#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2026; 14:59 GMT TreeBASE (cc) 1994-2008 Study reference: Bonito G.M. 2010. A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal. Molecular Ecology, 19(22): 4994-5008. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13538] [ The following blocks are input data for analysis step 10282 ] BEGIN TAXA; TITLE TaxaForAnalysisStep10282; DIMENSIONS NTAX=52; TAXLABELS Tuber_GB298_Italy Tuber_JT19301_Quercus_Mexico Tuber_JT22713_Corylus_avellana_Washington Tuber_JT32421_Mexico Tuber_JT32470_Mexico_3 Tuber_JT7347_California Tuber_anniae_JT13209_Washington_Holotype Tuber_anniae_JT22986_Washington_4 Tuber_asa_M1828_Italy Tuber_borchii_31_Italy_4 Tuber_californicum_JT28058_California_5 Tuber_cf_borchii_China Tuber_dfmo0698_North_Carolina Tuber_dryophilum_38_Italy_8 Tuber_latisporum_DQ898185_China_3 Tuber_liui_DQ898182_China Tuber_menseri_JT11661_Oregon_18 Tuber_multimaculatum_A200_Spain_Paratype Tuber_pacificum_EU837241_Oregon_3 Tuber_puberulum_AJ969625_Hungary_4 Tuber_separans_JT7697_Oregon_7 Tuber_shearii_JT9933_Oregon Tuber_sp._anamorph_Austria_7_AY212884 Tuber_sp._ex._Abies_homolepis_Japan_2_AB218133 Tuber_sp._ex._California_2_DQ822837 Tuber_sp._ex._EM_California_AY702816 Tuber_sp._ex._Epipactis_LG10_New_York Tuber_sp._ex._Epipactis_dunensis_California_11_AY634113 Tuber_sp._ex._Epipactis_helleborine_Japan_AB428787 Tuber_sp._ex._Fagus_sylvatica_Denmark_5_AJ969615 Tuber_sp._ex._Larix_decidua_Poland_3_EU931685 Tuber_sp._ex._Larix_decidua_Poland_EU931686 Tuber_sp._ex._Pinus_halepensis_France_AJ410864 Tuber_sp._ex._Pinus_sabiniana_Mexico_3_EU649090 Tuber_sp._ex._Pinus_thunbergii_Japan_AB285533 Tuber_sp._ex._Populus_Quebec_6_EU554690 Tuber_sp._ex._Populus_tremula_Estonia_AJ534705 Tuber_sp._ex._Quercus_Mexico_2_EU563484 Tuber_sp._ex._Quercus_North_Carolina_AY656959 Tuber_sp._ex._Quercus_crispula_Japan_AB218103 Tuber_sp._ex._Quercus_garryana_Oregon_2_FJ348396 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348398 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348402 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348403 Tuber_sp._ex._Quercus_prinus_Maryland_2_FJ008031 Tuber_sp._ex._Salix_alba_Neatherlands_3_AJ920010 Tuber_sp._litter_North_Carolina_2_AY969316 Tuber_sp2_DQ478621_China Tuber_sp3_DQ478624_China Tuber_sp4_DQ478627_China Tuber_sphaerosporum_JT12487_California_2 Tuber_zhongdianense_DQ898186_China ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14943] TITLE Fig2_Puberulum; LINK TAXA = TaxaForAnalysisStep10282; DIMENSIONS NCHAR=767; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Tuber_GB298_Italy ????????????????????????????????????????CATTACA----AATA-TCTGGG-ATGT-T-CTACTG------AA--CTCCCTTG-TAAACACATTCATGTGTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTGGCTA-CTGCTGCCAGCCT---AGTACATAATTGAGACTTCTG-GGTTGA--GGTGTTTGGGGAAGGA---TTCATTATC-AAACTTTTAAACAAA--TTAGTTGTCT--GAGAGGGCCATGTGTCCGAAA-TATTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCATTAAA--AACCGTCT-CACAAAT-AA--TGTGGTGTTGGTAGAAGT-GGG--TAGTACT-GAT----AGTACTTTATCCTACTCCACCGAAATCAATA-GGTCAGA-AATGTGGA-CCATGGTAACAGACTCTCAGAGTG----TTTTAAAAATGCTAAACTAGTT-TTAACCTGGT-TGAAATCTGAGCC-ACTGTG-ACCCCCCTTAAGTCTAAACAAAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAA??????????????????????????????? Tuber_JT19301_Quercus_Mexico ????????????????????????????????????????CATTACA----AATA-CCTGGG-AAGT-T-CAACTG------AA--CTCCCAAG-AAAACACATTGATGTGTAC-CCTTCCATGTTGCTTCCC-TGGACCAGTGGCCA-TTGCTGCCAGCTG---AGTCTATAAATTAGACTTCCA-GGCTGA--GGTGTCCGGGGAAGGA---CTCATCATT-AAACCTTTAAACCAA--TTAGTTGTCT--TAGAGGGCTATTTGCC-CCAA-TATTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAA---AACCATCT-CACATAC-AA--TGTAGCATTGGTAGAAGT-GGG--TAGTACC-AAT----CGTACTTCATCCTACTCTACTGAAATCAATA-GGTCAGA-AAGGTTGG-CCGTGGTAACAGACTCACAAAGTG----TTTTA-AAATACTAAACTAGTC-TAAACCAGGT-TGAAATCTGAGCC-ACTGGA-CCCCCAATTTAGTCCAATGAATA-CATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_JT22713_Corylus_avellana_Washington ?????????????????????????????????????????????????????????????????GT-C-CTATTG------GA--CCCC{CT}{AT}A--C{AT}AACACATCTATGTGTAC-TCTGCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--TGGTTTCCG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACATA--TTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAACCAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCA{CG}CGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCAACT-CACATAT-CA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAATAGATTCCAGGAGTG----TTTTA-AAATGCTATACTAGTC-TTATCCAAGT-CATATTCTGAGCC-ACTGGA-CCCCCCATTTAGTCCAAACAACA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CG????????????????????????????????????? Tuber_JT32421_Mexico ????????????????????????????????????????CATTACAA---AATG-TCTGGG-ATGT-C-CAATTT-------GGACCCCCAAGCAAAATACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---ATCCCTTAAT-GGGGTTTCAG-GGTTGA--GGTGTCTGGGGAAGGG---TCCAATATC-ATACTTTTGAACAAA--TTAGATGTCT--GAGAAGGCCATGTGCC-AAAA--CAAATAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACG-AAC----ACTACTTTGTCTTACTCTACTGAAATGAATA-GGCCAGA-GAAGTGGA-CCATGGTAATAGACTCCAGGAGTG----TTTTA-AAATGCTAAACTAGTC-TTAACCAAGT-CATGTTCTGAGCT-ACTGGA-CCCCCCATTTAGTCCAAAACAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_JT32470_Mexico_3 ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CAATTT------GGA-CCCCCAAGCAAAATACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---ATCCCTTAAT--GGGTTCCAG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-AAACTTTTGAACAAA--TTAGATGTCT--GAGAAGGCCATGTGCC-GTAA--TATATAAACTAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACC-GAC----ACTACTTTGTCTTACTCTACTGAAATTAATA-GGCCAGA-GAAGTGGA-CCATGGTAATAGACTCTAAGAGTG----TTTTA-AAATGCTAAACTAGTC-TTAACCAAGT-CATGTTCTGAGCT-ACTGGA-CCCCCCATATAGTCCAAACCAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAAC????????????? Tuber_JT7347_California ??????????????????????????????????????????TTAC-----AATGTTCTGGG-ACCT-G-CAATTG------GG--TTCCCAAA-CAAACACATTCATGTGTAC-TCTTCCATGTTGCTTCCC-CAGATCTGTGGCCA-CTGCTGCCAGTCC---AGTCCCAGAT--GGGTTTCTG-GGTTGA--GGTATCTGGGGAAGGG---TAAAATAAC-AAACCTTTAAACCTA--TTAGTTGTCT--GAGAAGGCCAGGTGCC-ATAA-CCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCATCT-CACAGAA-AA--TGTGGTATTGGTAGAAGT-GGG--CAGTAAT-AAC----ATTACTTTGTCCTACTCTACCCAAATGAATA-CGCCAGACGAAGTGGA-CCATGGTGACAGACTCTCAGAGTG----TTATTAGAATGCTAAACTAGTC-TAATCCAAGT-CAGGTTCTGAGCG-ACTGGA--CCCCCATTTAGTCCAAATCAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAAC????????????? Tuber_anniae_JT13209_Washington_Holotype AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACA----AATG-TCTGGG-ATGT-C-CAATCG------GG--CCCCCAAG-CAAACACATCCATGTGTAC-ACTCCCATGTTGCTTTCC-CAGATCAGTGGCCA-CTGCTGCCAGCCC---AACCCCTTGATTGGGGTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATAAC-AAACCTTTGAACCAA--TTAGTTGTCT--GAGTAGGCCACCTGCC-GCAA-TCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GAA--CGGTACT-TAC----ATTACCTTGTCTCACTCTGCTGAAATGAATT-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTG----TTTTT-CAATGCTAAACTAGTCTTTACCCAAGT-CAAGTTCTGAGCT-ACCGGA-CCCCCCATTAAGTCCAAAACAGA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT??????????????????????????????????????????? Tuber_anniae_JT22986_Washington_4 ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATCG------GG--CCCCCAAG-CAAACACATCCATGTGTAC-ACTCCCATGTTGCTTTCC-CAGATCAGTGGCCA-CTGCTGCCAGCCC---AACCCCTTGATTGGGGTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATAAC-AAACCATTGAACCAA--TTAGTTGTCT--GAGTAGGCCACCTGCC-GCAA-TCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GAA--CGGTACT-TAC----ATTACCTTGTCTCACTCTGCTGAAATGAATT-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTG----TTTTT-CAATGCTAAACTAGTCTTTACCCAAGT-CAAGTTCTGAGCT-ACCGGA-CCCCCCATTAAGTCCAAAACAGA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_asa_M1828_Italy ?GTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTACA----AATA-TCTGGG-ATGT-T-CAACTG------GA--CTCCCAAG-TAAACACATTCATGTGTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTGGCCA-TTGCCACCAGTCA---AGTCCCTAATTAAGGCTCCTG-GGCTGA--GGTGTCTGGGGAAGGA---CCCATTATC-AAACCTTTAAACAAA--TTAGTTGTCT--GAGACGGCCATGTGCC-GCAA-TCTTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTAGGTATTCCTGAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCATCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTACTGGAT----TGTACTTTATCCTACTCCACCGAAATCAATA-GGTCAGA-AATGTGGA-CCATGGTAACAGACTCTCAGAGTG----TTATAAAAATACTATACTAGTC-TTAACCTGGT-TGGAATCTGAGTC-ACTGGA--CCCCCCTTGAGTCCAAACAAAGAGAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT??????????????????????????????????????????? Tuber_borchii_31_Italy_4 ???????????????????????????????????????TCATTAC{AG}----AATG-TATGGG-ATGC-C-CTATCG------GA--CTCCCAAGCAAAACACATTCCTGTGTAC-TCTCCCTCATT--------------------------------------------------------------------------------------------------AAACTTTTGAACCAA--TTAGTAGTCT--GAGAAGGCCATGTGC{CT}-GTAA--AATTTAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGA--TGGTACT-AAC----ACTACTTTGTCTGACTCTACTGAAATGAATA-GGCCAGA-GAAGTTGA-CCGTGGTAATAGACTCCAGGAGTG----TTTTA-AAATGCTAAATTAGTC-TTCTCCAAGT-CATGTTCTGAGCT-ACCGGA-CCCCCCATTTAGTCCAAACTAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAAC????????????? Tuber_californicum_JT28058_California_5 ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATTT------GG--CTCCTAAG-CAAACACTTCTATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGTCCG--GCCTCTTAAC--GGGTTTCTG-GTCTGA--GATGTCTGGGGAAGG----TCCATTATT-AAACTTTTAAACCAA--TTGCCAGTCT--GAGAAGGCCATGTGCC-GTAA-TCTTTAAAACATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATACCTGTT-CGAGCGTCACTAAA--AACCATCT-CATATAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTATT-AAT----AGTACTTTGTCTTACTCTACTGAAATGCATA-GGCCAGA-AAAGTGGA-CCATGGTAACAGACTCTCAGAGTG----TTTTA-AAATGCTAAATTAGTC-TTACCACAGT-TGATATCTGAGCT-ACCGGA--TCCCCATTTAGTCCAAACCAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_cf_borchii_China ????????????????????????????????????????CATTACTAAACAATG-TGCGGG-ATAT-C-CCACCG------GGGACTCCTTAGCAAAACACATCCATGAGTAC-CCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCTCT--GTCCTCTAATACAGGATCGTG-GGTTGA--GGTGTCTGGGGAAGGG---CCAACTGTCAAAACTTTTGAACCAA--TTTGTTGTCT--GAGAAGGCCATATGCC-GCAATATTTAAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTACT-AAC----AGTGCTTTGTCCCACTCTACCAAAATTAATA-GGCCAGA-AAAGTGAA-CTTGGGTAACAGACTCTCAGAGTG----TTTTA-AAATGCTAAACTAGTC-TTATCCAGGT-TGGAATCTGAGCC-ACTGGA--CCCCCATTTAGTCCAAAACAGA-GAG???????????????????????????????????????????????????????????????????????????????????????????? Tuber_dfmo0698_North_Carolina ????????????????????????????????????????CATTACAA---AATG-TCTGGG-AAGT-C-CATTTG------GA--CCCCCAAGCAAAACACATTCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---ATCCCTTAAT-GGGTCTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCTAATATT-AAACTTTTGAACCAA--CCTATTGTCT--GAGAAGGCCATGTGCC-GTAA--TATATAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTCTCTCACTCTACTGAAATGAATA-GGCCAGA-GAAGTAGA-CCATGGTAATAGACTCCAGGAGTG----TTTTA-AAATGCTAAACTAGTC-TTATCCAAGT-CATGTTCTGAGCT-ACTGGACCCCCCCATTTAGTCCAAACCAAA-GAGGTTG???????????????????????????????????????????????????????????????????????????????????????? Tuber_dryophilum_38_Italy_8 ???????????????????????????????????????TCATTACA----TATG-TCCGGG-ATGT-C-CAATGG------GG--CTCCCAAGCAAAACACATCCATGTGTAC-ACTCCCATGTTGCTTCCC-CAGATCAGTGGCCA-CTGCTGCCAGCCC---TGCCCTTCAT--GGCATTTCG-GGTTGA--GGTGTCTGGGGAAGGG---TCCAATATC-AAACTTTTGAACAAA--TCAGTTGTCT--GAGAAGGCCATCCGCC-GCAAATTTTAAAAATATATTAAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATG{CT}CTGTT-CGAGCGTCACTAA---AACCGCCT-CACATAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTGCT-AAA----AGCACCTTGT{CT}CTACTCTACTGAAATGAATA-GGCCAGA-AAAGTGAA-CCATGGTAGTAGACTCTCAGAGTG----TTTTA-ATATACTAAACTAGTC-TTAGCCAGGT-TGGAATCTGAGTT-CCTGGA--CCCCCATTTAGTCTAAATAAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAAC????????????? Tuber_latisporum_DQ898185_China_3 ???????????????????????????????????????TCATTACC----AATA-TCTAGG-GTCT-C-ATATAG------GA--CTCCTAAT-CAAACACATTCCTGTGTAT-TCTTCCATGTTGCTTTCC-CAAACCAGTAGCCA-CTGCTGCCAGCCG---ATATTCTAAT----------G-GTTTGA--GGTGTTTGGGGAAGGG---CCAGTTATT-AAACCTTTATACCAA--TTAGCTGTCT--GAGAAGGCTATGTGCC-CTAA--TCTTTAAACATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTCAGGGCATGCCTGTT-CGAGCGTCACTAAC--AACCATCT-CACAGAG-AA--TGTGGTATTGGCCTGAGT-GGG--TTGCACT-TGC----AGTGCA-AATCTCACTTGGCTGAAATGGATT-GGCCAGA-CAAGGAGA-CAATGGCAACAGACTCTCAGAGTG----TTTTTGAAATGCTAAACTAGTC-TGTGGCAGGT-TGAACTCTGAGCTAAAAGGA--CTGATATTTAGTGTAAACAAGA-AATGTCGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGGAGGAA-------AA????????????????????? Tuber_liui_DQ898182_China ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATCG------GG--CTCCCAAG-TAAACACATCTATGTGTAC-TCTTCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCT---AGAGCTTTAC--AGGTTATTG-GGTTGA--GGTGTCTGGGGAAGGA---CCCAATATC-AAACTTTTGAACAAA--TTTGTAGTCT--GATAAGGCTATATGCC-GCAA-CCTTTAAAACATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCTTCT-CACAGAA-AA--TGTGGTATTGGTAGAAGT-GGGTGTAGTACA-CAA----AGTGCTTTGTCTTACTCTACTGAAATGAATA-GGCCGGT-AAAGAGGA-CCATGGTAGTAGACTCTAGGAGTG----TTGTA-TAATGCTAAACTAGTC-TTCACCAGGTGTAGATCCTGAGCT-AATGGA-CGCCCCCTTATGTCCAAATCAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATA?????????????????????????????????????????? Tuber_menseri_JT11661_Oregon_18 ???????????????????????????????????????TCATTACA----AATG-ACTGGG-ATGT-C-CTATCG------GA--CCCCCAAG-CAAACACATCTATGTGTAC-TCTGCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CG--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAATAGATTCCAGGAGTG----TTTTA-AAATGCTATACTAGTC-TTATCCAAGT-CATATTCTGAGCC-ACTGGA-CCCCCCATTTAGTCCAAACAACA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAG?????????????????????????????? Tuber_multimaculatum_A200_Spain_Paratype AGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAAA----TATA-TTTGGG-ATAC-CCTTACAG------GT--TCCCTATCCTTTAAACCTCTCTGTGTAC-CAATCCATGTTGCTTTCCTCAGATCAGCAGCCA-CTGCTGCCTGTAT---AGTTCACAAT--GGGCTAATA-TACAGA--GGTATCTGGGGGAGGGTCTTCTTATAACTCATATTGTTAACCAT-----GCAGTCT--GAGTTGGCTGAATACC-ATACATATCTTGAATAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCAGGGCATGCCTGTT-CGAGCGTCACTACA--AACCTCACTCACAACA-AT--TGTGGTAATGGTAGGAGTGGAT--TATTATGACAA----AGTCACCAGTCACACCCTACCGAAATGCATT-GGGCGGA-CTTTTAGG-CTTAGTGAAGAGACTTAGTACATG----TTCAA-AGAATATATAATAGTCTCATGCTAGGT-TAGGTCCTGCCTG-CCTGGA--CCTCCATCTGGTTTATATACTG---GGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAA????????????????????????????????????????? Tuber_pacificum_EU837241_Oregon_3 ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CACTTC------GGACCCCCCAAGCAAAACACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---AGTCCATAAT--CGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACCTTTGAACCAATCTTAGTTGTCT--GAGTAGGCCATCTGCC-GCAA-TCTTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCAT-CACAGTT-AA--TGTGGTATTGGTAGGAGT-GAA--CGGTACT-TGC----CTTACCTTGTCTCACTATACCGAAATGAATA-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTGTGTTTTTTC-TAATGCTATACTAGTCTTTACCCAAGT-CAAGTTCTGAGCT-AGCGGA--CCCCCATTTAGTCCGAAACAGA{GT}AAGGTTGACCTCG{AG}ATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGCCTCA Tuber_puberulum_AJ969625_Hungary_4 ???????????????????????????????????????TCATTACAA---AATGTTATGGG-ATGT-C-CTAACG------GG--CACCCAAG-CAAACACATCCATATT-----------------------------------------------------------------------------------------------------------------AAACTTTTGAAACAA--TTACTAGTCT--GATAAGGCCATATGCT-GTAA-AAATTTAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-TGA--TAGTACT-AAC----ACTACTTTGTCTGACTCTACTGAAATTCATA-GGCCAGA-GAAGTGGA-CTATGGTAATAGACTCCAGGAGTG----TTTTA-AAACGCTAAATTAGTC-TTCTCCAAGT-CATGTTCTGAGCC-ATTGGA-CCCCCCATTTAGTCCAAACAAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAT{AT}AAAGCGGAGGAAGTTCGAATAAAGTCGTACCGCAGGTTC???? Tuber_separans_JT7697_Oregon_7 ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CAATTC------GGACCCCCCAAGCAAAACACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCCC--ATGCCTTAAT--TGGTTCCAG-GGTTGA--GGTGTCTGGGGAAGGG---CCCGATATC-AAACTTTTGAACAAA--TTAGATGTCT--GAGAAGGCCATGTGCC-GTAA--CATGTAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTCAAATAAATA-GGCCAGA-GAAGTGGA-CCATGGTAATAGACTCCAGGAGTG----TTTTA-AAATGCTAAATTAGTC-TTAACCGAGT-CATGTTCTGAGCT-ACTGGA-CCCCCCATTTAGTCCAAATCAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCCGGAGG????????????????????????????????? Tuber_shearii_JT9933_Oregon ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGGCCA-CTGCTGCCAGCTC---ACCCCCTTGACTGGGGCCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-AAACCTTTGAACCAA---TTATTGTCT--GAATAGGCCACCTGCC-GCAA-TCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATC-ATGAAGAACGCA-CGAAATGCGATAAGTAA-TGTGAATTGCA-AATTCAATGAATCATC-AATCTTTGAACGCACATTGCGCCCTTTGGTATTCCT--AGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACA-AT-AA--TGTGGTATTGGTAGAAGT-GAA---CGGACT-TAC----ATTACCTTGTCTCACTCTGCTGAAATAAATA--GCCAGA--AAGTGGACCCATGG-AATTGACTCC-GGAGTG----TTTTT-CAATGCTAAACTAGTCTTTACCCAAT--CAAGTTCTGA-CT-ACCGGA--CCCCCATTAAGTCCAAAACAAA-GTGGTTG???????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._anamorph_Austria_7_AY212884 ???????????????????????????????????????TCATTACAA---AATG-TATGGG-ATGC-C-CTATCG------GG--CTCCTAAGCAAAACACCTTCCTGTGTAC-TCTCTCCCTTT--------------------------------------------------------------------------------------------------AAACTTTTGAACCAA--TTAGTAGTCT--GAGAAGGCCATGTGCC-ATAA--AATTTAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTGACTCTACTGAAATGAATA-GGCCAGG-GAAGTTGA-CCGTGGTAATAGACTCCAGGAGTG----TTTTA-AAACGCTAAATTAGTC-TTCTCCAAGT-CATGTTCTGAGCT-ATCGGA-CCCCCCATTTAGTCCAAACTAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATA?????????????????????????????????????????? Tuber_sp._ex._Abies_homolepis_Japan_2_AB218133 ???????????????????????????????????????TCATTACTAAACAATG-TGCGGG-ATAT-C-CCACCG------GGGACTCCTTAGCAAAACACATCCATGAGTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTAGCCA-CTGCTGCCAGCTCA--GTA{CT}CCTAATGTGGGTTCTTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTGAACCAA--TCAGTCGTCT--GAGAAGGCAATATGCC-GCAA-ACTTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--ACCCACCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-AGG--TAGTATT-CAC----AGTACTTTGTCCTACTCTACAGAAATCAAT{AG}-GGCCAGA-AAAGTG{AG}A-CCATGGTAACAGACTCTCAGAGTG----TTTTA-AAATGCTAAACTAGTC-TCATCCAGGT-TGGAATCTGAGCC-ACTGGA--CCCCCATTTAGTCCAAAACAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAA??????????????????????????????? Tuber_sp._ex._California_2_DQ822837 ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CACTTC------GGACCCCCCAAGCAAGACACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGCGGCCA-CTGCTGCCAACCC---AGTCCATAAT--CGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACCTTTGAATCAATTTTAGTTGTCT--GAGTAGGCCATCCGCC-GCAA-TCTTTAAAATTTATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCTTCCACAGTT-AA--TGTGGTATTGGTAGAAGT-GAA--CGGTACTTGCC----TTACCTTTGTCTCACTATACTGAAATGAATA-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTGTGTTTTTTC-TAATGCTATACTAGTCTTTACCCAGGT-CAAGTTCTGAGCT-ACCGGA--CCCCCATTTAGTCCGAAACAGATAAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGC??????????????????????????????????????????????????? Tuber_sp._ex._EM_California_AY702816 ???????????????????????????????????????TCATTACA----AATG-TCTGGG-GTGT-C-CAATCGCCATGAGGACCCCCCTGTGCAAACACATCCATGTGTACCCGTTCCATGTTGCTTCCC-CAGACCAGCAGCCA-CTGCTGCCAGCCC---ACACCATAAT-CGGTTCCTGA-GGTTGA--GGTGTCTGGGGAAGGG---CTTGATATC-AAACCTTTAAACCAA--TTAGTTGTCT--GAGAAGGCCATCCGCC-GCAA-TCATTAAAATATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACATATATAATTGTGGTATTGGTAGAAGT-GAA--CGGTACT-TGC----ATTACCTTGTCTCACTATACCGAAATGAATA-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCTAGGAGTG----TTTTT-CAATGCTAAACTAGTCTTTGCCCAAGT-CAAGTTCTGAGCC-ACCGGA--CCCTCATTTAGTCCGAGACAGAGAAGGTTGACCTC??????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Epipactis_LG10_New_York ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CAATTT------GGA-CCCCCAAGCAAAACACGTCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCACCTGCTGCCAGTCCT--ATGCCTTAAT--TGGTTTCAG-GGTTGA--GATGTCTGGGGAAGGG---CCCAATATC-AAACTTTTGAACAAA--TTAGATGTCT--GAGAAGGCCATGTGGC-CTAA--CATGTAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTCAAATGAATA-GGCCAGA-GAAGTGGA-CCATGGTAATAGACTCCAGGAGTG----TTTTA-AAATGCTAAATTAGTC-TTAACCGAGT-CATGTTCTGAGCT-ACTGGA-CCCCCCATTTAGTCCAAATCAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGG????????????????????????????????? Tuber_sp._ex._Epipactis_dunensis_California_11_AY634113 ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATCG------GG--CCCCCAAG-CAAACACATCCATGTGTAC-ACTCCCATGTTGCTTCCC-CAGATCAGTGGCCA-CTGCTGCCAGCCC---ACCCCCTCAATTGGGGTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATAAC-AAACCTTTGAACCAA--TTAGTTGTCT--GAGTAGGCCACCCGCC-GCAA-TCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GAA--CGGTACT-TAC----ATTACCTTGTCTCACTCTGCTGAAATGAATA-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTG----TTTTT-CAATGCTAAACTAGTCTTTACCCAAGT-CAAATTCTGAGCT-ACCGGA-CCTCCCATTAAGTCCAAAACAGA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._ex._Epipactis_helleborine_Japan_AB428787 ??????????????????????????????????????????TTACAA---AATG-TTTGGG-ATAC-C-CAACTT------GG--GCCCTAAG---GGCCATTCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGAA-AGTGGCCA-CTGCTGCCAGCTC---AGCCCCGTAATGGGTTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-AAACCTTTAAACCAA-ATTAGTTGTCT--GATAAGGCCATGTGCC-GTAA--CATTTAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCTCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACCCCATCTTACTCTACTGAAATGAATA-GGCCAGA-GAAGTGGA-CTATGGTAATAGACTCCAGAAGTG----TTTGA-AAATGCTAATCTAGTC-TTACCCAAGT-CATGTTCTGAGCT-ACTGGA--CCCCCATTTAGTCCAAACCAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAG???????????????????????????????????????????????????? Tuber_sp._ex._Fagus_sylvatica_Denmark_5_AJ969615 ???????????????????????????????????????TCATTACAA---AATGTTATGGG-ATGT-C-CTAACG------GG--CACCCAAG-CAAACACATCCATATT-----------------------------------------------------------------------------------------------------------------AAACTTTTGAAACAA--TTACTAGTCT--GATAAGGCCATATGCT-GTAA-AAATTTAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-TGA--TAGTACT-AAC----ACTACTTTGTCTGACTCTACTGAAATTCATA-GGCCAGA-GAAGTGGA-CTATGGTAATAGACTCCAGGAGTG----TTTTA-AAACGCTAAATTAGTC-TTCTCCAAGT-CATGTTCTGAGCC-ATTGGA-CCCCCCATTTAGTCCAAACAAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._ex._Larix_decidua_Poland_3_EU931685 ???????????????????????????????????????TCATTACA----TATG-TCCGGG-ATGT-C-CAATGG------GG--CTCCCAAGCAAAACACATCCATGTGTAC-ACTCCCATGTTGCTTCCC-CAGATCAGTGGCCA-CTGCTGCCAGCCC---TGCCCTTCAT--GGCATTTCG-GGTTGA--GGTGTCTGGGGAAGGG---TCCAATATC-AAACTTTTGAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAAT{GT}CGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CG--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAATAGATTCCAGGAGTG----TTTTA-AAATGCTATACTAGTC-TTATCCAAGT-CATATTCTGAGCC-ACTGGA-CCCCCCATTTAGTCCAAACAACA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._ex._Larix_decidua_Poland_EU931686 ??????????????????????????????????????????????????ATATG-TCCGGG-ATGT-C-CAATGG------GG--CCCCCAAG-CAAACACATCTATGTGTAC-TCTGCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACCTA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAAATTTTTAAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGCCT-CACATAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTGCT-AAC----AGCACCTTGTCCTACTCTACTGAAATGAATA-GGCCAGA-AAAGTGAA-CCATGGTAATAGACTCTAAGAGTG----TTTTA-ATATACTAAACTAGTC-TTAGCCAGGT-TGGAATCTGAGTT-CCCGGA---CCCCATTTAG?--AAACAACA-GTG???????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Pinus_halepensis_France_AJ410864 ????????????????????????????????????????????????????????TCTGGGTATGT-T-CCACTG------AA--CTCCCTTG-TAAACACATTCATGTGTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGTCC---AGTTCATAATTATGGCTTCTG-GGTTGA--GGTGTTTGGGGAAGGA---CCCATTATC-AAACTTTTAAACAAA--TTAGTTGTCT-AGAGAGGGCCATGTGTCCGCAA-TCTTTAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCATTAAA--AACCATCT-CACATAT-AC--TGTGGTGTTGGTAGAAGT-GGG--TAGTACT-GAT----AGTACTTTATCCTACTCCACCAAAATCAATA-GGTCAGA-AATGTGGA-CCCTGGTAACAGACTCTCAGAGTG----TTTTAAAAATGCTAAACTAGTC-TTAACCAGGTCGGAATCTTGAGCTAGAGGGA--CCCCCCTTGAGTCCAAACAAACAGTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAA-CATATCAAT??????????????????????????????????????????? Tuber_sp._ex._Pinus_sabiniana_Mexico_3_EU649090 ???????????????????????????????????????TCATTACA----AATA-TCTGGG-ATGTTCGTCATAA----------CTCCCAAG-?AAACACATTGATGTGTAC-CCTTCCATGTTGCTTCCC-CAGA??AGTGGCCA-CTGCTGCCAGCCC---AGTTCATAATTTGGACTTTCG-GGTTGA--GGTGTCTGGGGAAGGA---CTCATTGTT-AAACCTTTAACCAAA--TTAGTTGTCT--GAGAGGGCCATCGGTC-CTAA-TATTTAAAGTATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACAACCT-CACATAT-AA--TGTGGTATTGGTAGAAGT-GGG--TGATACT-GAT----AGTACTTTATCCTACTCTACTGAAATCAATA-GGTCAGA-AAAGTTGA-CCATGGTAACAGACTCTCAGAGTG----TTTTAGAAATACTAAACTAGTC-TTAACCAGGT-TGGAATCTGAGTC-ACTGGA--CCCCCATTTAGTCCAAACAATA-AAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._ex._Pinus_thunbergii_Japan_AB285533 ???????????????????????????????????????TCATTACC----AAAG-TATGGG-AAGT-T-TTACAG------GA--CTCCCAAG-TAAACACATTCCTGTGTGG-TATCCTTTTTTTTTTT---------------------------------------------------------------------------------------------TAAGCTCTATGTCAT--TTTCTTGTCT--GAGAAGGCCATGTGCC-ATAA--CCTTGAAAAATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTAAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAC--AACAATTT-CACAGGGAAA--TGTGGTGTTGGCTGATGT-GTGTCTAGCACTTTGC----TGTGC-TGGTCTCACTCGGCTGAAATGGATA-GGCCAGAGAAGGTACA-ACTTGGCAACAGACTCTCAGAGTA----TTCTT-AAATGCTAAACTAGTCTCGTCAAATGT-TGAAATCTGTGCC-CAAGGA-CCCCCAATACAGTCCGAACTGGA-GATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAA??????????????????????????????? Tuber_sp._ex._Populus_Quebec_6_EU554690 ???????????????????????????????????????TCATTACAA---CATG-TCTGGG-ATGT-C-CACTCG------GG--CTCCCAAGCAAAACACATCCATGTGTAC-TCTCCCATGTTGCTTTCC-CAGACCAGTGGCCA-CTGCTGCCAGCCCATCATCCCTTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-AAACTTTTGAACCAA--CTAGTTGTCT--GAGAAGGCCATGTGCC-GTAA--CATATAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AT--AGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTCTCTCACTCTGCTGAAATGAATA-GGCCAGA-GAAGTGGA-CCATGGTAATAGACTCCAGGAGTA----TTTTA-AAATGCTAAACTAGTC-TTGCCCAAGT-CATGTTCTGAGCT-ACTGGA-CCCCCCATTTAGTCCAAACAAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAGCCGGAGG????????????????????????????????? Tuber_sp._ex._Populus_tremula_Estonia_AJ534705 ???????????????????????????????????????TCATTACA----AATA-TCTGGG-ATGT-C-CAATCG------GG--CCCCCAAG-CAAACACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGATCAGTGGCCA-CTGCTGCCAGCTC---ACCCCCTTGACTGGGGCCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-AAACCTTTGAACCAA--TTAGTTGTCT--GAATAGGCCACCTGCC-GCAA-TCTTTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCA{AG}TGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GAA--CGGTACT-TAC----ATTACCTTGTCTCACTCTGCTGAAATAAATA-GGCCAGA-GAAGTGGACCCATGGTAATTGACTCCAGGAGTG----TTTTT-CAATGCTAAACTAGTCTTTACCCAAGT-CAAGTTCTGAGCT-ACCGGA--CCCCCATTAAGTCCAAAACAAA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGG???????????????????????????????????? Tuber_sp._ex._Quercus_Mexico_2_EU563484 ???????????????????????????????????????TCATTACAA---AATG-TCTGGG-ATGT-C-CAATTT-------GGACCCCCAAGCAAAATACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---TTCCCTCAAT--GGGTTCCAG-GGTTGA--GGTGTCTGGGGAAGGG---CCCAATATC-{AC}AACTTTT{AG}AACAAA--TTAGATGTCT--GAGAAGGCCATGTGCC-GTAA--CATATAAACTTGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCCCCT-CACACAT-AA--TGTGGTATTGGTAGAAGT-GGA--T{AG}GTAC{AG}-AA{CT}----ACTACTTTGTCTTACTCTACTGAAATGTATA-GGCCAGA-GAAGCGGA-CCATGGTAATAGACTCCAGGAGTG----TTTT{AG}-AAATGCTAAACTAGTC-TTAACCAAGT-{CT}ATGTTCTGAGCT-ACTGGA-CCCCCCATTTAGTCCAAATCAAA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._ex._Quercus_North_Carolina_AY656959 ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATCG------GG--CTCCCAAG-CAAACACATCTCTGTGTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTACCAGTCC---AGTCCTTAGC--GGGTTCCTC-GATTGA--GGTGTCTGGGGAAGGA---CCCAATATT-AAACTTTCCAATCAA--TTAGTTGTCT--GAGAAGGCCATGTGCC-GCAA-TC{CT}TTAAAACATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCATCT-CACAGCT-CT--TGTGGTATTGGTAGAAGT-GGG--TCGTACT-AAC----AGTACGCTTTCCTACTCTACTGAAATAAATA-GGCCAGA-GAAGTGGA-TCATGGTAACAGACTCTAAGAGTG----TTTTC-AAATGCTAAACTAGTC-TTACCCAGGT-CA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_crispula_Japan_AB218103 ????????????????????????????????????????TCTTACC----AATG-TATGGG-ATGT-T-CTACAT------GA--CTCCCAG--TAAACACATTCCTGTGTGT-TATCCTCTTTTTTTT----------------------------------------------------------------------------------------------AAAGCTCTATGCCAT--TTCCTTGTCT--GAGAAGGCCATGTGCC-ATAA--CCTTGAAAAATGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAC--AACAATTT-CACAGGGAAA--TGTGGTGTTGGCCGATGT-GTGTCTAGCACTTTGC----TGTGC-TGGTCTCACTCGGCTGAAATGGATA-GGCCAGAGAAGGTACA-ACTTGGCAATAGACTCTCAGAGTA----TTCAC-AAATGCTAAACTAGTCTTGTCACATGT-TGAAATCTGTGTC-CAAGGA-CCCCCCATTCAGTCCGAACTGGA-GATGTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAA??????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_2_FJ348396 ???????????????????????????????????????????????????CGGG-TCTGGT-ATGT-C-?TAGGA------GA?GCCCTGGCG----TTTTTTCTATGTGTAC-TCTGCCATGTTGCTTCCC-C?GACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTC{AT}ATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CG--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATAGGGCCAGA-AAAGTGGACCCATGGTAATAGATTCCAGGAGTG----TTTTA-AAATGCTATACTAGTC-TTATCCAAGT-CATATTCTGAGCC-ACTGGA-CCCCCCATTTAGTCCAAACAACA-GTGGTTGACCTCGGATCAGGTAGGGATACCC???????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_FJ348398 ???????????????????????????????????????TCATTACA----AATG-ACTGGG-ATGT-C-CTATCG------GA--CCCCCAAG-CAAACACATCTATGTGTAC-TGTGGCATGTTACTTCCC-CTGACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTATAGAGGGAAGGG---CTCAATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTATCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGA?ATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCATGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CG--GGGGGTAAGGG-AGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAATAGATTCCAGGAGTG----GTTTA-AAATGCTATAC?AGTC-TTATCCAAGT-CATATTC-GAGCC-ACTGGACCCCCCGCCTCTGCACGCACC??????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_FJ348402 ???????????????????????????????????????TCATTTCA----AATG-ACTGGG-ATGT-CCTTATCG------GA--CCCCCAAG-CAAACACAT?TATGTGTACTTCTGCCATGTTGCTTCCC-CAGA?CAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACACTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CG--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGC{CG}GAAATGAATA-GGCCAGA-AAAG{CG}GGC-CCATGGTAACAGA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_FJ348403 ???????????????????????????????????????TCATTACA----AATG-ACTGGG-ATGT-C-CTATCG------GA--CCCCCAAG-CAAACACATCTATGTGTAC-TCTGGCATGTTGCTTCCC-CAGACCAGTGGCCA-ATGCTGCCAGCCC---AGCCCGTAAT--GGGTTCGTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGTCATGTGCCTGCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCCCTAAA--AACCGACT-CACATAT-CG--GGTGGTAAAGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTCTGTTTTCCTCTG?TGAAATGAATA-GGCCAGA-AAAGTGG?-CCATGGTAATAGATTCCAGGCGTG----GTTCA-AAATGCTACAC?AC?C-GTATCCAAGT-CATATTC-GAGCC-ACTGGCCCGCGCCGCATGGCGCGCACC??????????????????????????????????????????????????????????????????????????????????????????????????? Tuber_sp._ex._Quercus_prinus_Maryland_2_FJ008031 ????????????????????????????????????????CATTACAACAGAAAA-TGCGGG-AGGT-A-CGCCTG------AA--CTCCTTAG-CAAACACATTGATGTCTAC-CCTTCCATGTTGCTTCCC-CAGACCAGTAGCCA-CTGCTGCCAGCCA---AGTCCATAATTTGGTCTTCCG-GGTTGA--GGTATCTGGGGAAGGA---CTTATCATT-AAACCCTTGAACTAA--TCAGTTGTCTGAGAGAGGGCCATCTGCC-CTGA-TATTTAAATTATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCTCCT-CACATATAAA--TGTGGTATTGGTAGAAGTGGGG--TAGTACT-GAT----GGTACTTTATCCTACTCTGCTGAAATCAATA-GGTCAGA-AAAGTGGA-CCGTGGTAACAGACTCTCAGAGTG----TTTTAAAAATACTATACTAGTC-TTAGCCAGGTTGGGAATCTGAGCC-ACCGGA--CCCCCATTTAGTCCAAACAATA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGA??????????????????????????????????????????????????????????? Tuber_sp._ex._Salix_alba_Neatherlands_3_AJ920010 ???????????????????????????????????????TCATTACA----AATG-ACTGGG-ATGT-CCCTATCG-------GA{AC}CCCCCAAGACAAACACATCTATGTGTAC-TCTGCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCC---AGCCCCTAAT--GGGTTCCTG-GGTTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACTTTTCAACCCA--CTAGTCGTCT--GAGAAGGCCATGTGCC-GCAA--TATTTAAACAAGTT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGACT-CACATAT-CA--TGTGGTATTGGTAGAAGT-GGA--TAGTACT-AAC----ACTACTTTGTCTTACTCTGCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAATAGATTCCAGGAGTG----TTTTA-AAATGCTATACTAGTC-TTATCCAAGT-CATATTCTGAGCC-ACTGGA-CCCCCCATTTAGTCCAAACAACA-GTGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGGAAA-------AGAAACCAACAGGGATTGC???? Tuber_sp._litter_North_Carolina_2_AY969316 ?????????????????????????????????????????????????????????????????????????????????????????????????????CATTAACGAGAACCTGCCCTATGGGTAGAATCTCCCACCCGTGTTTA-CTG-TACCTTTGTT----GCTTTGGCA---GG-CCCG-TCTCCA--GACCGCCGGCCCAGGCTG-GCCAGTGCC-TGCCAGAGGATCTAAA-CTCGCTATTT---A-CATGT--TGTCCGAGCAGT--CTATATAATAGTT-AAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCGTCT-CACAGCT-CT--TGTGGTATTGGTAGAAGT-GGG--TCGAACT-AAC----AGTACGCTTTCCTACTCTACTGAAATAAATA-GGCCAGA-GAAGTGGA-TCATGGTAACAGACTCTAAGAGTG----TTTTC-AAATGCTAAACTAGTC-TTACCCAGGT-CATGTTCTGAGCC-ACTGGA--CCCCCATTCAGTACAAAACAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCC???????????????????????????????????????????????????????????????? Tuber_sp2_DQ478621_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGTGAAT-GACGAATTACGTGAATCATCGAATCTTTGAACGCACATGGCGCCCTTTGGCATTCCTTAGGGCATGCCTGTTACGAGCGTCACTAAA--AACCGTCT-CACAGAT-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTACTTAAC----AGTGCTTTTTCCTACTCTCCTGAAATGAATA-GGCCAGA-AAAGTGGA-CCATGGTAACAGACTTTCAGAGTG----TTTTA-AAATGCTAAACTAGTC-TGGCCCAGGT-TGGAATCTGAGCC-ACTGGA--CCCCCATTTAGTCCAAAACAGA-GAGGTCGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGA??????????????????????????????????? Tuber_sp3_DQ478624_China ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTGAATGGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGCATTCCTCAGGGCATGCCTGTT-CGAGCGTCACTAAC--AACCATTT-CACATTT-AA--TGTGGTATTGGCTAATGT-GGG--TAGCACC-TCC----TGTGC-TGGCTCCACTCAGCTGAAATGGATA-GGCCAGA-GAAGCAAA-CCATGGCAACAGACTCACAGAGTA-------TGAGAGTGCTAAACTAGTC-TGTAGCGGGT-AGAACTCTACGCC-ATTGGG--CCCCCAGTCCATCTACATCAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGA??????????????????????????????????? Tuber_sp4_DQ478627_China ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????A-------------------------------------------------------------------TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAC--AACCACCT-CACATGAAAA--TGTGGTATTGGCCGAAGT-GGA--TCGTACT-TGC----ACTGCA-GGTCTCACTCAGCTGAAATCAATG-GGCCAGA-GAAGTGGA-CCATAGCGACAGACTCTCAGAGTG----TTTTTGAAACGCTAAACTAGTC-TCTAGCAGGT-TGAAATCTGAGCCGATTGGA-CCCCCATTTTAGTCCAAATAAGT-GATGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATAAG-CGGAGG????????????????????????????????? Tuber_sphaerosporum_JT12487_California_2 ??????????????????????????????????????????????????????????TGGG-ATCT-C-CAAT{CT}{GT}-------GGGCTCCCAAG-CAAACACATCCATGTGTAC-TCTCCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCCA--GTTCCCTAAT--AGGTTTCTG-GCCTGA--GGTGTCTGGGGAAGGG---CTCAATATC-AAACCTTCAAACTAA--TTAGTTGTCT--GACAAGGCCATGTGCC-GTAA-TCTTTAAAACATATT-AAAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTCGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACC{AT}TCT-CACATAT-AA--TGTGGTATTGGTAGAAGT-GAA--TAGTACT-ACT----AGTGCTTTGTCTTACTCTACTGAAATGAATA-GGCCAGA-AAAGCGGA-CCATGGTAATAGACTCTCAGAGTG----TTTTA-AAATGCTAAATTAGTC-TCGCCATGGT-TGATATCTGAG{CT}C-ATTGGA--CCCCCATTTAGTCCAAAC{CT}AGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCG{CG}TGAACTTAAGCATAT??????????????????????????????????????????????? Tuber_zhongdianense_DQ898186_China ???????????????????????????????????????TCATTACA----AATG-TCTGGG-ATGT-C-CAATCA------GG--CTCCCAAG-TAAACACATCTATGTGTAC-TCTTCCATGTTGCTTCCC-CAGACCAGTGGCCA-CTGCTGCCAGCCT---AGCCCCTCAC--GGGTAATTG-GGCTGA--GGTGTCTGGGGAAGGA---CCCAATATC-AAACTTTTGAACAAA--TTTGTAGTCT--GAGAAGGCTATATGCC-GCAA-TTTTAAAAATATATT-AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAA-TGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTT-CGAGCGTCACTAAA--AACCTTCT-CACAGAA-AA--TGTGGTATTGGTAGAAGT-GGG--TAGTACT-AACAAATAGTACTTTGTCTTACTCTACTGAAATGAATA-GGCCAGT-AAAGCGGA-CCATGGTAGTAGACTCCAGGAGTG----TTGTA-AAATGCTAAACTAGTC-TTCACCAGGTGTAGATCCTGAGCTAAATGGA-CACCCCCTTTAGTCCGAATCAGA-GAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAATA?????????????????????????????????????????? ; END; BEGIN SETS; CHARSET excluded (CHARACTERS = Fig2_Puberulum) = 1-52 62-70 76-86 93-99 162-185 236-244 252-260 275-280 453-456 473-478 508-524 563-566 589-594 627-631 647-650 670-674 685-767; END; [ The following blocks are output data for analysis step 10282 ] BEGIN TREES; TITLE Fig2_Puberulum; LINK TAXA = TaxaForAnalysisStep10282; TREE Fig._2 = [&R] (Tuber_multimaculatum_A200_Spain_Paratype,(((((((((((Tuber_sp._ex._Quercus_crispula_Japan_AB218103,Tuber_sp._ex._Pinus_thunbergii_Japan_AB285533),Tuber_latisporum_DQ898185_China_3),Tuber_sp4_DQ478627_China),Tuber_sp3_DQ478624_China),(((Tuber_sp._ex._Pinus_halepensis_France_AJ410864,Tuber_GB298_Italy),Tuber_asa_M1828_Italy),(Tuber_sp._ex._Pinus_sabiniana_Mexico_3_EU649090,(Tuber_sp._ex._Quercus_prinus_Maryland_2_FJ008031,Tuber_JT19301_Quercus_Mexico)))),(Tuber_californicum_JT28058_California_5,Tuber_sphaerosporum_JT12487_California_2)),Tuber_JT7347_California),((Tuber_sp._ex._Abies_homolepis_Japan_2_AB218133,Tuber_cf_borchii_China),Tuber_sp2_DQ478621_China)),(Tuber_sp._ex._Quercus_North_Carolina_AY656959,Tuber_sp._litter_North_Carolina_2_AY969316)),(((((Tuber_sp._ex._Epipactis_helleborine_Japan_AB428787,((Tuber_sp._ex._Populus_Quebec_6_EU554690,Tuber_dfmo0698_North_Carolina),((Tuber_sp._ex._Quercus_Mexico_2_EU563484,Tuber_JT32421_Mexico,Tuber_JT32470_Mexico_3),(Tuber_sp._ex._Epipactis_LG10_New_York,Tuber_separans_JT7697_Oregon_7)))),((Tuber_sp._ex._Fagus_sylvatica_Denmark_5_AJ969615,Tuber_puberulum_AJ969625_Hungary_4),(Tuber_sp._anamorph_Austria_7_AY212884,Tuber_borchii_31_Italy_4))),(((Tuber_sp._ex._Populus_tremula_Estonia_AJ534705,Tuber_shearii_JT9933_Oregon),(Tuber_sp._ex._Epipactis_dunensis_California_11_AY634113,(Tuber_anniae_JT22986_Washington_4,Tuber_anniae_JT13209_Washington_Holotype))),(Tuber_sp._ex._EM_California_AY702816,(Tuber_sp._ex._California_2_DQ822837,Tuber_pacificum_EU837241_Oregon_3)))),(((Tuber_sp._ex._Salix_alba_Neatherlands_3_AJ920010,(Tuber_sp._ex._Quercus_garryana_Oregon_FJ348398,Tuber_sp._ex._Quercus_garryana_Oregon_FJ348403),Tuber_sp._ex._Quercus_garryana_Oregon_FJ348402,Tuber_JT22713_Corylus_avellana_Washington,Tuber_menseri_JT11661_Oregon_18),Tuber_sp._ex._Quercus_garryana_Oregon_2_FJ348396),Tuber_sp._ex._Larix_decidua_Poland_3_EU931685)),(Tuber_liui_DQ898182_China,Tuber_zhongdianense_DQ898186_China))),Tuber_dryophilum_38_Italy_8),Tuber_sp._ex._Larix_decidua_Poland_EU931686); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58370] END;