#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 21, 2026; 0:53 GMT

TreeBASE (cc) 1994-2008

Study reference:
Pinho D.B., Soares D.J., & Pereira O.L. 2014. First report of Gilbertella persicaria
as the cause of soft rot of fruit of Syzygium cumini. Australasian Plant Disease
Notes, 9.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S15860]

[ The following blocks are input data for analysis step 13816 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep13816;
        DIMENSIONS NTAX=31;
        TAXLABELS
            Blakeslea_sinensis_CBS_564.91
            Blakeslea_trispora_CBS_130.59
            Blakeslea_trispora_CBS_137.49
            Blakeslea_trispora_CBS_198.80
            Choanephora_cucurbitarum_CBS_120.25
            Choanephora_cucurbitarum_CBS_150.51
            Choanephora_cucurbitarum_CBS_178.76
            Choanephora_cucurbitarum_CBS_445.72
            Choanephora_cucurbitarum_CBS_674.93
            Choanephora_infundibulifera_CBS_153.51
            Choanephora_infundibulifera_CBS_155.51
            Choanephora_infundibulifera_CBS_155.58
            Gilbertella_hainanensis_CBS_565.91
            Gilbertella_persicaria_CBS_190.32
            Gilbertella_persicaria_CBS_246.59
            Gilbertella_persicaria_CBS_325.71D
            Gilbertella_persicaria_CBS_325.71a
            Gilbertella_persicaria_CBS_403.51
            Gilbertella_persicaria_CBS_421.77
            Gilbertella_persicaria_CBS_442.64
            Gilbertella_persicaria_CBS_532.77
            Gilbertella_persicaria_CBS_785.97
            Gilbertella_persicaria_COAD1728
            Hyphomucor_assamensis_CBS_415.77
            Mucor_fuscus_CBS_230.29
            Mucor_fuscus_CBS_254.48
            Mucor_fuscus_CBS_282.78
            Mucor_fuscus_CBS_313.78
            Mucor_fuscus_CBS_530.77
            Poitrasia_circinans_CBS_153.58
            Poitrasia_circinans_CBS_647.70
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M23759]

	TITLE Gilbertella_persicaria_and_related_taxa_ITS;
	LINK TAXA = TaxaForAnalysisStep13816;
	DIMENSIONS NCHAR=579;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                  10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590 ]
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Blakeslea_sinensis_CBS_564.91              ATCATTAAATAAATAAG-AAGTAAT--TAGGCTC----GTCCT{AG}---TTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTTGCAGCGTTTGAGGAATGTTCTT--{AG}TGCTATATGGGTAGGTATAA-GAAATGTTAACCGAGCTGTAATCAGGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTTT--AAAATGTAACATAG--AGT---AAAATCTATAAAACAACTTTTAACAACGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAA----TTTTTTTTGAATGGTCATGAAGGAAGC--------TACTC-GT-TGGCGACCTTTTAAA-TTGAGTAAGGCCT-GAATTTG-TTTATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGAAC-TTTGTT--GGGGCC
Blakeslea_trispora_CBS_130.59              ATCATTAAATAAATAAG-AAGTAAT--TAGGCTC----GTCCTG---TTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTTACAGCGTTTGAGGGATGTTCTT--GTGCTATATGGGTAGGCATAA-GAAATGTTAACCGAGCTGTAATCAGGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTTT--AAAATGTAACATAG--AGT---AAAATCTATAAAACAACTTTTAACAACGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAA---TTTTTTTTTTGAATGGTCATGAAGGAAGC--------TAACTTGT-TGGCGACCTTTTAAA-TTGAGTAAGGCCT-GAATTTG-TTTATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGAAC-TTTGTT--GGGGCC
Blakeslea_trispora_CBS_137.49              ATCATTAAATAAATAAG-AAGTAAT--TAGGCTC----GTCCTG---TTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTTACAGCGTTTGAGGGATGTTCTT--GTGCTATATGGGTAGGCATAA-GAAATGTTAACCGAGCTGTAATCAGGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTTT--AAAATGTAACATAG--AGT---AAAATCTATAAAACAACTTTTAACAACGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAA-----TTTTTTTTGAATGGTCATGAAGGAAGC--------TAACTTGT-TGGCGACCTTTTAAA-TTGAGTAAGGCCT-GAATTTG-TTTATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGAAC-TTTGTT--GGGGCC
Blakeslea_trispora_CBS_198.80              ATCATTAAATAAATAAG-AAGTAAT--TAGGCTC----GTCCTG---TTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTTACAGCGTTTGAGGGATGTTCTT--GTGCTATATGGGTAGGCATAA-GAAATGTTAACCGAGCTGTAATCAGGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTTT--AAAATGTAACATAG--AGT---AAAATCTATAAAACAACTTTTAACAACGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAA---TTTTTTTTTTGAATGGTCATGAAGGAAGC--------TAACTTGT-TGGCGACCTTTTAAA-TTGAGTAAGGCCT-GAATTTG-TTTATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGAAC-TTTGTT--GGGGCC
Choanephora_cucurbitarum_CBS_120.25        ATCATTAAATAAATAAG-AAGTATT-TCGGGCTT----GTCCTGAT-CTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTCATGGCGTTTGAGGGATGTTCTT--GTGCTATATGGGTAGGCATGA-GGAATGTTAACCGAGCTATGGTCAAGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTAT--AAAATGTAACATAGGTAGT---AATATCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAA---TTTTTTTTTGAATGGTCATGAAGGAAGC--------TAGCAA---TGGCGACCTTTTAAA-TTGAGTAAGGCCT-GAATCTG-TTCATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGGAC-TTTGTT--GGGGCC
Choanephora_cucurbitarum_CBS_150.51        ATCATTAAATAAATAAG-AAGTATT-TCGGGCTT----GTCCTGAT-CTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTCATGGCGTTTGAGGGATGTTCTT--GTGCTATATGGGTAGGCATGA-GGAATGTTAACCGAGCTATGGTCAAGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTAT--AAAATGTAACATAGGTAGT---AATATCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAA---TTTTTTTTTGAATGGTCATGAAGGAAGC--------TAGCAA---TGGCGACCTTTTAAA-TTGAGTAAGGCCT-GAATCTG-TTCATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGGAC-TTTGTT--GGGGCC
Choanephora_cucurbitarum_CBS_178.76        ATCATTAAATAAATAAG-AAGTATT-TCGGGCTT----GTCCTGAT-CTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTCATGGCGTTTGAGGGATGTTCTT--GTGCTATATGGGTAGGCATGA-GAAATGTTAACCGAGCTATGGTCAAGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTAT--AAAATGTAACATAGGTAGT---AATATCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAT---TTTTTTTTTGAATGGTCATGAAGGAAGC--------TAGTAA---TGGCGACCTTTTAAA-TTGAGTAAGGCCT-GAATCTG-TTCATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGGAC-TTTGTT--GGGGCC
Choanephora_cucurbitarum_CBS_445.72        ATCATTAAATAAATAAG-AAGTATT-TCGGGCTT----GTCCTGAT-CTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTCATGGCGTTTGAGGGATGTTCTT--GTGCTATATGGGTAGGCATGA-GAAATGTTAACCGAGCTATGGTCAAGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTAT--AAAATGTAACATAGGTAGT---AATATCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAA---TTTTTTTTTGAATGGTCATGAAGGAAGC--------TAGTAA---TGGCGACCTTTTAAA-TTGAGTAAGGCCT-GAATCTG-TTCATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGGAC-TTTGTT--GGGGCC
Choanephora_cucurbitarum_CBS_674.93        ATCATTAAATAAATAAG-AAGTATT-TCGGGCTT----GTCCTGAT-CTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTCATGGCGTTTGAGGGATGTTCTT--GTGCTATATGGGTAGGCATGA-GGAATGTTAACCGAGCTATGGTCAAGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTAT--AAAATGTAACATAGGTAGT---AATATCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAA---TTTTTTTTTGAATGGTCATGAAGGAAGC--------TAGCAA---TGGCGACCTTTTAAA-TTGAGTAAGGCCT-GAATCTG-TTCATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGGAC-TTTGTT--GGGGCC
Choanephora_infundibulifera_CBS_153.51     ATCATTAAATAAATAAG-AAGTATT-TCGGGCTT----GTCCTGAT-TTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTCATAGTGTTTGAGGGATGTTCTT--ATGCTATATGGGTAGGCATAG-GAAATGTTAACCGAGCTATGGTCAAGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTAT--AAAATGTAACATAGGTAGT---AATATCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAA-TCTTTTTTTTTGAATGGTCATGAAGGAAGC--------TAGTTAAA-TGGCAACCTTTTAAA-TTGAGTAAGGCCT-GAATCTG-TTCATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGGAC-TTTGTT--GGGGCC
Choanephora_infundibulifera_CBS_155.51     ATCATTAAATAAATAAG-AAGTATT-TCGGGCTT----GTCCTGAT-TTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTCATAGTGTTTGAGGGATGTTCTT--ATGCTATATGGGTAGGCATAG-GAAATGTTAACCGAGCTATGGTCAAGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTAT--AAAATGTAACATAGGTAGT---AATATCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAA-TCTTTTTTTTTGAATGGTCATGAAGGAAGC--------TAGTTAAA-TGGCAACCTTTTAAA-TTGAGTAAGGCCT-GAATCTG-TTCATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGGAC-TTTGTT--GGGGCC
Choanephora_infundibulifera_CBS_155.58     ATCATTAAATAAATAAG-AAGTATT-TCGGGCTT----GTCCTGAT-TTACTA----TCTAT---TTTACTGTGAACTGTTTTA-TTTCATAGTGTTTGAGGGATGTTCTT--ATGCTATATGGGTAGGCATAG-GAAATGTTAACCGAGCTATGGTCAAGCTTAGGCTTGGTACCC--TGTT-TATATACTTTCA---ATTGATCAGATTAT--AAAATGTAACATAGGTAGT---AATATCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAA-TCTTTTTTTTTGAATGGTCATGAAGGAAGC--------TAGTTAAA-TGGCAACCTTTTAAA-TTGAGTAAGGCCT-GAATCTG-TTCATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGGAC-TTTGTT--GGGGCC
Gilbertella_hainanensis_CBS_565.91         ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGG--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTT-CTACTATATGGGTAGGTAGGATAGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ATTGATCAG--TATAAATATTGTAACATAGATGGT-AAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTCATGAAAGAAGCTAGTCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGCGACTTGAAC-TTTAAT--GGGGCC
Gilbertella_persicaria_CBS_190.32          ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGG--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTT-CTACTATATGGGTAGGTAGGATAGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ATTGATCAGA-TATAAATATTGTAACATAGATGGT-AAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTCATGAAAGAAGCTAAGCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGTGACTTGAAC-TTTAAT--GGGGCC
Gilbertella_persicaria_CBS_246.59          ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGG--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTT-CTACTATATGGGTAGGTAGGATAGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ATTGATCAGA-TATAAATATTGTAACATAGATGGT-AAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTCATGAAAGAAGCTAAGCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGCGACTTGAAC-TTTAAT--GGGGCC
Gilbertella_persicaria_CBS_325.71D         ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGA--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTT-CTACTATATGGGTAGGTAGGATGGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ACTGATCAGA-TATAAATATTGTAACATAGATGGT-AAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTTATGAAAGAAGCTAAGCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGCGACTTGAAC-TTTAAT--GGGGCC
Gilbertella_persicaria_CBS_325.71a         ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGG--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTT-CTACTATATGGGTAGGTAGGATAGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ATTGATCAG--TATAAATATTGTAACATAGATGGTAAAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTCATGAAAGAAGCTAGTCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGCGACTTGAAC-TTTAATGGGGGGCC
Gilbertella_persicaria_CBS_403.51          ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGG--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTT-CTACTATATGGGTAGGTAGGATAGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ATTGATCAG--TATAAATATTGTAACATAGATGGTAAAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTCATGAAAGAAGCTAGTCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGCGACTTGAAC-TTTAATGGGGGGCC
Gilbertella_persicaria_CBS_421.77          ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGG--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTT-CTACTATATGGGTAGGTAGGATAGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ATTGATCAGA-TATAAATATTGTAACATAGATGGT-AAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTCATGAAAGAAGCTAAGCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGCGACTTGAAC-TTTAAT--GGGGCC
Gilbertella_persicaria_CBS_442.64          ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGG--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTT-CTACTATATGGGTAGGTAGGATAGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ATTGATCAG--TATAAATATTGTAACATAGATGGTAAAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTCATGAAAGAAGCTAGTCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGCGACTTGAAC-TTTAATGGGGGGCC
Gilbertella_persicaria_CBS_532.77          ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGA--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTT-CTACTATATGGGTAGGTAGGATGGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ACTGATCAGA-TATAAATATTGTAACATAGATGGT-AAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTTATGAAAGAAGCTAAGCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGCGACTTGAAC-TTTAAT--GGGGCC
Gilbertella_persicaria_CBS_785.97          ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGG--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTTCCTACTATATGGGTAGGTAGGATAGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ATTGATCAG--TATAAATATTGTAACATAGATGGTAAAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTCATGAAAGAAGCTAGTCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGCGACTTGAAC-TTTAATGGGGGGCC
Gilbertella_persicaria_COAD1728            ATCATTAAATAAATATG------AT-ATAGTCAT----CTTCTGG--CTATTA----TCTAT---TTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTT-CTACTATATGGGTAGGTAGGATAGAATGTTAACCGAGCTGTGGTCAAGCTTAGGCTTGGTACCCAATATTATACAAATTTTCA---ATTGATCAG--TATAAATATTGTAACATAGATGGTAAAAACGTCTATAAAACAACTTTTAACAATGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCACATTCATAA---TTTTGTTGTGAATGGTCATGAAAGAAGCTAGTCTAGTATTAGGT-TGGCGAC-TTTTAAAATATAATAAGGCCT-GAACTTG-TTCATCAAG-CTGAACTTTTTTTTAATATAAACCAAAGTTTTAGCGACTTGAAC-TTTAATGGGGGGCC
Hyphomucor_assamensis_CBS_415.77           ATCATTAAATAATGAAAAAAATAATAGTGGGCTCTCGGGTTCA----TTATTATTTTTTAATCTATTTACTGTGAACTGTATTATTTGCATGGCGCTTGAGAGATGTCTAA--GCATTATATGGATAGATGCTT-GGAATGTTAATCGAGTCATGGTCAAGCTTAGGCTTGGTATCC--TATTAT---TATTTACCAAAAGAATTCAGATTAAAAATATTGTAACATAG--ACCTAAAAAATCTATAAAACAACTTTTAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGTAGCAAAGTGCGATAACTAGTGTGAATTGCATATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCACCTGTTGGTATTCCAACAGGTACGCCTGTTTCAGTATCAAAAACAACCCTCTTTTAAACATGTTTGTGTTTGAAAGGATTTGAAAGTATC--------TCTTTCGG-GAGAGGCTTTTTAAACTA--CTAAGGCCTGGAATTTGTTCTACCT-GCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCAATTTGAACTTTTATT--GGGGCC
Mucor_fuscus_CBS_230.29                    ATCATTAAATAATTAAT-----AAT-TTTGGCTC----GTCCA----TCATTA----TCTA----TTTACTGTGAACTGTATTA-TTGTATGGCGCTTGAGAGATGTCTGG--ACATTATATAGGTAGATGTTC-AGAATGCTAATCGAGCCATAATCAAGCTTAGGCTTGGTACCT--TATTAT---TATTTACCAAAAGAATTCAG--TATTAATATTGTAACATAG--ACCTAAAAAATCTATAAAACAACTTTTAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGTAGCAAAGTGCGATAACTAGTGTGAATTGCATATTCAGTGAATCATCGAGTCTTTGAACGCAACTTGCGCCTTTTGGTATTCCAAAAGGCACGCCTGTTTCAGTATCAAAAACAACCCTCTTTCAAAC-ATTTTTGTTTAAAAGGATTATGAGAG------------TATTTCATGTAAAGACTCTTTAAA-TAT-CTAAGGCCT-GAGTTTG-TTTATCT-GCCTAAACTTTTTTTTAATATAAAGGAAAGCTTTTGTAA-TTGAACTTTTATT--GGGGCC
Mucor_fuscus_CBS_254.48                    ATCATTAAATAATTAAT-----AAT-TTTGGCTC----GTCCA----TCATTA----TCTA----TTTACTGTGAACTGTATTA-TTGTATGGCGCTTGAGAGATGTCTGG--ACATTATATAGGTAGATGTTC-AGAATGCTAATCGAGCCATAATCAAGCTTAGGCTTGGTACCT--TATTAT---TATTTACCAAAAGAATTCAG--TATTAATATTGTAACATAG--ACCTAAAAAATCTATAAAACAACTTTTAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGTAGCAAAGTGCGATAACTAGTGTGAATTGCATATTCAGTGAATCATCGAGTCTTTGAACGCAACTTGCGCCTTTTGGTATTCCAAAAGGCACGCCTGTTTCAGTATCAAAAACAACCCTCTTTCAAAC-ATTTTTGTTTAAAAGGATTATGAGAG------------TATTTCATGTAAAGACTCTTTAAA-TAT-CTAAGGCCT-GAGTTTG-TTTATCT-GCCTAAACTTTTTTTTAATATAAAGGAAAGCTTTTGTAA-TTGAACTTTTATT--GGGGCC
Mucor_fuscus_CBS_282.78                    ATCATTAAATAATTAAT-----AAT-TTTGGCTC----GTCCA----TCATTA----TCTA----TTTACTGTGAACTGTATTA-TTGTATGGCGCTTGAGAGATGTCTGG--ACATTATATAGGTAGATGTTC-AGAATGCTAATCGAGCCATAATCAAGCTTAGGCTTGGTACCT--TATTAT---TATTTACCAAAAGAATTCAG--TATTAATATTGTAACATAG--ACCTAAAAAATCTATAAAACAACTTTTAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGTAGCAAAGTGCGATAACTAGTGTGAATTGCATATTCAGTGAATCATCGAGTCTTTGAACGCAACTTGCGCCTTTTGGTATTCCAAAAGGCACGCCTGTTTCAGTATCAAAAACAACCCTCTTTCAAAC-ATTTTTGTTTAAAAGGATTATGAGAG------------TATTTCATGTAAAGATTCTTTAAA-TAT-CTAAGGCCT-GAGTTTG-TTTATCT-GCCTAAACTTTTTTTTAATATAAAGGAAAGCTTTTGTAA-TTGAACTTTTATT--GGGGCC
Mucor_fuscus_CBS_313.78                    ATCATTAAATAATTAAT-----AAT-TTTGGCTC----GTCCA----TCATTA----TCTA----TTTACTGTGAACTGTATTA-TTGTATGGCGCTTGAGAGATGTCTGG--ACATTATATAGGTAGATGTTC-AGAATGCTAATCGAGCCATAATCAAGCTTAGGCTTGGTACCT--TATTAT---TATTTACCAAAAGAATTCAG--TATTAATATTGTAACATAG--ACCTAAAAAATCTATAAAACAACTTTTAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGTAGCAAAGTGCGATAACTAGTGTGAATTGCATATTCAGTGAATCATCGAGTCTTTGAACGCAACTTGCGCCTTTTGGTATTCCAAAAGGCACGCCTGTTTCAGTATCAAAAACAACCCTCTTTCAAAC-ATTTTTGTTTAAAAGGATTATGAGAG------------TATTTCATGTAAAGATTCTTTAAA-TAT-CTAAGGCCT-GAGTTTG-TTTATCT-GCCTAAACTTTTTTTTAATATAAAGGAAAGCTTTTGTAA-TTGAACTTTTATT--GGGGCC
Mucor_fuscus_CBS_530.77                    ATCATTAAATAATTAAT-----AAT-TTTGGCTC----GTCCA----TCATTA----TCTA----TTTACTGTGAACTGTATTA-TTGTATGGCGCTTGAGAGATGTCTGG--ACATTATATAGGTAGATGTTC-AGAATG{CT}TAATCGAG{CT}CATAATCAAGCTTAGGCTTGGTACCT--TATTAT---TATTTACCAAAAGAATTCAG--TA{CT}TAATATTGTAACATAG--AC{CT}TAAAAAATCTATAAAACAACTTTTAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGTAGCAAAGTGCGATAACTAGTGTGAATTGCATATTCAGTGAATCATCGAGTCTTTGAACGCAACTTGCGCCTTTTGGTATTCCAAAAGGCACGCCTGTTTCAGTATCAAAAACAACCCTCTTTCAAAC-ATTTTTGTTTAAAAGGATTATGAGAG------------TATTTCATGTAAAGATTCTTTAAA-TAT-CTAAGGCCT-GAGTTTG-TTTATCT-GCCTAAACTTTTTTTTAATATAAAGGAAAGCTTTTGTAA-TTGAACTTTTATT--GGGGCC
Poitrasia_circinans_CBS_153.58             ATCATTAAATAAATGAGAAAGTAACTGGGAGCTC-----TTCTGCTCTCATTACTCTTCTAT---TTTACTGTGAACCGTTTTA-TTCCACAACGTTTGAGGAATGTTCTT--ATGCCATAGGGGTAGGCATAT-GAAATGTTAACCGAGTTGTGATCAAGCTTAGGCTTGGTACCC--TGTT-TATATACTTTTATCCATTGATCAGATTAT-AAAAATGTAACATAGGTAGT---AATATCTATAAAACAACTTTTAACAACGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAAGTTTTTTCTTATGAATGGTTATGAAGGAAGCTTTAGC--CCTTGGGCTTGGCAACCTTTTAAA-TTGAGTAAGGCCT-GAATCTGTTTCATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGAAC-TTTGTT--GGGGCC
Poitrasia_circinans_CBS_647.70             ATCATTAAATAAATGAGAAAGTAACTGGGAGCTC-----TTCTGCTCTCATTACTCTTCTAT---TTTACTGTGAACCGTTTTA-TTCCACAACGTTTGAGGAATGTTCTT--ATGCCATAGGGGTAGGCATAT-GAAATGTTAACCGAGTTGTGATCAAGCTTAGGCTTGGTACCC--TGTT-TATATACTTTTATCCATTGATCAGATTAT-AAAAATGTAACATAGGTAGT---AATATCTATAAAACAACTTTTAACAACGGATCTCTTGGCTTTTGCATCGATGAAGAACGTAGCAAATTGCGATAACTAGTGTGAATTGCAAATTCAGTGAATCATCGAGTCTTTGAACGCATCTTGCGCTCATTGGTATTCCAGTGAGCACGCCTGTTTCAGTATCAAAAACAACCCTCATTCAAAAGTTTTTTCTTATGAATGGTTATGAAGGAAGCTTTAGC--CCTTGGGCTTGGCAACCTTTTAAA-TTGAGTAAGGCCT-GAATCTGTTTCATCTAGCCTGAACTTTTTTTTAATATAAAGGAAAGCTCTTGCGACTTGAAC-TTTGTT--GGGGCC
;
END;

[ The following blocks are output data for analysis step 13816 ]
BEGIN TREES;
      TITLE Gilbertella_persicaria_and_related_taxa_ITS;
      LINK TAXA = TaxaForAnalysisStep13816;
      TREE con_50_majrule = [&R] ((Hyphomucor_assamensis_CBS_415.77:0.114748,(Mucor_fuscus_CBS_230.29:0.002617,Mucor_fuscus_CBS_254.48:0.002653,(Mucor_fuscus_CBS_282.78:0.002561,Mucor_fuscus_CBS_313.78:0.00246,Mucor_fuscus_CBS_530.77:0.002588):0.004967):0.09853):0.164404,((Gilbertella_persicaria_CBS_190.32:0.004662,Gilbertella_persicaria_CBS_246.59:0.00242,Gilbertella_persicaria_CBS_421.77:0.002366,(Gilbertella_persicaria_CBS_325.71D:0.002399,Gilbertella_persicaria_CBS_532.77:0.002276):0.01007,(Gilbertella_hainanensis_CBS_565.91:0.002388,Gilbertella_persicaria_CBS_325.71a:0.002307,Gilbertella_persicaria_CBS_403.51:0.002359,Gilbertella_persicaria_CBS_442.64:0.00233,Gilbertella_persicaria_CBS_785.97:0.002238,Gilbertella_persicaria_COAD1728:0.002344):0.006859):0.143845,((Poitrasia_circinans_CBS_153.58:0.00209,Poitrasia_circinans_CBS_647.70:0.00202):0.086739,(Blakeslea_sinensis_CBS_564.91:0.014605,(Blakeslea_trispora_CBS_130.59:0.002462,Blakeslea_trispora_CBS_137.49:0.00244,Blakeslea_trispora_CBS_198.80:0.00255):0.008709):0.03046,((Choanephora_infundibulifera_CBS_153.51:0.002521,Choanephora_infundibulifera_CBS_155.51:0.002404,Choanephora_infundibulifera_CBS_155.58:0.002445):0.017829,(Choanephora_cucurbitarum_CBS_178.76:0.004907,Choanephora_cucurbitarum_CBS_445.72:0.002509,(Choanephora_cucurbitarum_CBS_120.25:0.002421,Choanephora_cucurbitarum_CBS_150.51:0.002433,Choanephora_cucurbitarum_CBS_674.93:0.002372):0.007181):0.011649):0.035266):0.073797):0.164404);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr77149]


END;
BEGIN TREES;
      TITLE Gilbertella_persicaria_and_related_taxa_ITS;
      LINK TAXA = TaxaForAnalysisStep13816;
      TREE con_50_majrule = [&R] ((Hyphomucor_assamensis_CBS_415.77:0.114748,(Mucor_fuscus_CBS_230.29:0.002617,Mucor_fuscus_CBS_254.48:0.002653,(Mucor_fuscus_CBS_282.78:0.002561,Mucor_fuscus_CBS_313.78:0.00246,Mucor_fuscus_CBS_530.77:0.002588)0.92:0.004967)1.00:0.09853)1.00:0.164404,((Gilbertella_persicaria_CBS_190.32:0.004662,Gilbertella_persicaria_CBS_246.59:0.00242,Gilbertella_persicaria_CBS_421.77:0.002366,(Gilbertella_persicaria_CBS_325.71D:0.002399,Gilbertella_persicaria_CBS_532.77:0.002276)0.89:0.01007,(Gilbertella_hainanensis_CBS_565.91:0.002388,Gilbertella_persicaria_CBS_325.71a:0.002307,Gilbertella_persicaria_CBS_403.51:0.002359,Gilbertella_persicaria_CBS_442.64:0.00233,Gilbertella_persicaria_CBS_785.97:0.002238,Gilbertella_persicaria_COAD1728:0.002344)0.82:0.006859)1.00:0.143845,((Poitrasia_circinans_CBS_153.58:0.00209,Poitrasia_circinans_CBS_647.70:0.00202)1.00:0.086739,(Blakeslea_sinensis_CBS_564.91:0.014605,(Blakeslea_trispora_CBS_130.59:0.002462,Blakeslea_trispora_CBS_137.49:0.00244,Blakeslea_trispora_CBS_198.80:0.00255)0.74:0.008709)0.96:0.03046,((Choanephora_infundibulifera_CBS_153.51:0.002521,Choanephora_infundibulifera_CBS_155.51:0.002404,Choanephora_infundibulifera_CBS_155.58:0.002445)1.00:0.017829,(Choanephora_cucurbitarum_CBS_178.76:0.004907,Choanephora_cucurbitarum_CBS_445.72:0.002509,(Choanephora_cucurbitarum_CBS_120.25:0.002421,Choanephora_cucurbitarum_CBS_150.51:0.002433,Choanephora_cucurbitarum_CBS_674.93:0.002372):0.007181)0.97:0.011649)0.86:0.035266)0.99:0.073797)0.91:0.164404);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr77150]


END;