#NEXUS [written Tue Oct 29 12:15:51 CET 2019 by Mesquite version 3.40 (build 877) at mdk-crou-006.cbs-niob.local/10.136.73.120] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=23; TAXLABELS Phacidiella_eucalypti_EF110617.1 Hormodochis_melanochlora_KP004459.1 Hormodochis_aggregata_CPC_30737 Hormodochis_aggregata_CPC_30530 Hormodochis_aggregata_CPC_30685 Hormodochis_aggregata_CPC_30453 Hormodochis_aggregata_CPC_24159 Hormodochis_aggregata_CPC_24027 Hormodochis_aggregata_CPC_30580 Hormodochis_aggregata_CPC_30528 Hormodochis_aggregata_CPC_30990 Hormodochis_aggregata_CPC_30630 Hormodochis_aggregata_CPC_35475 Hormodochis_aggregata_CPC_26669 Hormodochis_aggregata_CPC_33913 Hormodochis_aggregata_CPC_33325 Hormodochis_aggregata_CPC_30683 Hormodochis_aggregata_CPC_35471 Hormodochis_aggregata_CPC_24593 Hormodochis_aggregata_CPC_30413 Hormodochis_aggregata_CPC_30017 Hormodochis_aggregata_CPC_33331 Hormodochis_aggregata_CPC_37499 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1084; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Phacidiella_eucalypti_EF110617.1 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------agtatt----------------------------------------attatcgtggt----------------agccattgttccgtaggtgaacctgcggaaggatcattaatagaga-cgtagccccggggaggaaacttcctatggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgttggctccggctgacgagcacccgccgaaggtccaaacaaaaattcttgaagtaaacattgaagtctgataataaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggatcctgccccccc-gggggcaatcccgaaatgcagcggcggagcggccgagtttcctagcgcagtgacttattatctcgctacaaggaattcgtgtcgtcccggccggacaacaaccaa--ttttttacgattgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgccttagtaacggcgagtgaagcggcaacagctcaaatttg Hormodochis_melanochlora_KP004459.1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cggcccacagactaaatgttgatgggttcgcagca-ccctgcggattttcgatatagtcggtcgttgggg--cacgca-ccccttcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccggggaggaaactcccc-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcctcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacacaaattcttgaagtaaacactgaagtctgat-tagaactatgaaaatagcctaaaactttcaacaacggatcttttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgcccccccggggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactttcatcatcgctacaaggaatccgcgcctccccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaa----------------------------------------------------------- Hormodochis_aggregata_CPC_30737 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgccc-ccctgcggattttcgatatagtcggtcgtcggggcacataca-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaactccct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacacaaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggatacccgctgaac------------------------------------------------------------------------------------ Hormodochis_aggregata_CPC_30530 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgtagtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagttggggacaacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgccc-ccctgcggattttcgatatagtcggtcgtcggggcacataca-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaactccct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacacaaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaat--------------------------------------------------------------------------------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_30685 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cagctggggacaacccgcagccggacctcttgcgtccggcccacagactaaatgttgatgggtccgcgccc-ccatgcggattttcgatatagtcggtcgtcgggg--catacacccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaactccct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggatacccgctg--------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_30453 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gcacccccggggcacgtcctcgggggactgtagtcaccccaattacgtgaggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctcttgcgtccggcccacagactaaatgttgatgggtccgcgccc-ccatgcggattttcgatatagtcggtcgtcgggg--catacacccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaactccct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggatacccgctg--------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_24159 ccctgcgcaaggggatggagcaatgttgtacacaccgcccgtcgctactaccgattgaatggctcagtgaggccttcggactggctcagagaggtcggcaacgaccactcagagccggaaagttggtcaaacttggtcatttagaggaagtaaaagtcgtaacaaggtttccttcccggctcacccgccgaaaccttgaacatggcacccccggggcacgtcctcgggggactgtagtcaccccaattacgtgaggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctcttgcgtccggcccacagactaaatgttgatgggtccgcgccc-ccatgcggattttcgatatagtcggtcgtcgggg--catacacccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaactccct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcggaggaaaagaaaccaaca----------------------------------------------- Hormodochis_aggregata_CPC_24027 --------------------------------------------------------------------------------------------------------------------------------------------------------------gtaacaaggtttccttcccggctcacccgccgaaaccttgaacatggcacccccggggcacgtcctcgggggactgtagtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctcttgcgtccggcccacagactaaatgttgatgggtccgcgccc-ccatgcggattttcgatatagtcggtcgtcgggg--catacacccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaactccct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggatacccgctgaacttaagcatatca------------------------------------------------------------------------ Hormodochis_aggregata_CPC_30580 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gggggactgtagtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctcttgcgtccggcccacagactaaatgttgatgggtccgcgccc-ccatgcggattttcgatatagtcggtcgtcgggg--catacacccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaactccct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtc-------------------------------------------------------------------------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_30528 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cccggctcacccg-cgaaaccttgaacatggcacccccggggcacgtcctcgggggactgtagtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctcttgcgtccggcccacagactaaatgttgatgggtccgcgccc-ccatgcggattttcgatatagtcggtcgtcgggg--catacacccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaactccct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggataccc------------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_30990 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tccggcccacagactaaatgttgatgggtccgcgcc--ccctgcggactttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttctt-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggatacccgct---------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_30630 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------acagactaaatgttgatgggtccgcgcc--ccctgcggactttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttctt-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaatttta---------------------------------------------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_35475 ------------------------------------------------------------------------------------------------------------------------------------------------------------------caaggtttccttcccggcacacccgccgaaaccttgaacatggcacccccggggcccgtcctcgggggactgtagtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgcc--ccctgcggactttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttctt-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgcccccc--gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggatacccgctgaacttaagcatatc------------------------------------------------------------------------- Hormodochis_aggregata_CPC_26669 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------acccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgcc--ccctgcggactttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttctt-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgcccccc--gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctaca--------------------------------------------------------------------------------------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_33913 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------accttgacatggcacccccggggcccgtcctcgggggactgtagtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgcc--ccctgcggactttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttctt-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgcccccc--gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcag------------------------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_33325 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------agtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgcc--ccctgcggactttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttctt-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacattgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgcccccc--gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaacctaattttaccacgattgacctcggatcagg------------------------------------------------------------------------------------------------------ Hormodochis_aggregata_CPC_30683 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ctggggacaacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgccctccctgcggattttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttcct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacactgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcgga----------------------------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_35471 t---------------------------------------------------------------------------------------------------------------------------------------------------------------aacaaggtttccttcccggctcacccgccgaaaccttgaacatggcacccccggggcccgtcctcgggggactgtagtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgccctccctgcggattttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttcct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacactgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcacgtagggatacccgctgaacttaagcatat-------------------------------------------------------------------------- Hormodochis_aggregata_CPC_24593 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgccctccctgcggattttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttcct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacactgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgact------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Hormodochis_aggregata_CPC_30413 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cccccggggcccgtcctcgggggactgtagtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgccctccctgcggattttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttcct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacactgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggatacccgctgaa------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_30017 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------caccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgccctccctgcggattttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttcct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacgctgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgattgacctcggatcaggtagggatacccgctg--------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_33331 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gtcctcgggggactgtagtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgccctccctgcggattttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttcct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacactgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccc-gggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcc---------------------------------------------------------------------------------------------------------------------------------------------------- Hormodochis_aggregata_CPC_37499 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gcacccccggggcccgtcctcgggggactgtagtcaccccaattacgtgcggtggcgacatcgacagtctgcgggaatctctccaccagctggggacaacccgcagccggacctctcgcgtccggcccacagactaaatgttgatgggtccgcgccctccctgcggattttcgatatagtcggtcgtcgggg--catata-ccccctcgagcaaacgttccgtaggtgaacctgcggaaggatcattaatagagaccgtcgccccagggaggaaacttcct-cggggcaacactctccaccccttgattgttatacctagttgctttggcgggtcgtggcttcacggccccgctggctccggctggcgagcacccgccgaaggtccaaacataaattcttgaagtaaacactgaagtctgat-ttaaactatgaaaatagcctaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctctggtattccggggggcatgcctgttcgagcgtcatttacacccctcaagcctagcttggtattgggagcctgccccccccgggggcaatcccgaaatgcagcggcggtgcggccggatttcctagcgcagtgactcatatcatcgctacaaggaatccgcgtcgtcccggccggacaacaaccaaattttaccacgat--------------------------------------------------------------------------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1084; END; BEGIN PAUP; LOG start = yes append = yes; set autoclose = yes warnreset = no torder = right; OUTGROUP outgroups / only; exclude 1 - . / only; include allfive / only; SET CRITERION = parsimony maxtrees = 1000 increase = no storebrlens = yes outroot = paraphyl; Pset gapmode = newstate; HSEARCH ADDSEQ = random NREPS = 100 SWAP = TBR; roottrees ROOT = OUTGROUP OUTROOT = MONOPHYL; Savetrees format = nexus brlens = yes maxdecimals = 0 file = HormodochisITSparsimony.trees; PSCORES 1 / TL = yes CI = yes RI = yes RC = yes HI = yes; Contree ALL / strict = yes treefile = HormodochisITSparsimonycons.tre; Bootstrap nreps = 1000 search = heuristic; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = HormodochisITSparsimonybootstrap.tre; Log stop = yes; END; BEGIN SETS; CHARSET allfive = 414 - 904; TAXSET outgroups = 1; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1084; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1084; END; BEGIN TREES; Title 'Trees from "HormodochisITSparsimony.trees"'; ID 016e17028e021; LINK Taxa = Taxa; TRANSLATE [0] 1 Phacidiella_eucalypti_EF110617.1, [1] 2 Hormodochis_melanochlora_KP004459.1, [2] 3 Hormodochis_aggregata_CPC_30737, [3] 4 Hormodochis_aggregata_CPC_30530, [4] 5 Hormodochis_aggregata_CPC_30685, [5] 6 Hormodochis_aggregata_CPC_30453, [6] 7 Hormodochis_aggregata_CPC_24159, [7] 8 Hormodochis_aggregata_CPC_24027, [8] 9 Hormodochis_aggregata_CPC_30580, [9] 10 Hormodochis_aggregata_CPC_30528, [10] 11 Hormodochis_aggregata_CPC_30990, [11] 12 Hormodochis_aggregata_CPC_30630, [12] 13 Hormodochis_aggregata_CPC_35475, [13] 14 Hormodochis_aggregata_CPC_26669, [14] 15 Hormodochis_aggregata_CPC_33913, [15] 16 Hormodochis_aggregata_CPC_33325, [16] 17 Hormodochis_aggregata_CPC_30683, [17] 18 Hormodochis_aggregata_CPC_35471, [18] 19 Hormodochis_aggregata_CPC_24593, [19] 20 Hormodochis_aggregata_CPC_30413, [20] 21 Hormodochis_aggregata_CPC_30017, [21] 22 Hormodochis_aggregata_CPC_33331, [22] 23 Hormodochis_aggregata_CPC_37499; TREE Fig._4 = ((2:7,((((17:0.0,18:0.0,19:0.0,20:0.0,21:1,22:0.0,23:1):1,(11:0.0,12:0.0,(13:0.0,14:0.0,15:0.0,16:0.0):1):1):1,5:0.0,6:0.0,7:0.0,8:0.0,9:0.0,10:0.0):1,3:0.0,4:0.0):1):8,1:9):0.0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1572347751297; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7975964762695551694; tell It; setDefaultOrder 22 0 20 21 14 15 16 17 18 19 8 9 10 11 12 13 1 2 3 4 5 6 7; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5284076758485264147; mqVersion 340; checksumv 0 3 3083503573 null getNumChars 1084 numChars 1084 getNumTaxa 23 numTaxa 23 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 332550.0 sumSquares -9.043516282136108E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 609; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 2402 1495; setLocation 8 23; setFont SanSerif; setFontSize 18; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7975964762695551694 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 016e17028e021; toggleUseWeights off; endTell; setAssignedID 996.1572344078954.923924026971074181; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1793 1423; setLocation 8 23; setFont SanSerif; setFontSize 18; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter off; toggleEven off; setFixedTaxonDistance 0; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:9,(2:7,(3:0.0,4:0.0,(5:0.0,6:0.0,7:0.0,8:0.0,9:0.0,10:0.0,((11:0.0,12:0.0,(13:0.0,14:0.0,15:0.0,16:0.0):1):1,(17:0.0,18:0.0,19:0.0,20:0.0,21:1,22:0.0,23:1):1):1):1):1):8):0.0;'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5284076758485264147 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 872; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1793 1423; setLocation 8 23; setFont SanSerif; setFontSize 18; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;