#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 15, 2026; 8:39 GMT TreeBASE (cc) 1994-2008 Study reference: Leander C., & Porter D. 2001. The Labyrinthulomycota is comprised of three distinct lineages. Mycologia, 93(3): 459-464. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S693] [ The following blocks are input data for analysis step 1051 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1051; DIMENSIONS NTAX=28; TAXLABELS Achlya_bisexualis Cafeteria_roenbergensis Chaetoceros_didymus Chlorarachnion_reptans Costaria_costata Developayella_elegans Diplophrys_marina Euglypha_rotunda Hyphochytrium_catenoides Labyrinthula_sp_f Labyrinthula_sp_s Labyrinthula_zosterae_e Labyrinthula_zosterae_w Labyrinthuloides_haliotidis Labyrinthuloides_minuta Labyrinthuloides_yorkensis Lagenidium_giganteum Pfiesteria_sp. Proteromonas_lacertae QPX QPXs Schizochytrium_aggregatum Synura_glabra Thraustochytrium_kinnei Thraustochytrium_motivum Thraustochytrium_striatum Tribonema_aequale Ulkenia_profunda ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2596] TITLE SSU_rDNA; LINK TAXA = TaxaForAnalysisStep1051; DIMENSIONS NCHAR=1232; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Achlya_bisexualis CATACGCTTGTCTCAAA-GATTAAGCCATGCATGTCTAAGTATAAACAATTTTGTAC-TGTGAAACTGCGAATGGCTCATTATATCAGTTATAGTCTACTTGATAGTACCTT---ACT---ACTTGGATAACCGTAGTAATTCTAGAGCTAATACATGCGTAAA-TACCCA-ACTGCTTGT-CGGACGGGTAGCATT-TATTAGATTGAAACCAATGCGG--CTTCGGTCGGTATTGTGTTGAGTCATAATAACTGTGCGGATCGC-TTTTA-----------GCGATACATCAATTGAGTTTCTGCCCTATCAGCTTTGGATGGTAGGATATGGGCCTACCATGGCGTTAACGGGTAACGGGGAAT--TAGGGTTTGATTCCGGAGAGGGAGCCTTAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATG-TCGGGCTTTTTAAGTCTGACAATTGGAATGAGAACAATTTA---------------------------------------------------------------------------------------------AATCCCTTAACGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAA--GTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTTTGAGCGTCCGGTCGAGT-TTATC------TCTGTACTATGGATGTTTGGGCCATTT--TTTGTGAGGATGCTTTTCTGCC-ATTCAGT--TGGTGGTTGAGTAGACTTGCATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATT--AGCATGGAATAATAAGATACGACCTTGGTG-----------GTCTATTTTGTTGGTTTGCA-CACCGAGGTAATGATTAATAGGGACAGT---T-GGGGGTATTCATATTTCAACGTCAGAGGTGAAATTCTTGGATCGTTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCATAAACTATGCCGACTCGGGATTGGCAGTCGTTT-TTTTGAATGACCTTGTCAGCACCGTATGAG-------- Cafeteria_roenbergensis CATACGCTTGTCTCAAA-GATTAAGCCATGCATGTCTAAGTATAAGCGA--------AAGCGAAACTGCGAATGGCTCATTATATCAGTTATAGTTTATTTGATAGT-TTTC----CT---ATATGGATAACCGT?GTAATTCTAGAGCTAATACATGCACGA-AGTCCGG-ATCCCT--CGGGA{AG}AAGGATGCGTT-TATTAGATACAACCTTCAACACA-----------------GGTGAATCATAATAACCGAGCGAACCTCGAT-------------AGAGGTGGTTCATTCAAGTTTCTGCCCTATCAGCTTTCGATGGTAGGGTATTGGCCTACCATGGCGTTAACGGGTAACGGAGAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTAAAGCAGGGAGGTAGTGACAAGAAATACCGACGGGTGAC---TTAATGTC-GCCCATTGGAATGAGGACAATTTA---------------------------------------------------------------------------------------------AAACCCTTACCGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAA-GTTGT-TGCAGTTAAAAAGCTCGTAGTTGAATTTCTG{AG}{AG}CTCGCCGAG?CGGCGG?CTTTG----G??{CG}----------------------------------------ACCA--CTCCGCA--AGTTCATCC{CT}CG?CCTTCGGGG-CGT--CATTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTTTAGG---CTTGAATACATT--AGCATGGAATAATGAGATAGGACCA{AG}GTC--------------GTATTTTGTTGGTTGCGCGAT-TCGG-TAATGATTAATAGGGACAGT---T-GGGGGTATTCATATTTAATTGTCAGAGGTGAAATTCTTAGATTTATTAAAGATGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTCAGGGGATCGAAGAGGATTAGATACCCTCGTAGTCTTGACCATAAACTATGCCGACTCAGGATTGGCA---------CCCTTTTTTAACAGGGTGTCAGCACTGTA-------- Chaetoceros_didymus GATACGCTCGTCTCAAA-GATTAAGCCATGCATGTCTAAGTACAA---ATCTTTTAC-TTTAAAACTGCGAATGGCTCATTATATCAGTTTTAACCAAACCGAGAGTCCCTT---ACT---ACTTGGATAACCGTAGTAATTCTAGAGCTAATACATGCA-TCTATACCGA-ACT-----TTTGGAACGGTAGTATT-TATTAGATAGAAACCAACCAGCTTTGCT-----GTATTTTGGTGATTCATAATAACTTAGCGAATCGCATGCC----TTTG-GCGGCGATGGCTCGGTCGGAATTCTGCCCTATCAGCTTTGGAAGGTAGTGTATTGGACTACCTTGGCTTTAACGGGTAACGGGG-AT--TAGGGTTTGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCCGGGCATTTATTTGTCTGGCAATTGGAATGAGAACAATTTA---------------------------------------------------------------------------------------------AATCCCTTATCGAGGATCAATTGGAGGGCAAGTCT{AG}GTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAA--GTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTAGGAGGGACCGGTCAGAT-CATT-----GATCTGTACTTGTGTCCTCTCCCGCCATC--TTTGGGTGGATCCTTTCTGGC--ATTAAGT--TGTCGGGAAGGGGATG-CCCATCTTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGAC--TTACGTCATTGAATATATT--AGCATGGAATAATAAGATAGGGCTTCAGT-------------ACTATTTTGTTGGTTTGC-GTACCGAGGTAATGATTAACAGGGACAGT---T-GGGGGTATTCGTATTCAGTATTCAGTGGTGAAATACTTAGATCTACGAAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTATGGGGATCGAAGATGATCAGATACCATCGTAGTCTATACCATAAACTATGCCGACTCAGGATGGGCA------AGATGCTTTTGGTCTTGTCTGCACTGTATGAG-------- Chlorarachnion_reptans CATATGCTTGTCTCAAA-GACTAAGCCATGCATGTCTAAGTATGAACAACTTTATAC-TGTGAAACTGCAGATGGCTCATTAAACCAGGAATAATTTTTTTGATGGTGACAA---ACT---ACATGGATATCCGTGGTAATTCTAGAGCTAATACATGCGTCGACACCGCA-A---------------GGTGGTATT-TATTAGATCCGAACCAAGCC-------TTCGGGGTTTCTTGGTGAATCATGATAACTGTTCGTATTGC----CAGCTCTGC-CAGGCGAAAGTTCATTCAAATTTCTGCCCAATCAGCTATTGACGGTAGTGTAGTGGACTACCGTGGCTTTAACGGGTGACGGAGAAT--TAGGGTTCGATTCCGGAGTGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTTACCCAATCCCGACACGGGGAGGTAGTGACAAGAAATATGATGACTGTGCCCTTTGCGGCAGAGTTTTTCAAATGAGTGTAATGTA---------------------------------------------------------------------------------------------AATGCCTATGCGAGTATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAT--GTTGTTGCAGTTAAAAAGCTCGTAGTTGGATATCTGGCATTGCGTTGACGGCCCGCCTT-----CGGTTGGGTGCTGGATTCGCTTGCCTATTTCCGGTTG-GC-GTCGGTTCCCTTTGTTGGGCTATAGGGCCGTTTCGCGATC-CGGATCGTTTACTTTGAAGAAATTCGAGTGTTCAAAGCAGGCTTACG---CCGT--GAAGATTGCAGCATGGAATGATGACATAGAACTGTTGTG-----------TTCTATTTTGTTGG-TTCTGGGACCACAGTGATGATTGATAGGGACAGT---T-GGGGGTGCTGCTATTCCGCGGCCAGAGGTGAAATTCTCAGATTCCCGGAAGAGCAACTTATGCGAAAGCATTCACCAAAGATGTCTTCTTTAATCAAGAACGA-AAGTTGGGGGATCGAAGACGATCAGATACCGTCGTAGTCTCAACCATAAACTATGCCGACTAGGGATTGGGGGACGTT-GTTTTATCCGACTTCCTCAGCACCTTATGAG-------- Costaria_costata CATACGCTTGTCTCAAA-GATTAAGCCATGCATGTCTAAGTATAAGCG-CTTTATAC-TGTGAAACTGCGAATGGCTCATTATATCAGTCATAGTTTATTTGAAAGTCCCTT---ACT---ACATGGATAACCGTAGTAATTCTAGAGCTAATACATGCA-TGAAGGCCCA-ACTGCTTCGGCGGACGGGCTGCATT-GATTAGACCGAAACCAATGCG--TCTTCGGACGGTTTTGTGGTGAATCATAATCACTT-GCGGATCGC-----ACGCTTCG-GCGGCGACGTTTCATTCAAGTTTCTGCCCTATCAGCTTTGGATGGTAGGGTATTGGCCTACCATGGCTTTAACGGGTAACGGGGAAT--TGGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCCGGGCTTATACAAGTCTGGCAATTGGAATGAGAGCAATTTA---------------------------------------------------------------------------------------------AATCCATCATCGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAA--GTTGCTGCAGTTAAAAAGCTCGTAGTTGGATTTGTGGCGCGGCCGTCCGGCGGGGCTCTTTCATTAGGGCCGTTTGTCCGGTTTTTCGGCCGCTCCATTCTCGGGTAGCGTGTTGCTGGCATTAGGT--TGTCGGCTTCTTCGCG-CCCGTCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGC--TTAGGCCGTTGGATACATT--AGCATGGAATAATGAGATAGGGCCACGACG-----------GTCTATTTTGTTGGTTTGCA-CGTTGTGGTAATGA-TAACAGGAACGGT---T-GGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATGGAAGACGAACTACTGCGAAAGC?TTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCATAAACTATGCCGACTAGGGATTGGCGGTCGTT-AATTTACAGGACTCCGTCAGCACCTTCCGAG-------- Developayella_elegans CATACGCTTGTCTCAAA-GATTAAGCCATGCATGTCTAAGTTTAAACTACTTTAAAC-GGTGAAACTGCGAACGGCTCATTATATCAGTTATAGTTT{AG}TTTGATAGTGCCTT---ACT---ACTTGGATAACCGTAGTAATTCTAGAGCTAATACATGCTTCAA-TCCCCG-ACTGCT--CGCGGAAGGGGTGTATT-TATTAGATCAAAACCAATGC-GGGTTCGCCCCGGTATTGTGGTGAGTCATAATAACTGT-CTGATCGCATGGC--CTTGCG-CCGGCGATATGTCATTCAAGTTTCTGCCCTATCAGC-TAGGATGGTAGGGTATTGGCCTACCATGGCGTTAACGGGTAACGGAGAAT--TGGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCCAATTCGGGGAGATAGTGACAATAAATAACAATGGCGGGCATTTTCATGTCTGCCAATTGGAATGAGAACAATTTA---------------------------------------------------------------------------------------------AATCCCTTAACGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAA-GTTGT-TGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTTGGAGAGCTCGGTCCGGCCCGC----AAGGGCTGCGAACCAGTGGCTTCTCTGGCCATCCTTGGGCGGACG-CAG-CTGGTCTTA-GTTGATCGGTTGTGGGATGCC---CATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCTTAT-GCCGC-TGAATACATT--AGCATGGAATAATAAGATAGGACTTTGGT-------------ACTATTTTGTTGGTTTGCA-TACCAAGGTAATGATTAATAGGGATAGT---T-GGGGGTATTCATATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATGAACTTATGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCATAAACTATGCCGACTAGGGATCAGCAGGTGTCGTTTTTGACCCTGTTGGCACCTTATGAGAAAT-------- Diplophrys_marina CATCT?CT?CT-TCAAA-GA-TAAGCCATGCATGTCTAAG?CTAAACAAGTTACTA---CTGAATCTGCGTAAGGCTCA??ACAAA?--ATTTTCACCTACCCTCGAACCAT-----TGACAACTGGAT?ACCGTTGTAATTCAAGGGCTAATCATGCATCCAAAGGGGC?---TTCA------TGAGTCTC?GCG?GTGTTAGCTTTTAACCAACA---------------CTTATT?GGTGA??CA?GACAA?CTGCGAATCCTTACGCT-CTCGT?AT?AACGATGACGAGGTCGGGTCATT?CC?CATCAGGTTTCGT?TCGAGTGTATTGT??TCGATAG?CTC?TGCGAGTGACGGGGAATAGTGG--TTTGAC?C?GGAGAGTGAGCATGA-AGAC?GGGACTACATCTAA?GAA?GCAGCATGCGCGCAAA-TTTCCCAGTGCTCAATGAGCGA?GAA?TGACGAGTGAGGTAAACTTTTTTCTC-T-TAAGAA?AGGT?TTGGAGGTACTACAATTTA---------------------------------------------------------------------------------------------CAACCCTTAAAGA?GATCAATTGGA?GGCGA-TCTGGTGCCAGCA?CTCCGGTAATTCCAG-CTCCAATAGTGTAT?TCAAAA--TTGTTGCAGTT?AAAAGCTCGTAGTTG?GATTCTGGGAAGTGTCG?T??TCTGCGC??GA?GCT??TCATTCTAATTGGTTAGCT?TCCATC---------------?TGTG?A?TC?GCGT?GTTCGT??GTTCGGA?GA?GTGCCACGCAGTTACTGAGAACAAATTGGAAT?CTC?AAGCA?G?TATA---CAGCTT?GAACAATTA?ACTTGGAATAACAAT-TAGCGA?TTGTTT--------------?TAATTGTTGG?TGTCCATAATCA?GT?ATGCATGAAAGGGAACAGTTGTCGGGGATATTCGTATGAGCAAGTCAGA?GTGAACTTCAAAGAT?TTGCT?ACACGAACGACTGCGACAGCATCTATC?AACATGTCTTCATCAATCAAGA?CGAGTAGTAGGGGGATCGAACATGATTATA?ACCATCGTA?TCTTTACCATA?ACGATGC?GACTCGGGAT?GTCAATGTGTCTTTTTTACACGTTGGCAGAACCGTATAAAAAATCATTAA Euglypha_rotunda CATATGCTTGTCTCAAA-GACTAAGCCATGCATGTCTAAGTATAAACAACTTTATAC-TGTGAAACTGCGTACAGCTCATTATATCAGCAATTATTTATTTGATGGTACCTT---ACT---ACATGGATAACCGTGGTAATTCTAGAGCTAATACATGCACAA-AGTCCCA-ACTCTTGCGGGGA-GGG-ATGTATT-TATTAGATACAAAACCAATACCACCTC-GGTGGCTATTCTGGTGACTCATAATAACTGATCGAATCGCATGGC--CTCGTG-CTGGCGATAGTTCATTCAAATTTCTGCCCTATCAGCTTTCGATGGTAGTGTAAAGGACTACCATGGCTATAACGGGTAACGGGGAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAA-TTACCCAATCCTGACACAGGGAGGTAGTGACAAGAAATAACGATACCGGGCCTTAATCGGTCTGGTAATCGGAATGAGTACAATTTA---------------------------------------------------------------------------------------------AATCCCTTAACGAGGATCCACTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAGTAGCGTATATTAAA--GTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGATGAACCAAATTGGCCCGTTCCCTTTCGGGTATGAGTGCCGCTTTGAGTTTGTCATCCT--TCCAGAGAGCTGCGTCTACCGTTTACTCGG--CCGGACGTATGCGATC-TGGATCTATTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATG---CTGTGAATACATT--AGCATGGAATAATAATTTAGGACTTTGGT-------------TCTATTTTGTTGGTTTCTAGGACTGAAGTAATGATTGATAGGGATAGT---T-GGGGGTGCTAGTATTCCACGGCCAGAGGTGAAATTCTTGGATTCGTGGAAGACTAACTACTGCGAAAGCATTCACCAAGGATGTCTTCTTTAATCAAGAACGA-AAGTTGGGGGATCGAAGACGATCAGATACCGTCGTAGTCTCAACCATAAACTATACCGACTCAGGATCAGTGAACGTTGCATTT---CGACTTCATTGGCACTGTGTGAG-------- Hyphochytrium_catenoides CATACGCTTGTCTCAAA-GATTAAGCCATGCATGTCTAAGTATAAACAACTCTATAC-TGTGAAACTGCGAATGGCTCATTATATCAGTTATAGTTTATTTGATAGTATCTT---ACT---ACTTGGATAACCGTAGTAATTCTAGAGCTAATACATGCATGAA-ATCCCG-ACTTTT-----GGAAGGGATGTATT-TATTAGATTGAAACCAATGCAGGGGCAACCCTGGTATTGTGGTGAGTCATAATAACTGTGCGGATCGCATGGC--CTTGCG-CCGGCGACAAATCATTCAAGTTTCTGCCCTATCAGCTTTGGATGGTAGGGTATTGGCCTACCATGGCATTAACGGGTAACGGAGAAT--TGGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCCGGGCTTTTACAAGTCTGGCAATTGGAATGAGTACAATTTA---------------------------------------------------------------------------------------------AATCCCTTAACGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAA-GTTGT-TGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGCCGGAGCGATCGGTCCGCCTCAT----TTGGGGTGTGTACTTGTGTCGTCTGTGGCCATCCTTGGGGAGAAC-TGTTCTGGCATTGAGTTG-TCGGGGCAGGGAACC----CATCGTTTACTGTGAAAAAATTAGAGCGTTTAAAGCAGGCTTAC-GCCGT-TGAATACATT--AGCATGGAATAATAAGATAGGGCATTGGTGG-----------TCTATTTTGTTGGTTTGCA-CACTTATGCAATGATTAATAGGGATAGT---T-GGGGGTATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTCTGAAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCATAAACTATGCCGACTCGGGATTGGCGGGCGTTCTTTTGA--------------------------------- Labyrinthula_sp_f CATACGCTCGTCTCAAA-GATTAAGCCATGCATGTCTAAGTAC--AAGCACTTGTAT-TGTGAAACTGCGAATGGCTCATTATATCAGTTATAGTTTATTTGATAA-AATC----ACT---ACATGGATAACCGTAGTAATTCTAGAGCTAATACATGCGAATTATTCTGA-GCAAT----CAGAATGTATT-TATTAGAACGAAACCAATAC-----AGC---TTG-CTGTTCTTTTGGTGACTCATGATAAATTTACCTATCGC------------G-CAAGCGATGGATCATTCAAGTTTCTGCCCTATCAGCTGTCGATGGTAGGGTATTGGCCTACCATGGCGTTAACGGGTAACGGAGAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGACACGGGGAGGTAGTGACAAGAAATAACAATACGGGGT-C-TATCGATCTTGTAATTGGAATGAGTACAATTTAAAACCGTTAACGAGATCAATTGGAATGGGG?G?GACGAGGAAATAACAA?ACGGGTT-CTATCGATCTGGTAAT?GGAAGGAG?ACAATTTAAAAC?GTTAAACGAGGATCAATTGG-AGGCAAGTATGGTGCCAGCAG--CGCGTAATTCCA-ACTCCAATAGCGTATATTCAAAGTTGT-TGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTTTGGGTAACCTCTTTTAAAGAT----GTGTTGCCCTGCC------TTTCTCACAG-----------GGAATCC-TTTCGGTATTAATTTACTGAATTGAA-GATCTG---TGTCGTTTACTGTGAACAAATTAGAGTGTTTAAAGCAGG-CAAAAGCT---TGAATACATT--AGCATGGAATAATAAGATAAGGCTTCGGC-------------ATTATTTTGCTGGTTTGCGATGCTGTTGCAATGATTAACAGAAACAGT---T-GTGGATATTCGTATGAGCATGTCAGAGGTGAAATTCTTGGATTTTGCTCAGACGAACTACTGCGAAAGCATTTATCAAGGATGTTTTCATTAATCAAGAACGT-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAG--------------------------------------------------------------------------------- Labyrinthula_sp_s CATACGCTCGTCTCAAA-GATTAAGCCATGCATGTCTAAGTAC--AAGCACTTGTAT-TGTGAAACTGCGAATGGCTCATTATATCAGTTATAGTTTATTTGATAA-AACC----ACT---ACATGGATAACCGTAGTAATTCTAGAGCTAATACATGCAAACCCTTCGGG-GGCA---------------TTTATT-GGATACAACCAACACTCGAAAGC----------------TGGTGAGTCACGATAAATTAGCATATCGC------------G--TAGCGATGAATCATTCAAGTTTCTGCCCTATCAGCTGTAGATGGTAGAGTATTGGCCTACCATGGCGTTAACGGGTAACGGGGAAT--TAGGGTTCGGTTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAA-TTACCCAATCCTGACACGGGGAGGTAGTGACAAGAAATAACAATACGGAGC-C-TTATGGTTTTGTAATTGGAATGAGTACAATCTAAAACCCTTAACGAAGATCAATTGGA------------?AGAAATAACAATACGGAGC-CTTA?GGTTTTGTAATTGGAATGAGTACAATCTAAAACCCTTAACGAGGATCAAATTGG-GGGCAAGTCTGGTGCCAGCAGCACGCGTAATTCCAGACTCCAAT?AGCGTATACAAAAGTTGT-TGCAGTTAAAAAGCTCGTAGTTGAAATTTTAGCGCGGTGAGCCCTCTACAATGTA----GCAGCGGCTCTCCGGGCTAATACTCGCAA-----------AGAAGCC-TGTGCTCATTAACTTGGGCGCAGGTT-GAGTTG---CGTCGTTTACTGTGAACAAATTAGGGTGTTTAAAGCAGG-CCTACGTT--ATGAATACATT--AGCATGGAATAATGAGATATGACTTTGGT--------------CGTATTTGTTGGTGACTGCCGGAG---TAATGATTGACAGGAACTGT---T-GTGGGTATTCGTATGAGCATGTCAGAGGTGAAATTCTTGGATTTTGATCAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCATAAACTATGCCGACTA-------------------------------------------------------- Labyrinthula_zosterae_e CATACGCTTGT-TCAAAAGATTAAGCCATGCAAGTGTAAGCTC---ATATGTTCTAT-TTTGAAGCTGCGAATGGCTCATTATATCAGTCACAACTTAATCTACGA----C----ACA---ATATGGATAACTGTAGTAATTCTAGAGCTAATACATGGAACACCTATCGG--------------------TACATT-TATTAGATTGAAACTGGGAAAAC-----------------GTTGATTCAAAATAAAGCTGTAAATCGC---------------ATGCGATATGTAGACTAGGCTTCTGACCTATCAGCTGTCGATGGTAAGGTATTGGCTTACCATGGCGTTAACGGGTAACGGGGAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGC-ACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGATACGGGGAGGTAGTGACAGAAAATAGCAATACAAGAC-C-TATTGGTTTTGTAATTGGAATGAGTTAAATATAAAATTTTTGATTAGGAACAATTGGA?T---------GG?GAAATAGCAATACAAGAC-CTATTGGTTTTGTAATTGGAATGAGTTAAATATAAAATTTTTGATTAGGAA-CAATTGGAGGGCAAGTCTGGTGCCAGCAGCCACGGGAAATCCAG-CTCCAGTAGCGTATATTAAA-GTTGT-TGCAGTTAAAAAGCTCGTAGTTGAAAGTCTGGAGATGATTTCTTTTGATACTTCA----ATTGATTTCTGAC------CCATTTTGCA-----------GGGGTCT-TCTTCGCATTAACTTGTGGGGTCGTA-CGAATG---TAGCGTATACTGTGAGAAAATTAGGGTGTTTAAAGCAAG-CGAGTG-T--GTGAATACATT--AGCATGGAATAATAAGACATAGTTCGGCA-T------------ACTGTCTACTCAGTTTGCAATGCTGGATAATGATTAAAAGGAACTGA---T-GTGGGTATTCGTATGAGTATGTCAGAGGTGAAATTCTTGGATTTTATTCAGACGGTCTACAGCGAAGGCATTTACCAAAGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGCTTAGATACCATCGTAGTCTTAACCATAAACTATACCGACTGAGGATTGGAAACA------------------------------------------- Labyrinthula_zosterae_w CATACGCTTGT-TCAAAAGATTAAGCCATGCAAGTGTAAGCTC---ATATGTTCTAT-TTTGAAGCTGCGAATGGCTCATTATATCAGTCACAACTTAATCTACGA----C----ACA---ATATGGATAACTGTAGTAATTCTAGAGCTAATACATGGAACACCTATCGG--------------------TACATT-TATTAGATTGAAACTGGGAAAAC-----------------GTTGATTCAAAATAAAGCTGTAAATCGC---------------ATGCGATATGTAGACTAGGCTTCTGACCTATCAGCTGTCGATGGTAAGGTATTGGCTTACCATGGCGTTAACGGGTAACGGGGAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGC-ACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGATACGGGGAGGTAGTGACAGAAAATAGCAATACAAGAC-C-TATTGGTTTTGTAATTGGAATGAGTTAAATATAAAATTTTTGATTAGGAACAATTGGAGG---------ACCG?AAATAGCAAAACCAGA-CCTATGGTTTTGTAATTGGAATGAGTTAAATATAAAATTTTGGATTAGGAACCAATTGGGAGCCAAGTCTGGTGCCAGCAGCCGCGGGAAAACCAG-CTCCAGTAGCGTATATTAAA-GTTGT-TGCAGTTAAAAAGCTCGTAGTTGAAAGTCTGGAGATGATTTCTTTTGATACTTCA----ATTGATTTCTGAC------CCATTTTGCA-----------GGAGTCT-TCTTCGCATTAACTTGTGGGGTCGTA-CGAATG---TAGCGTTTACTGTGAGAAAATTAGGGTGTTTAAAGCAAG-CGAGTG-T--GTGAATACATT--AGCATGGAATAATAAGACATAGTTCGGCA-T-----------AC-TGTCTCTCAGTTTGCA-ATGCTGGATAATGATTAAAAGGAACTGA---T-GTGGGTATTCGTATGAGTATGTCAGAGGTGAAATTCTTGGATTTTATTCAGACGGTCTACAGCGAAGGCATTTACCAAAGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGCTTAGATACCATCGTAGTCTTAACCATAAACTATACCGACTGAGGATTGGAAACA------------------------------------------- Labyrinthuloides_haliotidis CATACGCTTGTCTCAAA-GATTAAGCCATGCATGTCTCAGTATAAGCTATT-AATAC-GGTGAAACTGCGTACGGCTCATTACAACAGTAATAATATACATG-ATATTTAACT-ATCT---ACATGGATACTTGTGGCAAATCTAGAAACAAAACATGCGTACAAGACGTG-ACTTTA----TGGGAGCGTCGCATT-TATTGGATTTAAACCA-ATGCCCTTT----GGGCTGTTTTGGTGATTCATAATAACTAAGCGAATCGCAGTGC--TTTCGA-GCGGCGATGAATCATTCGAGTTTCTGCCCCATCAGTTGTCGATGGTAGGGTATTGGCCTACCATGACTGTAACGGGTGACGGAGAAT--CAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACTCAATGTCAATTCGACGAAGTAGTGACGAGAAATAACCATGGGGAGCCCTT-CGGGTTTCCCAATGGGAATGAGAGCAATGTA---------------------------------------------------------------------------------------------AATACCTCATCGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATACTAAT-GTTGT-TGCAGTTAAAAAGCTCGTAGTTGAACTTCTGGTAGGAGTGACCGGACCGTTGGAC----GAATGTCCTCTGTTTGTCTTGTGTCATCTC----------------TGGCCATCC-TCGCTGGCATTTTTTTACGTCA--G---CGTCTTTCACTGTAAATAAATTAGGGTGTTCCAAGCAGATAATT-TT---CGGAATATTTC--AGTATGGGATGATAAGATAGGCTCTCGAT-------------GCTATTTTGTTGGTTTGCA-CATCAAGAGAATGATTAACAGGGACAGT---T-GGGGGTATTCGTATTTAGATGTCAGAGGTGAAATTCTTAGATTTTCGAAAGACGAACTACTGCGAAGGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCGTAAACTATGCCGACTTGCGATTGTCCGATGTTTATTTTATAAGACACGGGCAGCAGCACATGA--------- Labyrinthuloides_minuta CATACGCTCGTCTCAAA-GATTAAGCCATGCATGTCTAAGTGCAAGC-ACT-TGTAC-TGTGAAACTGCGAATGGCTCATTATATCAGTTATAGTTTATTTGATAGATTTCT---ACT---ACTTGGATAACCGTAGTAATTCTAGAGCTAATACATGCAACAA-AGCCCA-------------TTTGGGCTGTATT-TATTAGATAGAAACCAATGCAGGGTTTTCCCTGGTGTTGTGGTGAGTCATAATAACTAAGCGAATCGCAGTGG--CTTCGG-CCGGCGATGAATCATTCAAGTTTCTGCCCTATCAGCTGTCGATGGTAGTGTATTGGACTACCATGGCGTTAACGGGTGACGGAGAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGATACGGGGAGGTAGTGACAATAAATAACAATACGGGGCCCAT-CGGGTCTTGTAATTGGAATGAGTACAATCTA---------------------------------------------------------------------------------------------AATCCCTTAACGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAA-GTTGT-TGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTAGGAGTGACCGTTCCGAACTTG----ATTGT-TCGTGTATTGTGTTTTCTCCAGCCATCCTTGTGGAGAAC-TTTTCTTGCATTAATTT-GTAGGGATTGGGACCCG---CATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCAATC-GCT---TGAATACATT--AGCATGGAATAATAAGATAGGACTTTGGT-------------ACTATTTTGTTGGTTTGCAT-ACCAAATTAATGATCAACAGGAACAGT---TTGAGGATATTCGTATGAACATGTCAGAGGTGAAATTCTTGGATTTTGATCAGACGAACTACTGCGAAAGCATTTATCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCATAAACTATGCCGACTAGGGATTGGCGGACGTTGTCTATATGACTCCGCCAGC-------------------- Labyrinthuloides_yorkensis CATACGCTCGTCTCAAA-GATTAAGCCATGCATGTCTAAGTGCAAGC-ACT-TGTAC-TGTGAAACTGCGAATGGCTCATTATATCAGTTATAGTTTATTTGATAGATGCCT---ACT---ACTTGGATAACCGTAGTAATTCTAGAGCTAATACATGCAACAA-AGCCCA-AC-TTT---TCGGACGGGCTGTATT-TATTAGATAGAAACCAATGCGGGGTTTTCCCCGGTGTTGTGGTGAGTCATAATAACTAAGCGAATCGCAGTGG--CTTCGG-CCGGCGATGAATCATTCAAGTTTCTGCCCTATCAGCTGTCGATGGTAGGGTATTGGCCTACCATGGCGTTAACGGGTGACGGAGAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGATACGGGGAGGTAGTGACAATAAATAACAATACGGGGCCCAT-CGGGTCTTGTAATTGGAATGAGTACAATTTAAATCCCTTAACGAGATCAATTGGAAGG------------------------A?GGGCCCATCGGTCTTGTAATTGGAAGGAGTACAA---TTTAATCCCTTAACGAGGATCAATTGGAGGGCAAGTCTGGTGCCAACAGCCCCGCTAATTCCAA-CTCCAAT?GCGTATATTAAA-GTTGT-TGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTAGGAGCGACCGTGCCGAACTTG----ATTGT-TCGTGTATTGTGTTGTCTTCAGCCATCCTCGTGGAGAAC-TTTTCTAACATTAACTT-GTTGGGATTGGGACCCG---CGTCGTCTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCATTA-GCT---TGAATACATT--AGCATGGAATAATAAGATAGGACTTTGGT-------------ACTATTTTGTTGGTTTGCA-TACCAAATTAATGATCAACAGGAACAGT---TTGAGGATATTCGTATGAACATGTCAGAGGTGAAATTCTTGGATTTTGATCAGACGAACTACTGCGAAAGCATTTATCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTA---------------------------------------------------------------------------------------------- Lagenidium_giganteum CATACGCTTGTCTCAAA-GATTAAGCCATGCATGTCTAAGTATAAACAACTTTGTAC-TGTGAAACTGCGAATGGCTCATTATATCAGTTATAGTCTACTCGATAGTACCTT---ACT---ACTTGGATAACCGTAGTAATTCTAGAGCTAATACATGCGCAAA-TACCCA-ACTGCTTGT-CGGGCGGGTAGCATT-TATTAGATTGAAACCAATGCAGTCTTCGGGCTGGTATTGTGTTGAGTCATAATAACTGTGCGGACCGCACTTGT-----------GCGGTAAATCGATTGAGTTTCTGCCCTATCAGCTTTGGATGGTAGGATATGGGCCTACCATGGCATTAACGGGTAACGGGGAAT--TAGGGTTTGATTCCGGAGAGGGAGCCTTAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCTCTGGCTCTTCGAGTCGGGCAATTGGAATGAGAACAATTTA---------------------------------------------------------------------------------------------AATCCCTTATCGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAA--GTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGTTTGAGCGTCCGGTCCGCT-TCCTCTGGAAGTGTGTACTAAGGATGTTTGAGCCATTT--TTTGTGAGGATGTTCTTCTGCC-ATTAAGT--TGGTGGTTGAATGGACTTGCATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCA-TTGAATACATT--AGCATGGAATAATAAGATACGACCTTGGTG-----------GTCTATTTTGTTGGTTTGCA-CACCAGGGTAATGATTAATAGGGACAGT---T-GGGGGTATTCATATTTCAACGTCAGAGGTGAAATTCTTGGATCGTTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCATAAACTATGCCGACTCGGGATTGGCAGTCGTTTAATTTTAATGACCTTGTCAGCACCGTATGAG-------- Pfiesteria_sp. CATATGCTTGTCTCAAA-GATTAAGCCATGCATGTCTCAGTTTAA--GTCCCAGTAC-GGCGAAACTGCGAATGGCTCATTAAAACAGTTTTAGTGTATTTGATGATCGATC---ATT---ACATGGATAACTGTGGTAATTCTAGAGCTAATACATGCACCC-AAGCCCG-ACT----CCGTGGAAGGGTTGTGTT-TATTAGTTACAGAACCAACCCAGGCTCTGCCTGGTCTTGTGGTGATTCATAATAACCGAACGAATCGCAT---AGCATCCG-CTGGCGATATATCATATCAGATTCTGACCTATCAGCTTTCGACGGTAGGGTATTGGCCTACCGTGGCAATGACGGGTAACGGAGAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCTAAGGAAGGCAGCAGGCGCGCAAA-TTACCCAATCCTGACACAGGGAGGTAGTGACAAGAAATAACAATACAGGGCATC--CATGTCGTGTAATTGGAATGAGTAGAATTTA---------------------------------------------------------------------------------------------AATCCCTTTATGAGTATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAA--GTTGTTGCGGTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGACGACCGGTCCGCC-C--------ATTGGGTGTGCATCTGGCTCGGCCTGGGC--ATCTTCTTGGAGAACGTATCTGCACTTCAT--TGTGTGGTGCGGTATC-CAGGACTTTTACTTTGAGGAAATTAGAGTGTTTCAAGCAGGCACACG---CCTTGAATACGTT--AGCATGGAATAATAAGATAGGACCTTGGT-------------TCTATTTTGTTGGTTTCTAGAACTGAGGTAATGATTAATAGGGATAGT---T-GGGGGCATTCGTATTCAACTGTCAGAGGTGAAATTCTTGGATTTGTTGAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCAAGAACGA-AAGTTAGGGGATCGAAGACGATCAGATACCGTCCTAGTCTTAACCATAAACCATGCCGACTAGAGATTGGAGGTCGTT--ATCTTTACGACTCCTTC{AC}GCACCTTATGAG-------- Proteromonas_lacertae CATACGCTCGTGTCAAA-GATTAAGCCATGCAAGTATAAGTATAAATCATTTTATACAGGTGAAACTGCGAATGGCTCATTATATCAGTTATTGTTTCTTTGATATTAACTT----CT---ACAAGGATAACCGTAGTAATTCTAGAGCTAATACTTGAGAAAAAATAGCG-TAAGCT-------ATGTAAT-TATTAGAATATATACCATTTCCAAGGTG-----------------AGTCATAATAAATATACTGATCGTCTTTAGG------------GACGATAAATCATT-CAAGTTTCTGCCCTATCAGCTTTCGATGGTAGTGTATTGGACTACCATGGCGTTAACGGGTAACGAAGAAT--TCGGGTTTGATTTCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTAACATAGGGAGGTAGTGACAACAAATAACAATGTGGAGCTTTTTAAGTTC-TGCAATTGGAATGAGTGACAATTA---------------------------------------------------------------------------------------------AAATTCGTTTACAAAAGCTAGTAGTGGGCAAGTATGGTGCCAGCAGCCGCGGTAATACCAT-CATTACAAGCGTATATTAAAA-TTGT-TGCATTTAAAAAGCTCGTAGTTGAA-TAATAGATAGAAGAAATGTGCGGCAACTGC----CAAG----------------------------------------CTG{AG}TCTTTCTATCTTTTGTTCTATAGCAATATA-G-AAC--CATTTACTGTGAAAAAATTAGAGTGTTTAAAGCAAATTGTATGATATTGAATATTATT--AGCATGGAATAATAATATATGATTATGAT------------TATATATTATGGTAGTATAATCGTAA---TAATGATTAATAGGGATAGT---T-GGGGGTATTCATATTTCATAGTCAGAGGTGAAATTCAAGGATTTATGAAAGATGAACAAATGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCAAAGAGGCTTAGATACCCTCGTAGTCTTAACTATAAACTATAACGACTAGATATTAGTATAAAAAAATCTTACATAAGATAAATATTAGTATCTAAA-------- QPX CATATGCTCGTCTCAAA-GATTAAGCCATGCATGTCTAAGTATAAGCGATTGTACT---GTGAAACTGCGAACGGCTCAATATATCAGTTATAGTCTCTTCGGTAGTTTCTT-----C---ATTTGGATACTTGCAGTAATTCTGGAAATAATACATGCAATTCGCGCCCGACTTTTA------GGGAGGGCGGCATTTATTAGATTGAAACCAACA---------------TTTCTTGGTGAATCATGATAACTAAGCAGATCGCAGTGCT-----TCGGCGGCGACGAATCGTTTGAGTTTCTGCCCCATCAGTTGTCGACGCGACGGTATTTTCCTCGCGTGACCGTAACGGGTGACGGAGAGT--TAGGGCTCGACTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATGTGAATTCCACGAGGTAGTGACGAGAAATAGCAATGAGCTGCGC-TACGCGTAGTTCGATTGGAATGAGTGCAATGTA---------------------------------------------------------------------------------------------AAACCCTCAACGAGGATCAACTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAGAAGCGTATG--CTAATGTTGTTGCAGTTAAAAAGCTCGTAGTTGAATCTCTGGTTTGCCTGACCGGGCCTTTGGATGAATGTCCACTGTTTGCTTGTTTG------------------------TCGGGCGCGCCATCTTGGCAATGCTTTAGGGTGTTG----CCTCGTTCACTGTAAAGAAAGCAGAGTGTTCAAAGCAGGTCGT-----AGATCTGAATGTT-TATTATGGGATGATAAGATAGGGCTT--------------GTGCGCTATTTTGTTGGTTTGCACGCGCAAGTAATGATTGATGGG----AACAGTTGGGGCTATTCGTATTTGGCAGCTAGAGGTGAAATTCTTGGATTTGCAAAAGACGAACTACGGCGAAGGCATTTAGCAAAGATGTTTTCTTCAATCAAGAACGA-AAGTCAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTGACCGTAAACGATGCCGACTAGCGATCGCGCGGTGTTTCTTTTTATTGACCCGCGCGGCAGCTCATGA--------- QPXs CATACGCTCAAGTCAAA-GATTAACCCATGCATGTGCAAGTATAAACATTTATACT---GTGAAACTGCGAACGGCTCATTATATCAGCTATAGTCTATTTGGTAATGTCT----ACT---ACTTGGATACTCGTAGTAATTCTAGGGTCAATACATGC-ATAAATGCCCAACTTTT-----CGGACGGGCAGTATTTATTT-GATATAAACCAATCGC---TT-CTGGCGTT-TTGTGGTGATTCAAAGTAACTAAGCGGACCGCAGTGC---CTTTTGGCGGCGGTGGACCATTCGAGTTTCTGCCCTATCAGTTGTCGTAGGTAGTGTATTGGACTACCTAGACCTTTACGGGTGACGGAGAAT--TGGGGTTCGATTCCGGAGAAGAAGCCTGAGAGACGGCTACTACATCCAAGGAAGGCAGCAGGGGCGCAAA-TTACCCAATGGTGACACGCCGAGGTAGTGACAACCAATATCGTTGCGGAGCCCTTATGGGTTTTGCTA-TGAAATGAGTGCAATCTA---------------------------------------------------------------------------------------------AAATACTCAACGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCGTTAGCGTAT--ATTAAATTTGTTGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGTAGGAGTGACCTGGCCTTT-GACGAATGTCAATGTTTGCTGTGTGT-------------------------CATCTCTGGCCATCCTCGGCCTGCTTTTAGTAG-----GCCGTCATTTACTGTAAAAAAATTAGAGTGTTTCAAGCATTTTGTATGAAAAGAATATA---T-TAGTATGGAATAATAAGATAGGACTT--------------TGGTGCTATTTTGTTGGTTTGCACACCAAAGTAATGATGAATAGG----GACAGTTGGGGGTATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTACTGCGAAGGCATTTACCAAGGATGTTTTCATTGATCAAGAACGA-AAGTATGGGGATCGAAGATGATTAGATACCATCGTAGTCTATACTTCAAACTATGCCGACTTGCGATTGTCTGGTGGT--GTTTTTTGGCCCCAGGCAGCAGCA-------------- Schizochytrium_aggregatum CATACGCTCGTCTCAAA-GATTAAGCCATGCATGTCTAAGTATAAGCGACT-TATAC-TGTGAAACTGCGAATGGCTCATTATATCAGTTATAGTTTATTTGATAG-TACTT---TCT---ACTTGGATAACCGTAGTAATTCTAGAGCTAATACATGCATCAA-CGCCTG-ACTTTT---GTGGAAGGGCTGTATT-TATTAGATACAAACCAATGC-GGACTTTGTCCGGTATTGTGGTGAGTCATAGTAACTAAGCGAATCGTATGAC--CTTGCG-TCGACGATGAATCATTCAAGTTTCTGCCCTATCAGCTGTCGATGGTAGGGTATTGGCCTACCATGGCGTTAAC-GGTGACGGAGAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTAATACGGGGAGGTAGTGACAAGAAATAACAATACGGGGCC--T-ACGGTCTTGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAAGATCAATTGGA?G------------------------GCGGGCCCTA?GTTTTT?GTA?TGGGAA?GGTACCAATTTTAATCCCTTAAAGGAGGATCAATTGGGGGCCAAGTCTGGTGCCACAAGCAGCGCTAATTCCAGACTCCAACAAGCGTAGATTAATGTTGT-TGCAGTTAAAAAGCTCGTAGTTGGATTTCTGACAGGAGCGACCGGTCCGACCCTT----TGGGTCGAGTACTTTGTGTTGTCTCTAGTCATCCTTATGGAGAAC-GCTCGTGGTATTAAGTT-ATCGTGAGTGGGAACCA---TATCGTTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCAATC-GCTG--TGAATACGTT--AGCATGGAATAATAAGATAGGACTTTGGT-------------ACTATTTTGTTGGTTTACAT-ACCAAGGTAATGATTAAGAGGGACAGT---T-GGGGGTATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGA------------------------------------------------------------------------------------------------- Synura_glabra CATACGCTTGTCTCAAA-GATTAAGCCATGCATGTCTAAGTATAAACGATCTTATAC-TGTGAAACTGCGAATGGCTCATTATATCAGTTATAGTTTATTTGATGAT-TCTT---ACT---ACATGGATAACCGTAGTAATTCTAGAGCTAATACATGCA-TCAAACCCCG-ACT-----TCTGGAAGGGGTGTATT-TATTAGATGGAAACCAATGCGG--GGTAACCCGGT-ATCTGGTGATTCATAATAA-CTCTCGGATCGATCGCAAGAT---------CGATACCTCATATAAGTTTCTGCCCTATCAGCTTTGGATGGTAGGGTATTGGCCTACCATGGCTTTAACGGGTAACGGAGAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGACACAGGGAGGTAGTGACAATAAATAACAATGCTGGGCTTATTTAAGTCTGGCAATTGGAATGAGAACAATTTA---------------------------------------------------------------------------------------------AATCCCTTATCGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATACTAAA--GTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGATACGGCAGCCGGTCCTCC-CTTAACGGGGTTGTGTACTAAGTTGCTG--TGTCCATC--CTCGAGGAGAACATGCCTGGC--ATTTATT--TGTCGGGTATGGTATC-CTCGTCATTTACTGTGAGCAAAATAGAGTGTTCAAAGCAGGC--TTAGGCCGTTGAATACATT--AGCATGGAATAATAAGATAGGACCTTG--------------GTCTATTTTGTTGGTTTATA-TTCCAGGGTAATGATTAATAGGGATAGT---T-GGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATGGAAGACGAACTACTGCGAAAGCATTTACCAAATATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCATAAACTATGCCAACTAGGGATTGGTGGACGTT---TGT-AACGACTCCATCAGCACCTTATGAG-------- Thraustochytrium_kinnei CGTACGCTTGTTTCAAA-GGTTAAGCCATGCATGTCTCAGTGTAAACTCAT-TGCAC-AGTGAAACTGCGAACGGCTCATTAAATCGGTTCTAGTCTCCAGAGTGGTGTTTTCAATCT---AAATGGATACTTGTGGCAAATCTAGAAACAATACATGCTTGGAGGCCTGACGGTGTTTTCACTGAAGGGCTGCATT-TATTTGATGTTAGGACC-AATACCTTTCGGGGGTGATTCGGGTGATTCAGAGTAACTATGCGAACCGCAGTGG--CTTTTAGTCGGCGGTGACT-TTATGAGGTTCTGCCCTATCAGGCTTTG--CAACGGGTATTGTCCTTTGCAACCGGTCACGGGTGACGGAGAAT--CAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACTCTATGCCAACGCGGCGAAGTAGTGACGAAAAATAGGACTGGGTAGCGCTT-TGCGTTATCTTTGTCCAATGAGAGCAATGTA---------------------------------------------------------------------------------------------AAAGCCTCATCGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTACACTAAA-GTTGT-TGCAGTTAAAAAGCTCGTAGTCTAATGTATGGGAGTTGTGGGGTGGGTGTTTGGT----TGGTTTTGCCGACTAGACAATACTCGCTCC----------------GCTTCCCGC-TTGTTTTGCTCTCTTTTCTAGAAGG-CAAATGTTTCACTGTAAGTAAAACAACTCGCTC-AA-CAGCAAGGT-TATCTTGATATGAATT--AGTATGGGATGATGAGATAGGCTC-GGTC-------------CGTATTTTGTTGGTTTTAG-TGGTCTGAGAATGATGAAGAGGGACAAT---T-GGGGGTATTCGTATTTACATGTCAGAGGTGGAATTCTTGGATTTTGGAAAGACGAACTAATGCGAAAGCATCTACCAAAGATGTTTTCATTGATCAAGAACGA-AAGTTTGGGGATCGAAGATGATTAGATACCATCGTAGTCTAAACCATAAACTATGCCGACTTGCGATTGTTTTGTGTCATTTAATGAGCAGAGCAG---------------------- Thraustochytrium_motivum CATATGCTTGTCTCAAA-GACTAAGCCATGCATGTCTAAGTATAAGCGA--TTATAC-TGTGAAACTGCGAACGGCTCATTATATCAGTTATAGTTTCTTTGATGGTGTTT----TTT---AGATGGATACTTGTGGCAAATCTAGAAACAATACATGCTTACA-GGCCCG-ACTTTT----TGGGAGGGCTGCATT-TATTTGACTTAAACCAATACCCT----TCGGGGTTGTTTTGGTGATTCAGAATAACTAAGCGAATCGCAGTGG--CTTCGGT-CGGCGATGAATCATTCAAGTTTCTGCCCCATCAGTTGTCGATGGTAGGGTATTGGCCTACCATGACTGTCACGGGTGACG-AAAAT--TAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAAGCGCGTAAA-TTACTCAATGTTGATTCGACGAAGTAGTGACGAGAAATAGCAATGCGGAGCAC-TCAGTGTTTTGCAATTGCAATGAGAGCAATGTAAAAGCCTCATCGAGGATCCATTGGAAGG?G----GACGAGAAAT?GCAAT-GGGAGCACTCAGTGTTTTGCAATTGCAATGAGAGCAATGTAAA?GCTT?ATCGAGGATCCA--T?GGGGGCAAGTCTGGTGCCACAACCCGC-GTAATTCCA-ACTCCAAT?GCATATA-T?AACGTTGT-TGCAGTTGAAAAGCTCGTAGTTGAACTTTGGGTAGGAGCGACCT---------------GG-CCTTGGGCGCATGCCCT-TGTTTGCC-----------GTGTGTC-GT?TCTGGCCATCCTTTTCCGCTTTG-GCG-GGAA---TCTTTTACTGTGAGTAAACTGGAGTGCTCAAAACAAGACGTTTGTT----TGGTACATTAAAGCATGGAATAATAAGATAGGACCTGGTT-------------ACTATTTTGTTGGTTTGCA-TAGCTAGGTAATGATTAACAGGGACAGT---T-GGGGGTATTCGTATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACGACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCG------------------------------------------------------------------------------------ Thraustochytrium_striatum C-TACGCTCGTCTCAAA-GATTAAGCCATGCATGTGTAAGTATAAGCGA--TTATAC-TGTGAGACTGCGAACGGCTCATTATATCAGTTATGATTTCTTCGGT-ATTTTC----TTT---ATATGGATACCTGCAGTAATTCTGGAATTAATACATGCTGAGAGGGCCCG-ACTGTT----CGGGAGGGCCGCACT-TATTAGAGTTGAAGCCA---------------AGTAAAATGGTGAGTCATGATAATTGAGCAGATCGC--------TTCTTTGGAGCGATGAATCGTTTGAGTTTCTGCCCCATCAGTTGTCGACGGTAGTGTATTGGACTACGGTGACTATAACGGGTGACGGGGAAT--TAGGGCTCGCT-CCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATGTGGACTCCACGAAGTAGTGACGAGAAATATCAATGCGGGGCGC-TTCGCGTCTTGCTATTGGAATGAGAGCAATGTAAAACCCTCATCGAAGATCAACTGGAAGGGGTAGTGACGAGAAATATCAATGGGGGGCGCTTCGCGTCTTG?TATTGGAATGAGAGCAATGTA??ACCTTCAT?GAGGATCCAACTGGAG?GCAAGTCTGCTGCCAGCAGCCGCGGTAATTCCA-ACTCCAG?AGCGTATGCTAAA-GTTGTATGCAGTTAAAAAGCTCGTAGTTGAATTTCTGGCGCGGGAGCCCC---------------GGTCTTTGCGCGACTGCGCTCTGTTTGCC-----------GAGCGGC-TCCTCTGCCATCCTCGCCTCTTTTTG-AAGTG----CGTCGTTCACTGTAATTAAAGCAGAGTGTTCCAAGCAGGTCGTATGAC--CTGGATGT-TT--ATTATGGGATGATCAGATAAGGCTCGGGT-------------GCTATTTTGTAGGTTTGCA-CATCTGACTAATGATGAATAAGAACAGT---T-GGGGGTATTCGTATTTAGGAGCTAGAGGTGAAATTCTTGGATTTCCGAAAGACGAACTACAGCGAAGGCATTTACCAAGCATGTTTTCATTAATCAAGAACGA-AAGTCTGGGGATCGAAGATGATTAGATACCATCGTAGTCT------------------------------------------------------------------------------ Tribonema_aequale CATACGCTTGTCTCAAA-GATTAAGCCATGCATGTCTAAGTATAAGCG-CCTTATAC-{AT}GTGAAACTGCGAATGGCTCATTATATCAGTAATAGTTTATTTGATGGTCCCTT---ACT---ACCTGGATACCCGTAGTAATTCTAGAGCTAATACATGCACTACATTCCCA-ACTGCTTTAGCGGGCGGGCTGCCTT-TATTAGATCGAAACCAATGCGG--CGCAAGCCGGTGTTGTGGTGATTCATGATAACCTAGCGAATCGCATGTCACTTTGTG-GCGGCGATGTTTCATTCAAGTTTCTGCCCTATCAGCTTCGGATGGTAGGGTATTGGCCTACCATGGCTTTAACGGGTAACGGGGAAT--TGGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGTAAA-TTACCCAATCCTGACTCAGGGAGGTAGTGACAATAAATAACAATGCCGGGC-TCTTCGAGTCTGGCAATTGGAATGAGAACAATTTA---------------------------------------------------------------------------------------------AATCCCTTATCGAGGATCAATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAG-CTCCAATAGCGTATATTAAA--GTTGTTGCAGTTAAAAAGCTCGTAGTTGGATTTCTGGGGCGTCGGATGGGCCCTGG-CTAACGGCTCAGGCTAGCCCGACTCCTGGCGCCCCATC--CGCGGGTGGCTCCCCCTTGGC--ATTAGGT--TGTTGTGGGGGTTAAG-CCCGCCGTTTACTGTGAAAAAATTAGAGTGTTCAAAGCAGGC--TTAGGCCGTTGGATACATT--AGCATGGAATAATGAGATAGGGCCTTGATGGAAGACGTCATGTCTATTTTGTTGGTTTGCA-CGCCAAGGCAATGATTGACAGGGATAGT---T-GGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCATAAACTATGCCGACTAGGGATTGGCGGTCGCC---TCTGTATGGCTCCGTCAGCACCTTTCGAG-------- Ulkenia_profunda CA--CGCTGGTCTCAAA-GACTAAGCCATGCATGTCTAAGTTTAAGCAATTA-A-AC-GGTGAAACTGCGAACGGCTCATTAAATCAGTTATAGTTCCTTTGAAAATGTTTTC-ATTT---AGGTGGATACTTGTGGCAAATCTAGAACTAATACATGCATA-ACGGCCCG-ACTTTT----GGGAAGGGCTGCATT-TATTAGCATTAAACCA-ATACCTCTT-CGGGGGTTGTTTTGGTGATTCATAATAACTAAGCGAATCGCAGATG--CTTCGG-CAGGCGATG-TTCATTCAAGTTTCTGCCCCATCAATTGTCGATGGTAGGGTATTGGCCTACCATGATTGTTACGGGTGACGGAGAAT--CAGGGTTCGATTCCGGAGAGGGAGCCTGAGAGACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAA-TTACTCAATGTCAATTCGACGAAGTAGTGACGAGAAATAACAGTGGGGTGGGCTT-CGCCTACTCTTTCTGTAATGAGAGCAATCTA---------------------------------------------------------------------------------------------AAAACCTCATCGAGGATCAACTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAG-CTCCGGTAGCGTGTATTAAA-GTTGT-TGCAGTTAAAAAGCTCGTAGTTGAAGTATTGGTAGGGCTGACCTGATCTGGCGGT----GAATG-CCGCTAGTTTTTCAGTGTCGTGCC----------------TGGCCATCC-TTTCCGTTTTCTTTTTAAGGAATGG---GATCATTTACTGTAAAAAAATTAGAGTGTTTCAAGCAAGTTGTA-TTAACTGGAATATAGT--AGTATGGAATAATAAGATAGGACTTTGAT-------------ACTATTTTGTTGGTTTGTA-TATCAAGGTAATGATTAACAGGGACAGT---T-GGGGGTATTCGTATTTGGTTGTCAGAGGTGAAATTCTTGGATTTACAAAAGACGAACAACTGCGAA-GCATTTACCAAGGATGTTTTCATTAATCAAGAACGA-AAGTTAGGGGATCGAAGATGATTAGATACCATCGTAGTCTTAACCGTAAACGATGCCGACTTGCGATTGTCCGATGTT--TGTTATAAGACTTGGGCAGCAGCACATGA--------- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = SSU_rDNA) = N: 1-1232; CODONPOSSET CodonPositions (CHARACTERS = SSU_rDNA) = N: 1-1232; END; [ The following blocks are output data for analysis step 1051 ] BEGIN TREES; TITLE Tb5827; LINK TAXA = TaxaForAnalysisStep1051; TREE Fig._1 = [&R] (Ulkenia_profunda,((Labyrinthuloides_haliotidis,Thraustochytrium_kinnei),(((QPX,Thraustochytrium_striatum),((QPXs,Diplophrys_marina),((((Labyrinthuloides_yorkensis,Labyrinthuloides_minuta),((Developayella_elegans,((Achlya_bisexualis,Lagenidium_giganteum),((((Tribonema_aequale,Costaria_costata),Chaetoceros_didymus),Synura_glabra),((Pfiesteria_sp.,(Euglypha_rotunda,Chlorarachnion_reptans)),(Cafeteria_roenbergensis,Proteromonas_lacertae))))),Hyphochytrium_catenoides)),Schizochytrium_aggregatum),((Labyrinthula_zosterae_w,Labyrinthula_zosterae_e),(Labyrinthula_sp_s,Labyrinthula_sp_f))))),Thraustochytrium_motivum))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3721] END; BEGIN TREES; TITLE Tb5827; LINK TAXA = TaxaForAnalysisStep1051; TREE bootstrap_tree = [&R] (Ulkenia_profunda,(Labyrinthuloides_haliotidis,Thraustochytrium_kinnei),((QPX,Thraustochytrium_striatum),(QPXs,((Labyrinthuloides_yorkensis,Labyrinthuloides_minuta),Schizochytrium_aggregatum,Developayella_elegans,Hyphochytrium_catenoides,(Achlya_bisexualis,Lagenidium_giganteum),(Tribonema_aequale,Costaria_costata),Synura_glabra,Chaetoceros_didymus,(Pfiesteria_sp.,(Euglypha_rotunda,Chlorarachnion_reptans)),Cafeteria_roenbergensis,((Labyrinthula_zosterae_w,Labyrinthula_zosterae_e),(Labyrinthula_sp_s,Labyrinthula_sp_f)),Proteromonas_lacertae),Diplophrys_marina)),Thraustochytrium_motivum); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr3722] END;