NEXUS
[File created by TreeBASE:  7/26/07  20:59:28]
[Matrix accession#: M1018]

BEGIN TAXA;
	TITLE M1018;
	DIMENSIONS  NTAX=44;
	TAXLABELS
		Alternaria_infectoria_Y17067	Alternaria_infectoria_Y17066	Alternaria_infectoria_AF081456	Alternaria_panax_D38767	'Alternaria cheiranthi 29/346'	'Alternaria dianthi 26/343'	Alternaria_dianthi_D38766	'Alternaria brassicicola 40/177'	Alternaria_brassicicola_AF20196	Alternaria_brassicicola_U05198	Alternaria_raphani_U05200	'Alternaria radicina 20/338'	'Alternaria radicina 19/336'	'Alternaria radicina 9/320'	Alternaria_radicina_AF229473	'Alternaria radicina 21/339'	Alternaria_brassicae_U05253	'Alternaria citri 25/342'	Alternaria_alternata_D38765	Alternaria_alternata_U05195	Alternaria_alternata_AF071346	'Alternaria alternata 36/351'	Alternaria_alternata_D38763	'Alternaria alternata 18/335'	'Alternaria alternata 2/102'	Alternaria_lini_Y17071	'Alternaria alternata  39/355'	'Alternaria longipes 28/345'	Alternaria_alternata_D38764	Alternaria_solani_U80204	'Alternaria solani 30/347'	Alternaria_linicola_Y17086	Alternaria_solani_D38772	Alternaria_solani_Y17069	Alternaria_solani_Y17070	'Alternaria porri 27/344'	Alternaria_porri_AB026159	Alternaria_dauci_D38768	'Alternaria dauci 22/337'	'Alternaria dauci 11/104'	Alternaria_porri_D38770	Alternaria_bataticola_D38769	'Alternaria bataticola 31/348'	Alternaria_sesami_D38771
	;
END;

BEGIN CHARACTERS;
	TITLE M1018;
	DIMENSIONS NCHAR=172;
	FORMAT DATATYPE = DNA MISSING = . GAP = -  ;
	MATRIX
		Alternaria_infectoria_Y17067           GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTT-GTCTCCAGTT-CGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTTTGCCAGCC--AAGGT-C-AGCGTCCAGCAAGCCTTTTTTT---CAACCTT
		Alternaria_infectoria_Y17066           GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTT-GTCTCCAGTT-CGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTTCGCCAGCC--AAGGT-C-AGCGTCCAGCAAGCCTTTTTTT---CAACCTT
		Alternaria_infectoria_AF081456         GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTT-GTCTCCAGTT-CGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTTCGCCAGCC--AAGGT-C-AGCGTCCAGCAAGCCTTTTTTTT--CAACCTT
		Alternaria_panax_D38767                GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGTTC-GCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCGT-CCACCAAGCCTTTTTTT--CAACTT-
		'Alternaria cheiranthi 29/346'         GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTC-GCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCAT-CCACAAAGCCT-TTTTT--CAACTT-
		'Alternaria dianthi 26/343'            GTACCCTCAAGCTCTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTTCGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTGCCAGCC--AAGGT-C-AGCAATCCACAAAGCCTTTTTT---CAACTT-
		Alternaria_dianthi_D38766              GTACCCTCAAGCTCTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTTCGCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCAATCCACAAAGCCTTTTTT---CAACTT-
		'Alternaria brassicicola 40/177'       GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTT-GCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCATGCCATAAAGCCT-TTTTT--CAACTT-
		Alternaria_brassicicola_AF20196        GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTT-GCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCAT-CCATAAAGCCT-TTTTT--CAACTTT
		Alternaria_brassicicola_U05198         GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTT-GCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCAT-CCATAAAGCCT-TTTTT--CAACTT-
		Alternaria_raphani_U05200              GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTT-GCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCA--AAGGT-C-AGCAT-CCACAAAGCCT-TTTTT--CAACTT-
		'Alternaria radicina 20/338'           GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTT-GCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCAT-CCACAAAGCCTCTTTTTT-CAACTT-
		'Alternaria radicina 19/336'           GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTT-GCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCAT-CCACAAAGCCTCTTTTTT-CAACTT-
		'Alternaria radicina 9/320'            GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTT-GCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCAT-CCACAAAGCCTCTTTTTT-CAACTT-
		Alternaria_radicina_AF229473           GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTT-GCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCAT-CCACAAAGCCTCTTTTTT-CAACTT-
		'Alternaria radicina 21/339'           GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCCAGTTT-GCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCC--AAGGT-C-AGCAT-CCACAAAGCCTCTTTTTT-CAACTT-
		Alternaria_brassicae_U05253            GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGTTT-GCTGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCA--AAGGT-C-AGTAT-CCACAAAGCCTTTTTTT--CAACTT-
		'Alternaria citri 25/342'              GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGTTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTACCAGCC--AAGGT-C-AGCAT-CCATCAAGCCTTTTTTT--CAACTT-
		Alternaria_alternata_D38765            GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTTTTT-CAACTT-
		Alternaria_alternata_U05195            GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTTTT--CAACTT-
		Alternaria_alternata_AF071346          GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTTTT--CAACTT-
		'Alternaria alternata 36/351'          GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTTTT--CAACTT-
		Alternaria_alternata_D38763            GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTTTT--CAACTT-
		'Alternaria alternata 18/335'          GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTTTT--CAACTT-
		'Alternaria alternata 2/102'           GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTTTT--CAACTT-
		Alternaria_lini_Y17071                 GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTTT---CAACTT-
		'Alternaria alternata  39/355'         GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTTT---CAACTT-
		'Alternaria longipes 28/345'           GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTNTC--CAACTT-
		Alternaria_alternata_D38764            GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCT--T-GTCTCTAGCTTTGCTGG-AGACTCGCCTTAAAGTAATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCACTCTCTATCAGCA--AAGGT-CTAGCAT-CCATTAAGCCTTTTTT---CAACTT-
		Alternaria_solani_U80204               GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGT--CCTC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCACCAAGCCTTTTTTTT-CAACTT-
		'Alternaria solani 30/347'             GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCCCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCACCAAGCCTTTTTTTTTCAACTT-
		Alternaria_linicola_Y17086             GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCCCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCACCAAGCCTTTTTTTT-CAACTT-
		Alternaria_solani_D38772               GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCCCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCACCAAGCCTTTTTTTT-CAACTT-
		Alternaria_solani_Y17069               GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCCCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCACCAAGCCTTTTTTTTTCAACTT-
		Alternaria_solani_Y17070               GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCCCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCACCAAGCCTTTTTTTT-CAACTT-
		'Alternaria porri 27/344'              GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCTCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-NTAGCAT-CCACCNAGCCTTTTTTTT-CAACTT-
		Alternaria_porri_AB026159              GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCTCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCACCAAGCCTTTTTTT--CAACTT-
		Alternaria_dauci_D38768                GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCTCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCAACAAGCCTTTTTTT--CAACTT-
		'Alternaria dauci 22/337'              GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCCCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGNCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAGGTCGCGCTCTCTTCCAGCCCCAAGGTGCTAGCAT-CCAACAAGCCTTTTTTTT-CAACTT-
		'Alternaria dauci 11/104'              GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCCCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCAACAAGCCTTTTTTTT-CAACTT-
		Alternaria_porri_D38770                GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTCCCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCAACAAGCCTTTTTTT--CAACTT-
		Alternaria_bataticola_D38769           GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTTCCC--TTGCGGG-AGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCAACAAGCCTTTTTTT--CAACTT-
		'Alternaria bataticola 31/348'         GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCTTCCC--TTGCGGN-AGACTCGCCTTAAAGTCATTNNCANCCGGCCNACTGGTTTCGGAGCGCAGCACAAGTCGCNGCTCTNTTCCAGCCCCAAGGT-CNAGCATACCANCNAGCCTTTTTTT--CAACTT-
		Alternaria_sesami_D38771               GTACCCTCAAGCTTTGCTTGGTGTTGGGCGTCTTTTTGTCCCCCCGCTTGCGGGGAGACTCGCCTTAAAGTCATTGGCAGCCGGCCTACTGGTTTCGGAGCGCAGCACAAG-TCGCGCTCTCTTCCAGCCCCAAGGT-CTAGCAT-CCAACAAGCCTTTTTTT--CAACTT-
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 172 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;