NEXUS
[File created by TreeBASE:  7/26/07  20:56:28]
[Matrix accession#: M401]

BEGIN TAXA;
	TITLE M401;
	DIMENSIONS  NTAX=19;
	TAXLABELS
		Manduca_sexta	Archaeopsylla_erinacei	Panorpa_communis	Simulium_euryadminiculum	Chironomus_tentans	Culex_pipiens	Aedes_albopictus	Trichocera_regelationis	Limonia_nebulosa	Tipula_paludosa	Psychoda_cinerea	Sylvicola_fenestralis	Dilophus_febrilis	Anapausis_inermis	Bolitophila_cinerea	Crinodiplosis_cilirus	Bradysia_coprophila	Tabanus_sudeticus	Drosophila_melanogaster
	;
END;

BEGIN CHARACTERS;
	TITLE M401;
	DIMENSIONS NCHAR=663;
	FORMAT DATATYPE = DNA MISSING = N GAP = -  ;
	MATRIX
		Manduca_sexta                  NNNNNNNNGNATTTCCTTAGTAGCGGCGAGCGAACAGGAATATAGCCCAGCACTGAATCCCGCTGTTG----TAA------CGGCAGCGGGAGATGTGGTGTTCGGGAGGTTCCG-CTTTCTCGTCACCGATACTCCT---GTCCAAGTTCGTCTTGAACGGGGC-CG-TTTTCCCGAAGAGGGTGCCAGGCCCGTAGCGACGGAGGGCGGT---GGCGA-GA-GGGACT----CTCCTCAGAGTCGGGTTGCTTGAGAGTGCAGCCCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAATATTACCGAGCGAAAGGGAATCCGGTTCCTATTCCGGAACCCGGCAGCGGAACCGTTTCAATAAT---------CGTTCCCTCGTTTAATAGCGAGT----------------GTTCGACGGGGTAACCCAAAGT---GGCCTGAAGACGCCGCCGAGAGGTCCGGGAAGAGTTTTCTTTTCTGCCT-GAGCGTTCGA-GTTCCATGGAATCCTATAGAAGGGAGATATGGTTCGG--AACGCGAAGAGCAC-GCATTTGCG-GCGGTGTCC-GGATACTCTCTGCGGACCTTGAAAATTCAGGTGAGGGATGTACGTGGAAATGTCGCGCCGGTTCGTACCCATATCNGCAGCAGGTCTCCA
		Archaeopsylla_erinacei         NNNNNNNNNNNNNNCCTCAGTAGCGGCGAGNGAACAGGGAA-GAGCCCAGCACTAAATCCCGCGGCCG----GAGA----CGGACCGTGGGAAATGTAGTGTTAGGGAGGATCCAATTATCTCGGTGCGTCGCGGCGA---GTTCAAGTCCATCTTGAATGGGGC-CA-TTTACCCATAGAGGGTGCCAGGCCCGTAGCGACCGTTGCGCGT---ATCGA-GA-GGATCT----CTCCTCAGAGTCGAGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAATATGACCNNNNNAAAGGGAATCCGGTTCCTATTCCGGAACCCGGCAGCGGAACCGTTTACAAGT----------CGGGCCCTCGCAAGAGA----------------------GTTCGTCGGGGTAACCCAAAAT---GACCTGGAGACGCCGTCGGGAGATACGGGGAGAGTTTTCTTTTCTGTAT-GAGCGTTCGA-GTTCCCTGGAATCCTCTAGCAGGGAGATAGGGTTTGG--AACGCGAAGAGCAC-GCAGTTGCG-GCGGTGTCC-GTATCTTCCCCTCGGACCTTGAAAATCCAGGAGAGGG--CCACG-GGAGGTGTCGCGCCGGTTCGTACCCATATCCGCAGCAGGTCTCCA
		Panorpa_communis               NCTAACTAGGATTCCCTTAGTAGCGGCGAGCGAACAGGGAA-GAGCCCAGCACTGAATCCCCTAGCCG----ATTT----CGGATAGTGGGAAATGTAGTGTATAGGAGGATTCATTTATCCTGAGATCATGTAGCGC---GTTTAAGTCCATCTTGAATGGGGC-CA-ATTACCCATAGAGGGTGCCAGGCCCGTAA-AACTGTTACTGAT---CTTGG-GA-GGATCT----CTCCTTTGAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAATATAACCGGGCGAAAGGGAATCCGGTTCCTATTCCGGAACCCGGCAGCGNAACCGTTAACAAGT----------CGGGCCCTCGAAAGAGA----------------------GTTCGTCGGGGTAACCCAAAAA---GACCTGGAGACGCCGTCGGGAGATCCAGAAAGAGTTTTCTTTTCTGTAT-GAGCATTCGA-GTTCCCTGGAATCCTTTAGCAGGGAGATAGGGTTTGG--AATGCGAAGAGCAC-GCAGTTGCG-GCGGTGTCT-GGATCTTCCCCTCGGACCTTGAAAATCCAGGAGAGGG--CCACGTGGAGGTGTCGCGCCGGTTCGTACCCATATCCGCAGCAGGTCTCCN
		Simulium_euryadminiculum       ACTAAATAGGATTCCCCTAGTAGCGGCGAGCGAAAAGGGAA-AAGTCCAGCACGTAGAATCGCAACT-----GTTAT----GGTTGTTGATTGATGCCGTGTACAGGTTCGGCCATTATCTCATATTATAATTAGTAT---GTTCAAGTCCTTCTTGAATGAGGC--AATATACCCACAGAGGGTGATAGGCCCGTATAACTGCTATGATA----TATGA-GA-GGTTGT----TACCTAGGAGTCGTGTTGCTTGAAAGTGCAGCACTAAGCGGGAGGTAAACTCCTTCTAAGACTAAATATTACCGAGCGAAAGGGAATCCGGTTACAATTCCGGAACCTGTT-GAGTATACGTTTGCATTATGTGACCGCCTACATTTATGTAGGTTATCCATT----------------ATGTATCTCGGCAACGAGAAGCC--AATATAAAGAAGCTATCGGGATGTAACAAAAGAGTTTTCTTTTCTGTTT-TACAGTTGTACGCACCATGGAAGTCTTTCATAGAGAGATATGGTGTAATAGGCTGGTAGAGCATGGCATTCAGTTGCTGTGTTG-TTACAATCTCCTTAGACCTTGAAAATTTATATTGGGG--TCACGCAAAC---TCTCAACAGACCGTACCG-AATCCGCAGCAGGTCTCCA
		Chironomus_tentans             NNNNNNNNNNNNNCCCTTAGTAGTGGCGAACGAAACGGGAT-CAGCCCATCACGTAGGATCATAGGC-----TTAATT---GTCTATTGATCGATTCCGTGTAAAGGAGGGTCCATTATCTTGCACATATAAACATCAT--ATTTAAGTCCAGCTTGAATGCGGCTCAATATACCCACAGAGGGTGCCAGGCCCGTATATGTATGATGCTTG---TGTAA-GT-GGGCTATCAACTCCTAGGAGTCATGTTGCTTGATAGTGCAGCATTAAGTGGGAGGTAAACTCCTTCTAAGGCTAAATATTACCGAGCGAAAGGGAATACGGNTCCAATTCCGTAACCTATT-GAGTATACGTT-----------------TGTTATTTGAATTCGTTTCGAA-----------------TAACATCTCGGTAACGAGAAGCT--CTCATAGAGACGTCAATGGGAGGTATCGAAAGAGTTTTCTTTTCTGTTT-TACAATCGTACGTACCATGGAAGTCTTTCATAGAGAGATATGGTATAACAGATTGGTAGAGCATGACATTAAATTGTTGTGTCG-GTATACTCTCATTGGACCTTGAAAATCTATGAAAGGG--ACACGATAAA--TTCTCAATAGCCTGTACCCGAATCCGCAGCAGGTCTCCA
		Culex_pipiens                  NNNNNNNMGGATTCCCCGAGTAGCTGCGAGCNAAAAGGGAA-GAGCTCAGCACGCAGGGGTGGCGC-----ACTACCC----GCGTCTACCCGGTTCCGTGTACTGGAAATTTTGTCATCTGCCATGCCCGGCGCAGT---GTCCAAGTTCAACTAGAATGTGGC-TTTTACTCCCATAGAGGGTGATAGGCCCGTAGGACGGCGCTGA------TGGTG-GA-AAATTT----TTCCATGGAGTCGTGTTGCTTGATAGTGCAGCACAAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATATCACCGAGCGAAAGGGAATCCGGTTACAATTCCGGAGCCTGTT-GGGTATACGTTTGCA-------------TTGGCGGTAATACCGGTAACACGGTAGCGCCTT------TGTAATCATGGCAACATGAATCCTTTCCTTCGAGAAGCCAACAAGAGATATCGGAAGAGTTTTCTTTTCTGTTT-TACAGCCACACTGGCCATGGAAGTCTTTCATAGAGAGATATGGTCGGACAAGCTGGTAGAGCATGGTATTAAATTGCTGTGTCG-ATATTCTCTTCTTGGACCTTGAAAATCGAAGACTGGG--GCACGCAAAC---TCCCAACAGCTTGTACCG-AATCCGCAGCAGGTCTCCA
		Aedes_albopictus               ACTAACAAGGATTCCCTGAGTAGCTGCGAGCGAAACGGGAA-GAGCTCAGCACGCAGGGGCGATGCA-----CTGG-----TGTATCTGCCCGGTTCCGTGTACTGGAGAGTTCGTTATCTGCCGTAACCGGTCGCTG---GTTCAAGTTCAACTAGAATGTGGC-TTTTACTCCCAGAGAGGGTGATAGGCCCGTAGAGCGGCGCACCGA----TGGTA-GA-AGATCT----TTCCATGGAGTCGTGTTGCTTGATAGTGCAGCACAAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATATCACCGAGCGAAAGGGAATCCGGTTACAATTCCGGAGCCTGTT-GGGTATACGTTTGCA-------------TTGGCGTCCCATACCGGCAACGGTAGCGCCTT-------TGTAATCATGGCAACATGAATCCTTTTCTTCGAGAAGCCAACAAGAGATATCGGAAGAGTTCTCTTTTCTGTTT-TACAGTCACACTAGCCATGGAAGTCTTTCATAGAGAGATATGGTTGGACAGGCTGGTAGAGCATGGTATTAAATTGCTGTGTCG-ATATTCTCTTCTTGGACCTTGAAAATCGAAGACTGGG--GCACGCAAAC---TCCCAACAGCTTGTACCG-AATCCGCAGCAGGTCTCCA
		Trichocera_regelationis        NNNNNNNNNGATTCCCTTAGTAGCGGCGAGCGAAACGGGAT-TAGCCCAGCACCAAGTCCTCTAGCCT----TTAAC---GGGTTAGTAGGAGATGCGGTGTATAGGTAAATCTATATTCTTATATGTTCCAATAC-----GTTCAAGTCCATCTTGAATGGGGC-CATTTAACCCATAGAGGGTGCCAGGCCCGTGGTAACTATTGTTAT----TATAA-GA-AGATTT----TGCCTTAGAGTGGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATTTAAGGCTAAATATAANNGAGCGAAAGGGAATACGGTTCCAATTCCGTAACCTGTT-GAGTATACGTTTGTTAAAT---------TGGGTTCTTTTAATTACTNTAATTAAGGT----------ACTCATCCTGGTAACAGGAACA---ACCATAGAGAAGCCGTCGAGAGATATCGGAAGAGTTTTCTTTTCTGTTT-TATAGTCGCA-TCACCATGGAAGCCTTTCGAAGAGAGATATGGTGAATT-GTCTAGAAGAGCATGGCATTTACT-GCTGTGTCG-ATATTTTCTCCTCGGACCTTGAAAATCTATGGTAGGG--CCACGCAAAT---TCTCNACAGACCGTACCGATATCCGCAGCTGGTCTCCA
		Limonia_nebulosa               NNNNNNNNAGATTCCCTGAGTAGCGGCGAGCGAAACGGGAT-AAGCCCATCACAAAGTCCTCTTTC----TTTTAAC---GAGATTGTTGGAAATGCTGTGTCAATGTGAATTCATTATCTTATATGCATATGGTAC----GCTTAAGTTCATCTTGAATGGGGC-CA-TTTACCCACAGAGGGTGCCAGGCCCGTAT-AGCTACTATTGTA---TATTA-GA-GAATTT----TGCATCAGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAGGCTAAATATAACCGACCGAAAGGGAATACGGTTCCAATTCCGTAACCTGTT-GAGTATACGCTTAAAAGAT---------TGGATATTAACATGCAATGATGAAT--------------ATTCATCCTGGTAACAGGAACA---ACCATAGAGACGCTGTCGGGATATATCGAAAGAGTTTTCTTTTCTGTTT-TATAGAAGCA-TAACCATGGAAGTTTTTCGCAGAGAGATATGGTTAATA-GTCTAGAAGAGCATGACATTTACT-GTTGTGTCG-ATATTCTCCCCTCAGACCTTGAAAATCTATGGTAGGG--CTACGCAAAT---TCTCAACAGACCGTACCGATATCCGCAGCTGGTCTCCA
		Tipula_paludosa                NNNNNNNNAGATTTCCTGAGTAGCGGCGAGCNAAATGGGAA-AAGTCCAGCATTAAGTCCTTTTACTG----ATTACT--CGGTAGAATGGAAATTCAATGTAAAGGAGTATCTATTATCCTAAATTTTTAATTATAT---GTCCAAGTCCATCTTGAATGGGGC-CA-TTTACCCACAGAGGGTGCCAGGCCCGTAGTGACTATAATCTTG---TTTAG-GA-AGATAT----CTCTAGAGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTTGGTGGTAAACTCCATCTAAGACTAAATATGACCGAGCGAAAGGGAATACGGTTCCAATTCCGTAACCTGTT-GAGTGTACGCTTTTAAGAT---------TGGATATTAACATTTTAAGATGANT--------------ATTCATCCTGGTAACAGGAACT---GCCGTAGAGACGCCGTCGGGATATACCGAAAGAGTTTTCTTTTCTGTTT-CATAGACATA-CTACCATGGAAGTCTTTCGCAGAGAGATATGGTAAAAA-GTCTAGAAGAGCATGACATTTACT-GTTGTGTCG-GTATTCTCCCTTCGGACCTTGAAAATCTATGGAAGGG--TTACGCAAAT---TCTCAACAGACCGTACCGATATCCGCAGCTGGTCTCCA
		Psychoda_cinerea               ACTAACTAGGATTCCCTGAGTAGCGGCGAGCGAAACGGGAA-AAGCCCAGCACTTAGCCCATTGGCT----CATAAAC---GGCCAATTGGGGATGCAGTGTAT-GGAGTGTCCATTAACTCATTACAATAGATGATGTACGTTCAAGTCCATCTTGAATGGGGC-CATTTTACCCATAGAGGGTGCCAGGCCCGTGGAACTACCATCTGT----AATTT-GT-GGACTA----CTCTTAAGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAGGCTAAATATTACCGTGCGAAAGGGAATACGGTTCCAATTCCGTAACCTATT-GAGTATACGTTTATTG------------TGGGTACTGGGCCTTGCTTGCAAGTGTTCCGGTTTT---ACTCATCCTGGCAACAGAAGCT---GGCATAGAGAAGCCGTCGAAGCGTACCGAAAGAGTTTTCTTTTCTGTTT-TATAGTCGTA-TTACCATGGAAGTCTTTCGAAGAGAGATATGGTAAATG-GACTAGAAGAGCATGGCCTATATT-GCTGTGTCGCGTACGTCTTCCTCGGACCTTGAAAATCTATGCCAGGG--CCACGTAAACA-TTCTCAATAGACCGTACCAATATCCGCAGCAGGTCTCCA
		Sylvicola_fenestralis          NNNNNNNNGGATTCCCTTAGTAGCGGCGAGCGAAACGGGAA-AAGCCCAGCACTAAGTTCTCTAATCT----GTTGT---GGGTTAGTAGAAGATGCAGTGTAT-GGAGAGTCTACTATCTCATATGTTACGGCAATAC--GTTCAAGTCCTTCTTGAATGGGGCCCA-TTTACCCATAGAGGGTGCCAGGCCCGTAGTGACTGTTGTCCGTTTGCATGA-GA-AGACTT----CTCTTAAGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTTGGTGGTAAACTCCATCTAAGGCTAAATACAACCGAGCGAAAGGGAATACGGTTCCAATTCCGTAACCTGTT-GAGTATACGTTTGTTTAATAAAATA---TGGGTCCCTTAGT--------------------------ACTCATCCTGGCAACAGGAACA---ACCATAGAGAAGCCTTCGAGAGGTACTGGAAGAGTTTTCTTTTCTGTTGTAACAACTGTA-TAACCATGGAAGTCTTTAAAAGAGAGATATGGTTAATG-AGTTGGAAGAGCATGACATTTATT-GTTGTGTCA-GTACTTTCTCCTTGGACCTTGAAAATCTATGGTGGGG--CCACGCAAAC--ATCTCAACAGACCGTACCGATATCCGCAGCCGGTCTCCA
		Dilophus_febrilis              NNNNNNNNNNNTTCCCNTAGTAGCGGCGAGCGAAACGGGAT-AAGTTCAGCACTAAGTCCTCTAA-------TTAAT------TTAG-AGGAGATTCAGTGTAT-GGAAAGTCTATTACTTTATATAAAGATGATAC----GTTCAAGTCCATCTTGAATGGGGC-CATTTAACCCGCAGAGGGTGCCAGGCCCGTAGTAACTATTATCAA----TATAAAGA-AGGCTC----TTCCAAAGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAATATAACCAAGCGAAAGGGAATACGGTTCCAATTCCGTAACCTGTT-GAGTATACGTTTGTTTATTAAAAA----TGGGTCTCGTTAC--------------------------ACTCATCCTGGTAACAGGAACA---ACCATAGAGAAGCCTTCGAGAGATACTGGAAGAGTTTTCTTTTCTGTTG-AACAATCGTA-TCACCATGGAAGTCTTTCATAGAGAGATATGGTGAATG-GATTGGAAGAGCATGACATTTACT-GTTGTGTCA-GTATTATCTCCTTGGACCTTGAAAATCTATGGTGGGG--CCACGCAAAC--ATCTNAACAGACCGTACCGATATCGGCAGCCGGTCTNNA
		Anapausis_inermis              ACTAACTAGGATTCCCTGAGTAGCGGCGAGCGAAATGGGAT-AAGCTCAGCACTAAGCCTTCTGGTT----CTAAAC----GACTAGTTAGGGATGCAGTGTAT-GGAAAATCTATTATCTTATATATATACAGCATAT--GTTCAAGTCCATCTTGAATGGGGC-CA-TTTACCCAAAGAGGGTGCCAGGCCCGTAGTAACTATTGTATTA---TATAG-GA-GGATTC----TTCCAAAGAGTCGTGTTGCTTGATAGTGCAGCACAAAGTTGGTGGTAAACTCGATCTAAAGCTAAATATTACCGAGCGAAAGGGAATACGGTTCCAATTCCGTAACCTGTTTGAGTATACGTTTGTTGATAAAAA-----TGGGTTCATTATATATGC---------------------ACTCATCCTGGTAACAGAAACA---ACCATAGAGAAGCCTTCGAGAAATACTGAAAGAGTTTTCTTTTCTGTTG-AACAATTGTA-TCACCATGGAAGTCTTTTACAGAGAGATATGGTGAATG-AATTGGAAGAGCATGACATTTACT-GTTGTGTCA-GTATTATCTCCTTGGACCTTGAAAATCTATGGTAGGG--CCACGCAAAC--ATCTCAACAGACCGTACCGATATCCGCAGCCGGTCTNNA
		Bolitophila_cinerea            NNNNNCTAAGATTCCTTTAGTAGCGGCGAGCGAAACAGGAA-AAGCCCAGCACTAAGCCCTCCAGTC-----GTCCT----GGCTGGTAGGGGATGCAGTGTAT-GGGAAGTCTATTATCTTATATGACGGTAGCAC----GTTCAAGTCCATCTTGAATGGGGC-CATTTAACCCATAGAGGGTGCCAGGCCCGTAGCAACTGTTACCAG----TATAA-GA-AGATTT----TTCCGAAGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTTGGTGGTAAACTCCATCTAAGGCTAAATATAACCGAGCGAAAGGGAATACGGTTCCAATTCCGTAACCTGTT-GAGTATACGTTTGTTTATTAAAAA----TGGGTCTTATTAC--------------------------ACTCATCCTGGTAACAGGAACA---ACCATAGAGAAGCCTTCGAGAGATACTGGAAGAGTTTTCTTTTCTGTTG-AACAATCGTA-TCACCATGGAAGTCTTTCACAGAGAGATATGGTGAATG-GATTGGAAGAGCATGACATTTACT-GTTGTGTCA-GTATTTTCTCCTTGGACCTTGAAAATCTATGGTAGGG--CCACGCAAAC--ATCTCAACAGACCGTACCGATATCCGCAGCCGGTCTCCA
		Crinodiplosis_cilirus          ATTAAATAAGATTCCTTTAGTAGCGGCGAGCGAAACAGGAT-TAGCCCAGCACTAAGTCATCCAATT-----TTTAT----GATTGGTATGAGATGCAGTGTAT-GGAAAGTCTATTATCTGGTGTTGTATTCAATAC---GTTCAAGTCCATCTTGAATGGGGC-CAATATATCCACAGAGGGTGCCAGGCCCGTAGAAGCTATTGTTTTG---CATCA-GA-AGGCTT----TTCCAAAGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAGGCTAAATATAACCGGGCGAAAGGGAATACGGTTCCAATTCCGTAACCTGTT-GAGTATACGTTTGTTTATTAAAAG----TGGGTCTTGTTAC--------------------------ACTCATCCTGGCAACAGGAACA---ACCATAGAGAAGCCTTCGAGAGATATTGGAAGAGTTTTCTTTTCTGTTG-AACAATCGTA-TAACCATGGAAGTCTTTCACAGAGAGATATGGTTAATG-GATTGGAAGAACATGACATTTACT-GTTGTGTCA-ATATTTTCTCCTTGGACCTTGAAAATCTATGGTAGGG--CCANGCAAAT--TTCTCAACAGACCGTACCGATATCCGCAGCCGGTCTCCA
		Bradysia_coprophila            ATTAACTAAGATTCCTTTAGTAGCGGCGAGCGAAACAGGAT-AAGCCCAGCACTAAGCTCTCCGGTC-----GTCCT----GACTGGTAGAGGATGCAGTGTAT-GGAAAGTCTATTATCTTATGCAACGATAATAT----GTTCAAGTCCATCTTGAATGGGGC-CATTAAACCCATAGAGGGTGCCAGGCCCGTAGCAGCTATTATCAG----TATAA-GA-AGGCTT----TTCCAAAGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTTGGTGGTAAACTCCATCTAAGGCTAAATATGACCAAGCGAAAGGGAATACGGTTCCAATTCCGTAACCTGTT-GAGTATACGTTTGTTTATTAAAAA----TGGGTCTTATTAC--------------------------ACTCATCCTGGCAACAGGAACG---ACCATAGAGAAGCCTTCGAGAGATACTGGAAGAGTTTTCTTTTCTGCTA-AACAAACGTA-CCACCATGGAAGTCTTTTATAGAGAGATATGGTGGATG-GCTTGGAAGAGCATGACATTTACT-GTTGTGTCA-GTATTTTCTCCTTGGACCTTGAAAATCTATGGTGGGG--CCACGCAAAC--TTCTCAACAGACCGTACCGATATCCGCAGCCGGTCTCCA
		Tabanus_sudeticus              NNNNNNNNGGATTTTCTTAGTAGCGGCGAGCGAAAAGAAAA-AAGTTCAGCACTAAGTTATTTTGTTA----TTTTT---TAACAAATATAAGATGCAGTGTAT-AGAATATCTATTATCTAGTATATTAAATTAATA---GTTCAAGTCCTTCTTAAATGGGGC-CA-TTTACCCATAGAGGGTGATAGGCCCGTAGAAACATTATTAAA----TACTA-GA-AGATAT----TTCTTAAGAGTCGTGTTGCTTGATAGTGCAGCACTAATTTGGTGGTAAACTCCATCTAAAACTAAATATAACCGAACGAAAGGGAATACGGTTCCAATTCCGTAACCTGTT-AAGTATACGTTTGTTATTAAAAAA----TGGGCTTTAAT----------------------------GCTCATCGTGGCAACACAAACA---ATCATAAAGAAACCGTCGAGAGGTATCGGAAGAGTTTTCTTTTCTGTTT-TATAGTTGTA-TTACCATGGAAGTCTTTCGAAGAGAGATATGGTAAATG-AACTAGAAGAGCATAGCATATACT-GCTGTGTCG-ATATTTTCTCCTCGGGCCTTGAAAATTTATGGTAGGG--TTACGCAAAC--TTCTTAACAGGCCGTACCAATATCCGCAGCTGGNCTCCA
		Drosophila_melanogaster        NNNNNNNNGGATTTTCTTAGTAGCGGCGAGCGAAAAGAAAA-CAGTTCAGCACTAAGTCACTTTGTC-----TATAT----GGCAAATGTGAGATGCAGTGTAT-GGAGCGTCAATATTCTAGTATGAGAAATTAACG---ATTTAAGTCCTTCTTAAATGAGGC-CA-TTTACCCATAGAGGGTGCCAGGCCCGTATAACGTTAATGAT-----TACTA-GA-TGATGT----TTCCAAAGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAATATAACCGAACGAAAGGGAATACGGTTCCAATTCCGTAACCTGTT-GAGTATCCGTTTGTTATTAAATA-----TGGGCCTCGT-----------------------------GCTCATCCTGGCAACAGGAACG---ACCATAAAGAAGCCGTCGAGAGATATCGGAAGAGTTTTCTTTTCTGTTT-TATAGCCGTA-CTACCATGGAAGTCTTTCGCAGAGAGATATGGTAGATG-GGCTAGAAGAGCATGACATATACT-GTTGTGTCG-ATATTTTCTCCTCGGACCTTGAAAATTTATGGTGGGG--ACACGCAAAC--TTCTCAACAGGCCGTACCAATATCCGCAGCTGGTCTCCA
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 TYPESET * saved = unord: 1 - 663 ; 
 WTSET * saved = 10: 1 - 22 25 - 29 32 - 35 41 - 43 48 49 55 - 57 68 - 81 88 93 - 97 103 - 105 115 - 118 126 - 130 139 - 142 147 148 154 - 158 164 - 181 185 - 191 195 - 198 211 - 215 230 - 234 239 - 246 254 - 261 269 - 273 279 280 292 293 298 - 307 312 - 315 318 - 320 326 - 333 350 - 374 380 - 413 424 - 427 433 - 438 447 - 450 454 455 473 - 476 483 - 490 496 - 499 508 - 511 515 - 519 523 - 526 535 - 538 544 - 548 557 - 561 589 - 598 607 - 626 635 639 643 - 647 650 - 655 658 663 , 8: 23 24 30 31 36 - 40 44 - 47 50 - 54 58 - 67 82 - 87 89 - 92 98 - 102 106 - 114 119 - 125 131 - 138 143 - 146 149 - 153 159 - 163 182 - 184 192 - 194 199 - 210 216 - 229 235 - 238 247 - 253 262 - 268 274 - 278 281 - 291 294 - 297 308 - 311 316 317 321 - 325 334 - 349 375 - 379 414 - 423 428 - 432 439 - 446 451 - 453 456 - 472 477 - 482 491 - 495 500 - 507 512 - 514 520 - 522 527 - 534 539 - 543 549 - 556 562 - 588 599 - 606 627 - 634 636 - 638 640 - 642 648 649 656 657 659 - 662 ; 
 EXSET * saved = 1 - 18 41 - 43 61 - 90 104 - 106 121 - 141 166 - 170 198 - 215 221 224 231 - 234 346 358 - 374 380 - 413 435 - 439 488 499 537 - 539 563 573 611 612 622 - 625 644 ; 
 END;