGTTCGACTACATAGAAACGGACGATGGAAAGAAGATATATGCGGTGTGGGTATACGATTGCATTAAACAAGCTGCCGCTTCAACGGGTTACGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_Wild63 ATAAGCTGGTTTTTGAGAAAGATCCAGACAAGTTCTTAAAGACTATGGGTAAGGGGATAGCTTTGGACTTAACGGGGGTTACCCATAAACCGAAAGTTATTAACGAGCCGGGAAAAGTATCAGTAGAGGTAGCAATGAAGATTAATACCGCATTGGTAGAGCTGTGTAAGAAGGTTATGGGCTCCGATGACACAACAACCAAGACAAAATTCTTCTTGTACGTGATGCAGATCGCTTGCACGTTCTTTACATCGTCTTCGACAGAGTTCAAAGAGTTCGACTACATAGAAACGGACGATGGAAAGAAGATATATGCGGTGTGGGTATACGATTGCATTAAACAAGCTGCCGCTTCAACGGGTTACGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_Wild83 ATAAGCTGGTTTTTGAGAAAGATCCAGACAAGTTCTTAAAGACTATGGGTAAGGGGATAGCTTTGGACTTAACGGGGGTTACCCATAAACCGAAAGTCATTAACGAGCCGGGAAAAGTATCAGTAGAGGTAGCAATGAAGATTAATACCGCATTGGTAGAGCTGTGTAAGAAGGTTATGGGCTCCGATGACACAACAACCAAGACAAAATTCTTCTTGTACGTGATGCAGATCGCTTGCACGTTCTTTACATCGTCTTCGACAGAGTTCAAAGAGTTCGACTACATAGAAACGGACGATGGAAAGAAGATATATGCGGTGTGGGTATACGATTGCATTAAACAAGCTGCCGCTTCAACGGGTTACGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_Pr23 ATAAGCTGGTTTTTGAGAAAGATCCAGACAAGTTCTTAAAGACTATGGGTAAGGGGATAGCTTTGGACTTAACGGGGGTTACCCATAAACCGAAAGTTATTAACGAGCCGGGAAAAGTATCAGTAGAGGTAGCAATGAAGATTAATACCGCATTGGTAGAGCTGTGTAAGAAGGTTATGGGCTCCGATGACACAACAACCAAGACAAAATTCTTCTTGTACGTGATGCAGATCGCTTGCACGTTCTTTACATCGTCTTCGACAGAGTTCAAAGAGTTTGACTACATAGAAACGGACGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCCGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_J33 ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_Ho13 ATAAGCTGGTTTTTGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCATAAACCGAAAGTTATTAACGAGCCGGGAAAAGTATCAGTAGAGGTGGCAATGAAGATTAATACCGCATTGGTAGAGCTGTGTAAGAAGGTTATGGGCTCCGATGACACAACAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATCGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTCGACTACATAGAAACGGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCAACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_J23 ATAAGTTGGTTTTTGAGAAAGATCCAGACAAGTTTTTAAAGACTATGGGCAAGGGAATAGCTTTGGACTTAACGGGGGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGAAAAGTATCAGTAGAGGTAGCAATGAAGATTAATGCCGCATTGGTAGAGCTGTGTAAGAAGGTTATGGGCTCCGATGACACAACAACCAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_Wild53 ATAAGCTGGTTTTTGAGAAAGATCCAGACAAGTTCTTAAAGACTATGGGTAAGGGGATAGCTTTGGACTTAACGGGGGTTACCCATAAACCGAAAGTTATTAACGAGCCGGGAAAAGTATCAGTAGAGGTAGCAATGAAGATTAATACCGCATTGGTAGAGCTGTGTAAGAAGGTTATGGGCTCCGATGACACAACAACCAAGACAAAATTCTTCTTGTACGTGATGCAGATCGCTTGCACGTTCTTTACATCGTCTTCGACAGAGTTCAAAGAGTTCGACTACATAGAAACGGACGATGGAAAGAAGATATATGCGGTGTGGGTATACGATTGCATTAAACAAGCTGCCGCTTCAACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_CAES_Wild43 ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC Grapevine_leafroll_associated_virus_3_GU983863_WA_USA ATAAGTTGGTTTTCGAGAAAGATCCAGACAAGTTCTTGAAGACTATGGGCAAGGGAATAGCTTTGGACTTGACGGGAGTTACCCACAAACCGAAAGTTATTAACGAGCCAGGGAAAGTATCAGTAGAGGTGGCAATGAAGATTAATGCCGCATTGATGGAGCTGTGTAAGAAGGTTATGGGCGCCGATGACGCAGCAACTAAGACAAAATTCTTCTTGTACGTGATGCAGATTGCTTGCACGTTCTTTACATCGTCTTCGACGGAGTTCAAAGAGTTTGACTACATAGAAACCGATGATGGAAAGAAGATATATGCGGTGTGGGTATATGATTGCATTAAACAAGCTGCTGCTTCGACGGGTTATGAAAACCCGGTAAGGC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 381; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 381; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 381; END; BEGIN TREES; Title GLRaV3; ID 016b6ba2f62f18; LINK Taxa = Taxa; TRANSLATE [0] 1 Grapevine_leafroll_associated_virus_3_MH796135.1_ID_USA, [1] 2 Grapevine_leafroll_associated_virus_3_KX756668_BRAZIL, [2] 3 Grapevine_leafroll_associated_virus_3_MF991951_CROATIA, [3] 4 Grapevine_leafroll_associated_virus_3_MH796136_ID_USA, [4] 5 Grapevine_leafroll_associated_virus_3_AF037268.2_NY_USA, [5] 6 Grapevine_leafroll_associated_virus_3_KY707826_CA_USA, [6] 7 Grapevine_leafroll_associated_virus_3_JQ655295_SOUTH_AFRICA, [7] 8 Grapevine_leafroll_associated_virus_3_KP401798.1_PORTUGAL, [8] 9 Grapevine_leafroll_associated_virus_3_CAES_New53, [9] 10 Grapevine_leafroll_associated_virus_3_CAES_J13, [10] 11 Grapevine_leafroll_associated_virus_3_CAES_Ho43, [11] 12 Grapevine_leafroll_associated_virus_3_CAES_New43, [12] 13 Grapevine_leafroll_associated_virus_3_CAES_New63, [13] 14 Grapevine_leafroll_associated_virus_3_CAES_Pr13, [14] 15 Grapevine_leafroll_associated_virus_3_CAES_J93, [15] 16 Grapevine_leafroll_associated_virus_3_CAES_Wild63, [16] 17 Grapevine_leafroll_associated_virus_3_CAES_Wild83, [17] 18 Grapevine_leafroll_associated_virus_3_CAES_Pr23, [18] 19 Grapevine_leafroll_associated_virus_3_CAES_J33, [19] 20 Grapevine_leafroll_associated_virus_3_CAES_Ho13, [20] 21 Grapevine_leafroll_associated_virus_3_CAES_J23, [21] 22 Grapevine_leafroll_associated_virus_3_CAES_Wild53, [22] 23 Grapevine_leafroll_associated_virus_3_CAES_Wild43, [23] 24 Grapevine_leafroll_associated_virus_3_GU983863_WA_USA; TREE Imported_tree_1 = ((((((((((((((23,24)[%bootstrapFrequency = 0.062 ],19)[%bootstrapFrequency = 0.005 ],14)[%bootstrapFrequency = 0.003 ],13)[%bootstrapFrequency = 0.0 ],12)[%bootstrapFrequency = 0.001 ],11)[%bootstrapFrequency = 0.004 ],10)[%bootstrapFrequency = 0.005 ],9)[%bootstrapFrequency = 0.022 ],(5,8)[%bootstrapFrequency = 0.051 ])[%bootstrapFrequency = 0.64 ],1)[%bootstrapFrequency = 0.993 ],(21,(20,(18,(22,(2,(17,(15,16)[%bootstrapFrequency = 0.305 ])[%bootstrapFrequency = 0.499 ])[%bootstrapFrequency = 0.526 ])[%bootstrapFrequency = 0.842 ])[%bootstrapFrequency = 0.991 ])[%bootstrapFrequency = 0.675 ])[%bootstrapFrequency = 0.868 ])[%bootstrapFrequency = 0.963 ],3)[%bootstrapFrequency = 0.996 ],4)[%bootstrapFrequency = 0.621 ],6,7)[% ] [% ] [% setBetweenDouble = bootstrapFrequency ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1560879064909; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4738787876987041045; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7814060360405122906; mqVersion 360; checksumv 0 3 85138542 null getNumChars 381 numChars 381 getNumTaxa 24 numTaxa 24 short true bits 15 states 15 sumSquaresStatesOnly 194121.0 sumSquares 194121.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 161; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 906; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4738787876987041045 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 016b6ba2f62f18; toggleUseWeights off; endTell; setAssignedID 4957.1560878978029.5603762364293406198; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1119 834; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7814060360405122906 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 264; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1119 834; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;