#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 16, 2026; 8:08 GMT TreeBASE (cc) 1994-2008 Study reference: Barta J., Stone J.D., Pech J., Sirova D., Adamec L., Campbell M.A., & Storchova H. 2015. The transcriptome of Utricularia vulgaris, a rootless plant with minimalist genome, reveals alternative splicing and only moderate sequence similarity with Utricularia gibba. BMC Plant Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17158] [ The following blocks are input data for analysis step 15602 ] BEGIN TAXA; TITLE TaxaForAnalysisStep15602; DIMENSIONS NTAX=13; TAXLABELS Arabidopsis_thaliana_EIN2 Dianthus_caryophyllus_EIN2 Genlisea_aurea_EIN2 'Lotus japonicus EIN2_1' 'Lotus japonicus EIN2_2' Petunia_hybrida_EIN2 Populus_trichocarpa_EIN2 Solanum_tuberosum_EIN2 Sorghum_bicolor_EIN2 Utricularia_gibba_EIN2 'Utricularia vulgaris EIN2_1' 'Utricularia vulgaris EIN2_2' Zea_mays_EIN2 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M30230] TITLE Angiosperm_EIN2_align_short; LINK TAXA = TaxaForAnalysisStep15602; DIMENSIONS NCHAR=1361; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana_EIN2 G----TTGGATACTA-CGTCTGTT------ACTAGC-TCGGTCT---A---TGATTTGCCAGAGAACATTCTAATGACGGATCAAGAAATCCGTTCGAGCC-CTCCAGAGGAAAGAGAGTTGGATGTAAAGTACTCTACCTCTCAAGTTAGTAGTCTTAAGGAAGACTCTGATGTAAAGGAACAGTCTGTATTGCAGTCAACAGTGGTTAATGAGGTCAGT-GATAAGGATCTGATTGTTGAAACAAAGATGGCGAAAATTGAACCAATGAGTCCTGTGGAGAAGATTGTTAGCATGGAGAATAACAGCAAGTTTATT-GAAAAGGATGTTGAAGGGGT---TTCATGGGAA---ACAGAAGAAGCTACCAAAGCTGCTCCTACAAGCAACTTTACTGTCGGATCTGATGGTCCTCC------TTCATTCC---GCAGCTTAAGTGGG---GAAGGGGGAAGTGGGACTGGAAGCCTTTCACGGTTGCAAGGTTTGGGACGTGCTGCCCGGAGACACTTATCTGCGATCCTTGATGAATTTTGGGGACATTTATATGATTTTCATGGGCAATTGGTTGCTGAAGCCAGGGCAAAGAAACTAGATCAGCTGTTTGGCAC------TGATCAAAAGTCA---GC---CTCTTCTATG---AAAGCAGATT----CGTTTGGAAAAGACATTAGCAGTGGATATTGCATGTCACCAACTGCGAAGGGAATGGATTCACAGATGACTTCAAGTTTATATGAT-TCACTGAAGCAGCAGAGGACACCGGGAAGTATCGATTCGTTGTATGGATTACAAAGAGGTTC------GTCACCGTCACCGTTGGTCA-ACCGTATGCAGATGTTGGGTGCATATGGTAACACCACTAATAATAATAATGCTTACGAATTGAGTGAGAGAAGATACTCTAGCCTGCGTGCTCCATCATCTTCAGAGGGTTGGGAACACCAACAACCAGCTACAGTTCACGGATACCAGATGAAGTCATATGTAGACAATTTG---GCAAAAGA-AAGGCTTGAAGCCTTAC--AATCCCGTGGAGAGATCCCG-ACATCGAGATCTATGG-CGCTTGGTACATTGAG--CTATACACAGCAACTT---GCTTTAGCCTTGAAACAGAAGTCCCAGAATGGTCTAACCCCTGGACCAGCTCCTGGGTTTGAGAATTTTGCTGGGTCTAGAAGCATATCGCGACAATCTGAAAGATCTTATTACGGTG-TTCCATCTTCTGGCAATACTGATACTGTTGGCGCAGCAGTAGCCAATGAGAAAAAATATAGTAGCATGCCAGATATCTCAGGATTGTCTATGTCCGCAAGGA-ACATGCATTTAC Dianthus_caryophyllus_EIN2 GAGTTCCTTACTGAACCATTCCGACA---CACCAGATGCTAACTGTGATATCAATTTGCCGGACACAATTATGGACACAGTTCAGGAG--CTTTACG-TG----GCTAATAGCGACGAATTGCCCGGTAACTCATCTGCATGCCATCCTAAGCCAAAGCAGTTAGCAAC--TTCTTCGGAATCAGTGGCA--GTCTCTAGCGTGTCAACCAGGATTGAAGACGATACTTT--TCAGAAATCAAGTAACGCGGTAAACAATCGGATGGATG----CTGATGAAAAGACCTTGAGAGTTGA-------GGGTGACTCGCCACCTGAGAAACAAGACGACAGAAATGCGTGGGAA---CCTGGGGAATCATCTAAAGGCATTTCCGAAGTTGATCCATCTACCGCCTCTGATGGTCCAGGA------TCATTCA---GAAGTCTTTCTGG---------------TGGC---GGCAGTCTTTCTAGACTTTCAGGACTCGGCCGTGCAGCAAGACGACAGATGGCTTCGGTCCTTGATGAATTTTGGGGACAACTCTATGATTTCCATGGTCAAATAACTCAAGAAGCAAGGAGTAAGAAACTGGATTTGCTTCTTGGTGC------AGATTCTAAGCCA---TCATCACAATCGGTATCGAAATCAAATCCTGCGGGGAGGGAGTTGGTAATGCAGTC-ACAATCTTTGGGAGGCAGAGTTTCTGGCA-----ATAC-GATTAACTCAAGTTTATATAAC-AGTCCAGATCAGCAGAAGTTGTTCGACAGTATAGAAGCGGCGTATAAGGCTCATAGAGCATCTACTTCGATATGGTCAA-ACCCGCC--A-----C-CAGTT-TCAGACACGTATGTGCAGAACTCTAACCGCAGTC-TTCTTGATTC--AGGGGAGAAGCGGTATCATAGTGTACGTCTCCCGTCATCTTCTGAGAGGTCAGAA---TATCAGGCAGCAACTGTACATGGTTATCAATTGGCATCTTATGCTAATCGTGCC---GCCAAAGA-CAGGTCTGATTA--TGC--ATTTGGCCGACTAGAATCTGTGCCTCAAAAGTCACCG-T-CTTTGGTTCCCAAC--AATTACGAAGAATCTTTTGGTTTTACGTCGGGGCG-GAATTCTGAAAATGGACTTCATGCTGCACAGACTTCGAGCTTTCAAAACTTTCCAGTGCAAAGAAGAAATTTTGACCAATTTGATAGAGCTAGTTACGAATTTTCTGCTGG-----ACCAATTGAAAGGATGAGTAACCAT--AATAATGCCAAACAATATCACAGTTCGCCAGACATTTCTGCACTTTC-TGCACGACTCCGAAATTCCTATTTGT Genlisea_aurea_EIN2 GAAATCCGTTGTCGAGCATCAAGAGACGATGGCGGCGCCGGTTCCCGTTGTGAACTTTCCCGAAACGCTGCTCGATTCTGGGAATGAT-----------------CTGTCAGTGACGACCGTTGCGGAAGACGATAAATTCGAGCTC--GCATCTTC-------GAA--TGCTGATCTCGATCAAACC--------GTG---AGTTCTGAGA-----------CGACTG---TG---GTTCGATCCGCGGATGCTGATGCTCTTCTAACCGGCGAGGCGAAAATGATGGCAGAAAAAAT----ATTGGCTGTTCAAACTGTTAAGGACGAT------------------------TCTGAAAAGACGGGCAGAGATGTTTCGGAA-------AG-----AGCATCGGAAGGTCCAGGTTCGTTGAAAAGCAGCCTCGGTTGTAAGATCGACGACGTAGCCGGTGGTGCGGGAAGCCTTTCGAGAACAGCCGGATTAGGCCGTGCTGCGAGGCGCCAGCTGACGTCCATTCTGGATGATTTTTGGGGTCAGTTTTTCGGCTATCACGGTGAGGTAACCGACGAAGCGAAAGCTAAGAAACTGGATGTTCTAATCGGGATCGATTCCGCATCTTCTGTGTCATCATCATCATCAATG---AAAACCGAAAATCTGAACAAGCAGCAGCCT----ACCAGA------------AGCTCTGATACTGCTTCGGATTCTTTCCAACCGTCGACT-TACTTGAACTATTTCAACCAGCAGAATCA--ATCGC--TCCCG--TCGAGGCA---TACGCAGCG----------------------------------------------TGTAGATGCATACGGGCCGAACAGCGGCTTCAACG-TGGTCGACTT--CGGGGAGAGGCGATATTTCAGCGTGCACGTCCCCTCGTCCTCCGGCGGCTATGAT---CAGCAACCGGCCACGATTCATGGTTACGAGCTGAGGTCGTATCTCGGCCAGTTA---GCGAAAGA-GAAAGGTTACGGTCTGCA-GACGGTTCAACCGGATTCGCCTCCGACTCCCTCGGCTCTGTCGAATTCCGTAAATTCGTATAGCGGCCGATCCT-CCCCGTCTCAGAAGCC--GATCGGCGGCGTGCAACGCAACCTTACT--CCTCCGGGGTTTCACAACGTGCCTGTGGCGAGAAA-----CGCCGCTCTCAGATCGC-AATGGAGCAGTCTTTACTCCCC-GGAATTCGCTGACCGGAGTAGTCACTCTC---CCGATACGAAGAAATATTACAGTTTGCCGGATATATCGGGGCTCCA-TAACTCTCAGCAAGATTCCTCCGTGT 'Lotus japonicus EIN2_1' AAGGACCCCAGAGT---ACTCAGATG---CACCAGTTGCCAGTTTTCATCCTGATCTCTCTGAAACTATCATGGAGCCTGATCTTCAT--------G--TGACTACTGTAAGTGAGACTCATTCAATTACATCATTTCCTTGCTCCCAAACATCTGTTGTGAAGGAATCAGCTTCCACTTCAGAATCAGAGGCAGTGTCAGATGTAATTAGTGAA---ACG-CCTGATATTAGATTGGAAGATGCCAGAAGTTCAGATATGGAAGCACATGCTCCAGTCGAGAAAACTGTAGAAGTTGA----GCAGGATTTAAATGCTGAAAGGGATGATGATGATGTAGACTTGTGGGAA---ACTGAAGAAACATCCAAAGCAGTCTCAGCAAGTGCCCCGTCTTCAGCGTCGGATGGCCCAGCATCATTCAGGAGCC---TTAGTGGGAAAAGTGATGATGGGAGTAATAGCATTGGAAGCCTTTCGAGACTTGCAGGTTTAGGCCGTGGCGCAAGGCGTCAGCTAGCTGCTATTCTTGATGAATTCTGGGGACAACTTTATGATTTCCATGGGAAATTTACCACGGACGCTAAGGCTAAGAGGCTGGATGTTTTACTAGGAGT------AGATTCGAGGCTC---GCCGGCGGCTCTTTGCAGAAAGTGGATTCAAATGCAAAGGAATATTCTGAATA-CCTAATTCCCGTTGGAAGTAGAGCTCCTGATA------CTTCAATGAACTCTGCTCCATATGAC-TCTCCTAGGCAGCATAGGATTCAAAGTAATATGGAGGCTTCCTATGGACTTCAAAGGAACTAT---------TCCTCCT-TACGGGCAAATTCCACCCATTTATTAGATGATTATGCACCGACCTCCTGCCGCAATC-TTGTTGATGC--TGGTGAAAGGCGCTATTCCAGTGTGCGCAATCTGCCATCATCTGGGGTTTGGGAT---TATCAGCCAGCTACTGTACATGGTTACCAGATTGCATCGTATATGAGCCAGGTT---GGTAAAGG-CAGAAATTCTGA-TAACTTAAATGCTCCAATGGAATTGTCTCCCATGAAATCCCCT-TCCATGAGTAGTACAAA-CTACAGGAATTCTAT------ACTTGCTTTGAGGCAAAAGATGCAGAATGGTTTAGGTGCTGGCCAACCCCCTGGCTTTGAAAATGTTTCTACCTCTATGAATTGCCGAATTCCATCTGAGAGGTCCCAATATGACTCTCGCACTTC-GGGATCTACAAATAATGCAGTCAGTTCAG---TTAATACTAAGAAGTACCACAGCTTGCCAGACATTTTAGGATATGCCATTCCTGCCAGGG-ATGCTTACATGT 'Lotus japonicus EIN2_2' AACTACCTTGGAAT---ACTCGGATG---TATCACTTAGAAGTTTTCATCCTGATCTACCTGAAACCATAATGGAACCAGATCCCCAT--------G--CGAACGCTGTGAGGGAGAATCATGCTATTACATCATCAGCTTCC------ACATCAGAGTTGTCTGAGGCAGTTTCAACT--GTATTTA-ATGATATTTCTGATTCTACAGTTGAAGATATT-TCTGATTCTACAGTAGCAGATTCCAAGATGATAAAAATGGAAACAGGGGCCCCCGTTGAGAAGACTCTGGAAGTTGA----AGCAGATGCAAATGCTGAAAGGGATGCTGATGATGGAGACTCGTGGGAA---ACTGAAGAATCATCCAGAGTGGTCTCAGAAAGTTCCCCATCTTTAACATCAGATGGCCCTGCATCATTCAGGAGCA---TTAGTGGGAAAGGTGATGAAGGCGGGAATAGCTTTGGAAGTCTTTCAAGAATAGAAGGCTTAGGGCGTGCAGCAAGACGTCAGTTAGCTGCTGTTCTTGATGAATTCTGGGGGAAGCTTTATGATTTCCATGGACTAGCAACCCATGAAGCAAGGGCTAAGAAAATTGATGATTTGCTAGGACTGGGAGCAGATTCAAGAC------CCACCAGTTCCTTCCAGAGAGTGGATGCATGCGGAAAGGACTATTCTGAATA-CTCACTATCTGTAGGAGGTAGAACTTCCGACA------CTCCAATGAACGCTAGTTCATTTGAC-TCTTCCAAGCAGCCTAGGATGCAAAGTAATTCAGAGTCTCCGTATGGTCTTCAAAGAAGTTCT---------TCCTCTA-GCATGGCAAATCCCATCCAGTTATTGGATGCATATGTACAGA---------GAAATG-TCCTTGATTC--TGGTGAGCGGCGCTATTCCAGTGTGCGCAATCTACATTCATCTCAAGCTTGGGAC---TATCAGCCGGCTACCATACATGGTTATGAGACTGCATCCTATCTTAGCCGGGGT---GGTAATGA-CAGAAATTCTGA-TAACGTAAGTGCTCCAATGCAATTATCATCACTGAAAACCCCT-TCCGTAGGTAATACAAA-CTACAGGGATTCACTT---GCATTTGCTTTAGGGAAAAAGTTGCATAATGGTTCAGGTCTTGGCCAACCACCAGGGTTTGAAAATGT------CTCTAGAAATAGCCAATTGCAATCTGAGAGGTCCCAATATGATTTTTGCTCTTC-TGGACCTGCAGATAATACTGTCAGTTCAG---TTAATACCAAGAAGTACCACAGCTTACCAGACATTTCAGGATACTCCATCCCCCACCGGG-CTGGTTATGTAT Petunia_hybrida_EIN2 AAAATCCTTGGGAAGCCATCCTGATT---TGTCAACTTCAGACCCTGATGAAATCTTGCCCGAATCACTCTTGGATTTTGAGAAGGTC----CATCATTTGACTACCATTGATGAGAGCAAATCTGAAACTACATTTTCAACCCCTTCTTTCAGCTGTCCTGAGGTATCTGCATCAGCAGGAGAAACTGC------GAAAAGTGTTCTCAATGAG----GTGTCTGGTGGTGAATCTGTGGATACCAGGGATTTCAATGCTGCATCTGTGGATGTAGTAGAGAAGACACTCAGAATTGA-------AGGGGACACGCCAACCGACAAGGATGACGATGGAGATTCATGGGAG---CCTGATGACGTACCTAAAGATGTATCTGAGAACACCCAATCTTATACTTCTGATGGTCCGGAATCATTCAAGAGTC---TTAGTGTCAGGTCAGAAGACACAGGGAGTGGTACAGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGTGCAGCTAGGAGGCAGTTAACAGTAGTTCTAGATGAGTTTTGGGGACAGCTTTTTGATTACCATGGGATGCCCACATCACAAGCAAAGTTCAAGAAACTGGATGTAATACTCGGTCTGGATACAAAAGTGGATCCAAAACCTGCCCCAGTGTCATTAAAACTGGAGAA--CAGCAGGGGTGATTCTAATG---CGTATATTCCATCTG--GTAGTGCAAGGGTACCTGAGTCATGGATCAACTCG----AATATATACTCTCCCAAGCAGCAATGTGCATCAGGTGCTCTGGACTCTGGTTATAGAGTCCCGAAGGAGCCAGCTTCA-------------TGGTCTAGCCATATGAAATTATTAGATGCATATGTGCAAAGTTCCAGCGGCAACA-CACTTGACTC--GGGTGAGAGGCGCTATTCCAGCATGCGGATTCCTGCGTCTTCTGCTGGCTATGAT---CAGCAGCCTGCGACTGTGCATGGATATCAGATCTCCGCTTACCTAAGTCAAATT---GCTAAAGG-AAGAGGATCTGA-TTATTTAAATGGGCAACTGGAGTCAGCATCCCCTCGTTCTGTA-TCATCATTGACGTCAAA-CCATGCTGAACCATTA---GCTCGTGCTTTGGGGCAAAAACCTCAGAGTGGAGTGAGTAGTCGAGCACCACCTGGTTTTGGAAGTGTCCCTG---CCCGAAATAACTCGATGCAGCCCGTTAACACTTCTACTGACCTTAGCTCTAC-GGAAAATGCTGAGAGCGTAGCTGGCTCAG---CCAACTCGAAGAAGTATTACAGCTTGCCTGATATATCAGGACGCTA-TGTTCCTCGCCAAGATTCTTCACTCC Populus_trichocarpa_EIN2 GAAATCTGCCGAGAGTTACTCGGATG---TAACTGTTGCAAATGCTGATCCTGATTTGCCTGTGACAATTATGGAGTCGGATCAGGAA----CATCATTTGACTACTATAAAAGAAAATCATTCTGAAATTACATTCTCTAGTCCTGGAACATTCTATGAGGAGGAAACATCACCTATAATAGAGTCAGTATCTCTGTCAGCTGCTATGAATGTGGTCCCT-GGCAGTGAATTGCTTGGTGCCAAGAAGATTGA---TATTGAATCAATGGACTCAGTTGAAAAGACTGTGGATATAGA----TGGTGATTTCCATGCTGAAAAGGAGGACGATGAAGGGGATAGCTGGGAG---CCTGAAGAATCATCCAAAGGGGTTCCTGGAAGCACTTCATCTTTGACATCTGATGGTCCTGGATCATTTAGGAGTC---TTAGTGGTAAAAGTGATGAGGGTGGGAATGGTGCTGGAAGTCTTTCAAGATTAGCAGGGTTGGGTCGTGCTGCAAGACGCCAATTAGCTTCAGTTCTTGATGAGTTTTGGGGACAATTGTATGATTTCCATGGGCAAACAACTCAAGAAGCAAAGACCAAGAAACTGGATGCCCTG---GGGGT------TGATTTGAAGCCT---TC-------TTTGTT--GAAAGTGGACA----CTGCTGGGAAAGAATTTAG---CGGATATTTCTCATCTGTTGGTGGTAGAGCATCTGATTCTCAGATCCATTCAAGTTTGGGCGAC-TCTCCCAATCATTTGAGGGTTCCGAGCAATATCGACTCATCTTATGGAGGTCAGAGGGGACC---------ATCCTCTT-TGTGGTCCAACCACATGCAGTTGATGGATGCATATGCACAAGGTCCCAGCCGCAGTA-TAGCTGACTC--AAGTGAGAGACGGTATTCTAGTGTACACACGCTACCATCTTCTGATGGCCGGTGTAT---TCAGCCAGCTACAGTGCATGGTTATCAGATTGCATCCATCATCAATCAAATT---GCTAAGGA-AAGAGGTTCCAG-TAGCTTAAATGGTCAAATGGACTCACCAGCACCGATATCACCA-TCCTTGGGCCCTAGAAA-CTACAGGGACCCACTT---ACTGTTGCTATGGGGCAAAAATTGCAAAATGGACCAAGCTCTTCACAACCACCAGGATTTCAGAACCTTGCAGTATCTAGAAATAGCACGTTGCAATCTGAAAGACATTATCATGATGTTTACTCTTC-TGGATCTGCTGATGATGCTGGCAAGTCAG---CTAATACGAAGAAGTACCATAGTTTGCCTGACATCGCAGGGCTTGC-TGGTCCTTACAGGGACCTATATATGT Solanum_tuberosum_EIN2 TAAATCCTTGGTAAGCCATCCAGATT---TATCAACTAAAGATCTTGATCAACTCTTGCCAGAATCACTCTTGGATTTTGAAAAGGTC----CATCATTTGGCTACTATTGATGAGAGCAAATCTGAAACAACATTTTCAGCTCCTGCTGTCGGTCATCCTGAGGTATCTGTATCAGCAGGAGCAAGTTCCGGTGTGAAAAGTGTTTGTAATGAG----GTGTCTGGTGTTGTATCTGTGGATACCAGTGTCTTCAATACTGAATCTGTGGATGTCGTAGAGAAGACTCTCAGAATTGA-------AGGGGACATAGCAAATGACAGGGATGA---TGGAGATTCGTGGGAGGAGCCTGAAGAGGCAATCAAAGGAGTATCTGAGAACACTCAATCTTTTATTTCTGATGGTCCGGGGTCATACAAAAGTC---TAAGTGGAAAACTAGAGGACATGGGGAGTGGTACGGGAAGTCTATCAAGATTAGCAGGTCTTGGTCGCGCAGCTAGGAGGCAGTTAACAGAAGCTCTAAATGAGTTTTGGGGGCAGCTTTTTGATTACCATGGCATGGCCACAGCAGAAGCAAAGTCCAAGAAACTGGATATAATACTTGGTCTGGATTCAAAGATGAGTCCAAAACCTGCCCCTGCATCATTAAAAGTGGAAAG--CA----G-----------TG---CGTATATTCCATCGG--GGAGTGCAAGGATACCAGAGTCTCTGATCAACTCG----AATATGTACTCTCCCAAGCAGCAATTTGCGTCAAGCATTGTGGACTCTGCTTATAGAGTCCCAAAGGAGCCTTCTTCGACATCTTCTA-TGTGGTCTAACCATATGAAATTAGTAGGTGCGTACGTGCAAAGTTCCAACAGCAACA-TACTTGACCC--AGGGGAGAGGCGCTATTCTAGTATGCGGATTCCAGCGACTTCTGCTGGCTATGAT---CAGCAGCCTGCCACTGTGCATGGATATCAAATTACTGCTTACCTTAATCAACTT---GCGAAAGA-AAGAGGATCTGA-TTATTTAAATGGGCAACTGGAGTCACCATCTCCTCGTTCTGTA-TCATCACTGACGTCAAA-CTATGCCGAACCATTG---GCTCGTGCTTCGGGGCAAAAACCCCAGAGTGGAGTCAGTAGTCGAGCACCACCTGGTTTTGGAAATGTCCCTGTAGCCCGAAATAATTCCATGCAGCCCAATAACACCTCTATCGACCTTAGCTCTAC-TGAAACTGCTGAAAGCGTGGCTGGCTCAG---CCAACTCTAAGAAGTACTACAGCTTGCCTGATATCTCAGGGCGCTA-TGTTCCTCGCCAAGATTCTTTAGTCT Sorghum_bicolor_EIN2 G----CCTGACAGC--CATCCGGA------GCTGGCCATGGACT---ATATTGATACTTCTGACACTGCTGTAGAATCTGATCACGAC-TCTCAACAATCTACTGCATATGCATCCACTGCTCCTGAAACCTGCCCCTCCCCGTCATTTACTCGTGAGGAGTCAAAATCAGTTGTTG-----CAGTCAAC-TGGCCGGAGCCTTTGGAGAAGGTTCCTACT-TCTACTG---TGATAGAGGAAAGCACAGTAGAAAGTGTGGTCTCTAGGATCACGACTGAAAGAGATGTTTTAGTAGA----AACAGATGTTTTCTCAGGCAAGGATAAGGAAGATACACATGTTTTGGAG---TCTGA-GAAGT---CAAT--TGTTGATAGCACCC-CTTGTGTGTCTGAT--GATGGTCCACCATCTCTTACCTTCA---GCAGGGGAAAAGGCTCAGATGCAGGAAATGGCAATGGTAGTCTCTCGAGGCTATCCGGTTTGGGCCGTGCGGCAAGGAGGCAGCTAGCTGCTACTCTTGATGAGTTCTGGGGGCATCTGTTTGATTACCATGGTAAGCTCACTCAAGAAGCCAGCACAAAAAAGTTTGGTATCTTGCTTGGGAT------AGACCTTAGAACA---CCTACCACAGCTGTA---AGAACGGATAAGCAAGCTGTTGAAATACCCAAG-AGCCCAC-TGGTGAGAGACTCAATGCGGGGGGCA--GCTTTTTTGTCAAGTTCA-GTGGACCTGATGTCCCCTAAGAAT-----GAGACATCGAATTTGGAACTTGCA-TATGGGCTTCAGAGGGGACCGGCCATGGGATTGTCAA-GCTGGTCTCAGGGTATGCAGCTACCAAACACACAGCTGCAGAGCTCAAGCAACAGCC-TACTTGAGCA--AAGTGCAAGATTAAACTCAAATTTTAGTGCGCCATCTTATTCAGACAACAATCAATTCTACCAACCTGCAACAATTCATGGGTACCAGCTCACATCTTACTTGAAACAGATGAATGCCAGCAG-AAACCCTTACTC-TAGC--ATGCCACTGGACCCACAGCG-GCTTCCAAAATCAT-----CTGTGTCTGCTGTG--CCAACCTATGTTGATT---CCATGATGAATGCTC--GTAATCATAATCTGCTTGCTTCACTGGGT--GCTACTCCTTCACAGATTCCTGCAACATCCCGTGTAGGCTCAATGATGCCTGAAAGATCGTATTACGATCCTTCCACTGT-TGATGGGAATGAAAATTCTGGTTCGCCTG---CTTACTCAAAAAAGTACCACAGCTCACCTGATATGTCTGGAATA---ATCGCTGCAAGTAGAGCTGCACTGTT Utricularia_gibba_EIN2 GAAATCTATTACAGAACGTCAAGCTA---TATCAGTTCCAGGCCCTGTTCTGAATTTGCCTGAATCATTGCTTGATTTTGACAGCGAT-----------------CTTCCATTGACTACAATTCAGGATAG---TAAATGTGACAGC--ACATCCTCTGCAGCAGACAAAGTTAAGCTTGACGAATCA--------GCGTTCAGTTCAGAAA-----------CTCTTA---TGAAAGTTGACTTGCCAACTACTGA--AAGCT-TAATAACCGATACAAAGAGGATGTTGAGCATGGA----ATCTGATGTTCAAACTGGTAAAGATGATGAGATGGG---TCCATTGGAA---CCGGAAGAGCTAGACAAAGCTGTTTCTGAAGAAAATCAGCCTTCAACATTAGAAGCTTCACGATCATTTAAAAGCT--CTAG-TGGTGCAATTGATGATGTAGGCAGTGGTACAGGAAGCCTCTCAAGGCTAGCTGGATTAGGTCGCTCTGCAAGACGGCAGTTAACTGCCTTTCTAGATGAGTTTTGGGGACAACTTTTTAGTTATCATGGTGAAGCCACAGAGGAAGCCAAGGAAAAGAAATTGCATGTTCTTTTAGGTTTGGATTTTGGAATAAGTACGAAAGTGTCTTCATCTGTT---AAAATGGACACTATCAGC---CATCAGCCT----ACTGGATATACTCATGTTAATGCTGGGACGGCATCAGATCCTCTCCAATCATCAAGT-TACCTCTGTTCTTTAAATCAACAGCTTGACCAACGAGGTGCTGGATCACCTCACGGTATGCAGAAAAGGTCCCCA------------A-CCGTCTCTAATCCAATGGGTTTTTTCGATTCATACGGGCAAGACAGCAGCTCCAGTA-TGGCTGACAT--GATGGAGAGGCGCTATTCTAGTTTACGCTTTCTCTCATCTTCTGATGGTTATGAT---CAACAGCCGGCTACTGTGCATGGTTATGATATGAGTTCATACCTGAGTCAACTT---GCGAAAGAAGGAAGCTGTCTCACATCA-AAGGG-TCAACCAGACACAAGCTCCAAACCTTCAGTAATGCTTAACCCTGTGAACCCATACGGCAGACAATC-------GTCTCATAAACC--AGTCAGTGGACTGC---GTAATCAGACA--CCTCCGGGGTTTCATAATGTACCTGTTGCCCGTAATAATGCATTGAAATCTGAAAGATACTTGAATGATCTTTACTCCCA-TGAAGCTGATGGTCGTACTACTGATCCTT---CTGACGTGAAAAAGTTTCACAGCTTGCCTAGCATTTCACGACTTTA-TAGTCCTCAAAGGGATTCGTCATTGC 'Utricularia vulgaris EIN2_1' G-AATCCATTACGGAACTTCAAGATG---TATCAATTACAGGCCCTGTTCTGAATTTTCCTGAAAAAATGCTTGATTTTGACAGTGAT-----------------CTTCCATTGAGTACAATTCCGGATAG---TAAATGTGACGCC--ACTTCTGAAACGGACAAAGTTTTTAGTCTTGATTATTCA--------GTGGTCAGTTCAGAAA-----------CTCTTG---CAAAAGTTGACTTGCCAGATGCTG--GCAGCT-TAATAGCCGAGACGAAGAGGATGCTGAGCATGGA----ATTAGATATTCAAGCTGATAAAGATGATGATACAAG---TCCCTTGGAA---CCTGAACAGTTAGACAAAGCTGTTTCTGAGGCAAATCAGTCTTCAACATTAGAAGTTCCAGGATCATTTAAAAGCT--CTAG-TGGTGGAACTGATGATATAGGGAGTAGTACTGGAAGCCTCTCGAGATTAACTGGATTAGGCCGCTCTGCAAGGCGGCAGTTAACTGCCATTGTAGATGAGTTTTGGGGGCAACTTTTTGGTTATCATGGCGAAGCAACAGATGAAGCCAAAGCAAGGAAATTATATGTTCTTATAGGAGCAGATTTCGGCATATATCTGAAATCATCATCATCTATC---AAAATGGAGAATATCAGC---CAGCTTCCT----ACTGGATATGTTAATGCCAATGCTGGTACTCCACCAGATCCTCTCCAATCATCAAGT-TACTTCAGTTCTTCAAATCAGCAGCTTGGTCGACGGGGTCCTGGATCACCCCACGATATGCAGCAAAG---ACCA---------TCAG-TTATTGCTAAGCCGATGGGTTTTCTCGATTCGTATTTGCAAAACAGGAGCTTCAATA-CTAGTGACAT--TATGGAAAGGCGCTATTTTAGTTTACACACTCCATCTTCT---GATGTTTATGAT---CAACAGCCTGCTACTATACATGGTTATGACATGAGTTCATGCCTGGATCAACTT---GCGAAAC--GA---GTTTCG--CCAAA-AAC---TCAGCCAGATTCAAGCTCCACCCCTTCGA---TGATAAACTCGGTGAATTCGTATGGCAGACAATC-------GTCTAATAAGCC--ACTCAGCGGATTGC---GTTATCACACA--CCCCCTGGATTTCACAATGTACCTGTGGCTCGTAATATTGCACCGAACTCTGAAAGATACCTGAATGATCGCTACACCTC-TGAAGTTGAGCACAGTACTATTAACCCGT---CTGATGTGAAGAAGTTTCACAGCTTGCCTAGTATTTCACGACTATA-TAGTCCTCAAAGGGATTCTTCAATGC 'Utricularia vulgaris EIN2_2' GAAATCCATTACAGAACATCAAGACA---TGACAATTCCAGGCCCTGTTCTAAATTTGCCTGAAACACTGCTCGATTTTGATAGCAAT-----------------CTTCAGTTGACTACAATTCATGATAG---AAAATATGGCAGA--ACATCTCCTGAGATGGAAAAAGTTAATCTTGATGAATCA--------GCAGTCAGTTCAAAAA-----------TTCCTG---CTAAGGTTGACTTGCCAGATGCCG--GCAGCT-TAATAACCGAGGCCATGACATTGTTGAGCATGGA----ATCAAATGTTCAGGCTGTTAAAGATGATGATGTG------GCCTTGGAA---CCTGAAGAGTTAAGCAAAGCTGAGTCTGAGGGAAATCAGTTTTCAACTTTAGAAGGTTCAGGATCATTTAAAAGCT--CTGG-TGGTGGAAATGAGGATCCAGGCAGTAGTGCAGGAAGCCTCTCAAGATTATGTGGATTAGGTCGTTCTGCAAGGCGGCAGTTTACTGCCATTCTAGATGAGTTTTGGGGCCAACATTTTGGGTATCATGGTGAAGCTACTGAGGACGCCAAAGAAAAGAAATTAGATGTTCTATTAGGTGTGGATTTTGGAATAAGTCCAAAGCCGTTCTCATCTGTT---AAATTGGAAAATACCAGC---CAGCTGCCT----ACTGGATATACTCTTGTCAATGCTGGGACTGCATCAGATCCTCTCCAGTCATCA----------------------------CTTGGTGAACGGGGTGTTGGATCATCCCACGATTTGCAGCAAAGGTCGCCA---------TCAC-TTGTCCCTAAGCCGATGGGTTTTTTCGATTCATATGGGCAAAACAGGAACTTCAATA-TGGTTGACAC--TATGGAGAGACGCTATTTTAGTTTACGCACTCCCTCATCTTCTGATGTTTATGAT---CAACAACCTGCGACTGTGCATGGTTATGATATGAGTTCGTACCTGGGTCAACTT---GCACAAGA-AAGGGGTGGTGTTTTGCC-AAATAGTCAACCAGATTCAAGCTCCAACCCTTCATTGATGTTAAATCCTGTGAATTCATATGGTAGACAATT-------GTCTCATAAGCC--ACTCAGTGGACTTC---GTAATCAGGCA--CCCCCAGGGTTTCATAATGTACCTGCGGCTCGTAATAGTGCATTGAAATCTGAGAGATATTTGAATGATCTTTACGCCTT-TGAAGCCGAGGATCGTATCAATAGCCCTT---CTGATGTGAAGAAGTTTCACAGCTTGCCTAGCATTTCACGACTTTA-TAGTCCTCAAAGGGATCCTTCAATGT Zea_mays_EIN2 G----CCTGACAGC--CATCCGGA------ACTGGCCTTGGACT---ATATTGATACTTCTGACACTGCTGTAGAATCTGATCACGAC-TCTCAACAATCTACTGCTTATGCATCCACTGCTCCTGAAACCTGCTCCTCCCCGTCGTTTACTCGCGAGGAGTCAAAATCAGTTGTTG-----CAGTCAAC-TGGCCGGAGCCTTTGGAGAAGGTTCCTACT-TCTACTG---TGATGGAGGAAAGCACAGTAGAAAATGTGGTCTCTAGGATCACGACTGAAAGAGATGTTTTAGTAGA----AACAGATGTTGTCTCGGGCAAGGATAAGGAAGATATCCGTACTTTGGAG---TCTGA-GAAGT---CAAT--TGTTGATAGCACCC-CATATGTGTCTGAT--GACGGTCCGCCATCCCTTACTTTCA---GCAGGGGAAAGGGCTCAGATGCAGGAAATGGCAGTGGTAGTCTCTCAAGGTTATCTGGTTTGGGCCGTGCAGCAAGGAGACAGCTAGCTGCTACTCTTGATGAGTTCTGGGGGCATCTGTTTGATTACCATGGTAAGCTCACTCAAGAAGCTAGCACCAAAAAGTTTGGTATCTTGCTTGGGAT------AGACCTTAGAACA---CCTAGCACATCTGTA---AGAACGGATAAACAAGCTGCTGAAATACTTAAG-AGCCCAC-TGGTGAGAGACTCAATGCGGGGGGCA--GCTTTTTTGTCAAGCTCA-GTGGACATGATGTCCCCTAAGAAT-----GAAACGTCGAATTTGGAACTTGCA-TATGGGCTTCAGAGGGGACCTGGCATGGGATTGTCAA-GCTGGTCTCAGGGTATGCAGCTACCAAATACACAGCTGCAGAGCTCAAGCAATAGCC-TACTTGAGCA--GAGTGCAAGATTAAACTCAAATTTTAGTTC---ATCTTATTCAGACAACAATCAGTTCTACCAACCTGCAACAATTCATGGATACCAGCTCACATCTTACCTGAAACAGATGAATGCCAGCCC-AAGCCTTTACTC-TAGC--ATGCCGCTGGACCCACAACG-GCTTCCAAAATCAT-----CTGTGTCTGCTGTG--CCAAACTATGCTGATT---CCATGATGCATGCTC--GTAATCATAACCTGCTTGCTTCACTGGGT--GGTACTACTACACAGCTTCCTGCAACATCCCGCGTAGGCTCAATGATGCCTGAAAGATCGTATTATGATCCTTCCAGCGT-TGATGGGAATGAAAACGCTGGTTCACCTG---CTTACTCAAAAAAGTACCACAGCTCACCTGATATGTCTGGAATA---ATCGCTGCAAGTAGAGCTGCACTCTT ; END; [ The following blocks are output data for analysis step 15602 ] BEGIN TREES; TITLE Angiosperms_EIN2_MP_ML_final; LINK TAXA = TaxaForAnalysisStep15602; TREE MajRule = [&R] ((Zea_mays_EIN2:8.0,(Arabidopsis_thaliana_EIN2:7.0,(Dianthus_caryophyllus_EIN2:6.0,((('Lotus japonicus EIN2_1':1.0,'Lotus japonicus EIN2_2':1.0):1.0,Populus_trichocarpa_EIN2:2.0):3.0,((Petunia_hybrida_EIN2:1.0,Solanum_tuberosum_EIN2:1.0):3.0,(Genlisea_aurea_EIN2:3.0,('Utricularia vulgaris EIN2_1':2.0,('Utricularia vulgaris EIN2_2':1.0,Utricularia_gibba_EIN2:1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0):1.0,Sorghum_bicolor_EIN2:9.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr85832] END;