#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 11, 2026; 4:21 GMT TreeBASE (cc) 1994-2008 Study reference: Soufi Z., Sakuanrungsirikul S., Wongwarat T., Hamarn T., Srisink S., & Komor E. 2013. Sugarcane yellow leaf symptomatic plants in Thailand are infected by White leaf phytoplasma, not by Leaf yellows phytoplasma. Australasian Plant Pathology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S14361] [ The following blocks are input data for analysis step 11728 ] BEGIN TAXA; TITLE TaxaForAnalysisStep11728; DIMENSIONS NTAX=15; TAXLABELS Acholeplasma_axanthum_DQ400425 Acholeplasma_palmae_Strain_J233_DQ004923 Aster_yellows_phytoplasma_watercress_AY665676 Candidatus_Phytoplasma_vitis_FN562932 'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554' Hawaiian_sugarcane_Phytoplasma_JN223447 Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011 Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192 Russian_potato_purple_top_phytoplasma_EU333399 Sugarcane_grassy_shoot_phytoplasma_AB243298 Sugarcane_white_leaf_phytoplasma_AB646271 Sugarcane_white_leaf_phytoplasma_AY139874 Sugarcane_white_leaf_phytoplasma_HQ917068 Sugarcane_white_leaf_phytoplasma_JN223448 Texas_Phoenix_palm_phytoplasma_AF434989 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M17692] TITLE MUSCLE__Alignments; LINK TAXA = TaxaForAnalysisStep11728; DIMENSIONS NCHAR=2419; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100 2110 2120 2130 2140 2150 2160 2170 2180 2190 2200 2210 2220 2230 2240 2250 2260 2270 2280 2290 2300 2310 2320 2330 2340 2350 2360 2370 2380 2390 2400 2410 2420 2430 2440] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Acholeplasma_axanthum_DQ400425 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCCGTCAAACCACGAAAGTCAGCAATACCCAAAACCGGTGGCCTAAC--CTGCAAAGGAGGGAGCCGTCTAAGGTAGGGTTGATGGTTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGAGCATAACAGTAAGAATAACTTACAAAAACTCTACTCTC-------TCGTCATATTCAGTTTTGAAGGATTTTC-----CTTC---TAAT---------------------------AATATTTA----------------------------------------------TTAGGGCCTATAGCTCAGCTGGTTAGAGCGCACG-CCTGATAAGCGTGAGGTCGATGGTTCAAGTCCATTTAGGCCCACCATTATAAGGCTGCTATA------------GTAGTCTGGT-------------------------------------------AAATGAGAT-CTTTGAAAAGTAGATAAATTCTGTCGTAACAAATAATAAAAAAGTTTAATTAGCAATAATTAAGCGCGTAAAAAGGTTAAGAAAGTAAGGGCACACAGTGAATGCCTAGGCACTAAGAGCCGAAGAAGGACGCAACTAACGGCGAAACGCCACGGGAAGCAGTAAGTATGTGAAGATCCGTGGGTATCCGAATGAGGGAACTCGGCATGTAGAAGACATGTCACGTCGAAAGACGAGGGAAACGCAGTGAATTGAAATATCTTAGTAACTGCAGGAAAAGAAAGTAAAAACGATTCTGCGAGTAGCGACGAGCGAAAGTGGAGGAGCCCGATACCATAATAGTTACAAAACTTTATGTGAGAAGAACAACCTGGGAAGGTTGACCAAAGAAGGTGAAAGTCCTGTAAACGAAGCATAAAGACTAGGGTATCAAAGAGTACAGCGGGACACGAGAGATCTTGCTGGAACTATAAGGAGGACCATCTCCTAAGGCTAAATACTACTTAGTGACCGATAGTGAACCA Acholeplasma_palmae_Strain_J233_DQ004923 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCCCGTCAAACCACGAAAGTCAGCAATACCCAAAGCCGGTGGCCTAACCGT----AAGGAGGGAGCCGTTTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGA----------G---AAAGGCATTAAAAATGCAACAACCAAATTACTCATCATATTCAGTTTTGAAAGACTA--------------TAAT---------------------------TAATATTTAGTGTTTCTACGGTGGCAGCAAAGCAAGTTATATAAAT--------AACGGGCCTATAGCTCAGGTGGTTAGAGCGCACG-CCTGATAAGCGTGAGGTCGATGGTTCAAGTCCATTTAGGCCCACCATTATTTGGGGCTTTAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAGCGGTTCGATCCCGCTAAGCTCCACCAAAAGAGAT-CTTTGAAAAGTAGATAAA------A------TTCTGTTAAAAGAA-------------------AAGAAATATAGGTTAAGGAACAAAGGGCGCACAGTGAATGCCTTGGCGCTAAGAGCCGATGAAGGACGCAACTAACAGCGAAATTCCATGGGAAGCGGTAAGTACGCGATGATCCATGGGTGTCCGAATGGGGGAACCCACCATGTGGAAGACATGGTATCCAGCAATGGAAGGGAAACGCAGTGAACTGAAATATCTAATTAGCTGCAGGAAAAGAAAGTAAAAACGATTCTGCTAGTAGCGACGAGCGAACGCGGAGGAGCCAGATACTATAATAGTTACAAAACTTTATGTGAGAAGAATAACTTGGGAAGGTTAACCAAAGAAGGTGAAAGTCCTGTAATCGAAGCGTAAAGACTAGAGTATCAGAAAGTACGGCGAGACACGAGAAATCTTGTCGGAA--GATGCGAGGACCATCTCGTAAGGCTAAATACTACTTAGTGACCGATAGTGAACCA Aster_yellows_phytoplasma_watercress_AY665676 ----GTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAGTT--------TAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAGGGCATCTTCTTGTTTTTAAAAGACCT--AGCAATAGGTATGCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGAAAAATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGT-TTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGGTA--AAACCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGTGGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCAT-GTCGCGGTGAATAC---GTTCTCGGGGTTTGTA-CACACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGA----------A---ACAA---------------------------TTATCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTT---TCATTGTAACTTGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTTAAGAT--------------------------------TAAGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGGTGGTTCAAGTCCATTTAGGCCCACCAT--------AACCACA----------AATAGG-------------------------------------CAAAATCTT---AAAAAAGCT-CTTTGAAAAGTAGATAAA------CGAAGG------TTAAAAAAT-------------------CA------------AAGGAACTAAGGGCGCACAGTGGATGCCTTGGCACTAAGAGCCGATGAAGGACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Candidatus_Phytoplasma_vitis_FN562932 ------------------------------------------------ATGCAAGTCGAACGGAGACCCTTCAAA----------AGGTCTTAGTGGCGAACGGGTGAGTAACACGTAAGTAACCTACCTTTAAGACGAGGATAACAATCGGAAACGGTTGCTAAGACTGGATAGGAAACAGAAAGGCATCTTTTTGTTTTTAAAAGACCTTCTTCGGAGGGTATGCTTAAAGAGGGGCTTGCGCCACATTAGTTAGTTGGTGAGGTAAAGGCTTACCAAGATTATGATGTGTAGCTGGACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCGACGCCGCGTGAACGATGAAGTATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAATAGTGGAAAAACTATCTTGACGTTATTCAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAAGACATAGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAGATAAGTCTATAATTTAATTTCAGTGCTTAACGCTGTCTTGTTATAGAAACTGTCTTGACTAGAGTGAGATAGAGGCAAGCGGAATTCCATGTGTAGCGGTAAAATGTGTAAATATATGGAGGAACACCAGAAGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCTGTAAACGATGAGTACTAAGTGTCGGGGT--AACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATACACGAAAAACCTTACCAGGTCTTGACATAC-TCTGCAAAGCTATAGAAATATAGTGGAGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGTTCGTGTCGTGAGATGTTAGGTTAAGTCCTAAAACGAACGCAACCCCTGTCGCTAGTTGCCAGCACGTAATGGTGGGGACTTTAGCGAGACTGCCAATTAAACATTGGAGGAAGGTGGGGATAACGTCAAATCATCATGCCCCTTATGATCTGGGCTACAAACGTGATACAATGGCTATTACAAAGAGTAGCTGAAACGCGAGTTTTTAGCCAATCTCAAAAAGGTAGTCTCAGTACGGATTGAAGTCTGCAACTCGACTTCATGAAGCTGGAATCGCTAGTAATCGCGAATCAGCAT-GTCGCGGTGAATAC---GTTCTCGGGGTTTGTA-CACACCGCCCGTCAAACCACGAAAGTTAGCAATACCCGAAAGCAGTGGCTTAACTTCGAAAGAAGAGGGAGCTGTCTAAGGTAGGGTTGATGATTGGGGTTAAGTCGTAACAAGGTATCCTTACCGGAAGGTGAGGATGG-ATCACCTCCTTTCTAAGGA----------C---ATACATATAAAAA------------------TCATCATCTTCAGTTTTGAAAGACTTAG------GTTAAAATAT---------------------------AAGTTTTT--CTTTTTATAAAA------AAAGTGTTTCTCTTATATAAAAGACCAAAGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGGTGGTTCAAGTCCACTTAGGCCCACC----------AATTTTA----------------------------------------------------------TATCAGGAAAATATTTACTTCGAAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554' -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAT-GTCGCGGTGAATAC---GTTCTCGGGGTTTGTA-CACACCGCCCGTCAAACCACGAAAGTTGGCAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGA----------A---ACAA---------------------------TTATCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTT---TCATTGT{AC}ACTTGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTTAAGAT--------------------------------TAAGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGGTGGTTCAAGTCCATTTAGGCCCACCAT--------AACCACA----------AATAGG-------------------------------------CAAAATCTT---AAAAAAGCT-CTTTGAAAAGTAGATAAA------CGAAGG------TTAAAAAAT-------------------CA------------AAGGAACTAAGGGCGCACAGTGGATGCCTTGGCACTAAGAGCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Hawaiian_sugarcane_Phytoplasma_JN223447 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGGCATCACCTCCTTTCTAAGGA----------A---ACAA---------------------------TTATCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTT---TCATTGTCACTTGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTTAAGAT--------------------------------TAAGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGGTGGTTCAAGTCCATTTAGGCCCACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011 AAGTGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCTTAATACATGCAAGTCGAACGGAAATC--------------TTCGGATTTTAGTGGCGAACGGGTGAGTAACACGTAAGTAACCTGCCTTTAAGACGAGGATAACAATTGGAAACAGTTGCTAAGACTGGATAGGAAATTAGAAGGCATCTTTTAATTTTTAAAAGACCTTTTTCGAAAGGTATACTTAAAGAGGGGCTTGCGGCACATTAGTTAGTTGGTAGGGTAAAAGCCTACCAAGACCATGATGTGTAGCTGGACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAATAGTGGAAAAACTATCTTGACGATATTCAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTGGTAAGTCTATAGTTTAATTTCAGTGCTTAACACTGTTCTGCTATAGAAACTAT-CAGACTAGAGTGAGATAGAGGCAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGAGGCGTA?GCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTG?TAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGGA--AACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTG-TTAATTCGAAGATACACGAAAAACCTTA?CAGGTCTTGACATAC-TCTGCAAAGCTATAGCAATATAGTGGAGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTAAGTC?TAAAACGAGCGCAACCCTTGTCACTAGTTGCCAGCATGTTATGATGGGCACTTTAGTGAGACTGCCAATGAAAAATTGGAGGAAGGTGAGGATCACGTCAAATCATCATGCCCCTTATGATCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGAGTAGCTAAAACGCGAGTTTATAGCCAATCTCATAAAAGCAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCAT-GTCGCGGTGAATAC---GTTCTCGGGGTTTGTA-CACACCGCCCGTCGAACCACGAAAGTTGGTAATACTCAAAAACGGTAGCCTAACTTCTTCGGAAGAGGGAACTGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGA----------AAAGAAAATTTTTTAAA------------------TTTTCATCTTCAGTTTTGAAAGACTTAG------TTC---TAAT--------------------AAGTAGTAAGTTTTT--CTCTTTTAAGAA------AAAG----------------------GAAGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGATGGTTCAAGTCCATTTAGGCCCACC----------AACTGAT--------CAATAAGGTCATCTTT-----------------------------CTGATTCTT--AAAAAAAGTT-CTTTGGAAAGTAGATAAA------C-AAAGTAAAATAATAGAAAT-------------------CA------------AAGGAATTAAGGGCGTACAGTGGATGCCTTGGCACTAAGAGCCGATGAAGGACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192 -------------------------AACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAATC--------------TTCGGATTTTAGTGGCGAACGGGTGAGTAACACGTAAGTAACCTGCCTTTAAGACGAGAATAACAATTGGAAACAGTTGCTAAGACTGGATAGGAAATTAAAAGGCATCTTTTAATTTTTAAAAGACCTTTTTCGAAAGGTATGCTTAAAGAGGGGCTTGCGACACATTAGTTAGTTGGTAGGGTAAAGGCCTACCAAGACTATGATGTGTAGCTGGACTGAGAGGTCGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAATAGTGGAAAAACTATCTTGACGCTATTCAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGTCTATAGTTTAATTTCAGTGCTTAACACTGTTCTGCTATAGAAACTAT-TAGACTAGAGTGAGATAGAGGCAAGCGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGAGGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGGG--AACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATACACGAAAAACCTTACCAGGTCTTGACATAC-TCTGCAAAGCTGTAGCAATACAGTGGAGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTAAGTCCTAAAACGAGCGCAACCCTTATCGCTAGTTGCCAGCATGTCATGATGGGGACTTTAGCGAGACTGCCAATGAAAAATTGGAGGAAGGTGAGGATCACGTCAAATCATCATGCCCCTTATGATCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGAGTAGCTAAAACGCAAGTTCATAGCCAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCAT-GTCGCGGTGAATAC---GTTCTCGGGGTTTGTA-CACACCGCCCGTCAAACCACGAAAGTTGGTAATACTCGAAAACGGTAGCCTAACTTCTTCGGAAGAGGGAACCGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGA----------A-----AATTTTTTAAA------------------TTTTCATCTTCAGTTTTGAAAGACTTAG------TTCTTATTAT---------------------------AAGTTTTT--CTTTTTTAAGAA------AAAAAG--------------------AAGGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGATGGTTCAAGTCCATTTAGGCCCACC----------AACTGAA------------AAGGTCTTCTTT-----------------------------CTTGTTCTT--AAAAAAAGTT-CTTTGAAAAGTAGATAAA------C-AAAGTAAAA-TAAAAAAAC-------------------CA------------AAGGAATAAAGGGCGTACAGTGGATGCCTTGGCACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Russian_potato_purple_top_phytoplasma_EU333399 -------------------------AACGCTGGCGGCGCGCCTAATACATGCAAGTCGAACGGAAGTT--------TAAGCAATTAAACTTTAGTGGCGAACGGGTGAGTAACGCGTAAGCAATCTGCCCCTAAGACGAGGATAACAGTTGGAAACGACTGCTAAGACTGGATAGGAGACAAGAAGGCATCTTCTTGTTTTTAAATGACCT--AGCAATAGGTATGCTTAGGGAGGAGCTTGCGTCACATTAGTTAGTTGGTGGGGTAAAGGCCTACCAAGACTATGATGTGTAGCCGGGCTGAGAGGTTGAACGGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTACGTAAAGTTCTTTTATTAGGGAAGAATAAATGATGGAAAAATCATTCTGACGGTACCTAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTAAATAAGTTTATGGTCTAAGTGCAATGCTCAACATTGTGATGCTATAAAAACTGT-TTAGCTAGAGTAAGATAGAGGCAAGTGGAATTCCATGTGTAGTGGTAAAATGCGTAAATATATGGAGGAACACCAGTAGCGAAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAACGTTGGGTA--AAACCAGTGTTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGGTACCCGAAAAACCTCACCAGGTCTTGACATGCTTCTGCAAAGCTGTAGAAACACAGTGGAGGTTATCAGTTGCACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATTGTTAGTTACCAGCACGTAATGGTGGGGACTTTAGCAAGACTGCCAGTGATAAATTGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGGGTAGCTGAAGCGCAAGTTTTTGGCGAATCTCAAAAAAACAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCAT-GTCGCGGTGAATAC---GTTCTCGGGGTTTGTA-CACACCGCCCGTCAAACCACGAAAGTTGGTAATACCCAAAGCCGGTGGCCTAACTTCGCAAGAAGAGGGAACCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGA----------A---ACAA---------------------------TTATCATCTTCAGTTTTGAGAGACTTAAGAAAGTTTT---TCATTGTAACTTGCTTGCAAATTGTATTTGCAACATTTTAATCTTTTTAAGAT--------------------------------TAAGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGGTGGTTCAAGTCCATTTAGGCCCACCAT--------AACCACA----------AATAGG-------------------------------------CAAAATCTT---AAAAAAGCT-CTTTGAAAAGTAGATAAA------CGAAGG------TTAAAAAAT-------------------CA------------AAGGAACTAAGGGCGCACAGTGGATGCCTTGGCACTAAGAGCCGATGAAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sugarcane_grassy_shoot_phytoplasma_AB243298 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAG------------------------------------------------------------------------------GAAGTTGGAATCGCTAGT-ATCGCGAATCAGAATCGGCGAGGAGAGGATACAGTTCTCGGGGTTTGTATCACACCGCCCGTCAAACCACGAAAGTTGGTAATACTCAAAAACGGTAGCCTAACTTCTTCGGAAGAGGGAACCGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGA--------------ATAATTTTTTAAA------------------TATTCATCTTCAGTTTTGAAAGACTTAG------TTC---TTAT---------------------------AAGTTTTT--CTTTTTTAAGGA------AAAGAA--------------------AATGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGATGGTTCAAGTCCATTTAGGCCCACC----------AACTGAA---------AAAAAGGTCTTTTTT-----------------------------CTAATTCTTAAAAAAAAAGTT-CTTTGAAAAGTAGATAAA------C-AAAGTATTTTTTTAAAAAT-------------------CA------------AAGGAATCAAGGGCGTACAGTGGATGCCTTGGCACTAAGAGCCGAATGAAGGGACGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sugarcane_white_leaf_phytoplasma_AB646271 -AGAGTTTGATCCTGGCTCAGGATAAACGCTGGCGGCGTGCCTAATACATGCAAGTCGAACGGAAATC--------------TTCGGATTTTAGTGGCGAACGGGTGAGTAACACGTAAGCAACCTGCCTTTAAGACGAGGATAACAATTGGAAACAGTTGCTAAGACTGGATAGGAAATAAAAAGGCATCTTTTTATTTTTAAAAGACCTTTTTCGGAAGGTATGCTTAAAGAGGGGCTTGCGTCACATTAGTTAGTTGGCAGGGTAAAAGCCTACCAAGACTATGATGTGTAGCTGGACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGATGAAGTATTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAAAAATAGTGGAAAAACTATCTTGACGATATTCAATGAATAAGCCCCGGCAAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGTCTATAGTTTAATTTCAGTGCTTAACACTGTCCTGCTATAGAAACTAT-TAGACTAGAGTGAGATAGAGGCAAGTGGAATTCCATGTGTAGCGGTAAAATGCGTAAATATATGGAGGAACACCAGAGGCGTAGGCGGCTTGCTGGGTCTTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTACTAAGTGTCGGGAT--TACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGACTCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATACACGAAAAACCTTACCAGGTCTTGACATAC-TCTGCAAAGCTATAGCAATATAGTGGAGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTAAGTCCTAAAACGAGCGCAACCCTTGTCATTAGTTGCCAGCATGTCATGATGGGCACTTTAATGAGACTGCCAATGAAAAATTGGAGGAAGGTGAGGATCACGTCAAATCATCATGCCCCTTATGATCTGGGCTACAAACGTGATACAATGGCTGTTACAAAGAGTAGCTGAAACGTAAGTTTATAGCCAATCTCATAAAAGCAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCAT-GTCGCGGTGAATAC---GTTCTCGGGGTTTGTA-CACACCGCCCGTCAAACCACGAAAGTTGGTAATACTCAAAAACGGTAGCCTAACTTCTTCGGAAGAGGGAACCGTCTAAGGTAGGATCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGA----------A---ATAATTTTTTAAA------------------TATTCATCTTCAGTTTTGAAAGACTTAG------TTC---TTAT---------------------------AAGTTTTT--CTTTTTTAAGGA------AAAGAA--------------------AATGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGATGGTTCAAGTCCATTTAGGCCCACC----------AACTGAA----------AAAAGGTCTTTTTT-----------------------------CTAATTCTT--AAAAAAAGTT-CTTTGAAAAGTAGATAAA------C-AAAGTATTTTTTTAAAAAT-------------------CA------------AAGGAATCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sugarcane_white_leaf_phytoplasma_AY139874 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCC{CT}ACCGGAAGG{AT}GGGGATGG-ATCACCTCCTTTCTAAGGA----------A---ATAATTTTTTAAA------------------TATTCATCTTCAGTTTTGAAAGACTTAG------TTC---TTAT---------------------------AAGTTTTT--CTTTTTTAAGGA------AAAGAA--------------------AATGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGATGGTTCAAGTCCATTTAGGCCCACC----------AACTGAA----------AAAAGGTCTTTT{CT}------------------------------CTAATTCTT--AAAAAAAGTT-CTTTGA{AG}AAG{GT}A{AG}AT{AC}AA------C-AAAGTATTTTTTTAAAAAT-------------------CA------------AAGGAATCAAGGGCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sugarcane_white_leaf_phytoplasma_HQ917068 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGA----------A---ATAATTTTTTAAA------------------TATTCATCTTCAGTTTTGAAAGACTTAG------TTC---TTAT---------------------------AAGTTTTT--CTTTTTTAAGGA------AAAGAA--------------------AATGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGATGGTTCAAGTCCATTTAGGCCCACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sugarcane_white_leaf_phytoplasma_JN223448 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCGTAACAAGGTATCCCTACCGGAAGGCGGGGATGG-ATCACCTCCTTTCTAAGGA----------A---ATAATTTTTTAAA------------------TATTCATCTTCAGTTTTGAAAGACTTAG------TTC---TTAT---------------------------AAGTTTTT--CTTTTTTAAGGA------AAAGAA--------------------AATGGGCCTATAGCTCAGTTGGTTAGAGCACACGCCCTGATAAGCGTGAGGTCGATGGTTCAAGTCCATTTAGGCCCAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Texas_Phoenix_palm_phytoplasma_AF434989 ---AGTTTGATCCTGGCTCAGGATTAACGCTGGCGGCGTGCTTAATACATGCAAGTCGAACGGAAATCTTTTAGAGAAATCTTTTAGATTTTAGTGGCGAACGGGTGAGTAACACGTAAGCAACCTGCCTTTAAGACGAGAATAACAATTGGAAACAGTTGCTAAGGCTGGATAGGAAATAAAAAGGCATCTTTTTATTTTTAAAAGACCTTCTTCGGAGGGTATGCTTAAAGAGGGGCTTGCGTCACATTAGTTAGTTGGTAGGGTAATGGCCTACCAAGACGATGATGTGTAGCTGGACTGAGAGGTTGAACAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTAGGGAATTTTCGGCAATGGAGGAAACTCTGACCGAGCAACGCCGCGTGAACGACGAAGTACTTCGGTATGTAAAGTTCTTTTATTGAAGAAGAAACAATAGTGGAAAAACTATCTTGACGTTATTCAATGAATAAGCCCCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGTGCGTAGGCGGTTTAATAAGTCTCTAGTTTAATTTCAACGCTTAACGTTGTCCTGCTAGAGAAACTGT-TTGACTAGAGTGAGATAGAGGTAAGCGGAATTCCATGTGTAGCGGTAAAATGTGTAAATATATGGAGGAACACCAGAGGCGTAGGCGGCTTACTGGGTCTTTACTGACGCTGATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACTATGAGTACTAAGTGTCGGGGTTAAACTCGGTACTGAAGTTAACACATTAAGTACTCCGCCTGAGTAGTACGTACGCAAGTATGAAACTTAAAGGAATTGACGGGATCCCGCACAAGCGGTGGATCATGTTGTTTAATTCGAAGATACACGAAAAACCTTACCAGGTCTTGACATAC-TCTGCAAAACTATAGAAATATAGTGGAGGTTATCAGGGATACAGGTGGTGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTAAGTTCTAAAACGAGCGCAACCCCTGTCGTTAATTGCCAGCACGTTATGGTGGGGACTTTAGCGAGACTGCCAATGAAAAATTGGAGGAAGGTGGGGATTACGTCAAATCATCATGCCCCTTATGATCTGGGCTACAAACGTGATACAATGGCTATTACAAAGAGTAGCTTAAACGCGAGTTTTTGGCAAATCTCAAAAAAATAGTCTTAGTTCGGATTGAAGTCTGCAACTCGACTTCATGAAGTTGGAATCGCTAGTAATCGCGAATCAGCAT-GTCGCGGTGAATAC---GTTCTCGGGGTTTGTA-CACACCGCCCGTCAAACCACGAAAGTGGACAATACCCGAAAGCGATAGCCTAACTGCGCAAGCAGAGGGAATCGTCTAAGGTAGGGTCGATGATTGGGGTTAAGTCGTAACAAGGTATCCCTACCGGAAGGTGGGGATGG-ATCACCTCCTTTCTAAGGA----------------AATTTTTAAAA------------------TCATCATCTTCAGTTTTGAAAGACTTAAATTAATTTAAAAAAAT---------------------------AAGTTTTT--CTTTTTCATTAATTATTCTTATAGTATTTAATTTTT--------TAAGGGCCTATAGCTCAGTTGGTTAGAGCACACG-CCTGATAAGCGTGAGGTCGGTGGTTCAAGTCCATTTAGGCCCACCAGTCTAAATGAACTGAA-----------------------------------------------------------AATCAAAAAAAAGTT-CTTTGAAAAGTAGATAAA------CAACGTAAATTCTCAAAATAA-------------------TG------------AAGAAAATAAGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; [ The following blocks are output data for analysis step 11728 ] BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_11 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,(Sugarcane_white_leaf_phytoplasma_AB646271,(Sugarcane_white_leaf_phytoplasma_AY139874,(Sugarcane_grassy_shoot_phytoplasma_AB243298,Sugarcane_white_leaf_phytoplasma_HQ917068))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64604] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_6 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,(Sugarcane_white_leaf_phytoplasma_AB646271,(Sugarcane_white_leaf_phytoplasma_HQ917068,(Sugarcane_white_leaf_phytoplasma_AY139874,Sugarcane_grassy_shoot_phytoplasma_AB243298))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64599] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_10 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,(Sugarcane_white_leaf_phytoplasma_AY139874,(Sugarcane_grassy_shoot_phytoplasma_AB243298,(Sugarcane_white_leaf_phytoplasma_AB646271,Sugarcane_white_leaf_phytoplasma_HQ917068))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64603] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_7 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,(Sugarcane_grassy_shoot_phytoplasma_AB243298,(Sugarcane_white_leaf_phytoplasma_AB646271,(Sugarcane_white_leaf_phytoplasma_AY139874,Sugarcane_white_leaf_phytoplasma_HQ917068))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64600] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_2 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,(Sugarcane_grassy_shoot_phytoplasma_AB243298,(Sugarcane_white_leaf_phytoplasma_HQ917068,(Sugarcane_white_leaf_phytoplasma_AY139874,Sugarcane_white_leaf_phytoplasma_AB646271))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64595] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_9 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,(Sugarcane_grassy_shoot_phytoplasma_AB243298,(Sugarcane_white_leaf_phytoplasma_AY139874,(Sugarcane_white_leaf_phytoplasma_AB646271,Sugarcane_white_leaf_phytoplasma_HQ917068))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64602] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_5 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,((Sugarcane_white_leaf_phytoplasma_AY139874,Sugarcane_grassy_shoot_phytoplasma_AB243298),(Sugarcane_white_leaf_phytoplasma_AB646271,Sugarcane_white_leaf_phytoplasma_HQ917068)))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64598] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_3 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,((Sugarcane_white_leaf_phytoplasma_AY139874,Sugarcane_white_leaf_phytoplasma_AB646271),(Sugarcane_grassy_shoot_phytoplasma_AB243298,Sugarcane_white_leaf_phytoplasma_HQ917068)))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64596] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_8 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,(Sugarcane_white_leaf_phytoplasma_AB646271,(Sugarcane_grassy_shoot_phytoplasma_AB243298,(Sugarcane_white_leaf_phytoplasma_AY139874,Sugarcane_white_leaf_phytoplasma_HQ917068))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64601] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_12 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,(Sugarcane_white_leaf_phytoplasma_AY139874,(Sugarcane_white_leaf_phytoplasma_AB646271,(Sugarcane_grassy_shoot_phytoplasma_AB243298,Sugarcane_white_leaf_phytoplasma_HQ917068))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64605] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_4 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,(Sugarcane_white_leaf_phytoplasma_HQ917068,(Sugarcane_white_leaf_phytoplasma_AB646271,(Sugarcane_white_leaf_phytoplasma_AY139874,Sugarcane_grassy_shoot_phytoplasma_AB243298))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64597] END; BEGIN TREES; TITLE Single_Linkage_cluster_analysis; LINK TAXA = TaxaForAnalysisStep11728; TREE Single_Linkage_tree_1 = [&R] (Acholeplasma_palmae_Strain_J233_DQ004923,(Acholeplasma_axanthum_DQ400425,(Candidatus_Phytoplasma_vitis_FN562932,(((Hawaiian_sugarcane_Phytoplasma_JN223447,'Hawaiian sugarcane H87-4094 yellow leaf phytoplasma HQ116554'),(Aster_yellows_phytoplasma_watercress_AY665676,Russian_potato_purple_top_phytoplasma_EU333399)),(Texas_Phoenix_palm_phytoplasma_AF434989,(Malaysia_Bermuda_grass_white_leaf_phytoplasma_EU294011,(Psammotettix_cephalotes_Flower_stunt_phytoplasma_HQ589192,(Sugarcane_white_leaf_phytoplasma_JN223448,(Sugarcane_white_leaf_phytoplasma_HQ917068,(Sugarcane_grassy_shoot_phytoplasma_AB243298,(Sugarcane_white_leaf_phytoplasma_AY139874,Sugarcane_white_leaf_phytoplasma_AB646271))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64594] END;