#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2026; 10:45 GMT TreeBASE (cc) 1994-2008 Study reference: Bonito G.M. 2010. A global meta-analysis of Tuber ITS rDNA sequences: species diversity, host associations and long-distance dispersal. Molecular Ecology, 19(22): 4994-5008. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S13538] [ The following blocks are input data for analysis step 10284 ] BEGIN TAXA; TITLE TaxaForAnalysisStep10284; DIMENSIONS NTAX=55; TAXLABELS Tuber_JT11325_Quebec Tuber_JT17711_Quercus_Mexico Tuber_JT9559_Oregon Tuber_Missouri_nonumber Tuber_RH493_Iowa Tuber_RH8310775_Iowa Tuber_candidum_AY830856_Oregon_7 Tuber_ferrugineum_AF132506_France Tuber_furfuraceum_FJ176920 Tuber_huidongense_DQ478632_China_2 Tuber_huidongense_DQ478645_China_2 Tuber_liaotongense_DQ478645_China_5 Tuber_luomai_JT17457_Oregon Tuber_lyonii_JT5665_Texas_2 Tuber_malacodermum_32319_Spain Tuber_nitidum_BM105_Spain Tuber_quercicola_AY918957_Oregon Tuber_rufum_AY112894_Italy Tuber_rufum_var_lucidum_AZ2097_Italy Tuber_sp_RH922071_Iowa Tuber_sp._3_Mexico Tuber_sp._China_DQ478675 Tuber_sp._EM_Estonia_AJ893251 Tuber_sp._JT15106_Quebec Tuber_sp._JT1844_Oregon Tuber_sp._TH_Epipactis_HB5_New_York Tuber_sp._ex._Conifer_Oregon_FJ789634 Tuber_sp._ex._Corylus_North_Carolina Tuber_sp._ex._Epipactis_atrorubens_California_2_AY634152 Tuber_sp._ex._Epipactis_helleborine_California_4_AY634169 Tuber_sp._ex._Epipactis_helleborine_California_4_AY634170 Tuber_sp._ex._Epipactis_helleborine_California_AY634153 Tuber_sp._ex._Epipactis_helleborine_Japan_AB428788 Tuber_sp._ex._Oregon_FJ789635 Tuber_sp._ex._Populus_alba_Hungary_3_DQ355253 Tuber_sp._ex._Populus_tremula_Austria_2_EF644166 Tuber_sp._ex._Quercus_California_2_EF559298 Tuber_sp._ex._Quercus_California_2_EF559300 Tuber_sp._ex._Quercus_Missouri_2_EU202705 Tuber_sp._ex._Quercus_Missouri_EU202709 Tuber_sp._ex._Quercus_douglasii_California_DQ974798 Tuber_sp._ex._Quercus_douglasii_California_EF661992 Tuber_sp._ex._Quercus_garryana_Oregon_EU018588 Tuber_sp._ex._Quercus_garryana_Oregon_EU018589 Tuber_sp._ex._Quercus_garryana_Oregon_EU018590 Tuber_sp._ex._Quercus_garryana_Oregon_EU334899 Tuber_sp._ex._Quercus_garryana_Oregon_EU334900 Tuber_sp._ex._Quercus_garryana_Oregon_FJ235159 Tuber_sp._ex._Quercus_garryana_Oregon_FJ348404 Tuber_sp._ex._Salix_caprea_Poland_AY748863 Tuber_sp._ex._angiosperm_Italy_DQ402504 Tuber_sp1_DQ478643_China Tuber_spinoreticulatum_U188_Maryland_isotype Tuber_taiyuanense_DQ478637_China Tuber_texense_JT15162_Texas ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M14944] TITLE Fig4_Rufum; LINK TAXA = TaxaForAnalysisStep10284; DIMENSIONS NCHAR=796; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Tuber_JT11325_Quebec ??????????????TGGGATACCAAAGTGTT--CCCTGATTTTAACCCTCTCTGTGTATCAATCCATGTTGCTT-TCCCAGGTATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCTTCCAGGTTG--CTGGAAAAGG-TCCCATAGAAATCT-ATTGATTAAATTGGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-AAATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-ATA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTG-G-CAGATG----ATGTG-CAC-TGTTCACCCTATCGAAATGT-ATAGGCA-GGATCATG-AACCTCCA-CAC-TGGAC-TTGGTA-AC-TGTTTTGGAGACATAAATT-AG-TTCAT--TGCGTT-GTTC-TGACCTGGCCTCC-AAG-GACCCCC-ATC??????????????????-?????????????????????????????????????????????? Tuber_JT17711_Quercus_Mexico ????????????????GAATACCAAGGTGTT--CCCTGTTCCCAATCCTCCCTGTGTACCAATCCATGTTGCTT-TCCCAGTTGGTTGGTA---TGAGCTGCGGTTCAACTTTGCCTACTT------------AGCCCTGTCACCTTGAGGCATA-----------------------------------------------------------------------------------------TGCTATGCAGGACCG-CTGGGAAAGG-TTCTACTTAAAGCTGATTATAGAATTTGAATGTCT-GAGAT-GGCTTAGT-GCTAT-GTAC--CTTTAAATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCACCCCT-TGGT-ATTCCTTG-GGGTATGCCTGTTCGAGCGTCACTACAAA-CCCCATCATAA-ATA-C--TATGGTG-CTGAT-GGAAGTGAA-CTATA-G-CTATCA----ATGCT-CCG-GGTTCACTCCATTGAAATGC-ATAGGCA-GGACAATC-AACCTCTG-CGG-TGGAC-TTAGTA-AT-TGTCTTAAAAACATAAATC-AG-TCATG--TAGTAG-GTTT-TGGCCTGTCCTCT-TTG-GACCTTC-ATCAAGG---ATGAAC-TCTG-GGCTGACCTCGGATCAG-TAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_JT9559_Oregon ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????CAATCAGCTGTCT-GAGTT-GGCCGAGTGGCCAC-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCTACTCATTA-ATA-T--TATGGTA-CTGAT-GGAAGTGAA-CTCTG-G-CCTCTA----ATATG-CTG-GGATCACCCCGTTGAAATGC-ATAGGCA-GGAAAATC-AACCTTTG-CAA-CTGAC-TTAGTA-AC-TGTTTTCAAAACAAAAACC-AG-TCACT--CGCTAG-GTTC-TAGCCTGGCCTCC-ATG-GACCTCC-ATTCAAG---ATAAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_Missouri_nonumber CATTATATATATCTA-GGATACCAATCAGGT--TCCCTGACCAATTCCCTTCTGTGTACCAATCCATGTTGCTT-TCCCAGATGCCTCATC-----------CGTACCGGTGGGCCTCCTAGTAG--------GGTGTACTCTGTTTGGGTCCCTGATAGGAAGTCTAATATGTT-----------------------------------------------------TCTACAAGGATA----AGTGATGCAGGCCA--CTGGGAAAGG-TCTAATTTAAACAA-AGTAATTGAATCTGTTCTCT-GAGTA-GGCTGAGT-GCCTT-ATTTTTCTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCCTTCATAATTATTTATTATGGTA-TTGAT-GGAAGTGAA-TAATA-G-GTGTTA----ATATA-CTT-ATGTCACTTCATCAAAATAA-ATAGGCA-GGACAATT-GACCCCAG-TGA-TGGAC-TTTGTA-AA-TGTTTTATAGACATAAACC-AG-TCTCT--TGCTAGGGGTG-TATGACTGTCTTC-ATT-GATCTCC-ATCTAAT---ATTGAC-TCTG-GGTTGACCTCGGATCAGGTAGGAA--TACCCGCTGAAC-TTAAGCA Tuber_RH493_Iowa CGTT-----------------------------CCCTGAC{AT}C{AT}{AG}{CT}CCTTC-CTGCGTATCAACCCATGTTGCTT-TCCCAGTTGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTTCAGGCCG--CTGGGAGAGG-TCCCATAGAAATCT-ATTGATCAAATTGGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-AAATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCACCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-CCA-T--TATGGTG-TTGAT-GGAAGTGAT-CTGTA-G-CAACCA----CTGCT-TAC-TGTTCACCCCATCGAAATGC-ATAGGCA-GGATAATG-AACCTCCT-CAC-TGGAC-TTGGTA-AC-TGTTTTCGAGACATAAATT-AG-TCCCT--TGTGGT-GTTC-TGGCCTGGCCTTC-AAA-GACCCCC-ATTCAAG---GCGAAT-ACAG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_RH8310775_Iowa CATTATGCATATCTG-GGATACCGGTAAGGT-TCCCGAATCCATCTCCTCACTGTGTACCAATCCATGTTGCTT-TCCCAGGTTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGGGAGG-TCCAATCCAACACC-GATGATTGAGTCTGTAGTCT-GAGTA-GGCCCAGT-GCCATGAATT--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTACAAA-CCCCCTCATAG-ATATT--TATGGTA-TTGAT-GGAAGTGAA-CTGTGTGTCTATTG----GTGTA-CTC-ATACCACTCCATCGAAATGA-ATAGGCA-GGACAAGT-GGCAACTG-CGA-TGGAC-TTAGTA-AA-TGGTTTTCAGATGTGGACC-AG-TTCTT--TGCTATGTTGT-ACAGCCTGTATCT-ATG-GACTCCC-ATTCAAT---GAGCAC-TTTG-GGTTGACCTCGAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_candidum_AY830856_Oregon_7 CATTACACATATATG-GGACACTAATGTGGT-CCCTTGACTAAAACCCTCTCTGCGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAGTC-AATCCGAGTTGTTAACTTGGAGTTTGATCTAT-----TTTACTGATGGGTTAAGCTTTAATGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGTAGGCCC--CTGGGAAAGG-GTCCAT{CT}GCAAGTG-AATATTTCAATCAGCTGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAACA-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG-TCACT--TGCTAG-GTTC-TAGCCTGGCCTCA-TTA-GACCTCC-ATTCAAG---ATAAAT-ACTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_ferrugineum_AF132506_France CATTATTTGTTTATG-GGACACAAAAGTGTT--CTCCGATACAAACCCTCTCTGTGTACCAATCCATGTTGCTT-TCCCAGGTGGTTGGTT---TCAGTTGATGTCCAATCCTGCATGCTA------------GCTGAGTTAATAT--------------------------------------------------------------------------------------------------CACTAAGTGGGTCC--CTGGGAAAGG-GCCTTACCAATGCA-AACATTTGAATCAGCCGTCT-GAGTT-GGCCCAGT-GCCGT-ATTA--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-ATA-T--TATGGTA-ATGAT-GGAAGTGAA-GTGAG-G-ACAGTA----ATGTG-CCT-CGGTCACCCCATTGAAATGT-ATTGGCA-GGACAATT-AACCTCTG-CAA-TGGAC-TTAGTA-AC-TGTTTTGAAGACATCAATC-AG-TCAAT--TGCGAG-GTTC-TGGCCTGGCCCCG-ATG-GATTTCC-ATCAAAG---ATGAAC-TCTG-GGTTGACCTCGGATCAGGTAA{AG}GA--TCATGGATGAAT-TTA???? Tuber_furfuraceum_FJ176920 ????ATATATACATT-GGACACTATTGTGCT--CCATGATCTAAACTCCCTCTGTGTACCAATCCATGTTGCTT-TCCCAGGTGGCGGGTC-AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGAAAGG-ATCTCTTAAAACCGAATCAATTGAATCAGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATATGGTTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TGTGGTA-TTGAT-GGAAGTGAA-CTGAG-T-CAAACA----ATGTA-CTT-GGGTCACCCCATTGAAATGC-ATAGGCA-GGACAATA-AACCTCTG-CAA-TGAAC-TTAGTA-AC-TGTCTGAAAGACACAAACC-AG-TTTGT--TGTTGG-GTTC-AGACCTGGCTTCC-ATG-GACCTCC-ATCCAAG---ACAAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCC??????????????? Tuber_huidongense_DQ478632_China_2 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATTGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGAG-T-CAAACA----ATGTA-CTTGGGGTCACCCCGTTGAAATGC-ATAGGCA-GGACAATA-AACCTGTA-CAA-TGAAC-TTAGTA-AC-TGTCTGAAAGACACAAACC-AG-TTCCT--TGTTGGGTTAC-AGACCTTGCTTC--ACT-GACCTCC-ATCC?????????????????-?????????????????????????????????????????????? Tuber_huidongense_DQ478645_China_2 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGCA-GAA-TCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGAG-T-CAAACA----ATGTA-CTT-GGGTCACCCCGTTGAAATGC-ATAGGCA-GGACAATA-AACCTCTG-CAA-TGAAC-TTAGTA-AC-TGTCTGAAAGACACAAACC-AG-TTCCT--TGTTTGGGTGC-AGACCTTGCTTCC-ATG-GACCTCC-ATCCAAG---ACGAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_liaotongense_DQ478645_China_5 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-?????????????????????????????????????????????????????????????????????????????????????????????????????????????????CATTGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TATGGTA-TTGAT-GGAAGTGAA-CGGAA-C-CAATCT----ATGTG-TTC-AGGTCATCCCATCGAAATGT-ATAAGCA-GGACAATC-AACCTGTG-CAA-TGGAC-TTAGTA-AC-TGTCTTGAAGACATAAACC-AG-TTTGT--TGCTTG-GTTT-TGACTTAGCTTCC-ATG-GACCTCC-ATCCAAGATAATAAAC-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_luomai_JT17457_Oregon ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????AAACCAGTCATCT-GAGTA-GGCCTAGT-GCTAT-ATTT-TTGTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA--AATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCACCCCT-TGGT-ATTCCTTG-GGGTATGCCTGTTCGAGCGTCACTATAGA-CCCTCTCATAA-ATA-T--TATGGTA-CTGAT-GGATGTGAA-TCGGG-A-TTGTCA----ATACA-CCT-GTATCACCCCATTGAAATGT-ATGAGCA-GGACAATC-CACCTCTG-TAA-TAGAC-TTAGTA-AA-TGT???????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_lyonii_JT5665_Texas_2 ????????????????????????????GAGGGTCTGAATCCATCTCCTCACTGTGTACCAATCCATGTTGCTT-TCCCAGGTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGAGAGG-TCCAACCCAACACC-AATAATTGAGTCCGCAGTCT-GAGTA-GGCCTAGC-GCCTTGAATG--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCTCT-TGGT-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCATAG-TTA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTG-T-CTATT{GT}----ATGTA-CTC-AC{AG}CCACTCCATTGAAATGA-ATAGGCA-GGACAAGT-GACAACTG-CAA-TGGAC-TTAGTA-AA-TGGTTTTCAGACATGGACC-AG-TTCTT--TGCTATGTTGT-ACAGCCTGTATCC-ATG-GACTCCC-ATCCAGT---AAGCAC-CTTG-GGTTGACCTCGAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_malacodermum_32319_Spain CATTATGCATCTAGG-GGATACCAATGAGTTCCCTGAAGTGAAAGCCCTCCATGTGTACCAATCCATGTTGCTT-TCCCAGGTTGTTGGTC--ACGGGTCGCCAGCCATCGCTCAATGGTGTCCACTGGTTGAGTGCATCCGGAGGCTAAAGTGCTCCGTAGAATCCGTTCCTTCAGTTACTCGGTTGAAAAACGCCGCCATTTAGTCCGTAGGG-----------------------------ATCCCCGTGAGCAC--CTGGGAGAGG-GCCTATCCAAATCGATTATTTTTGATCAGCTGTCT-GAGTT-GGCCAAGT-GCCAT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCCTTCATAA-----TATTATGGTA-TTGAT-GGATGTGAA-CTGTG-G-CAACCA----GTGTC-CCT-GGATCACCCTGTCGAAATGT-ATGGGCA-GGACAATC-AACCTCTA-CAA-TAGAC-TTAGTA-AC-TGTTCCAAAGACAAGAGAC-AG-TCCCT--TGCAGG-GTTG-TGGCCTCGCCTCC-ATG-GACCTCC-ATCCAAG---AAGAAC-TCTG-GGTTGACCTCGAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_nitidum_BM105_Spain ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????GAATCAGCAGTCT-GAGTT-GGCCCAGT-GCCGT-CTTC--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCCCTCATAT-GTA-T--TATGGTA-TTGAT-GGATGTGAA-CTCAG-G-CCTAGA----ATGCA-CCT-CAGTCACCCCGTCGAAATGC-ATAGGCA-GGACAATA-AACCTCCG-CAA-GGGAC-TTAGTA-AA-TGTTATGAAGACATAAACC-AG-TCCGT--CGCTCG-GTTC-TGTTCTGGCCTCC-ACG-GACCTCC-ATCCGAC---ATGAAA-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TT????? Tuber_quercicola_AY918957_Oregon CATTATGTATCTATG-GGACTTCAAAGTGGT--CCCTGATTCAAACCCTCTCTGTGTACCAATCCATGTTGCTT-TCCTAGGTGGTTGGTC---CGAGCTGCCGCCCAACATTGCCTGCTA------------GTTAAGTCAATCTGAGTTGCTATTATTGAAACTTGGAACCTGACACTTTCCCGATAGTGTGAGCTTTAATGAGTCAGCAAGCTCAATTGTTA---TCCGTCGGGATG----AGCTATTCAGGTCC--CTGGGAAAGG-GCCTATCCAAAGTT-AACACTTCAATCAGCTGTCT-GAGTT-GGCCGAGT-GCCAT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TATGGTA-CTGAT-GGAAGTGAA-CCCTG-G-GCACTA----ATATG-CCT-AGATCATTCCATTGAAATGC-ATAGGCG-GGACGATC-AACCTTCG-CAA-CTGAC-TTAGTA-AC-TGTTTTCAAGACAAAAACC-AG-TCACT--TGCACG-GTTC-CAGCCCAGCCTCC-ATG-GACCTCGCATCCAAG---ATGAA--TCTG-GGTGACTC---GATCAGGTAGATA--CACGGAC????????????? Tuber_rufum_AY112894_Italy ?????????????????????????????????????????????????????????????????????TGCTT-TCCCAGGTGGTTGGTT---TTACTAGTTGTTTAACCCTTCCTGCTA------------GTTGAATTTACTT--------------------------------------------------------------------------------------------------TACTATGTAGGCTC--CTGGGAGAGG-GTCTGTTCAAAGCA-AACTATTGAATCAGCAGTCT-GAGTT-GGCCCAGT-GCCATATTTT--TTTGA-ATGAATT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCTCT-TGGT-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTGCAAA-CCTACTCATAA-CTA-T--TATGGTA-ATGGT-GGATGTGAA-GAGAG-G-CTACTA----ATATG-TCT-CAGTCACCCCATTGAAATAT-ATAGGCA-GGACAATT-ATCTTTAG-CAA-AGAAC-TTAGTA-AC-TGTTTTGAAGACATATATT-AG-TTTCT--TGCTAG-GACT-TGGACTGACTTCT-ATG-GATCTCC-ATTAAAG---ACAAAC-TTTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_rufum_var_lucidum_AZ2097_Italy CATTATACATACAGG-GGACGTTTTAGCGTT-C-CCGGACCCAAACCCTCTCTGTGTACAAATCCATGTTGCTT-TCCCAGGTGGTTGGTG---GCAGCAGCTGTCCAACTCTGCCTG-----------------------------------------------------------------------------------------------------TATAGCTTACCTCTTTGGATG----AACTATGCAGGCCC--CTGGGAGAGG-GCCTATCCTGAGCC-AATTATTGAATTAGCTGTCT-GAGTT-GGCCCAGT-GCCAT-TTTC--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-ATA-T--TATGGTT-GTGAT-GGAAGTGAA-CTGAG-G-CTATCA----GTATG-CCT-GGGTCACCCTGTCGAAATTC-ATAGGCA-GGACAATT-AACCACTG-CAA-TGGAC-TTAGTA-AC-TGTTTCAAAGACATCAACC-AG-TCCCT--TGCTAG-GTGC-TGGCCTGGCCTCC-ATG-GACCTCC-ATCCAAG---ATAAAC-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp_RH922071_Iowa CATTATGCATAAATG-GGATACCAAAGCGTT--CCCTGACTCAAACCCTTCCTGCGTATCAACCCATGTTGCTT-TCCCAGTTGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCTTTCAGGCCG--CTGGGAGAGG-TCCCATAGAAATCT-ATTGATCAAATTGGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-AAATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCACCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-CCA-T--TATGGTG-TTGAT-GGAAGTGAT-CTGTA-G-CAACCA----CTGCT-TAC-TGTTCACCCCATCGAAATGC-ATAGGCA-GGATAATG-AACCTCCT-CAC-TGGAC-TTGGTA-AC-TGTTTTCGAGACATAAATT-AG-TCCCT--TGTGGT-GTTC-TGGCCTGGCCTTC-AAA-GACCCCC-ATTCAAG---GCGAAT-ACAG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._3_Mexico ?????????TATCTG-GGATACCAATAAGGT-CCCTGAATCCATCTCCTCACTGTGTACCAATCCATGTTGCTT-TCCCAGGTCTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGGAAGG-TCCCAACCCAACACTGATAATTGAGTGTGTAGTCT-GAGTA-GGCCCAGT-GCCTTGAAAT--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCATAG-ATA-C--TATGGTA-TTGAT-GGAAGTGAA-CTGTA-T-CCATTG----GTGTA-CTC-ACACCACTCCATCGAAATGA-ATAGGCA-GGACAAGT-GGCAACTG-CAA-TCGAC-TTAGTA-AA-TGGTTTTCAGACATGGACC-AG-TCCTT--TGCTACGTTGC-ACAGCCTGTATCC-ATG-GACTCCC-ATCCAGT---GAGCAC-TTTG-GGTT?????????????????????????????????????????? Tuber_sp._China_DQ478675 CATTATACATTCATG-GGACACAATAGTGTT--CCCTGAT------------------CCAATCCATGTTGCTTTCCCAGGGTGTTTGGTCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGAAAGT-GTCCTTTCAAAACG-AATTATTGAATCAGCTGTCT-GAGTT-GGCCCAGT-GCCTT-ATTC--TTTAA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCA??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-???????????????????????????????????????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._EM_Estonia_AJ893251 ?????AATATATCTG-GGACACCCAGGAGGT--TCCTGACCCTATCTCTCTCTGTGTACCAATCCATGTTGCTT-TCCCAGGTATCCAGTC----------------TGTGCTGCCTGCAATTGATTCATACTGCTATGTCAACTCTTGCACTCATAGGTAGGGTGAGCTCAATGGGCCTCTGTCAG---------------------AGTGAGCTCAATGGGCC---CCTATCTGGGAG----AATTATGCAGGACCTCCTGGGAAAGG-TTTAAGCAAAAGCT-AATAATTGAACAGCCAGTCT-GAGCA-GGCCTAGG-GCCTC-ATGA--TTTAA-ACATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCACGT-ATA-C--CGTGGTA-TTGAT-GGTAGTGGG-TTGCA-G-TTGCCG----ACACG-ACT-GCTCCACTCTGTTGAAATAT-ATAGGCA-GAACAGTT-GGCCTTAG-TAA-CAGAC-TTAGTA-AA-TGTTGTTAGCACATAAACC-AG-TCTCT--TACTAG-GTCA-GGTCCTGCCTTCC--TG-GACCCCC-ATCTAAA---ATGAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._JT15106_Quebec ?????TTAATATATC-TGGGAACCAAGGAGGTTCCCTGACCCAATCTCTCTCTGTGTACCAATCCATGTTGCTT-TCCCAGGTATCTAGTC----------------CATGCTGCCTGCAATTGATTCATAATGCTATGTCAACTCTTGTGCTCCCAGGTAGGGTGAGCTCAATGGGCCTCTGTCAGAGTGAGCTCAATGGGCC------------------------CCTATCTGGGAG----AATTATGCAGGACGGCCTGGGAAAGG-TCCAAGCAAAAGCA-AATAATTGAACAGCCAGTCT-GAGCA-GGCCTAGG-GCCTC-ATGA--TTTGA-ACATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATC-AATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCACGT-ATA-C--CGTGGT???????????????????????????????????????????????????????????????????????????????????-???????????????????????????????????????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._JT1844_Oregon ????ACAC{AC}TATATG-GGA{CT}ACTAATGTGGT-CCCTTGACTAAAACCCTCTCTGCGTATCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCA--TCAATCCGAGTGGTTAACTTGGAGTTTGATCTAT-----TTTACTGATGGGTTAAGCTTTAATGGGTCAGTGAGCTTAATTTATA---TCTATCTGGATC----AGCTATGTAGGCCC--CTGGGAAAGG-GTCCATTGCAAGTG-AATATTTCAATCCACTGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGTTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAACA-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG-TCACT--TGCTAG-GTTC-TAGCCTGGCCTCC-TTA-GACCTCT-ATTCAAG---ATAAAT-ACTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._TH_Epipactis_HB5_New_York CATTAAATATATCTG-GGACACCAAGGAGGT-TCCCTGACCCAATCTCTCTCTGTGTACCAATCCATGTTGCTT-TCCCAGGTATCTAGTC----------------CGTGCTGCCTGCAATTGATTCATAATGCTATGTCAACTCTTGTGCTCCCAGGTAGGGTGAGCTCAATGGGCCCCTATCTGGGAG-----------------------------------------------------AATTATGCAGGACCGCCTGGGAGAGG-TCCAAGCAAAAGCA-AATAATTGAACAGCCAGTCT-GAGCA-GGCCTAGG-GCCTC-ATGA--TTTGA-ACATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTATAAA-CCCTCTCACGT-ATA-C--CGTGGTA-TTGAT-GGTAGTGGG-TTGCA-G-TTGCCG----ACACG-ACT-GTGCCACTCCGTTAAAACAC-ATAGGCA-GGACAGTT-GACCTTAG-TAA-CAGAC-TTAGTA-AA-TGTTGTTAGCACATAAAAC-AG-TCGCT--TACTAG-GTCA-GGGCCTGCCTTCC--TG-GACCCCC-ATCTAAA---ATGAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Conifer_Oregon_FJ789634 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-???????????????????TGTCAATCAGCTGTCT-GAGTG-GCCCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTCG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGCT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAATG-AACCTCCTGTAGCTTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG--CACT--TGCTAG-GTTC-AAGCCTGGCCTCC-TCA-GACCG????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Corylus_North_Carolina ??????????????????????????????????????GACTTAACCCTCCCTGTGTATCAATCCATGTTGCTT-TCCCAGTTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCTTTTCGGCTC--CTGGGAAAGG-TTCCATATAAATCT-ATTGATCAAATTGGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-AAATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCACCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-CTA-T--TATGGTA-TTGAT-GGAAGTGAT-CTGTA-G-CAACTG------ATG-CTTATGTTCACCCCATCGAAATGC-ATAGGCA-GGATAATG-AACCTCG--CAC-TGGAC-TTGGTA-AC-TGTTTTAGAGACATAAATT--A-TCCCT--TGTT---GTTC-TGGCCTGGCCTTC-AAG-GACCCCC-ATCCAAA---ACGAAT-AGAG-GGTTGACCTCG-ATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Epipactis_atrorubens_California_2_AY634152 CATTATTTGTTTATG-GGACACAAAAGTGTTCTCTCTGA{CT}ACAAACCCTC{CT}CTGTGTACCAATCCATGTTGCTT-TCCCAGGTGGTTGGTT---TCAGT{CT}AATGTCCAATCCTGCATGCTA------------GCTGAGTTAATAT--------------------------------------------------------------------------------------------------{CT}ACTAAGCGGGTCC--CTGGGAAAGG-GCCTTACCAATGCA-AACATTTGAATCAGCCGTCT-GAGTT-GGCCCAGT-GCCGT-ATTA--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGC-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-ATA-T--TATGGT{AG}-ATGAT-GGAAGTGAA-GTGAG-G-ACA{CG}TA----ATGTG-CCT-CGGTCACCCCATTGAAATGT-ATTGGCA-GGACAATT-AACCTCTG-CAA-TGGAC-TTAGTA-AC-TGTTTTGAAGACATCAATC-AG-TCAAT--TGCGAG-GTTC-TGGCCTGGCCC{AC}G-ATG-GAT{CT}TCC-ATCAAAG---ATGAAC-TCTG-GGTTGACCTCGGATCAGG{CT}AGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Epipactis_helleborine_California_4_AY634169 CATTATTCATATATG-GGACATACAAGTGTT--TCCTGACCCAAATCCTCTTTGTGTACTTATCCATGTTGCTT-TCCCAGGTGGTTGGTT---TTACTAGTTGTTTAACCCTTCCTGCTA------------GTTGAGTTAACTT--------------------------------------------------------------------------------------------------TACTATGTAGGCTC--CTGGGAGAGG-GCCTATTTCAAGCA-AACTATTAAATCAGTTGTCT-GAGTT-GGCCTAGT-GTCATATCTT--TTTAA-ATAAATT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCACTCATAA-ATA-T--TATGGTA-ATGGT-GGATGTGAA-AGGAG-G-CTACTA----GTATG-TCT-CAGTCACCCCATTGAAATAC-ATAGGCA-GGACAATT-ATCTTTAG-CAA-AGGAC-TTAGTA-AC-TGTTATGAAAACATATATT-AG-TTTCT--TGCTAG-GATT-TGGACTGACTTCT-ATG-GATCTCC-ATTAAAG---ATAAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Epipactis_helleborine_California_4_AY634170 CATTACACATATATG-GGACACTAATGTGGT-CCCTTGACCAAAACCCTCTCTGCGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAGTC-AACCCGAGTTGTTCACTTGGAGTTTGATCTTT-----TTTACTGATGGGTTAAGCTTTAGTGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGCAGGCCC--CTGGGAAAGG-GTCCATCCCAAGTG-AATATGTCAATCAGCTGTCT-GAGTT-GGCCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GAATCACCCCATCGAAATAC-ATAGGCA-GGACAAC{AG}-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG-TCACT--TGCTAG-GTTC-AAGCCTGGCCTCC-TTA-GACCTCC-ATTCAAG---ATAAAC-ACTG-GGT??????????????????????????????????????????? Tuber_sp._ex._Epipactis_helleborine_California_AY634153 CATTATTCATATATG-GAACACATAAGTGTT--TCCTGACCCAAATCCTCTTTGTGTACTTATCCATGTTGCTT-TCCCAGGTGATTGGTT---TTACTAGTTGTTTAACCCTTCCTGCTG------------GTTGAGTTAACTT--------------------------------------------------------------------------------------------------TACTATGTAGGCTC--CTGGGAGAGG-GCCTATTCAAAGTA-AACTATTAAATCAGTAGTCT-GAGTT-GGCCTAGT-GTCATATCTT--TTTAA-ATAAATT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-ATA-T--TATGGTA-ATGAT-GGATGTGAA-GGGAG-G-CTACTA----ATATG-TCT-CAGTCACCCCATTGAAATAC-ATAGGCA-GGACAATT-ATCTTTAG-CAA-AGGAC-TTAGTA-AC-TGTTTTGAAGACATATATT-AG-TTTCT--TGCTAG-GACT-TGGACTGACTTCT-ATG-GATCTCC-ATTAAAG---ACAAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Epipactis_helleborine_Japan_AB428788 CATTATGTATTCATG-GGATACCAAAGTGTT--CCCTGACACAAACCCTCTCTGCGTATCAATCCATGTTGCTT-TCCCAGGTGCTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCTCCTGGGAGAGG-GCCTATCCATAGCG-AATTATTGAATCAGCTGTCT-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCC-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAC-ATA-TTATATGGTA-TTGAT-GGAAGTGGA-CCGTG-G-TTACTAATA-ATGTA-TCT-GGATCACCCCATTGAAATGT-ATAGGCA-GGACAGTA-AACCTCTG-CAA-TGGAC-TTAGTA-AC-TGTTGTGAAAACATAGACC-AG-TCCTT--TGCCTG-GTTC-CAGCCTGGCCTCC-ACG-GACCTCT-ATCCAAG---ATAAAC-TCTG-GGTTGACCTCGGATCATGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Oregon_FJ789635 -----------------------------------------------------------------------------------------------------------------------------------------------------------------GACTTAGAACCTGAC--ACTTCCCGATAGTGTGAGCTTAGT-GAGTCAGCAAGCTCAATTGTTAT---CTATCAGGATG----AGCTATTCAGGTCC--CTGGGAAAGG-GCCCATCCAAAGTT-AACACTTCAATCAGCTGTCT-GAGTT-GGCCGAGT-GCCAT-ATTC--TTTAAGACAAGTT----AAAACTTT-CAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATCTGCA-GAATTCAGTGAATCATCGAATCTTGGAACG-CACATTGCGCCCCTCTGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCTACTCATTACATA-T--TATGGTAGT-GAA-GGAAGTGAA-CTCTG-G-CCTCTA----ATATGCTGG--GATCACCCCGTTGAAATGC-ATAGGCA-GGAAAATC-AACCTGCGCAAC--CGACCTAGTAT-ACGTGTTTGCAACACA-AAAACCAGCTCACGA-TGATAG-GTTCATAGCCTGGCCTCCATG--GACGGCC-AATTCAA-GATAAATT-CT------------------------------------------------- Tuber_sp._ex._Populus_alba_Hungary_3_DQ355253 CATTATTCATATATG-GAACATATAAGTGTT--TCCTGACCCAAAACCTCTCTGTGTACTGATCCATGTTGCTT-TCCCAGGTGGTTGGTT---TTACTAGTTGTTTAACCCTTCCTGCTA------------GTTGAATTTACTT--------------------------------------------------------------------------------------------------TACTATGTAGGCTC--CTGGGAGAGG-GCCTGTTCAAAGCA-AACTATTGAATCAGCAGTCT-GAGTT-GGCCCAGT-GCCATATTTT--TTTGA-ATGAATT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCTCT-TGGT-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCACTCATAA-CTA-T--TATGGTA-ATGGT-GGATGTGAA-GAGAG-G-CTACTA----ATATG-CCT-CAGTCACCCCATTGAAATAT-ATAGGCA-GGACAATT-ATCTTTAG-CAA-AGGAC-TTAGTA-AC-TGTTTTGAAGACATATATT-AG-TTTCT--TGCTAG-GACT-TGGACTGACTTTT-ATG-GATCTCC-ATTAAAA---ACAAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA---ACCCGCG???????????? Tuber_sp._ex._Populus_tremula_Austria_2_EF644166 CATTAAATATATCTG-GGATACCAAAGTGTT--CCCTGATCTAAACCCTCTCTGCGTACTCATCCATGTTGCTT-TCCCAGGGAATTGGTT---CCTGTAACCATTTAATCCTTCCAGCTA------------GCAGAGTCAACCT--------------------------------------------------------------------------------------------------CACTATGCAGGTCC--CTGGGAAAGG-GCTAATCTAAATTG-AATCATTA{AT}ATCAGCTGTCT-GATCT-GGCCCCGT-GCCGCAAATC--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCACTCATAA-ACA-T--TATGGTA-ATGGT-AGAAGTGAA-GCGAG-G-CTACTA---TGTATG-CCT-TGGTCACTCTGCTGAAATGA-ATAGGCA-GGACAATC-AACCTCTG-CGA-TAGAC-TTATTA-AT-TGTTTTGAAAGCAAAAACC-AG-TCTCT--TGCTCG-GTTC-TGGCCTGGCTCCC-ATG-GACCTCC-ATGAAAG---ATAAA{CT}ATTGG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Quercus_California_2_EF559298 CATTACACATATATG-GGACACTAATGTGGT-CCCTTGACTAAAACCCTCTCTGCGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAG-TCAATCCGAGTTGTTAACTTGGAGTTTGATCTTTTT---TTTACTGATGGGTTAAGCTTTAATGGGTCAGCGAGCTTAATTTATA---TCTATCATGATC----AGCTATGTAGGCCC--CTGGGAAAGG-GTCCATCACAAGTG-AATATTTCAATCAGCTGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC--TTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CATATTGCGCCCTT-TGGT-ATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAACAA--CCAATCACCTTATG----CGTGGTA-TTGGC-AGATGTGAG-TTGAGTA-CAAAGCTTAGCAGTGATACTCTCCCACACTGTTGGAATGA-ATAGGCTAGAAAAGTAGATCATAGC--AA-CAGACTTTCAGA--G-TATTTTGAAATGCTAAATT-AGTTTGAA---GCTGG---TC--AGAATCTAGGCCATTT-GACCCCC-ATTCTGTG---TACAGCAGTAAGGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-T------ Tuber_sp._ex._Quercus_California_2_EF559300 CATTACACATATATG-GGACACTAATGTGGT-CCCTTGACCAAAACCCTCTCTGCGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAG-TCAACCCGAGTTGTTCACTTGGAGTTTGATCTTT-----TTTACTGATGGGTTAAGCTTTAGTGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGCAGGCCC--CTGGGAAAGG-GTCCATCCCAAGTG-AATATGTCAATCAGCTGTCT-GAGTT-GGCCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCTT-TGGT-ATTCCTTA-GGGCATGCCTGTTCGAGCGTCACTAAACT-ATACTTCTCAC-GTC-TGACGTGGTA-TTGGT-AGAAGTG-----GT--G-CAG--A----AATTG--CT----CCACTCCTCTAAAATTG-AAAGGCC-GGAAAATG--ATCTCGGTGAG--AGAC--TTGTAGAG-TGTTATGAAAACCTAAATC-AG-TCTTCA--GCCAG-GTTG--AGTCCGTGCTTC--TG-GACCCCC-ATCCACAGTAACATAT--TAA-AGTT------------------------------------------ Tuber_sp._ex._Quercus_Missouri_2_EU202705 CATTATGCATATCTG-GGATACCAATAAGGT-CCCTGAATCCATCTCCTCACTGTGTACCAATCCATGTTGCTT-TCCCAGGTACTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGGGAGG-TC{CT}AAC{CT}CAACACC-AATAATTGAATCTGTAGTCT-GAGTA-GGCCTAGC-GCCTTGAATC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTC{AG}CATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCTCT-TGGT-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCATAG-TCA-T--TATGGTA-TTGAT-GGAAGTGAC-CTGTG-T-CTATTG----ATGTA-CTC-ACACCACTCCATTGAAATGA-ATAGGCA-GGACAAGT-GACAACTG-CAA-TGGAC-TTTGTA-AA-TGGTTTTCAGACATGAACC-AG-TTCTT--TGCTATGTTGT-ACGGCCTGTATCC-ATG-GACTCCC-ATCCAGT---ATGCAC-TTTG-GGTTGACCTCGAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._Quercus_Missouri_EU202709 CATTATGCATAAATG-GGATACCGAAGCGTT--CCCTGACTCAAACCCTCCCTGTGTATCAACCCATGTTGCTT-TCCCAGTTGCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTTTTCAGGCCG--CTGGGAGAGG-TCCCATAGAAATCT-ATTGATCGAATTGGCTGT-T-GAGTT-GGCCCAGT-GCCAT-ATTC--TTTGA-AAATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGGGAATCAT-GAATCTT??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-???????????????????????????????????????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Quercus_douglasii_California_DQ974798 CATTATACATACATG-GGATACCAATGTGTT--CCCTGACCCATACCACCTCTGTGTACTGTTCCATGTTGCTT-TCCCAGGTGCTCAATC----------------------------------------------------------------------------------------------------------------------CTTGTAGTAGCTCATCGCAAATGACATGTTGCTGCTGCCCGCGAGTGGCTACTGGGAAAGG-TCTTATTTAACGCC-TTCAATTGAATTTGCTGTCT-GAGTT-GGCCTGGT-GCCAT-GAAC--TTTGA-ACAAGTTAAAAAAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAAACCCACTCATAA-ATA-A--TATGGTA-CTGAT-GGAAGTGAA-CGGTA-G-CCACTC----TTGCG-CTC-AGGTCACTCTGTTGAAATGC-ATAGGCA-GGCTAATC-AACCACTG-CAA-CTGAC-TTAGTA-AC-TGTTTTAAAGACATAAACC-AG-TCACT--TGTTAG-GTTC-CAGCCTGGCCATC-ATG-GACCTCC-CTCCAAG---TCGAAC-TCGG-G--TGACC?????????????????????????????????????? Tuber_sp._ex._Quercus_douglasii_California_EF661992 CATTACACATATATATGGACACTAATGTGGT-CCCTTGACTAAAACCCTCTCTGCGTACCAATCTATGTTGCTTCCTCTAGATGACCAAGA----CAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAGTC-AATCCGAGTTGTTAACTTGGAGTTTGATCTTT---TTTTTACTTCCTAAATAAGCTTGGAAGGGACTGCGATTTTTCCTCAAA---GCCACCAAGAGC----AGCTATGTAGGCCT--CTGGGAAAGG-GTCCATCACAAGTG-AATATTTCAATCAGCTGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC--TTTAA-ACAAGTT----AAAACTTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GTGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTATTTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCT-GGACAACA-AACTTCTG-TAG-TTGACTTTTTTA-AC-TGTTTTCAAGACACAAAACCAG-TCACTT-TGCTAG-GTTC-TAGCCTGGCCTCCTTTA-GACCTCC-ATTTCAAAGATAAAATACTGG-GGTTGACCTCGGATCAGTTAGGGGATACCCCGCTGAACTTTATGCA Tuber_sp._ex._Quercus_garryana_Oregon_EU018588 ????????????????????????????????????????????????????????????ACGCTTAATGTGTT-TCTCTGGTCA---------------------------------------------------------------------------------------------------------------------------------------------------------TG----AGCTATACAGGCCA--CTGGGAAAGG-TTCAATTCAAACAT-TCTAAGTAAACCAGTCATCTGGAGTA-GGCCTAGT-GCTAT-ATTT-TTGTAA-ACAAGTT----AAAACTTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAA-AACGCAACGAAATGCGATAAGTAATGTGAAT-TGCAAGAATTCAGTGAATCATCAAATCTTTGAACGCCACATTGCAACCCT-TGGTAATTCCTTG???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-???????????????????????????????????????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_EU018589 ????????????????????????????????CCCTTGACCAAAACCCTCTCTGCGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACATTGCCTGCTA------------GCTCAGTC-AACCCGAGTTGTTCACTTGGAGTTTGATCTTT-----TTTACTGATGGGTTAAGCTTTAGTGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGCAGGCCC--CTGGGAAAGG-GTCCATCCCATTTG-AATATGTCAATCAGCTGTCT-GAGTT-GGCCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGTATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGGTATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TAT-GGATCACCCCATCGAAATACAATAGGCA-GGACAACG-AACCTCTGTTAG-CTGAC-TTAGTA-AC-TGTT-TCAAGACACAAACCAAG-TCACT--TGCTAG-GTTC-AAGCCTGGCCTCC-TCA-GTCCTCCAATTCAAA--AA------ACTG-GGTTGAAC?????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_EU018590 ??????????????????????????????????CTTGACTAAAACCCTCTCTGTGTACCAATCTATGTTGCTT-TCCTAGGTGGTTGGTT----CAGCTGCCGTCCAACATTGCCTGCTA------------GCGCAGTC-AATCCGAGTTGTTAACTTGGAGTTTGATCTAT-----TTTACTGATGGGTTAAGCTTTAATGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGTAGGCCC--CTGGGAAAGG-GTCCATCGCAAGTG-AATTTTTCAATCAGCTGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC---TTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCA-TACAAA-CCCGCTCAAAA-GT-----TATGGTA-TTGATGGGAAATGAA-CGGTT-GCCAACCA----AAGTG-TGGGGGAACAC-CCATCGAAAACA-ATAGGCAGGGACAAAA-AACCTCCGGTAG-GCGAC-TTAGTA-AC-TGTTTTTAAGAAAAAAAC--AG-TCATT--GGCAGG----T-TTACCCGGCCCCA-ATA-AACCTCC-ATAAAAA-----AAAT-AATG-GGTTGACC---------------G--GAACAGAGGAAC-CCGGA?? Tuber_sp._ex._Quercus_garryana_Oregon_EU334899 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CAGCGAGCCTTAATTTTATATTCTATCAAGAATCCAAGGCTATGCAGGCCC--CTGGGAAAGG-GTCCATTCCAAGTGAAATATGTCAATCAGCTGTCT-GAGTT-GACCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAATG-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG-TCACT--TACTAG-ATTC-AAGCCTGGCCTCC-TCA-GAC??????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_EU334900 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CTGATGGGTTAAGCTTTAGTGGGTCAGCAAGCTTAATTGATA---TCTATCAGGATC----AACTAGATAGGCCC--CTGGGAAAGG-GTCCATCGCAAGTG-AATATTTCAATCAGCAGTCT-GAGTC-GGCCTAGT-GCCTT-ATTC--GTTAA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAACA-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGGTTTCAAGACACAAACC-AG-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_FJ235159 ??????????????????????????????????CCTTGAGGAAATCCTCTCT-TGCCCCAATCTATGTTGCTTCCCCTAGGTGGTTGGTT---TCAGCTGCCGTCCAACTTTGCCTGCTA------------GCTCA--TCAACCCGAGTTGTTCACTTGGAGTTTGATCTTT-----TTTACTGATGGGTTAAGCTTTAGTGGGTCAGCGAGCTTAATTTATA---TCTATCAGGATC----AGCTATGCAGGCCC--CTGGGAAAGG-GTCCATCCCAAGTG-AATATGTCAATCAGCTGTCT-GAGTT-GGCCTGGT-GCCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGAAAGTAATTGTGAAT-TGCA-GAATTCAGTGAATCCTCAAATCTTTG-ACG-CACATTGCGCCCCT-TGGA-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTATTTGATGGGAAGTGAACCTGTT-G-CAACTA---AATGTG----------------------------------------------------TGA???????????????????????????????????????-??????????????????-?????????????????-?????????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Quercus_garryana_Oregon_FJ348404 ????????????????????????????????????????????????????????????????????????TTTTCCTAGGTGGTTGGTT---TCAGTTGCCGTCCAACATTGCCTGCTA------------GCTCAGTCAAACCCGAGTTGTTCACTTGGAGTTTGATCTAT-----TTTACTGATGGGCTAAGCTTTAGTGGGTCAGCGAGCTTAATTGATA---TCTATCAGGATC----AGCTATGCAGGCCC--CTGGGAAAGG-GTCCATCGCAAGTG-AATATGTCAATCAGCTGTCT-GAGAT-GGCCTAGT-ACCTT-ATTC--TTTGA-ACAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATAGAATCTTTGAACG-CGCATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTACAAA-CCCGCTCATAA-ATG-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTT-G-CAACTA----AAGTG-TGT-GGATCACCCCATCGAAATAC-ATAGGCA-GGACAATG-AACCTCTG-TAG-CTGAC-TTAGTA-AC-TGTTTTCAAGACACAAACC-AG-TCACT--TGCTAG-ATTC-AAGCCTGGCCTCC-TCA-GACCG????????????????????????-?????????????????????????????????????????????? Tuber_sp._ex._Salix_caprea_Poland_AY748863 CATTATGCATATATG-GGACAAGAAATTGTT--CCCTGACCCAAATCCTCCCTGCGTACCAATCAATGTTGCTT-TCCCAGGTGGTTGGCC---CCGGCAGCCACCCAATACTGCCTGCTAGGCGAGTTAACCAGTGGTCTGAATATCACTTGGAGAACTCGATCCTGTCCTGACAGAGTGAGC--------------TCAATATGTCGGTGAGTTCAATTTGTA---CCTGTCAGGATG----GGCTATGCGGGTAC--CTGGGAGAGG-GCTCATCCAAAGCG-AATAATTGAATCAGCTGTCT-GAGTT-GGCCCAGT-GCCGT-ATTC--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCCCTCATAG-AAA-T--TATGGTA-TTGAT-GGAAGTGAA-CTAAG-C-CTACCA----ATTTG-CTT-AGGTCACCCCATCGAAATGC-ATAGGCA-GGACAATC-AACCTCCG-CAA-TGGAC-TTAGTA-GC-TGTTTTGAAGACATGAATC-AG-TCCTT--TGCTAG-GTTC-TGGCCTGGCCTCC-ATG-GACCTCC-ATCCAAA---ATGAAC-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_sp._ex._angiosperm_Italy_DQ402504 ?????????TATCTG-GGACACCCAAGTGTT--CCCTGACCCAAACCCTCTCTGTGTACCAATCCATGTTGCTT-TCCCGGGTGGTTTGTTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGGAAAGG-GCCTATCCAAAGCG-AATAATTGAATCAGCAGTCT-GAGTT-GGCCCAGT-GCCTT-ATTC--TTTGA-ACAAGTT---TAAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCGCTCATAA-GTA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGAG-G-CTAGTC----CTATG-CCT-GGATCACCCCATCGAAATGT-ATAGGCA-GGACAATC-AACCTCTG-CAA-TGGAC-TTAGTA-AC-TGTTTTGAAGACAAAAATC-AG-TCCCT--TGCTTAGGAAC-TGGCCTGGCCTCC-ATG-GACCTCC-ATCCAAG---ATGAAA-TCTG-GGTTGACCTCGGATCAGGTAGGG??????????????????????? Tuber_sp1_DQ478643_China ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-????????????????????????????????????GAC---------------------------------------------------------------------------------------------------------------------------AATTACGTGAATCATCTAATCTTTGAACG-CACATGGCGCCCCT-TGGT-ATTCCTTGAGGGCATGCCTGTTCGAGCGTCACTACAAA-CCCTCTCACCA-ACA-T--TGTGGTA-TTGAT-GGAAGTGTA-CAGTG-G-TTACCT----ATGTG-TCC-ACCGCACTCTGTTGAAATAC-ATTGGTA-GAACAATT-GATCTTTG-TAA-CGAAC-TTAGTA-AA-TGTTTTTAGAACATCAATC-AG-TTCAT--TGCAAGAGTCT-TGAACCTGCCTCCATTG-GATCCCC-ATCTAAT---ATGAAC-TTGG-GGTTGACCTCGAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_spinoreticulatum_U188_Maryland_isotype ??????????????????????????????????????????{AT}GTT{AT}{AC}CCTCTGTGTACCGAGCCATGTTGCTT-TCCCAGGCTACCTACT--GTTGGTATCCACCTGCTCTTCCCTGCTG------------GGTTG----------------------------------------------------------------------------------------------------------AGCTGTGTGGGTTTC-CTGGGAAAGG-TATAATATAAATGCTAATTGTTGAACAAGCTGTCT-GAGGA-GGCCCAGT-GCCGC-ATAT--TTTGA-ATAAGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCTCT-TGGT-ATTCCTTG-AGGCATGCCTGTTCGAGCGTCACAATTAC-CCCT{CG}TCACGG-ATC-T--CGTGGTG-TTGAT-GGTAGTGGA-TTCCA-G-TCACTG----ATGTGTGGCTATACTACTCCATCGAAATGA-ATAGGGA-GGACTATT-GGCCTCAG-CAA-TGGAC-TTAGTA-AA-TGTTTTCAGAATGTAAACC-AG-TCTTG--TGCCAG--GTC-TGGTCCGGTCCTA-CTG-GATCCCGCATCCAAC---ATGTAT-TCTG-GGTTGACCTCGGATCAGGTAAGGA--TACCCGCTGAAC-TTAAGCA Tuber_taiyuanense_DQ478637_China ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTGAGGGCATGCCTGTTCGAGCGTCACTGCAAA-CCCCATCATAG-AAA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGAG-C-CTACCA----ATATG-CCC-AGGTTACCCCATTGAAATGC-ATAGGCA-GGACAATT-AACCTCTG-CAA-TGGAC-TTAGTA-GC-TGTTTTGAAAACATGAACC-AG-TCCCT--TGCTAG-GTTC-CAGCCTGGCCTCC-ACG-GACCTCC-ATCCAAG---ATGAAT-TCTG-GGTTGACCTCGGATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA Tuber_texense_JT15162_Texas ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????-??????????????????????GAGTCTGTAGTCT-GAGTTAGGCCTAGA-GCCTAGAACT--TTTAA-ACATGTT----AAAAC-TTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAAT-TGCA-GAATTCAGTGAATCATCGAATCTTTGAACG-CACATTGCGCCCCT-TGGT-ATTCCTTG-GGGCATGCCTGTTTGAGCGTCACTACAAA-CCCTCTCATAG-ATA-T--TATGGTA-TTGAT-GGAAGTGAA-CTGTG-T-CTACTG----GTGTA-CTC-GCACCACTCCATCGAAATGA-ATAGGCA-GGATAGGT-GGCAACCG-CAA-GCGAC-TTGATA-AA-CGGTTTTCAGACATGGACC-AG-TCCTT--TGTTATGTTGC-GCAGCCTGTATCT-ATG-GACTCCC-ATCCACT---AAGCAC-TTTG-GGTTGACCTCAAATCAGGTAGGGA--TACCCGCTGAAC-TTAAGCA ; END; BEGIN CODONS; CODONPOSSET * UNTITLED (CHARACTERS = Fig4_Rufum) = N: 1-796; CODONPOSSET CodonPositions (CHARACTERS = Fig4_Rufum) = N: 1-796; END; [ The following blocks are output data for analysis step 10284 ] BEGIN TREES; TITLE Fig4_Rufum; LINK TAXA = TaxaForAnalysisStep10284; TREE Fig._4 = [&R] (Tuber_spinoreticulatum_U188_Maryland_isotype,(((((((Tuber_sp._ex._Epipactis_helleborine_Japan_AB428788,((((Tuber_sp._ex._Epipactis_atrorubens_California_2_AY634152,Tuber_ferrugineum_AF132506_France),((Tuber_sp._ex._Epipactis_helleborine_California_AY634153,Tuber_sp._ex._Epipactis_helleborine_California_4_AY634169),(Tuber_sp._ex._Populus_alba_Hungary_3_DQ355253,Tuber_rufum_AY112894_Italy))),Tuber_sp._ex._Populus_tremula_Austria_2_EF644166),((Tuber_sp._ex._Salix_caprea_Poland_AY748863,Tuber_taiyuanense_DQ478637_China),(Tuber_malacodermum_32319_Spain,Tuber_nitidum_BM105_Spain)))),Tuber_rufum_var_lucidum_AZ2097_Italy),(((((Tuber_sp._ex._Epipactis_helleborine_California_4_AY634170,Tuber_sp._ex._Quercus_garryana_Oregon_FJ235159),(Tuber_sp._ex._Quercus_California_2_EF559300,Tuber_sp._ex._Quercus_California_2_EF559298),(Tuber_sp._ex._Quercus_garryana_Oregon_EU018589,((Tuber_sp._ex._Quercus_garryana_Oregon_EU334899,Tuber_sp._ex._Conifer_Oregon_FJ789634),Tuber_sp._ex._Quercus_garryana_Oregon_FJ348404))),(Tuber_sp._JT1844_Oregon,Tuber_sp._ex._Quercus_douglasii_California_EF661992,(Tuber_sp._ex._Quercus_garryana_Oregon_EU018590,Tuber_sp._ex._Quercus_garryana_Oregon_EU334900,Tuber_candidum_AY830856_Oregon_7))),((Tuber_sp._ex._Oregon_FJ789635,Tuber_JT9559_Oregon),Tuber_quercicola_AY918957_Oregon)),(Tuber_sp._ex._angiosperm_Italy_DQ402504,Tuber_sp._China_DQ478675))),(((Tuber_sp._ex._Corylus_North_Carolina,((Tuber_RH493_Iowa,Tuber_sp_RH922071_Iowa),Tuber_sp._ex._Quercus_Missouri_EU202709)),Tuber_JT11325_Quebec),(Tuber_sp._ex._Quercus_douglasii_California_DQ974798,((((Tuber_huidongense_DQ478632_China_2,Tuber_huidongense_DQ478645_China_2),Tuber_furfuraceum_FJ176920),Tuber_liaotongense_DQ478645_China_5),Tuber_JT17711_Quercus_Mexico)))),((((Tuber_sp._ex._Quercus_Missouri_2_EU202705,Tuber_lyonii_JT5665_Texas_2),Tuber_RH8310775_Iowa),(Tuber_sp._3_Mexico,Tuber_texense_JT15162_Texas)),Tuber_Missouri_nonumber)),(Tuber_luomai_JT17457_Oregon,Tuber_sp._ex._Quercus_garryana_Oregon_EU018588)),Tuber_sp1_DQ478643_China),(Tuber_sp._EM_Estonia_AJ893251,Tuber_sp._TH_Epipactis_HB5_New_York,Tuber_sp._JT15106_Quebec)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr58371] END;