#NEXUS [written Tue Aug 31 17:38:02 CEST 2021 by Mesquite version 3.70 (build 940) at 201715inchMBP/192.168.2.86] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=18; TAXLABELS Chytridium_lagenaria_FJ804156.1 Gongronella_namwonensis_MN658482.1 'Gongronella namwonensis WW2-12-1' Gongronella_lacrispora_MH869737.1 Gongronella_sichuanensis_MK813857.1 Gongronella_guangdongensis_MN947304.1 Gongronella_brasiliensis_KY114933.1 Gongronella_butleri_MH990634.1 'Absidia cylindrospora var. nigra NG_058560.1' 'Absidia panacisoli NG_063948.1' Absidia_cylindrospora_MK674163.1 Absidia_cylindrospora_JX961699.1 Absidia_cylindrospora_var._cylindrospora_JN206588.1 'Absidia psychrophilia NG_058544.1' Absidia_psychrophilia_KT215321.1 'Absidia repens NG_058551.1' Absidia_pararepens_MT192308.1 Absidia_pararepens_AF113448.1 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1599; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Chytridium_lagenaria_FJ804156.1 -----------------------------------------------------------GGAGAAGACTACAGGGATTCCCCTAGTAACGGCGAGTGAAGCGGGATGAGCTCAACTTTGAAATCTCGCGGGTTT--CCCGTGCGAATTGTAGTCTAAAGAAGCGCTTTCGGG------GGCAGCCTGGGTAA--AAGTCCTTTGGAAGAAGGCATCAGAGAGGGTGAGAATCCCGTACCTGACCCGG-----------TGTCTGCTCCTATGTGATGCGTCTTCCTAGAGTCGGATAGCTTGGGAATGCTGTCCAAATCGGGTGGTAAATACCATCTAAGGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGTCTAAAGGGAACGGCTTGAAACCAGTATTGCGTGTAATAGATCAGCCGTCCATATGGGC---GGTGCACTCTATTGC-ATGC---GGGTCAGCATCGGTTTGATTTG-GGTTATAAAGCTGTCGACAGGTAGCTCC---------TCGGAGTGTTATAGTCTTCAGT--CATGCCCCGGATTAGACCGAGGAACGCAGC--CTTGTTACGGGGG------AACCTTCCGCCTCGGATGTCGCACTGTCAAACAACTTGTTGATTGCTGGTGTT----------AAGTCTGCGCACGGTTGGCTACCACTTCTGGGCTTAGGATGCTGACGAAATGGTTTTAAACCACCCGTCTTGAAACACGGACCAAGGAGTCCAACACATATGCGAGTCTTTGGGTGGCAAACCCACGGGCGTAATGAAAGT-------GAAAGGGTACCAACTTCGGT-GCAGTACCGACCGGTCTGGATTTTT----ATGATGGATCTGAGTATGAGCATATGTGCTGGGACCCGAAAGATGGTGAACTATGCCTGGATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATCTGGGTATAGGGGCGAAAGACTAATCAACCT??AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Gongronella_namwonensis_MN658482.1 ----------------------------------------------------------------------------------------------------------------------------------------------------------TGAA-----GTTTTTTGGGTGATTGGGCGACCGGATAAATAAGTCCTTTGGAAAGGGGCAACATAGAGGGTGACATTCCCGTCTTTGGTCCGAGTCAGTGCAGTCGCTACCCAGGAAACGA-----------CGAGTCAGGTTGTTTGGGAATGCAGCCTAAAATGGGAGGTAAATCTCTCCTAAAGCTAAATACTGGCGTAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGGGTCAAATAGTACGTGAAATTGTTGAAAGGGAACCGTATGAAAGTAGACTGGCTTGGTGATGATCAATG-TGTGTTTCGGCACGCATGCACTCATTGCCTTTGC---CAGCCAGCGGCAGTTTTTGCTAAAGGAAGAAAATCAGGGGAATGTGGCTTCGATTT-CGGTTGAAGTGTTATAGCTCCTGGTAAAATACTTTGGCAGAGACTGAGGCTAGCAGTGGGTTTTT----GGG------AACTTTGCGCGCTTGTCGTCCAATGGTCAAG----TTTTCTTCGG---ATGCTTGGTTATTGGGTGGCAACTCGTGTGATGCT-TCACCCTCCCGCTTAGGTCGCTGGCGTAATGCTTTTATATGACCCGTCTTGAAACACGGACCAAGGAGTCCACGTATAGAGCGAGTCGTTGGGTGGCAAACCCAAAGGCGAAGTGAAAGCGATT---GGGAAGAAACTGTAACAGGTGGCACTCCCGGGGGGATATGACGTTTTATACAGATTGACCTCACCCAAAGCTCTATGCATGGGACCCGAAAGATGGTGAACTATACTTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGAGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAACTGGTTCCTGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Gongronella namwonensis WW2-12-1' -----------------------------------------------------------------------------------------------------------------------------------------------------TAAACTGAA-----GTTTTTTGGGTGATTGGGCGACCGGATAAATAAGTCCTTTGGAAAGGGGCAACATAGAGGGTGACATTCCCGTCTTTGGTCCGAGTCAGTGCAGTCGCTACCCAGGAAACGA-----------CGAGTCAGGTTGTTTGGGAATGCAGCCTAAAATGGGAGGTAAATCTCTCCTAAAGCTAAATACTGGCGTAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGGGTCAAATAGTACGTGAAATTGTTGAAAGGGAACCGTATGAAAGTAGACTGGCTTGGTGATGATCAATG-TGTGTTTCGGCACGCATGCACTCATTGCCTTTGC---CAGCCAGCGGCAGTTTTTGCTAAAGGAAGAAAATCAGGGGAATGTGGCTTCGATTT-CGGTTGAAGTGTTATAGCTCCTGGTAAAATACTTTGGCAGAGACTGAGGCTAGCAGTGGGTTTTT----GGG------AACTTTGCGCGCTTGTCGTCCAATGGTCAAG----TTTTCTTCGG---ATGCTTGGTTATTGGGTGGCAACTCGTGTGATGCT-TCACCCTCCCGCTTAGGTCGCTGGCGTAATGCTTTTATATGACCCGTCTTGAAACACGGACCAAGGAGTCCACGTATAGAGCGAGTCGTTGGGTGGCAAACCCAAAGGCGAAGTGAAAGCGATT---GGGAAGAAACTGTAACAGGTGGCACTCCCGGGGGGATATGACGTTTTATACAGATTGACCTCACCCAAAGCTCTATGCATGGGACCCGAAAGATGGTGAACTATACTTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGAGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAACTGGTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Gongronella_lacrispora_MH869737.1 --------------------------------------------------AGCGGAGGAAAAGAAAATAACAATGATTCCCCTAGTAACGGSGAGTGAAGAGGGAAAAGCTCAAGTTTGGAAGCTTCGTGGCATAGCTACGACGCGTTGTAAACTGAA-----GTTTTTTGGGTGATTGGGCGACCGGATAAATAAGTCCTTTGGAAAGGGGCAACATAGAGGGTGACATTCCCGTCTTTGGTCCGAGTCAGTGCAGTCGCTACCCAGGAAACGA-----------CGAGTCAGGTTGTTTGGGAATGCAGCCTAAAATGGGAGGTAAATCTCTCCTAAAGCTAAATACTGGCGTAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGGGTCAAATAGTACGTGAAATTGTTGAAAGGGAACCGTATGAAAGTAGACTGGCTTGGTGATGATCAATG-TGTGTTTCGGCACGCATGCACTCATTGCCTTTGC---CAGCCAGCGGCAGTTTTTGCTAAAGGAAGAAAATCAGGGGAATGTGGCTTCGATTT-CGGTTGAAGTGTTATAGCTCCTGGTAAAATACTTTGGCAGAGACTGAGGCTAGCAGTGGGTTTTT----GGG------AACTTTGCGCGCTTGTCGTCCAATGGTCAAG----TTTTCTTCGG---ATGCTTGGTTATTGGGTGGCAACTCGTGTGATGCT-TCACCCTCCCGCTTAGGTCGCTGGCGTAATGCTTTTATATGACCCGTCTTGAAACACGGACCAAGGAGTCCACGTATAGAGCGAGTCGTTGGGTGGCAAACCCAAAGGCGAAGTGAAAGCGATT---GGGAAGAAACTGTAACAGGTGGCACTCCCGGGGGGATATGACGTTTTATACAGATTGACCTCACCCAAAGCTCTATGCATGGGACCCGAAAGATGGTGAACTATACTTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGAGTATAGGGGCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Gongronella_sichuanensis_MK813857.1 --------------------------------------------------------------------------------------------------------------------------------TGGCATAGCTACGACGCGTTGTAAACTGAA-----GTTTTTTGGGTGATTGGGCGACCGGATAAATAAGTCCTTTGGAAAGGGGCAACATAGAGGGTGACATTCCCGTCTTTGGTCCGAGTCAGTGCAGTCGCTACCCAGGAAACGA-----------CGAGTCAGGTTGTTTGGGAATGCAGCCTAAAATGGGAGGTAAATCTCTCCTAAAGCTAAATACTGGCGTAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGGGTCAAATAGTACGTGAAATTGTTGAAAGGGAACCGTATGAAAGTAGACTGGCTTGGTGATGATCAATG-TGTGTTTCGGCACGCATGCACTCATTGCCTTTGC---CAGCCAGCGGCAGTTTTTGCTAAAGGAAGAAAATCAGGGGAATGTGGCTTCGACTT-CGGTTGAAGTGTTATAGCTCCTGGTAAAATACTTTGGCAGAGACTGAGGCTAGCAGTGGGTTTTT----GGG------AACTTTGCGCGCTTGTCGTCCAATGGTCAAG----TTTTCTTCGG---ATGCTTGGTTATTGGGTGGCAACTCGTGTGATGCT-TCACCCTCCCGCTTAGGTCGCTGGCGTAATGCTTTTATATGACCCGTCTTGAAACACGGACCAAGGAGTCCACGTATAGAGCGAGTCGTTGGGTGGCAAACCCAAAGGCGAAGTGAAAGCGATT---GGGAAGAAACTGTTACAGGTGGCACTCCCGGGGGGATATGACGTTTTATACAGATTGACCTCACCCAAAGCTCTATGCATGGGACCCGAAAGATGGTGAACTATACTTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGAGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGAAGCTT-TTAGGTAGTTTTATGGGGTAAAGCGAATGATTAGAGGCCTAGGGGGCGCAATGCCCTTTACCTATTCTCAAACTTTAAATATGTAAGATGAGATTCATGCTTAATTGATGTTTCTCTTTCGAATACACAGCTTCTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAACGCAGAGTTAAAGAGCCGGAATTTACGCTCATGAGATACCAGAAAAGGTGTTAGTTCATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATGAACTAGCCCTGAAAATGGATGGCGCTCAAGCGTAATTCTTATACTCTGCCCATGAGGTTATATGGATGCTTCATGGAGTAGGCAGGCGTGGAGGG------------------------------------------------------------------ Gongronella_guangdongensis_MN947304.1 ---------------------------------------------------------GAAAAGAAAATAACAATGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAAAGCTCAAGTTTGGAAGCTTCGTGGCATAGGTACGACGCGTTGTAAACTGAA-----GTTTTTTGGGTGATTGGGCGACCGGATAAATAAGTCCTTTGGAAAGGGGCAACATAGAGGGTGACATTCCCGTCTTTGGTCCGAGTCAGTGCAGTCGCTACCCAGGAAACGA-----------CGAGTCAGGTTGTTTGGGAATGCAGCCTAAAATGGGAGGTAAATCTCTCCTAAAGCTAAATACTGGCGTAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGGGTCAAATAGTACGTGAAATTGTTGAAAGGGAACCGTATGAAAGTAGACTGGCTTGGTGATGATCAATG-TGTGTTTCGGCACGCATGCACTCATTGCCTTTGC---CAGCCAGCGGCAGTTTTTGCTAAAGGAAGAAAATCAGGGGAATGTGGCTTCGACTT-CGGTTGAAGTGTTATAGCTCCTGGTAAAATACTTTGGCAGAGACTGAGGCTAGCAGTGGGTTTTT----GGG------AACTTTGCGCGCTTGTCGTCCAATGGTCAAG----TTTTCTTCGG---ATGCTTGGTTATTGGGTGGCAACTCGTGTGATGCT-TCACCCTCCCGCTTAGGTCGCTGGCGTAATGCTTTTATATGACCCGTCTTGAAACACGGACCAAGGAGTCCACGTATAGAGCGAGTCGTTGGGTGGCAAACCCAAAGGCGAAGTGAAAGCGATT---GGGAAGAAACTGTTACAGGTGGCACTCCCGGGGGGATATGACGTTTTATACAGATTGACCTCACCCAAAGCTCTATGCATGGGACCCGAAAGATGGTGAACTATACTTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAATTTGAGTATAGGGGCGAAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Gongronella_brasiliensis_KY114933.1 -------------------------------------------------------------AGAAAATAACAATGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAAAGCTCAAGTTTGGAAGCTTCGTGGCATAGCTACGACGCGTTGTAAACTGAA-----GTTTTTTGGGTGATTGGGCGACCGGATAAATAAGTCCTTTGGAAAGGGGCAACATAGAGGGTGACATTCCCGTCTTTGGTCCGAGTCAGTGCAGTCGCTGCCCAGGAAACGA-----------CGAGTCAGGTTGTTTGGGAATGCAGCCTAAAATGGGAGGTAAATCTCTCCTAAAGCTAAATACTGGCGTAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGGACTTTGAAAAGAGGGTCAAATAGTACGTGAAATTGTTGAAAGGGAACCGTATGAAAGTAGACTGGCTTGGTGATGATCAATG-TGTGTTTCGGCACGCATGCACTCATTGCCTTTGC---CAGCCAGCGGCAGTTTTTGCTAAAGGAAGAAAATCAGGGGAATGTAGCTTCGATTT-CGGTTGAAGTGTTATAGCTCCTGGTAAAATACTTTGGCAGAGACTGAGGCTAGCAGTGGGT?TTT----GGG------AACTTTGCGCGCTTGTCGTCCAATGGCTAAG----TTTTCTTCGG---ATGCTTGGTTATTGGGTGGCAACTCGTGTGATGCT-TCACCCTCCCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Gongronella_butleri_MH990634.1 TTTAACCTGAAATCAGGCGGGACTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACAATGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAAAGCTCAAGTTTGGAAGCTTCGTGGCATAGCTACGACGCGTTGTAAACTGAA-----GTTTTTTGGGTGATTGGGCGACCGGATAAATAAGTCCTTTGGAAAGGGGCAACATAGAGGGTGACATTCCCGTCTTTGGTCCGAGTCAGTGCAGTCGCTGCCCAGGAAACGA-----------CGAGTCAGGTTGTTTGGGAATGCAGCCTAAAATGGGAGGTAAATCTCTCCTAAAGCTAAATACTGGCGTAAGACCGATAGCGAACAAGTACCGTGAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Absidia cylindrospora var. nigra NG_058560.1' ---------------------------------------------------GCGGAGGAAAAGAAAATAACAATGATTCCCCCAGTAACGGCGAGTGAACAGGGAAAAGCTCAAAGTTGGAACCTCCTGGCCCTAGGCCTGGCGGATTGTAAACTAAA-----GCTCTCGAGTAGTTTGGCTAGCCCAGTAATCAAGTTCTCTGGAAAGGGACGACAAAGAGGGTGAAATCCCCGTTTTTGGCTGGAGCATAGTCTTGCGTTTGCTTGGAAGCGA-----------AGAGTCAGGTTGTTTGGTATTGCAGCCTAAAGCTGGAGGTAAATCTCTCCTAAAGCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACCTTGAAAAGGGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACCGTATGAAATCAGCCTGTCCCTTTGGTAATCAACC-TGGACTTTGGTCTGGGTGCACT---TGCCAGTGGGTACAGCCTGCGACAATTTGATTTGGGGGAAAAAATCAGGGGGAATGTGGCCTCGGCTT-CGGTCGTGGTGTTATAGCCCTTTGAAAAATACCCTGGGTTGGATTGAGGACTGCAGCGAGCCCTTTTGGGGG---ATGAACTGTGGGCGCTTGGTTCGTGTTGGGAGGAAATCTCTACTTTGGGTAGTGTTCTTCCAGCATGAGCCAACCCGCCTACTTTT-TCTTTTTCTCGCTTAGGTCGCA-GCCTAATGA-TTTATATGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Absidia panacisoli NG_063948.1' ------------------------ACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACAATGATTCCCCCAGTAACGGCGAGTGAACAGGGAAAAGCTCAAAGTTGGAACCTCCTGGCCTTAGGTCTGGCGGATTGTAAACTAAA-----GCTCTAGAGTAGTTTGGCTGGCCCGGTAAAAAAGTTCTCTGGAAAGGGACGACAAAGAGGGTGAAATCCCCGTTTTTGGCCGGAGCATAGTCTCACGTTTGCTCTTTAGCGA-----------AGAGTCAGGTTGTTTGGTATTGCAGCCTAAAGTTGGAGGTAAATCTCTCCTAAAGCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACCTTGAAAAGGGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACGGTATGAAATCAGACTGTCTTTTTGGTAATCAGCC-TGGGCTTTGGCCTGGGTGCACT---TGCCAGTAAGTACAGCCTACGACAATTTGAAGCGTGGGAAAAAATCAGGGGGAATGTGGCCTCGGCTT-CGGCGGAGGTGTTATAGCCCCTTGAAAAATACCATGCTTTGGATTGAGGACTGCAGTGAGCCATTA---GGG---ATGAACTGTAGGCGCTTAGTTTCGGTAAGGAAGGAATCTCTGCTTCGGGTGGTGCCTTTTTTCTCGGGATTAACCCGTTTACTTTT-TCTTTTTCTCGCTTAGGTCGTAGGCATAATGATTTTATATCACCCGTCTTGAAACACGGACCAAGGAGTCCACCATGATTGCGAGTCTTTGGGTGTAGAAACCCATGGGCGGAAGGAAACTGACCAAGATATGAAGGCGCAA--GCTGGCAATATCCTCCAGCGAGGACGTTTTATACTGAATTGACTGAGAGAAAGCAATTATGATGGGACCCGAAAGATGGTGAACTATACTTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGAGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGCCGAAGTTTCCCTCAGGATAGCAGAAACTCACAAAGCAGTTTTATGGGGTAAAGCGAATGATTAGAGGCCTTGGGGGCGAAATGCCCTTAACCTATTCTCAAACTTTAAATATGTAAGACGCCTTTCTTTCTTAATTGAAGTTGGGCCTTTGAATGCAGAGTTTCTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAACGTAAAGTTAAGGTGCCCAAATCTACGCTCATGAGACACCACAAAAGGTGTTAGTTCATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATGAACTAGCCCTGAAAATGGATGGCGCTTAAGCGTAGTACCTATACTTTACCGTCAATGTAAAAGCGAAGCATTGACGAGTAGGCAGGCGTGGAGGTTTTGTATAGAAGCCGTGGGCGTGAGCTCTGGTGAAACAGCCTCTAGTGCAGATCTTGGTGGTAGTA Absidia_cylindrospora_MK674163.1 CTTGATCTGAAATCAGGCGGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAAATAACAATGATTCCCTCAGTAACGGCGAGTGAACAGGGAAAAGCTCAAAGTTGGAACCTCCTGGCCCTAGGTCTGGCGGATTGTAAACTAAA-----GCTCTCGAGTAGTTCGGCTAGCCTGGTAAAAAAGTTCTCTGGAAAGGGACGACATGGAGGGTGAAATCCCCGTCTTTGGCCAGAGCATAGTCCAACGTTTGCTTGGAAGTGA-----------AGAGTCAGGTTGTTTGGTATTGCAGCCTAAAGCTGGAGGTAAATCTCTCCTAAAGCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGAAAAGAGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACCGTATGAAATCAGCCTGTCTCTTTGGTAATCAACC-TGGAATTCGTTCTGGGTGCACT---TGCCGGTGAGT-CAGCCTGCGACAATTTGACTTGGGGGAAAAAATCGGGGGGAATGTGGCCTCGGCTT-CGGTCGTGGTGTTATAGCCCTTTGAAAAATACCCTGGGTTGGATTGAGGACTGCAGCGAGCCATTA---GGG---ATGAACTGTGGGCGCTTGGCTTTGCCTTGAAAGAAATCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Absidia_cylindrospora_JX961699.1 -------------------------------------------------------------AAGAAATAACAATGATTCCCTCAGTAC--GCGAGTGAACAGGGAAAAGCTCAAAGTTGGAACCTCCTGGCCCTAGGTCTGGCGGATTGTAAACTAAA-----GCTCTCGAGTAGTTCGGCTAGCCTGGTAAAAAAGTTCTCTGGAAAGGGACGACATGGAGGGTGAAATCCCCGTCTTTGGCCAGAGCATAGTCCAACGTTTGCTTGGAAGTGA-----------AGAGTCAGGTTGTTTGGTATTGCAGCCTAAAGCTGGAGGTAAATCTCTCCTAAAGCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGAAAAGAGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACCGTATGAAATCAGCCTGTCTCTTTGGTAATCAACC-TGGAATTCGTTCTGGGTGCACT---TGCCGGTGAGT-CAGCCTGCGACAATTTGACTYGGGGGAAAAAATCGGGGGGAATGTGGCCTCGGCTT-CGGTCGTGGTGTTATAGCCCTTTGAAAAATACCCTGGGTTGGATTGAGGACTGCAGCGAGCCTTT----GGG---ATGAACTGTGGGYGCTTGGCTTTGCCTTGAAAGAAATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Absidia_cylindrospora_var._cylindrospora_JN206588.1 ---------------------------------------------------GCGGAGGAAAAGAAAATAACAATGATTCCCTCAGTAACGGCGAGTGAACAGGGAAAAGCTCAAAGTTGGAACCTCCTGGCCCTAGGTCTGGCGGATTGTAAACTAAA-----GCTCTCGAGTAGTTCGGCTAGCCTGGTAAAAAAGTTCTCTGGAAAGGGACGACATGGAGGGTGAAATCCCCGTCTTTGGCCAGAGCATAGTCCAACGTTTGCTTGGAAGTGA-----------AGAGTCAGGTTGTTTGGTATTGCAGCCTAAAGCTGGAGGTAAATCTCTCCTAAAGCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGAAAAGAGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACCGTATGAAATCAGCCTGTCTCTTTGGTAATCAACC-TGGAATTCGTTCTGGGTGCACT---TGCCGGTGAGT-CAGCCTGCGACAATTTGACTTGGGGGAAAAAATCGGGGGGAATGTGGCCTCGGCTT-CGGTCGTGGTGTTATAGCCCTTTGAAAAATACCCTGGGTTGGATTGAGGACTGCAGCGAGCCTTT----GGG---ATGAACTGTGGGCGCTTGGCTTTGCCTTGAAAGAAATCTCTGCTTCGGGTGGTGTCTTTCTCGGCGGGGTCAACTCGCCTACTTTT-TCTTTTTCTCGCTTA-GTCGCA-GCATAATGATTTTATATGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Absidia psychrophilia NG_058544.1' -------------------------------------------------------------------TAACAATGATTCCCCTAGTAACGGCGAGTGAACAGGGAAAAGCTCAAAGTTGGAACCTCCTGGCCCTAGGCCCGGCGGATTGTAAACTAAA-----GCTCTCGAGTAGTTCGGCTAGCCTGGTAAAAAAGTTCTCTGGAAAGGGACGACATGGAGGGTGAAATCCCCGTCTTTGGCCAGAGCATAGTCCAACGTTTGCTTGGAAGTGA-----------AGAGTCAGGTTGTTTGGTATTGCAGCCTAAAGTTGGAGGTAAATCTCTCCTAAAGCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGAAAAGAGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACCGTATGAAATCAGCTTGTTTTTTTGGTAATCAACC-TGGACCTCGGTCTGGGTGCACT---TGCCAGTGAAA-CAGCCTGCGACAATTCGATTCGGAGGAAAAAATTATTGGGAATGTGGCCTCTGCCTTCGGTTGAGGTGTTATAGCCCTTTAAAAAATACTCTGGGTTGGATTGAGGACTGCAGCGAGCTCCCCTCGGGGGGCATGGGTTGTGGGTGCTTTGCTTTGGTAAAAGGGAAATCTCTACTTCGGGTAGTGTCTTTTTTATCGAGGTAAACTCGCCTATATTC-CCTTTCTCTCGCTTAGGTCGTAGGCATAATGATTTTATATGACCCGTCTTGAAACACGGACCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Absidia_psychrophilia_KT215321.1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGGCTAGCCTGG?AAAAAAGTTCTCTGGAAAGGGACGACATGGAGGGTGAAATCCCCGTCTTTGGCCAGAGCATAGTCCAACGTTTGCTTGGAAGTGA-----------AGAGTCAGGTTGTTTGGTATTGCAGCCTAAAGTTGGAGGTAAATCTCTCCTAAAGCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGAAAAGAGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACCGTATGAAATCAGCTTGTTTTTTTGGTAATCAACC-TGGACCTCGGTCTGGGTGCACT---TGCCAGTGAAA-CAGCCTGCGACAATTCGATTTGGAGGAAAAAATTATTGGGAATGTGGCCTCTGCCTTCGGTTGAGGTGTTATAGCCCTTTAAAAAATACTCTGGGTTGGATTGAGGACTGCAGCGAGCTCCCCTCGGGGGGCATGGGTTGTGGGTGCTTTGCTTTGG?AAAAGGGAAATCTCTACTTCGGGTAGTGTCTTTTTTATCGAGGTGAACTCGCCTACATTC-CCTTTCTCTCGCTTAGGTCGTAGGCATAATGATTTTATATGACCCGTCTTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ 'Absidia repens NG_058551.1' -------------------------------------------ATCAATAAGCGGAGGAAAAGAAAATAACAATGATTCCCCTAGTAACGGCGAGTGAACAGGGAAAAGCTCAAAGTTGGAACCTCCTGGCCCTAGGCCTGGCGGATTGTAAACTAAA-----GCTCTCGAGTAGTTCGGCTAGCCTGGTAAAAAAGTTCTCTGGAAAGGGACGACATGGAGGGTGAAATCCCCGTCTTTGGCCAGAGCATAGTCCAACGTTTGCTTGGGAGTGA-----------AGAGTCAGGTTGTTTGGTATTGCAGCCTAAAGCTGGAGGTAAATCTCTCCTAAAGCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGAAAAGAGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACCGTATGAAATCAGCTTGTCTCTTTGGTAATCAGCC-TGGGCTTCGGCCTGGGTGCACT---TGCCAGTGAGTACAGCCTGCGACAATTCGGGGCGAAGGAAAAAATCAGGGGGAACGTGGCCTCAGCTTCCGGCTGAGGTGTTATAGCCCTTTGAAAAATACTTTGCCCTGGATTGAGGACTGCAGCGAGCCGTTT---GGG---ATAGGCTAGGGGCGCTTTGACTTGGCTGGGAGGAAATCTCTATCTCTGGTAGTGTTCTTCCAGTCGGGCTGAACCCGCCCTTTTTA-CTTTTATCTCGCTTAGGTCGTAGGCATAATGA-TTTATATGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Absidia_pararepens_MT192308.1 -----------------------------------------------------------------------------------AGTAACGGCGAGTGAACAGGGAAAAGCTCAAAGTTGGAACCTCCTGGCCCTAGGTCTGGCGGATTGTAAACTAAA-----GCTCTCGAGTAGTTCGGCTAGCCTGGTAAAAAAGTTCTCTGGAAAGGGACGACATAGAGGGTGAAATCCCCGTCTTTGGCCAGAGCATAGTCCAACGTTTGCTTGGAAGTGA-----------AGAGTCAGGTTGTTTGGTATTGCAGCCTAAAGCTGGAGGTAAATCTCTCCTAAAGCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGAAAAGAGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACCGTATGAAATCAGCTTGTCTCTTTGGTAATCAACC-TGGACCTCGGTCTGGGTGCACT---TGCCAGTGAGTACAGCCTGCGACAATTCGGCGCGAAGGAAAAAATCRGGGGGAATGTGGCCTCAGCTT-CGGTTGTGGTGTTATAGCCCTTTGAAAAATACTTTGCTCTGGATTGAGGACTGCAGCGAGCCATTT---GGG---ATAGACTGTGGGCGCTTTGTTTGGACTGGGAGGAAATTTCTATCTCTGGTAGTGTTCTTTCAGTTCGAGCAAACTCGCCTACTTTT-CTTTTTTCTCGCTTAGGTCGTAGGCATAATGATTTTATATGACCCGTCTTGAAACACGGACCAAGGAGTCCACCATCATTGCGAGTCTTTGGGTGTAGAAACCCATGGGCGGAAGGAAACTGACCAAGATATGAAACCTTCACCGGTGGCAATATCCTCCAGCAAGGACGTTTTATACTGAACTGACTGAGAGAAAGCAATGATGATGGGACCCGAAAGATGGTGAACTATACTTGAATAGGGTGAAGCCAGAGGAAACTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Absidia_pararepens_AF113448.1 -------------------------------------------------------------------TAACAATGATTCCCCTAGTAACGGCGAGTGAACAGGGAAAAGCTCAAAGTTGGAACCTCCTGGCCCTAGGTCTGGCGGATTGTAAACTAAA-----GCTCTCGAGTAGTTCGGCTAGCCTGGTAAAAAAGTTCTCTGGAAAGGGACGACATAGAGGGTGAAATCCCCGTCTTTGGCCAGAGCATAGTCCAACGTTTGCTTGGAAGTGA-----------AGAGTCAGGTTGTTTGGTATTGCAGCCTAAAGCTGGAGGTAAATCTCTCCTAAAGCTAAATATTGACGAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGAAAAGAGGGTCAAAAAGTACGTGAAATTGCTGAAAGGGAACCGTATGAAATCAGCTTGTCTCTTTGGTAATCAACC-TGGACCTCGGTCTGGGTGCACT---TGCCAGTGAGTACAGCCTGCGACAATTCGGCGCGAAGGAAAAAATCAGGGGGAATGTGGCCTCAGCTT-CGGTTGTGGTGTTATAGCCCTTTGAAAAATACTTTGCTCTGGATTGAGGACTGCAGCGAGCCATTT---GGG---ATAGACTGTGGGCGCTTTGTTTGGACTGGGAGGAAATTTCTATCTCTGGTAGTGTTCTTTCAGTTTGAGCAAACTCGCCTACTTTTCTTTTTTTCTCGCTTAGGTCGTAGGCATAATGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; BEGIN mrbayes; outgroup Chytridium_lagenaria_FJ804156.1; charset locus1 = 1 -1599; charset excludedchars = 1 -154 770 -1599; exclude excludedchars; partition AllLoci = 1 : locus1; log start filename = 000MucoromycotinaLSU.log; END; BEGIN mrbayes; set partition = AllLoci; prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); lset nst = 6 rates = invgamma; unlink shape = ( all ) pinvar = ( all ) statefreq = ( all ) revmat = ( all ); mcmcp ngen = 10000000000 nchains = 4 printfreq = 1 temp = 0.15 samplefreq = 1 savebrlens = yes stoprule = yes stopval = 0.01 filename = 000MucoromycotinaLSU; mcmc; sump; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1- 1599; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1- 1599; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1- 1599; END; BEGIN TREES; Title 'Fig. 7. Overview Cunninghamellaceae phylogeny'; ID 017b9c57584b13; LINK Taxa = Taxa; TRANSLATE [0] 1 Chytridium_lagenaria_FJ804156.1, [1] 2 Gongronella_namwonensis_MN658482.1, [2] 3 'Gongronella namwonensis WW2-12-1', [3] 4 Gongronella_lacrispora_MH869737.1, [4] 5 Gongronella_sichuanensis_MK813857.1, [5] 6 Gongronella_guangdongensis_MN947304.1, [6] 7 Gongronella_brasiliensis_KY114933.1, [7] 8 Gongronella_butleri_MH990634.1, [8] 9 'Absidia cylindrospora var. nigra NG_058560.1', [9] 10 'Absidia panacisoli NG_063948.1', [10] 11 Absidia_cylindrospora_MK674163.1, [11] 12 Absidia_cylindrospora_JX961699.1, [12] 13 Absidia_cylindrospora_var._cylindrospora_JN206588.1, [13] 14 'Absidia psychrophilia NG_058544.1', [14] 15 Absidia_psychrophilia_KT215321.1, [15] 16 'Absidia repens NG_058551.1', [16] 17 Absidia_pararepens_MT192308.1, [17] 18 Absidia_pararepens_AF113448.1; TREE 'Fig. 7. Overview Cunninghamellaceae phylogeny' = (1:0.6296525,((5:0.001175657,6:0.001353321):0.002503453,2:0.001217582,3:0.001239884,4:0.001229177,(7:0.003039629,8:0.004412206):0.006357126):0.2536454,((9:0.05213489,10:0.09903486):0.02220156,((11:0.005125773,12:0.001437764,13:0.001706616):0.02516287,((14:0.004177993,15:0.003043593):0.06704405,(16:0.0461916,(17:0.002018632,18:0.003604906):0.01901988):0.03915016):0.02622052):0.01272464):0.269802); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1630424282899; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1692261655280459809; tell It; setDefaultOrder 17 2 3 4 0 1 5 6 7 8 9 10 11 12 13 14 15 16; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7809754289552785029; mqVersion 370; checksumv 0 3 318264962 null getNumChars 1599 numChars 1599 getNumTaxa 18 numTaxa 18 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 320351.0 sumSquares -2.305843009213693E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 259; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 826 668; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1692261655280459809 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1692261655280459809; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 567 596; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1692261655280459809 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 017b9c57584b13; toggleUseWeights off; endTell; setAssignedID 2128.1630415578021.8265114860576103755; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 567 596; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; setSelectedTaxonHighlightMode 1; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; setTaxonNameStyler #mesquite.trees.NoColorForTaxon.NoColorForTaxon; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.6296525,(2:0.001217582,3:0.001239884,4:0.001229177,(5:0.001175657,6:0.001353321):0.002503453,(7:0.003039629,8:0.004412206):0.006357126):0.2536454,((9:0.05213489,10:0.09903486):0.02220156,((11:0.005125773,12:0.001437764,13:0.001706616):0.02516287,((14:0.004177993,15:0.003043593):0.06704405,(16:0.0461916,(17:0.002018632,18:0.003604906):0.01901988):0.03915016):0.02622052):0.01272464):0.269802);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7809754289552785029 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 567 596; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleColorOnlyTaxonNames off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;