#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 16, 2026; 8:51 GMT TreeBASE (cc) 1994-2008 Study reference: Rothfels C.J., Li F., Sigel E.M., Huiet L., Larsson A., Burge D.O., Ruhsam M., Deyholos M., Soltis D., Stewart C., Shaw S.W., Pokorny L., Chen T., Depamphilis C.W., Degironimo L., Chen L., Wei X., Sun X., Korall P., Stevenson D., Graham S.W., Wong G.K., & Pryer K. 2015. The evolutionary history of ferns inferred from 25 low-copy nuclear genes. American Journal of Botany, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17594] [ The following blocks are input data for analysis step 16117 ] BEGIN TAXA; TITLE TaxaForAnalysisStep16117; DIMENSIONS NTAX=76; TAXLABELS Adiantum_aleuticum_WCLG Adiantum_raddianum_BMJR Alsophila_spinulosa_GANB Amborella_trichopoda_scaffold00079.32 Anemia_tomentosa_CQPW Angiopteris_evecta_NHCM Aquilegia_coerula_Aquca_00292.1 Arabidopsis_thaliana_AT1G49140 Argyrochosma_nivea_XDDT Asplenium_nidus_PSKY Asplenium_platyneuron_KJZG 'Athyrium filix-femina URCP' Athyrium_sp_AFPO Azolla_caroliniana_cf_CVEG Blechnum_spicant_VITX Bolbitis_repanda_JBLI Botrypus_virginianus_BEGM Crepidomanes_venosum Cryptomeria_japonica_DSXO Culcita_macrocarpa_PNZO Cystopteris_fragilis_LHLE Cystopteris_protrusa_YOWV Cystopteris_reevesiana_RICC Cystopteris_sp_XXHP Cystopteris_utahensis_HNDZ Davallia_fejeensis_OQWW Dennstaedtia_davallioides_MTGC Deparia_lobatocrenata_FCHS Didymochlaena_truncatula_RFRB Diplazium_wichurae_UFJN Dipteris_conjugata_MEKP Encephalartos_barteri_GNQG Equisetum_diffusum_CAPN Equisetum_hyemale_JVSZ Gaga_arizonica_DCDT Gymnocarpium_dryopteris_HEGQ Homalosorus_pycnocarpos_OCZL Hymenophyllum_bivalve_QIAD Hymenophyllum_cupressiforme_TRPJ Leucostegia_immersa_WGTU Lindsaea_linearis_NOKI Lindsaea_microphylla_YIXP Lygodium_japonicum_PBUU Myriopteris_rufa_GSXD Nephrolepis_exaltata_NWWI Notholaena_montieliae_YCKE Onoclea_sensibilis_HTFH Ophioglossum_sp_QHVS Osmunda_sp_UOMY Parahemionitis_cordata_ZXJO Peperomia_fraseri_XSZI Phlebodium_pseudoaureum_ZQYU Phymatosorus_grossus_ORJE Pilularia_globulifera_KIIX Pityrogramma_trifoliata_UJTT Plagiogyria_japonica_UWOD Pleopeltis_polypodioides_UJWU Polypodium_amorphum_YLJA Polypodium_glycyrrhiza_CJNT Polypodium_hesperium_B_IXLH Polypodium_hesperium_GYFU Polystichum_acrostichoides_FQGQ Psilotum_nudum_QVMR Pteridium_aquilinum_Pt_Contig4243 Pteris_ensiformis_FLTD Pteris_vittata_POPJ Sceptridium_dissectum_EEAQ Sticherus_lobatus_XDVM Thelypteris_acuminata_MROH Thyrsopteris_elegans_EWXK Tmesipteris_parva_ALVQ Vittaria_appalachiana_NDUV Vittaria_lineata_SKYV Woodsia_ilvensis_YQEC Woodsia_scopulina_YJJY Zea_mays_GRMZM2G173277_T02 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M31281] TITLE Ferns_NDUFS6; LINK TAXA = TaxaForAnalysisStep16117; DIMENSIONS NCHAR=396; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Adiantum_aleuticum_WCLG ATGGGATTCAAG---GGC---GTGAAGTTCGACGAGGCGCCGCCAGAGGACTTCGATCCTGCGGACCCCTACAAGGACCCGGTGGCATTCCTGGAGATGCGAGAGCACATTGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGCGAGCGTGTGCGCCAATGCTACCGCCGCGAGGGCGTTAACCACCTTCAGAACTGCCGTACAGTTGTTCGTCACTACTTGGAATCACTCAAGGGCATTGGCTGGGGTAAGGAGG-------------------------------------------------------------------------------------------------------------------------------- Adiantum_raddianum_BMJR ----------------------------------------------------------------------------------TGGCATTCCTGGAGATGCGAGAGCACATTGTGCGCGAGAAGTGGGTGGCCATTGAGCGCGCCAAGATTTTGCGTGAACGTGTGCGCCAATGCTATCGTCGTGAGGGCGTTAACCACCTTCAGAACTGCCGTACCACTGTTCTTCAATACTTGGAATCTCTCAAGGGCGTTGGCTGGGGAAAGGAGGGCCGCCCTGCCTATGCCCACGA---------------------------------------------------------------------------------------------------------- Alsophila_spinulosa_GANB ATGGGGTTTAAG---GGC---GTGAAGTTCGACGAGGCGCCCCCGGACGATTTCGATCCGGCGGATCCCTACAAGGACCCGGTGGCGTTTCTGGAGATGCGGGAGCATGTGGTTCGGGAGAAGTGGGTGGCCATCGAGCGCGCCAAGATCTTGCGGGAGCGCGTTCAGCAGTGCTACCGCCGGGAGGGCGTGAACCACCTCCAGAACTGCCGTACCGCCGTCCGCCAGTACTTGGAATCTCTCAAGGGCGTCGGCTGGGGGAAGGAGGGCCGC?--------------------------------CCCGCCACTCCACCCCCGCCACTGCCCTCCGCAAGGGCTTCTTAA--------------------------------------------- Amborella_trichopoda_scaffold00079.32 ATGGTTCGGAAGGCGACT---GTTGAGTTCGATGAGGGACCTCCTGATGACTTCGACCCCAACAACCCCTATGCCGACCCTGTGGCCATGTTAGAGTACAGGGAGCACCTTGTGAGAGAGAAATGGATCCAAATTGAGACGGCTAAGATCTTGAGAGAGAAACTCAAGTGGTGCTATCGCGTAGAGGGGGTGAACCACCTTCAGAAGTGCAGGCACCTCGTCCAACAATACCTCGATGCCACACGTGGGGTTGGCTGGAACAAAGAGAATAGACCTCCTGGTCTTCAT---------------------------------------------GTTTTTCTAGCTGGAATTAGGTATGGGATGGTTGGTTGTTGA--------------------- Anemia_tomentosa_CQPW ATGGTTTTCAAG---GGC---GTGAAGTTTGACGAGGGCCCCCCCGAGGACTTCGACCCGCAGGATCCTCGCAAGGACCCCGTGGCCTACCTGGAGATGCGCGAGTACTTGGTTCGCGAGAAGTGGGTGCAGATCGAGAAGGCCAAGATACTGCGCGAGCGTGTCCGCAATTGCTACCGCCGTGAGGGCGTCAACCACCTTCAGAAATGCCGCAAGGCAGTGCGCCAGTACCTCGCCTCGCTCAAGGACGTGGGATGGGGCAAAGATGGACGCCCTGCCTGGGCCAAC---------------------------------------------AACATCGAGGAGTGA------------------------------------------------ Angiopteris_evecta_NHCM ---------------------------------------CCCCCTGATGACTTCGATCCCCAGCATCCCTACAAGGATCCCATTGCGATGCTCGAGCAGCGGGAGCACGTCGTCCGAGAAAAGCTGATCGCCATCGAGACGGCGAAAATCCTCCGAGAAAGGGTGAAGCAATGCTACAGGCGGGAAGGCGTGAACCATCTCCAAAACTGCAGGCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Aquilegia_coerula_Aquca_00292.1 ATGGGAAGGAAGAAGACA---GTGGAATTCGATGAAGGACCACCAGATGATTTCGATCCAAACAATCCATACAAAGATCCAGTAGCAATGTTAGAAATGAGAGAACATTTAGTTCGAGAGAAATGGATTCAAATCGAAACAGCTAAGATTTTAGGGGAAAAGTTGAAATGGTGTTATCGAATTGAAGGTGTTAATCATCTACAGAAATGCAAACATCTTGTTCAACAATATCTTGATTCAACTCGTGGTGTTGGTTGGGGTAAAGATCATCGTCCTACTTGGATGCATGGTCCTAAG------------------------------------GAGGCTGCGGCAGAAGTCGCTGAGTGA------------------------------------ Arabidopsis_thaliana_AT1G49140 ATGGGGAGGAAGAAGGGATTGCCGGAGTTCGAAGAGTCGGCGCCGGATGGATTCGATCCTGAGAATCCGTACAAGGATCCGGTTGCGATGGTGGAGATGAGAGAACACATTGTTCGTGAGAAATGGATCCATATCGAGAAGGCTAAGATCTTACGTGAGAAGGTCAAATGGTGTTACCGCGTCGAAGGCGTTAACCATTACCAGAAGTGTCGTCATCTTGTTCAGCAGTATCTCGATGCCACTCGCGGCGTTGGTTGGGGCAAAGACCACCGTCCTATCTCTCTTCACGGTCCTAAG------------------------------------CCAGTAGCTGTTGAAGAAGCTGAATGA------------------------------------ Argyrochosma_nivea_XDDT ATGGGATTCAAG---GGC---GTGAAGTTCGACGAGGCGCCGCCAGAGGACTTCGATCCGGCGGACCCCTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACATTGTGCGTGAGAAGTGGGTGGCCATTGAGCGTGCCAAGATTTTGCGGGAGCGTGTGCGCCAATGCTACCGTCGCGAGGGCGTTAACCACCTTCAGAACTGCCGTACCTCTGTTCGCCAGTACCTGGAATCTCTCAAGGGCGTTGGCTGGGGCAAGGACGGCCGCCCTGCCTATGCCCACGACCCTGAATCCACCTGGCCTGCTACCCCTCC---------------------------------------------------------------------------- Asplenium_nidus_PSKY ATGGGCTTCAAG---GGC---GTGAAATTCGACGAGGTGCCTCCTGACGACTTCGATCCGGCGGACCCTTACAAGGACCCGGTGGCCTTCCTGGAGATGCGAGAGCACATCGTGCGTGAGAAGTGGGTAGCCATTGAGCGTTCGAAGATCTTGCGCGAGCGGGTACGGCAGTGCTACCGCCGTGAGGGTGTCAATCATCTTCAGAATTGCCGCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Asplenium_platyneuron_KJZG ATGGGCTTCAAG---GGC---GTGAAATTCGACGAGGCGCCTCCTGACGACTTCGACCCGGCAGACCCTTACAAGGACCCAGTGGCCTTCCTGGAGATGCGAGAGCACATCGTGCGCGAGAAGTGGGTAGCCATTGAGCGTGCAAAGATCTTGCGTGAGCGTGTGCGTCAGTGCTACCGCCGTGAGGGTGTCAATCATCTTCAGAATTGCCGCACAGCTGTGCGCCAGTATCTGGAATCTCTCAAGGGCATCGGGTGGGGCAAGGACGGCCGGCCCGCCTACGCACATGACCCTCTTTCCACTTGGCCTGCAACACCGCCCCCACCCCCCCCTTTCAAAGCTTCCTCTTGA--------------------------------------------- 'Athyrium filix-femina URCP' ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGAAGACTTCGATCCGGCGGATCCTTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCAATCGCGCGCTCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGTCGCTCGGCAGTGCGGCAGTACTTGGAATCCCTCAAGGGCGTGGGGTGGGG---------------------------------------------------------------------------------------------------------------------------------------- Athyrium_sp_AFPO ---------------GGC---GTGAAATTTGACGAGGCGCCGCCTGAAGACTTCGATCCGGCTGATCCTTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCAATCGAGCGCTCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGTCGCTCGGCAGTGCGCCAGTACTTGGAATCCCTCAAGGGCGTGGGGTGGGGCAAGGAGGGCCGCCCCTCCTATGCCCACGATCCTCTTTCCACTTGGCCTGCAACACCGCCCCCGCCCCCCCCTTAA------------------------------------------------------------ Azolla_caroliniana_cf_CVEG ---------------------------------------------------------------------------------------------------------------------------TGGGTAGCGATCGAGAGGTCCAAGATCCTCCGGGAACGCGTCCGCAGGTGCTACCGCGAAGAAGGCGTGAACCACCTCCAGAATTGCCGGGTCGCGGTCCGCCGCTACCTCGAGTCCCTCAAAGGCGTGGGATGGGGTAAGGAAGGAAGGCCTGCATATGCCCATGATCCC------------------------------------------------------------------------------------------------------ Blechnum_spicant_VITX ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGAAGACTTCGATCCGGCGGATCCTTACAAGGACCCGGTGGCGTTCCTGGAAATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCTATCGAGCGCGCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGTCGCACAGCAGTGCACCAGTACTTGGAATCCCTCAAGGGCGTGGGGTGGGGCAAGGAGGGCCGCCCCTCCTATGCCCACGACCCTCTTTCCACTTGGCCTGCAACACCGCCGCCGCCCCCCCCTTAA------------------------------------------------------------ Bolbitis_repanda_JBLI ATGGGATTCAAG---GGC---GTGAAGTTTGACGAGGCGCCTCCAGAGGACTTCGATCCGGCGGATCCGTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATTGAGCGGGCCAAGATTTTGCGCGAGCGCGTGAGCCAGTGCTATCGCCGCGAGGGCGTCAACCACCTTCAGAACTGCCGTTCAGCGGTGCGCCAGTACTTGGAATCTCTCAAGGGCGTGGGGTGGGGCAACGAGGGCCGCCCCGCCTACGCCAACGACCCTCTCTCCACTTGGCCTGCCA??---------CCGCCCCCTTTCAAAGCTTCCTCTTAA--------------------------------------------- Botrypus_virginianus_BEGM ATGGTATTCAAA---GGTGAAGTCAAGTTTGATGAGACTCCCCCAGATGATTTTGACCCCGAGAACCCCTACAACGACCCCGTCGCGTTTTTCGAACAGCGAGAATATGTCGTCCGAGAGAAGCTCGTGGCCATCGAGACTGCCAAGATTCTCAGGGAAAGGGTGAGACAATGCTACTGGCTGGAGGGAGTGAATCACCATGAAAAGTGCAGGAAGGTGGTGCGGCAGTATCTGGATGCGATCAAGGGAGAGTGGGATGGGGCAAGGAATCGCGCCCCAAATTTGCGA---------------------------------------------CCGAGGTATCCAGATCCGAATAATTACAGTTTACACCCTCTCTTGGCTAGTTTCCTATACTCG Crepidomanes_venosum -------------------------------------------------------ATCCAGAGAATCCCTACAAGGATCCGGTCGCATACTTGGAGATGCGCGAACATTTGGTTCGGGAAAGGTGGATTGCCGTCGAGAAATCCAAAATACTCCGTGAGCGTGTACAGAAGTGCTACCGTCGGGAGGGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cryptomeria_japonica_DSXO ATGGTTTTCAAG---GGCGAAGTTGAATTTGACGAAGGCCCACCTGACAATTTCGATCCAAAAAATCCATACGCAGATCCAGTGGCATTTTTTGAGTACAGAGAATACCTCGTGCGTGAGAAATGGATAGGCATTGAGACAGCCAAGATTCTGAGGGATAAAGTGAGATGGTGTTACAGGAAGGAAGGCGTCAATCATCTCCAGAATTGCAGAGAGATTGTTCGTCAATATCTCGAGTCCACCAAGGGCATCGGCTGGGGGAAAGACGCTCGCCCTCCTTATGCCCAC---------------------------------------------GGCACCGATACTGCTAAACCCTGA--------------------------------------- Culcita_macrocarpa_PNZO ATGGGGTTCAAG---GGC---GTGAAGTTCGACGAGGCGCCGCCAGACGATTTCGATCCGGCGGATCCGTACAAGGACCCGGTGGCGTTCCTGGAGATGCGGGAGCACTTGGTGCGGGAGAAGTGGGTGGCTATCGAGCGCGCCAAGATCCTACGGGAGCGCGTCCAGCAGTGCTACCGCCGGGAGGGTGTGAACCACCTTCAGAACTGCCGCACCACCGTCCGCCAGTATCTGGAATCCCTCAAGGGCGTCGGTTGGGGCAAGGAGGGCCGCCCCTCCTACGCCCACGATCCCAAATCCACCTGGCCCGCTACGCCGCCTCCGCCGCTGCCCTAAGTAAGGGCATATTAA--------------------------------------------- Cystopteris_fragilis_LHLE ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGACGACTTCGACCCGGCGGATCCATACAAGGACCCGGTGGCGTTCCTGGAGATGCGGGAGCACGTAGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGTGAGGGCGTCAACCACCTTCAGAACTGCCGCACAGCAGTGCACCAGTACTTGGAATCCCTCAAGGGCGTGGGGTGGGGCAAGGAGG-------------------------------------------------------------------------------------------------------------------------------- Cystopteris_protrusa_YOWV ATGGGATTCAAG---GGC---GTGAAATTTGACGAAGCGCCGCCTGACGACTTCGACCCGGCGGATCCATACAAGGACCCGGTGGCGTTCCTGGAGATGCGGGAGCACGTAGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGCCGCTCAGCAGTGCACCAGTACTTGGAATCCCTCAAGGGCGTGGGGTGGGGCAAGGAGG-------------------------------------------------------------------------------------------------------------------------------- Cystopteris_reevesiana_RICC ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGACGACTTCGACCCGGCGGATCCATACAAGGACCCGGTGGCGTTCCTGGAGATGCGGGAGCACGTAGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGCCGCACAGCAGTGCACCAGTACTTGGAATCCCTCAAGGGCGTGGGGTGGGGCAAGGAGG-------------------------------------------------------------------------------------------------------------------------------- Cystopteris_sp_XXHP ATGGGATTCAAG---GGC---GTGAAATTTGACGAAGCGCCGCCTGACGACTTCGACCCGGCGGATCCATACAAGGACCCGGTGGCGTTCCTGGAGATGCGGGAGCACGTAGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGCCGCTCAGCAGTGCACCAGTACTTGGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------- Cystopteris_utahensis_HNDZ ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGACGACTTCGATCCGGCGGATCCATACAAGGACCCGGTGGCGTTCCTGGAGATGCGGGAGCACGTAGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGCCGCTCAGCAGTGCGCCAGTACTTGGAATCCCTCAAGGGCGTGGGGTGGGGCAAGGAGGGCCGCCCCTCCTATGCCCACGACCCTCTTTCCACTTGGCCTGCAACACCGCCTCCGCCCCCCCCTTTCAAAGCTTCCTCTTAA--------------------------------------------- Davallia_fejeensis_OQWW ------TTCAAA---GGC---GTGAAGTTCGACGAGGCTCCGCCTGAGGACTTCGACCCGGCGGATCCGTACAAAGACCCGGTGGCGTTTCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCGTCGAGCGCGCCAAGATCTTGCGCGAGCGTGTGCGGCAGTGCTACCGGCGCGAGGGCGTCAACCACTTGCAGAACTGCCGCGTAGCAGTGCGTCAGTACTTGGAATCCCTCAAAGGCGTGGGGTGGGGCAAGGACACCCGCCCCGCCTATGCTCAAGACCCCAATTCCACTTGGCCTGCAACGCCGCCCCCTCCGCCCCCCTCTTGA--------------------------------------------------------- Dennstaedtia_davallioides_MTGC ATGGGATTCAAG---GGC---GTAAAGTTCGACGAAGCGCCGCCCGACGACTTCGATCCAGCGGATCCCTACAAGGACCCGGTAGCGTTCCTGGAGATGCGAGAGTACGTAGTGCGCGAGAAGTGGGTTGCTATCGAGCGCGCCAAGATCTTGCGTGAGCGTGTACGCCAATGCTACCGCCGCGAGGGCGTCAATCACCTCCAGAACTGCCGCTCCACAGTTCGCCAGTACATGGACTCCCTCAAAGGTGTGGGCTGGGGCAAGGAGGGCCGCCCCTCCTATGCCCACGACCCTCAATCC------------------------------------------------------------------------------------------------ Deparia_lobatocrenata_FCHS ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCACCTGACGACTTCGATCCGGCGGATCCTTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGTCGCTCAGCAGTGCGCCAGTACTTGGAATCCCTCAAGGGCGTCGGGTGGGGCAAGGAGGGCCGCCCCTCCTATGCCCACGACCCTCTTT-------------------------------------------------------------------------------------------------- Didymochlaena_truncatula_RFRB ATGGGATTCAAG---GGT---GTGAAATTTGACGAGGCGCCGCCCGACGACTTCGATCCGGCAGATCCATACAAGGACCCGGTGGCGTTCTTGGAAATGCGAGAGCATGTGGTGCGCGAGAAGTGGGTGGGCATCGAGCGCGCCAAGATCTTGCGCGAGCGCGTCCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAATTGCCGCTCAGCAGTGCGCCAGTACCTGGAATCCCTCAAGGGCGTGGGGTGGGGC--------------------------------------------------------------------------------------------------------------------------------------- Diplazium_wichurae_UFJN ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGAAGACTTCGATCCGGCGGATCCTTACAAGGACCCAGTGGCGTTCCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGAGAGCGTGTGCGGCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGTCGCTCGGCAGTACGCCAGTACTTGGAATCTCTCAAGGGCGTGGGGTGGGGCAAGGAGG-------------------------------------------------------------------------------------------------------------------------------- Dipteris_conjugata_MEKP ATGGTTTTCAAG---GGC---GTGAAGTTCGATGAGACTCCTCCCGATGATTTCGATCCGGCTCAGCCCTACAAGGACCCCGTCGCCTTTCTGGAGATGCGCGAGTACTTGGCTCGGGAAAAATGGGTTGCCATCGAGAAGTCCAAAATCCTCCGTGAACGAGTGCAGAAATGCTACCGACTGGAGGGCGTTAATCACCTCCAAAACTGCCGGAAGGTCGTCCGCCTGTACCTCGCCTCTCTTAAAGACGTTGGATGGGGCAAGGATGTCCGTCCTGAATACGCAAAC---------------------------------------------AATGTTTCTCCGTGA------------------------------------------------ Encephalartos_barteri_GNQG ATGGTTTTCAAG---GGCGAAGTTGAATTTGATGAAGGCCCCCCTGATGATTTTGATCCCAAAAATCCATATGCAGATCCAGTGGCAATGCTGGAGCAGCGGGAATATCTTGTACGAGAGAAATGGATTCAGATAGAGACTGCTAAAATTCTGAAGGAGAAGGTGAAGTGGTGTTACCGGAGAGAAGGCGTTAACCATCTTCAGAAATGCAGAGCTATTGTTCGACAGTACCTTGATTCTACCAGGGGAATTGGGTGGGGCAAGGATACTCGACACCATTTATTTCAA---------------------------------------------GGTGGCCCGACTAAATCTGTTGAATTTTCCCATAACTGA------------------------ Equisetum_diffusum_CAPN ATGGTGTTCAAG---GGGGAGGTGAAGTTCGACGATGCACCGCCGGAGGATTTCGACCCGAGCGACCCTTACAAGGACCCCGTGGCCTTCCTCGAGATGAGGGAGTACATAACCAGGGAGAAGCTCATAGGCGTGGAGCGCGCCAAGATCCTCCGCGAGCGTGCGCGCCGCTGCTATCGCCGTGAGGGCGTAAACCACTACCAGAACTGCCGCCAAATCGTGCGTCAATACCTTGATTCCATCAAAAACGTCGGATGGGGCAACGAATATCGCCCTGACTATCCACTC---------------------------------------------AG------------------------------------------------------------- Equisetum_hyemale_JVSZ ATGGTGTTCAAG---GGGGAGGTGAAGTTCGACGATGCACCGCCGGAGGATTTCGACCCCAGCGACCCTTACAAGGATCCCGTGGCCTTTCTCGAGATGAGGGAATACATAACCAGGGAGAAGCTCATAGGGGTGGAGCGCGCTAAGATCCTGCGCGAGCGCGCGCGCCGTTGCTATCGCCGCGAGGGTGTAAATCACTACCAGAACTGCCGCGAAATCGTGCGCCAATACCTTGAATCCATAAAAAATGTAGGATGGGGCAATGAATATCGCCCTTACTA------------------------------------------------------------------------------------------------------------------- Gaga_arizonica_DCDT ATGGGATTCAAG---GGC---GTGAAGTTCGACGAGGCGCCGCCAGAGGACTTCGATCCGGCGGACCCCTACAAGGACCCGGTGGCGTTCCTGGAAATGCGAGAGCACATTGTGCGCGAGAAGTGGGTGGCCATTGAGCGTGCCAAGATCTTGCGCGAGCGTGTGCGCCAATGCTACCGTCGTGAGGGCGTTAACCACCTCCAGAACTGCCGTACCGCTGTTCGTCAGTACCTGGAATCTCTCAAGGGCATTGGCTGGGGCAAGGATGGCCGCCCTGCGTATGCCCACGATCCTCAATCCACCTGGCCTGCTACCCCACCTCCACCTCCGCCCTTCAAGTAG------------------------------------------------------ Gymnocarpium_dryopteris_HEGQ ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGACGACTTCGATCCGGCGGATCCGTACAAGGACCCGGTGGCGTTTCTGGAGATGCGGGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGTTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGCCGCTCAGCAGTGCGCCAGTACTTGGAATCCCTCAAGGGCGTGGGG--------------------------------------------------------------------------------------------------------------------------------------------- Homalosorus_pycnocarpos_OCZL -------------------------AATTTGACGAGGCGCCGCCTGACGACTTCGATCCGGCGGATCCTTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCGCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGTCGCTCAGCAGTGCGGCAGTACTTGGAATCCCTCAAGGGCGTGGGGTGGGGCAAGGAGGGCCGCCCCGCCTATGCCCACGACCCTCTTTCCACTTGGCCTGCAACACCGCCCCCACCCCCTCCTTCTTAA--------------------------------------------------------- Hymenophyllum_bivalve_QIAD ATGGGATTCAAG---GGC---GTCAAGTTCGATGAGACACCTCCGGATGATTTCGATCCAGAGAATCCCTACAAGGATCCGGTAGCGTTCTTGGAGATGCGCGAGCATTTGGTTAGGGAAAAATGGATTGCTATCGAGAAATCCAAAATCCTCCGTGAGCGTGTACAGAAGTGCTACCGACGCGAGGGCGTGAACCACCTCCAGAACTGCCGGAAGATCGTGCGCCAGTATCTCGGTTCTTTGAAAGATGCTGGTTGGGGCAAAGAGTCCCGCCCTGCCTACACAAAT---------------------------------------------TTCTGA--------------------------------------------------------- Hymenophyllum_cupressiforme_TRPJ ATGGGATTCAAG---GGC---GTCAAGTTCGATGAGACACCTCCGGATGATTTCGATCCAGAGAATCCCCACAAGGATCCGGTAGCGTTCTTGGAGATGCGCGAGCATTTGGTTCGGGAAAAATGGATTGCTATCGAGAAATCCAAAATCCTCCGTGAGCGTGTACAGAAGTGCTACCGTCGCGAGGGCGTGAACCACCTCCAGAACTGCCGGAAGATCGTGCGCCAGTATCTCGGTTCTTTGAAAGATGCTGGCTGGGGCAAAGAGTCCCGCCCTGCCTACACAAAT---------------------------------------------TTCTGA--------------------------------------------------------- Leucostegia_immersa_WGTU ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGACGACTTCGATCCAGCGGATCCTTACAAAGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACGTAGTGCGGGAGAAGTGGGTGGCGATCGAGCGCGCCAAGATCTTGCGCGAGCGTGTGCGCCAGTGCTACCGCCGGGAGGGGGTCAACCACCTTCAGAACTGCCGCTTAGCAGTGCGCCAGTACCTGGAGTCCCTCAAGGGCGTGGGGTGGGGAAAGGAGGGCCGACCCTCCTACGCCCACGACCCTCTTTCCACTTGGCCTGCAACTCCGCCCCCGCCCCCCCCTTTCAAAGCTTCCTCCTAA--------------------------------------------- Lindsaea_linearis_NOKI ATGGGGTTCAAA---GGC---GTGAAGTTCGACGAGACGCCACCGGACGATTTCGATCCTGCGGATCCTTACAAGGATCCCGTGGCCTTCTTGGAGATGCGAGAGCACATTGTGCGCGAGAAGTGGGTCGACATCGAGCGCGCCAAGATTCTGCGTGAGCGCGTCCGACAGTGCTACAAACGTGAGGGCGTCAATCACCTCCAGAACTGCCGCATTGCAGTGAGGAAGTATCTCGAATCCCTCAAAGGCGTCGGGTGGGGCAAAGACGGCCGCCCTGCATACGCTCATGATCCCGAGTCCACTTGGCCTGCCACACCGCCTGCACCGCCGGCATTCAAGCGTTAG--------------------------------------------------- Lindsaea_microphylla_YIXP ATGGGGTTCAAA---GGC---GTGAAGTTCGACGAGACGCCACCGGACGACTTCGATCCTGCGGATCCCTACAAGGATCCCGTGGCCTTCTTGGAGATGCGAGAGCACATTGTGCGCGAGAAGTGGGTCGACATCGAGCGCGCCAAGATCCTGCGTGAGCGCGTCCGACAGTGCTACAAACGTGAGGGCGTCAATCACCTCCAGAACTGCCGCATTGCAGTGAGGAAGTATCTCGAATCCCTCAAAGGCGTCGGGTGGGGCAAAGACGGCCGCCCTGCATACGCTCATGATCCCGAGTCCACTTGGCCTGCCACACCGCCTGCACCACCGGCATTCAAGCGTTAG--------------------------------------------------- Lygodium_japonicum_PBUU ATGGGATTCAAG---GGC---GTGAAGTTTGACGAGGGCCCTCCAGAGGATTTCGACCCGCAGGATCCCCACAAGGACCCCGTGGCCTACCTGGAGATGCGCGAGTATGTGGTCCGCGAGAAGTGGGTCGCCATCGAGAAGGCCAAGATCCTGCGCGAGCGCGTCCGGCAGTGCTACCGCCGCGAGGGCGTGAACCACCTCCAGAACTGCCGCAAGCAGGTGCGCCAGTACCTCGCCTCCCTCAACAATGTTGGCTGGGGCAAGGACGTGCGCCCCGCGTACGCCAAC---------------------------------------------AACTTCAAGGAATGA------------------------------------------------ Myriopteris_rufa_GSXD ATGGTATTCAAG---GGC---GTGAAGTTCGACGAGGCGCCGCCAGAGGACTTCGATCCGGCGGACCCCTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACATTGTGCGCGAGAAGTGGGTGGCCATCGAGCGTGCCAAGATCTTTCGCGAGCGTGTGCGCCAATGCTACCGCCGCGAGGGCGTTAACCACCTTCAGAACTGCCGTACAGTTGTTCGCCAGTATCTGGAATCTCTTAAGGGCGTTGGCTGGGGCAAGGATGGCCGCCCTGCCTATGCCCACGACCCTCAATCCACCTGGCCTGCTACCCCACCTCCACCTCCTCCCTTCAAGTGA------------------------------------------------------ Nephrolepis_exaltata_NWWI -------------------------------------------------------------------CGTACAAGGATCCGGTGGCGTTCCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCGCCAAGATCTTGCGGGAGCGCGTGCGCCAGTGCTACCGTCGTGAGGGCGTCAACCATCTTCAGAACTGCCGCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Notholaena_montieliae_YCKE ATGGGATTCAAG---GGC---GTGAAGTTCGACGAGGCGCCGCCTGAGGACTTTGATCCGGCGGACCCCTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACATTGTGCGAGAGAAGTGGGTGGCCATTGAGCGTGCCAAGATCTTGCGAGAGCGTGTGCGCCAATGCTACCGCCGTGAGGGTGTTAATCACCTTCAGAACTGCCGTACCGCTGTTCGCCAGTACCTGGAATCTCTCAAGGGAATTGGCTGGGGCAAGGATGGTCGCCCTGCCTATGCACACG----------------------------------------------------------------------------------------------------------- Onoclea_sensibilis_HTFH ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGACGACTTCGATCCGGCGGATCCTTACAAGGACCCGGTGGCGTTCCTGGAGATGAGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGCGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGCCGCTCAGCCGTGCGCCAGTACTTGGAATCCCTCAAGGGTGTCGGGTGGGGCAAGGAGGGCCGCCCCTCCTATGCCCACGACCCTCTTTCCACTTGGCCTGCAACACCGCCCCCGCCCCCCCCTTAA------------------------------------------------------------ Ophioglossum_sp_QHVS ATGGTGTTCAAA---GGTGAGGTGAAGTTCGATGATAGCCCACCAGAAGATTTCGATCCTGAGAACCCATATAAAGACCCCGTCGCCTTCTTGGAGCAGAGGGAGTATGTGACCAGAGAGAAGCTGATTGCCATCGAGACTTCCAAGATTCTGAAGGAAAGGGTTCGTCAGTGCTACTGGCTGGAGGGTGTCAACCACCTAGAGAAGTGCAGAAAAGTCGTTCGTCAGTATCTGGACTCACTTAAGGATGTAGGATGGGGCAAAGAATCACGACCTAAATTTACAACC---------------------------------------------CAGGTTTCTGGATCTGAATAA------------------------------------------ Osmunda_sp_UOMY ATGGTGTTCAAG---GGCGAGGTGAAGTTCGATGAGACTCCGCCTGATGATTTCGATCCGGAGCACCCCTACAAGGACCCCGTCGCCTTCCTGGAGATGCGGGAACACATTGCTCGTGAAAAGTGGGTTGCCGTGGAGAAATCTAAAATCCTCCGGGAAAGAGTCCAGCAATGTTACCGACGGGAGGGCGTGAATCACCACCAGAACTGTAGGAAGATCGTGCGCCTGTACCTTGATTCGATCAAAAATGTTGGATGGGGCAAGGAAGCTCGTCCGGCCTACACAAAT---------------------------------------------CTCTAG--------------------------------------------------------- Parahemionitis_cordata_ZXJO ATGGGATTCAAG---GGC---GTGAAGTTCGACGAGGCGCCGCCAGAGGACTTCGATCCGGAGGACCCCTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACATTGTGCGCGAGAAGTGGGTGGCCATTGAGCGTGCTAAGATCTTGCGCGAGCGTGTGCGCCAATGTTACCGTCGTGAGGGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Peperomia_fraseri_XSZI ATGGTGAGGAAGGCGAAG---GTGGAGTTCGACGAGGGCCCGCCGGACAACTTCGATCCGGCGAACCCGTACGCCGACCCGGTGGCGATGCTGGAGATGCGGGAGTACCTTGTGAGGGAGAAGTGGATCCAGATCGAGACGGCCAAGATTTTGCGTGAAAGGGTACAGCGGTGCTACCGCGTCGAAGGGGTCAACCACCGGCAGAAATGCCGCGAGATCGTCCAGCAGTACCTCGACGCCACCCGCGGCGTCGGCTGGGGCAAGGACAACCGTCCCCACGTGCTCCACGGTCCGAAG------------------------------------GTTGAAGCGGCTGAGTAGAGCGGTCAATTGA-------------------------------- Phlebodium_pseudoaureum_ZQYU ATGGGATTCAAA---GGC---GTGAAGTTCGACGAAGCCCCGCCTGACGACTTCGACCCGGCGGATCCGTACAAGGACCCGGTGGCGTTTCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATTGAGCGCGCCAAGATCTTGCGCGAGCGTGTGCGGCAGTGCTACCGGCGCGAGGGCGTTAACCACCTCCAGAACTGCCGGGTGGCAGTGCGTCAGTACTTGGAGTCCATCAAAGGCGTGGGGTGGGGCAAGGACAGCCGCCCCGCCTATGCTCATGACCCCAATTCTACTTGGCCTGCAACACCGCCCCCTCCGCCCCCCTCTTAA--------------------------------------------------------- Phymatosorus_grossus_ORJE ATGGGATTCAAA---GGC---GTGAAGTTCGACGAATCTCCGCCTGAAGACTTCGACCCGGCGGATCCATACAAGGACCCGGTGGCGTTCTTGGAGATGCGAGAGCACGTGGTTCGCGAGAAGTGGGTGGCCATCGAGCGTGCCAAGATCTTGCGCGAGCGTGTGCGGCAGTGCTACCGGCGCGAGGGCGTCAACCATCTCCAGAATTGCCGGGTGGCAGTACGACAGTACCTGGAATCCATCAAAGGCGTGG??---------------------------------?ACCCCAATTCCACTTGGCCCGCAACACCGCCCCCTCCGCCTCCATCTTAA--------------------------------------------------------- Pilularia_globulifera_KIIX ATGGGTTTCAAG---GGC---GTGAAGTTCGACGAATCGCCGCCGGACGATTTCGACCCGGCGGATCCGTACAAGGATCCGGTGGCGTTCCTGGAGATGCGGGAGCACGTCGTACGGGAGAAATGGGTGGCCATCGAGCGATCTAAGATCCTGCGGGAGCGCGTTCGCCAGTGCTACCACCGCGAGGGAGTGAACCACCTCCAGAATTGCCGTACTGCGGTCCGCCAATACCTGGAATCCCTCAAAGGCGTTGGCTGGGGCAAAGAGGGCCGCCCTGCCTACGCCCATGACCCTCAGTCCACGTGGCCTGCCACACCGCCACCGCCTCCGCCTTCCGCTCGCTCTTCGTAG--------------------------------------------- Pityrogramma_trifoliata_UJTT ATGGTGTTCAAG---GGC---GTGAAGTTCGACGAGGCGCCGCCGGAGGATTTTGATCCGGCGGATCCATACAAGGACCCGGTGGCGTTTCTGGAGATGCGAGAGCATATCGTGCGCGAGAAGTGGGTCTCCATTGAGAGAGCCAAGATCATGCGGGAGCGTGTGCGTCAGTG?---------GAAGGCGTTAATCACCTCCAGAATTGCCGCATTGCTGTTCGCCGCTACCTTGAATCCCTGAAAGGCGTTGGCTGGGGCAAGGATGGCCGCCCTTCGTACGCCCATGACCCCAGTTCCACCTGGCCTGCCACCCCACCCCCTCCACCTCCCTTCAAGTAA------------------------------------------------------ Plagiogyria_japonica_UWOD ATGGGTTTCAAG---GGA---GTGAAGTTCGACGAGGCGCCGCCGGACGATTTCGATCCGGCGGATCCGTACAAGGACCCGGTGGCGTTCCTGGAGATGCGGGAGCACTTGGTGCGAGAGAAGTGGGTGGCCATCGAGCGGGCCAAGATCTTGCGGGAGCGAGTCCAGCAGTGCTACCGCCGGGAGGGTGTGAACCACCTTCAGAACTGCCGCACCACCGTCCGCCAGTATCTGGAATCCCTCAAGGGCGTCGGCTGGGGCAAGGAGGGCCGCCCCTCCTACGCCCACGATCCCAAATCCACCTGGCCCGCTACGCCGCCTCCGCCACTGCCATCTTAA--------------------------------------------------------- Pleopeltis_polypodioides_UJWU ATGGGATTCAAA---GGC---GTGAAGTTCGACGAAGCCCCGCCTGAGGACTTCGACCCGGCGGATCCGTACAAGGACCCGGTGGCGTTTCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCGCCAAGATCTTGCGCGAGCGTGTGCGGCAGTGCTACCGGCGCGAGGGCGTCAACCACCTCCAGAACTGCCGCGTGGCGGTGCGTCAGTACTTGGAATCCATCAAAGGCGTGGGGTGGGGCAAGGACAGCCGCCCCGCCTACGCTCATGACCCCAATTCCACTTGGCCTGCAACACCGCCCCCTCCGCCCCGCTTCTAA--------------------------------------------------------- Polypodium_amorphum_YLJA ATGGGATTCAAA---GGC---GTGAAGTTCGACGAAGCCCCGCCTGACGACTTCGACCCGGCGGATCCGTACAAGGACCCGGTGGCGTTTCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATTGAGCGCGCCAAGATTTTGCGCGAGCGTGTGCGGCAGTGCTACAGGCGCGAGGGCGTCAACCACCTCCAGAACTGCCGGGTGGCAGTGCGTCAGTACTTGGAATCCATCAAAGGCGTGGGGTGGGGCAAGG----------------------------------------------------------------------------------------------------------------------------------- Polypodium_glycyrrhiza_CJNT -------------------------AGTTCGACGAAGCCCCGCCTGACGACTTCGACCCGGCGGATCCGTACAAGGACCCGGTGGCGTTTCTGGAGATGCGAGAGCATGTGGTGCGCGAGAAGTGGGTGGCCATTGAGCGCGCCAAGATTTTGCGGGAGCGTGTGCGGCAGTGCTACCGGCGCGAGGGCGTCAACCACCTCCAGAACTGCCGGGTGGCAGTGCGTCAGTACTTGGAATCCATCAAAGGCGTGGGGTGGGGCAAGGACACCCGCCCCGCCTATGCTCATGACCCCAATTCCACTTGGCCTGCAACACCGCCCCCTCCGCCCCCCTCTTAA--------------------------------------------------------- Polypodium_hesperium_B_IXLH ATGGGATTCAAA---GGC---GTGAAGTTCGACGAAGCCCCGCCTGACGACTTCGACCCGGCGGATCCGTACAAGGACCCAGTGGCGTTTCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATTGAGCGCGCCAAGATTTTGCGGGAGCGTGTGCGGCAGTGCTACCGGCGCGAGGGCGTCAACCACCTCCAGAACTGCCGGGTGGCAGTGCGTCAGTACTTGGAATCCATCAAAGGCGTGGGGTGGGGCAAGGACCCCCGCCCCGCCTATGCTCATGACCC------------------------------------------------------------------------------------------------------- Polypodium_hesperium_GYFU ATGGGATTCAAA---GGC---GTGAAGTTCGACGAAGCCCCGCCTGACGACTTCGACCCGGCGGATCCGTACAAGGACCCAGTGGCGTTTCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATTGAGCGCGCCAAGATTTTGCGGGAGCGTGTGCGGCAGTGCTACCGGCGCGAGGGCGTCAACCACCTCCAGAACTGCCGGGTGGCAGTGCGTCAGTACTTGGAATCCATCAAAGGCGTGGGGTGGGGCAAGGAC--------------------------------------------------------------------------------------------------------------------------------- Polystichum_acrostichoides_FQGQ ATGGGTTTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGACGACTTCGATCCGGCGGATCCTTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCGCCAAGATCTTGCGCGAGCGCGTGAACCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGCCGCTCAGCAGTGCGCCAGTACTTGGAATCCCTCAAAGGCGTGGGGTGGGGCAAGGAGGGCCGCCCCTCCTATGCCCACGACCCTCTTTCCACTTGGCCTGCAACACCGCCCCCGCCCCCCCCTTTCAAAGCTTCCTCTTAA--------------------------------------------- Psilotum_nudum_QVMR ATGGTGTTCAAA---GGAGAAGTGAAGTTCGATGATGCTCCCCCTGAGGATTTTGATCCCCAAGATCCTCACAAGGATCCCATTGCATTCTTGGAGCAGCGAGAATACATCGTGCGACAGAAGCTTGTGGCCATCGAGACTGCTAAGATTCTCAGGGAGCGTGTGGCGCACTGCTATTTTCTGGAGGGAGTGAACCATTACCAGAACTGCAAGAAGGTGGTGCGTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pteridium_aquilinum_Pt_Contig4243 ATGGGATTCAAG---GGC---GTGAAGTTCGACGAGTCGCCGCCGGACGACTTCGATCCAGCGGATCCCTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACGTAGTGCGCGAGAAGTGGGTGGCTATCGAGCGCTCCAAGATCCTGCGTGAGCGTGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTCCAGAACTGCCGCTCCGCCGTTCGCCAGTACCTGGAATCCCTCAAAGGCGTGGGCTGGGGCAAGGATGGCCGCCCTTCATACGCCCACGACCCTCAATCCACTTGGCCTGCAACACCGCCCCCTCCCCCCCCTTTCAAAGCTTCCTAA------------------------------------------------ Pteris_ensiformis_FLTD ATGGTATTCAAG---GGC---GTGAAATTCGACGAGGCGCCGCCGGAAGACTTTGATCCGGCGGATCCGTACAAGGATCCGGTGGCGTTCCTGGAGATGCGAGAGCATATAGTGCGCGAGAAGTGGGTGGCCATCGAGCGAGCCAAGATCTTCCGGGAGCGTGTGCGACAATGCTACCGTCGGGAAAGCGTAAACCACCTCCAAAATTGCCGTCCTGCTGTTCGGAAGTACCTAGAATCTCTCAAAGGCGTTGGCTGGGGCAAGGAGGGCCGCCCTGCTTATGCCCACGACCCTCAATCCACGTGGCCTGCTACCCCACCCCCGCCTCCTCCCTTCAAGTAGGT---------------------------------------------------- Pteris_vittata_POPJ ATGGTATTCAAG---GGC---GTCAAGTTCGACGAGGCGCCGCCAGAAGACTTTGATCCGGCGGATCCGTACAAGGACCCAGTGGCGTTCCTGGAGATGCGGGAACACATAGTGCGCGAGAAGTGGGTGCAAATCGAGCGAGCCAAGATTAAACGGGAGCGTGTGCGACAATGCTACCGCCGGGAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Sceptridium_dissectum_EEAQ ATGGTGTTCAAA---GGTGATGTCAAGTTTGATGAGACTCCCCCAGATGATTTTGACCCGGAGAACCCCTACAACGACCCCGTCGCATTTTTGGAACAGCGAGAATATGTCGTCCGAGAGAAGCTTGTGGCCATTGAGACTGCCAAGATTCTTAGGGAAAGGGTGAGGCAATGCTACTGGCTGGAGGGAGTGAATCACCATGAAAAGTGCAGGAAGGTGGTGCGCCAGTATTTGGATGCGATAAAGGGAGTGGGATGGGGCAAGGAATCACGCCCCAAATTTGCAACC---------------------------------------------GAGGTATCTAGATCTGAATAA------------------------------------------ Sticherus_lobatus_XDVM ATGGGTTTCAAG---GGC---GTGAAGTTTGATGAGACCCCTCCTGATGATTTCGATCCAGAGCACCCTTACAAGGACCCTGTCGCATTTCTGGAGATGCGCGAACACATCGTCCGCGAAAAGTGGATCGCCATCGAGACCTCTAAAATCCTCCGTGAGCGCGTCCAGAAGTGCTACCGCGAGGAGGGCGTGAATCACCTCCAGAGCTGCCGGAAGATCGTGCGTCAGTACCTTTCCTCGCTTCGGAACGTTGGATGGGGCAAGGATGCCCGTCCTGCCTACTGTGAC---------------------------------------------ACGCTCTGA------------------------------------------------------ Thelypteris_acuminata_MROH ATGGGATTCAAA---GGC---GTGAAATTTGACGAGGCGCCGCCTGACGACTTCGATCCGGCTGATCCTTACAAGGACCCGGTGGCATTCCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCGCCAAGATCTTGCGTGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAATCACCTTCAGAACTGTCGCTCAGCAGTGCGTCAGTACTTGGAATCCCTG--------------------------------------------------------------------------------------------------------------------------------------------------------- Thyrsopteris_elegans_EWXK ATGGGCTTCAAG---GGC---GTGAAGTTCGACGAAGCGCCGCCAGACGATTTCGATCCGGCGGATCCATACAAGGACCCCGTGGCATTCCTGGAGATGCGGGAGCACGTGGTGCGGGAGAAGTGGGTGGCCATCGAGCGCGCCAAGATCCTGCGGGAGCGCGTCCAGCATTGCTACCGCCGGGAGGGAGTAAACCACCTCCAGAACTGCCGCACCGCCGTCCGCCAGTACCTGGAATCCCTCAAGGGCGTTGGCTGGGGCAAGGAGGGCCGCCCCGCCTATGCCCACGACCCCGAATCAACCTGGCCCGCCACGCCGCCTCCGCCGCGGCCCTCCGCAAGGACATCTTAA--------------------------------------------- Tmesipteris_parva_ALVQ ATGGTGTTCAAA---GGAGAAGTGAAGTTCGATGACGCTCCGCCTGAGGATTTTGATCCTCAAAACCCTCACAAGGATCCGATTGCATACTTGGAGCAGCGAGAATACATCGTGCGACAGAAGCTTGTGGCCATCGAGACAGCCAAGATTCTCAGGGAGCGCGTGGCGCGGTGCTATTTTCTGGAGGGAGTGAACCATTACCAGAATTGTAAGAAGGTGGTGCGTCAGTATCTTGATTCGATCAAGGGGTTGGGATGGGGCGTTGAG------------------------------------------------------------------CGTCCTGATATTTGA------------------------------------------------ Vittaria_appalachiana_NDUV ATGGGATTCAAA---GGC---GTGCACTTCGACGAGAGGCCTCCAGAGGACTTCGATCCTGAAAACCCATACAAGGACCCTGTGGCGTTTCTGGAGATGCGAGAGCACATAGTGCGCGAGAAGTGGGTTTCAATAGAGCGAGCCAAGATCTTGCGCGAGCGTGTGAGCCAATGCTACCGCCGGGAGGGCGTTAATCACCTTCAGAACTGCCGCGTTGCCGTCCGTCAGTACTTGGAATCCCTCAAGGGCCTTGGCTGGGGCAACGATGGGCGCCCTGCCTATGCGCAGGACCCCAATTCTACCTGGCCCGCCACTCCCCCTCCGCCTCCTCCTTTCAAGAAGTAG--------------------------------------------------- Vittaria_lineata_SKYV ---------------??C---GTGCACTTCGACGAGAGGCCTCCAGAGGACTTCGATCCCGAAAACCCATACAAGGACCCTGTGGCGTTTCTGGAGATGCGAGAGCACATAGTGAGGGAGAAGTGGGTTTCAATCGAGCGAGCCAAGATCCTGCGCGAGCGTGTGCGCCAGTGCTACCGCCGAGAGGGCGTGAATCACCTTCAGAACTGTCGTGTTGCTGTCCGCCAGTACTTGGAATCCCTCAAGGGCCTTGGCTGGGGCAACGATGGGCGCCCTGCCTATGCGCAGGACCCCAATTCTACCTGGCCCGCCACTCCCCCTCCTCCTCCTCCTTTCAAGAAGTAG--------------------------------------------------- Woodsia_ilvensis_YQEC ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGACGACTTCGATCCGGCGGATCCGTACAAGGACCCGGTGGCGTTCCTGGAGATGCGGGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGGGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGTCGCTCCGCAGTGCACCAGTACTTGGAATCCCTCAAGGGCATCGGGTGGGGCAAGGAGGGCCGCCCCTCCTACGCCCACGACCCTCTTTCCACTTGGCCTGCAACACCGCCCCCGCCCCCCCCTTTCAAAGCTTCTTCTTGA--------------------------------------------- Woodsia_scopulina_YJJY ATGGGATTCAAG---GGC---GTGAAATTTGACGAGGCGCCGCCTGACGACTTCGATCCGGCGGATCCGTACAAGGACCCGGTGGCGTTCCTGGAGATGCGAGAGCACGTGGTGCGCGAGAAGTGGGTGGCCATCGAGCGCTCCAAGATCTTGCGGGAGCGCGTGCGCCAGTGCTACCGCCGCGAGGGCGTCAACCACCTTCAGAACTGTCGCTCAGCAGTGCGCCAGTACTTGGAATCCCTCAAGGGCGTGGGGTGGGGCAAGGAGGGCCGCCCCTCCTACGCCCACGACCCTCTTTCCACTTGGCCTGCAACACCGCCCCCGCCCCCCCCTTTCAAAGCTTCTTCTTAA--------------------------------------------- Zea_mays_GRMZM2G173277_T02 ATGGTGCGCAAGGCGAAG---GTTGAGTTCGACGAGCAGCCGCCGGATAACTTCGACCCGAAGAACCCGTATGCCGACCCGGTGGCGATGCTCGAGTACCGGGAACACCTGGTGCGAGAGAAGTGGATCCATATCGAGACCGCCAAGATCATCCGGGAGCGCCTCCGCTGGTGCTACCGCATCGAGGGCATCAACCACCACCAGAAGTGCCGCCACCTCGTCGACCAATACCTAGAGGCTACCCGCGGCGTGGGTTGGGGCAAGGATGCCCGCCCGCCTGAACTCCACGAGCCCAAG------------------------------------AAGACCGTCAAGGCGGAGTAG------------------------------------------ ; END; BEGIN SETS; CHARSET codonPos3 (CHARACTERS = Ferns_NDUFS6) = 3 6 9 12 15 18 21 24 27 30 33 36 39 42 45 48 51 54 57 60 63 66 69 72 75 78 81 84 87 90 93 96 99 102 105 108 111 114 117 120 123 126 129 132 135 138 141 144 147 150 153 156 159 162 165 168 171 174 177 180 183 186 189 192 195 198 201 204 207 210 213 216 219 222 225 228 231 234 237 240 243 246 249 252 255 258 261 264 267 270 273 276 279 282 285 288 291 294 297 300 303 306 309 312 315 318 321 324 327 330 333 336 339 342 345 348 351 354 357 360 363 366 369 372 375 378 381 384 387 390 393 396; CHARSET codonPos2 (CHARACTERS = Ferns_NDUFS6) = 2 5 8 11 14 17 20 23 26 29 32 35 38 41 44 47 50 53 56 59 62 65 68 71 74 77 80 83 86 89 92 95 98 101 104 107 110 113 116 119 122 125 128 131 134 137 140 143 146 149 152 155 158 161 164 167 170 173 176 179 182 185 188 191 194 197 200 203 206 209 212 215 218 221 224 227 230 233 236 239 242 245 248 251 254 257 260 263 266 269 272 275 278 281 284 287 290 293 296 299 302 305 308 311 314 317 320 323 326 329 332 335 338 341 344 347 350 353 356 359 362 365 368 371 374 377 380 383 386 389 392 395; CHARSET exclude (CHARACTERS = Ferns_NDUFS6) = 334-396; CHARSET codonPos1 (CHARACTERS = Ferns_NDUFS6) = 1 4 7 10 13 16 19 22 25 28 31 34 37 40 43 46 49 52 55 58 61 64 67 70 73 76 79 82 85 88 91 94 97 100 103 106 109 112 115 118 121 124 127 130 133 136 139 142 145 148 151 154 157 160 163 166 169 172 175 178 181 184 187 190 193 196 199 202 205 208 211 214 217 220 223 226 229 232 235 238 241 244 247 250 253 256 259 262 265 268 271 274 277 280 283 286 289 292 295 298 301 304 307 310 313 316 319 322 325 328 331 334 337 340 343 346 349 352 355 358 361 364 367 370 373 376 379 382 385 388 391 394; END; [ The following blocks are output data for analysis step 16117 ] BEGIN TREES; TITLE Ferns_NDUFS6; LINK TAXA = TaxaForAnalysisStep16117; TREE NDUFS6_bestREP2 = [&R] (Anemia_tomentosa_CQPW:0.18379484,(((Lindsaea_linearis_NOKI:0.00759715,Lindsaea_microphylla_YIXP:0.00471458):0.20427501,((((Dennstaedtia_davallioides_MTGC:0.0573605,(((Didymochlaena_truncatula_RFRB:0.05195428,(((((((Gymnocarpium_dryopteris_HEGQ:0.01035353,(Cystopteris_utahensis_HNDZ:1.0E-8,((Cystopteris_sp_XXHP:1.0E-8,Cystopteris_protrusa_YOWV:1.0E-8):0.00431733,(Cystopteris_reevesiana_RICC:1.0E-8,Cystopteris_fragilis_LHLE:0.00439289):0.00453946):0.00897759):0.00782359):0.00897954,(Woodsia_scopulina_YJJY:1.0E-8,Woodsia_ilvensis_YQEC:0.01755727):0.00716851):0.00327618,(Deparia_lobatocrenata_FCHS:0.0036131,Onoclea_sensibilis_HTFH:0.01355484):0.00343652):1.0E-8,(Diplazium_wichurae_UFJN:0.02843345,(Athyrium_sp_AFPO:0.0042745,'Athyrium filix-femina URCP':0.00945442):0.00417638):0.00851347):0.00328644,(Homalosorus_pycnocarpos_OCZL:0.01405871,(Thelypteris_acuminata_MROH:0.03564693,Blechnum_spicant_VITX:0.02068875):1.0E-8):1.0E-8):0.00335622,Polystichum_acrostichoides_FQGQ:0.01343541):1.0E-8,((Nephrolepis_exaltata_NWWI:0.04758002,(Davallia_fejeensis_OQWW:0.03036711,((Phymatosorus_grossus_ORJE:0.06921182,((((Polypodium_hesperium_B_IXLH:1.0E-8,Polypodium_hesperium_GYFU:1.0E-8):0.00794862,Polypodium_glycyrrhiza_CJNT:0.00340812):0.00518176,Polypodium_amorphum_YLJA:0.00459213):0.00496482,Phlebodium_pseudoaureum_ZQYU:0.00996423):0.00602565):0.00489365,Pleopeltis_polypodioides_UJWU:0.01017357):0.01046747):0.07437495):0.02672077,Bolbitis_repanda_JBLI:0.06650714):0.01926076):0.00434004):0.00720879,Leucostegia_immersa_WGTU:0.04480263):1.0E-8,(Asplenium_nidus_PSKY:0.04985621,Asplenium_platyneuron_KJZG:0.01301967):0.13078512):0.05318779):0.01113224,Pteridium_aquilinum_Pt_Contig4243:0.02766497):0.03976519,(((Azolla_caroliniana_cf_CVEG:0.3494952,Pityrogramma_trifoliata_UJTT:0.04286984):0.10660019,(Pteris_ensiformis_FLTD:0.04449045,Pteris_vittata_POPJ:0.10370997):0.02200823):0.04964666,(((Adiantum_raddianum_BMJR:0.06263977,Argyrochosma_nivea_XDDT:0.01978062):0.0078903,((Parahemionitis_cordata_ZXJO:0.01118829,(Vittaria_lineata_SKYV:0.03733843,Vittaria_appalachiana_NDUV:0.00967037):0.20550602):0.00847565,(Notholaena_montieliae_YCKE:0.04090038,Gaga_arizonica_DCDT:0.01764351):1.0E-8):0.00552228):0.0048493,(Adiantum_aleuticum_WCLG:0.05213284,(Myriopteris_rufa_GSXD:1.0E-8,(Equisetum_diffusum_CAPN:1.0E-8,Equisetum_hyemale_JVSZ:0.09042275):0.60330559):0.01377035):0.00961479):0.02221192):0.05051476):0.0325065,(Pilularia_globulifera_KIIX:0.12127171,(Thyrsopteris_elegans_EWXK:0.05223865,((Plagiogyria_japonica_UWOD:0.03556718,Culcita_macrocarpa_PNZO:0.01162708):0.03999556,Alsophila_spinulosa_GANB:0.08674801):0.00386448):0.07469089):0.0371998):0.04020585):0.15857305,(((Hymenophyllum_cupressiforme_TRPJ:0.00514315,Hymenophyllum_bivalve_QIAD:0.00905971):0.04243126,Crepidomanes_venosum:0.0471382):0.11419621,(Sticherus_lobatus_XDVM:0.17207037,(Dipteris_conjugata_MEKP:0.12996546,((((((Tmesipteris_parva_ALVQ:0.05748769,Psilotum_nudum_QVMR:0.02066869):0.34382027,(Botrypus_virginianus_BEGM:0.19631156,Sceptridium_dissectum_EEAQ:0.01031687):0.06289808):0.09213355,Ophioglossum_sp_QHVS:0.23454681):0.22263712,Angiopteris_evecta_NHCM:0.26013414):0.07180057,((Encephalartos_barteri_GNQG:0.13310301,((Arabidopsis_thaliana_AT1G49140:0.35775356,Aquilegia_coerula_Aquca_00292.1:0.08022409):0.15400399,(Amborella_trichopoda_scaffold00079.32:0.2220578,(Zea_mays_GRMZM2G173277_T02:0.36669064,Peperomia_fraseri_XSZI:0.25756307):0.18627197):0.15228857):0.26071443):0.11157083,Cryptomeria_japonica_DSXO:0.1492197):0.52740134):0.13783043,Osmunda_sp_UOMY:0.10238167):0.07509554):0.04353027):0.01644105):0.19235019):0.09144616,Lygodium_japonicum_PBUU:0.07884334); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr87512] END;