#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 15, 2026; 7:55 GMT TreeBASE (cc) 1994-2008 Study reference: Ortiz-garcía S., Gernandt D., Stone J., Johnston P., Chapela I., Salas-lizana R., & Alvarez-buylla E. 2003. Phylogenetics of Lophodermium from pine. Mycologia, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S961] [ The following blocks are input data for analysis step 1623 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1623; DIMENSIONS NTAX=37; TAXLABELS Colpoma_quercinum Elytroderma_deformans Leptostroma_decipiens Leptostroma_decipiens_2 Leptostroma_sp Lirula_macrospora Lophodermium_actinothyrium1 Lophodermium_agathidis Lophodermium_agathidis_2 Lophodermium_australe Lophodermium_australe_2 Lophodermium_baculiferum Lophodermium_baculiferum_2 Lophodermium_baculiferum_3 Lophodermium_baculiferum_4 Lophodermium_conigenum Lophodermium_conigenum_2 Lophodermium_indianum Lophodermium_indianum_2 Lophodermium_molitoris Lophodermium_nitens Lophodermium_nitens_BRMC17M Lophodermium_nitens_NS4 Lophodermium_picea Lophodermium_pinastri Lophodermium_pinastri_2 Lophodermium_seditiosum Lophodermium_sp_3 Lophodermium_sp_4 Lophodermium_sp_5 Lophodermium_sp._1 Lophodermium_sp2 Meloderma_desmazieri_CBS Meloderma_desmazieri_MD3 Terriera_1 Terriera_2 Tryblidiopsis_pinastri ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M112] TITLE nr_ITS_region; LINK TAXA = TaxaForAnalysisStep1623; DIMENSIONS NCHAR=484; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=- GAP= "; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Colpoma_quercinum AAGAA-TA-CA-GGC-TTCGCGGCCGCT-ATTCTCCTTCTT-TGTATACC-AAACT-TTGTTGCTTTGGCAGGCCCCTGGC--TTCG---GCTGGATAGCGCCTGCCAGAGGACC-AAAACCCTTGAATCTTTGCCGTCTGAGT-ATTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCCCTGGTATTCCGGGGAGCATGCCTGTTCGAGCGTCATTACAACCCTCACGCCCAGCGTGGTATTGGGCT-CGCCCTG-T------AGGGCTTGCCTCAAAGTCAGTGGCGG-CACCGTCTGACCCT-AAGCGTAGTAA-TACTCGTCGCTT-TTGGGCTTGGGCGGGC--GCTCGCT---AGCAACCCCC-AC-CATT--AAAGG Elytroderma_deformans AAGAA-TTAC-GGG-CTTTCGGGCCCTCTATTCTCACCCTT-TGTTTACCA-CACT-TTGTTGCCTTGGCGC---------------------------CTAGCGCCAGCGGA-TCAAAACCCTTGAATCATTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCAGCTTGGTGTTGGGCT-CGCCCCG-CTTACCCGGGGCTTGCCTCAAAATCAGTAGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TACTCGTCGC-TCGGAGGGAAAGACGGTA--T-CGTTAACCCG-AACCCCC-------ACACAAGG Leptostroma_decipiens AAGAA-T-ACACGG-CCTCACGGC-CCT-ATTCTCACCCTT-TGTATAC-TTAACT-TTGTTGCTTTGGCGG----------------------------AAACGTCAGAGGACC-GAAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCC-TCC--------GGGCTTGCCTCAAAGTCAGTGGCGG-CACCGTCTGACCTT-AAGCGCAGTAA-TACTCGCCGCTTG-TAGAATCAGGAGGAT-AGCTTGCTA--AG-AACCCCC-A-TCAT-ACAAA-G Leptostroma_decipiens_2 AAGAA-T-ACACGG-CCTCACGGC-CCT-ATTCTCACCCTT-TGTATAC-TTAACT-TTGTTGCTTTGGCGG----------------------------AAACGTCAGAGGACC-GAAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCC-TCC--------GGGCTTGCCTCAAAGTCAGTGGCGG-CACCGTCTGACCTT-AAGCGCAGTAA-TACTCGCCGCTTG-TAGAATCAGGAGGAT-AGCTTGCTA--AG-AACCCCC-A-TCAT-ACAAA-G Leptostroma_sp AAGAA-T-ACATGG-CCTTCGGG-TCCT-ATTCTCACCCTT-TGTCTACCAAAACTCTTGTTGCCTTGGCGC----------------------ATTCGT--GCGCCAAAGGAATC-AAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCC-TGCTCT-----GGCCT-GCCTCAAAATCAGTGGCGG-CACAGTCCGATCCTCAAGCGCAGTAA-TACACGACGCTTGCC--GGT--GAAGATT--GCTGCTCC--AGAAACCCCCCAC--AAACTAAAGG Lirula_macrospora AAGAA-TATCA-GGCCTT-ACAGCC-CT-ATTCTCACCCAA-TGTATTTG-AAACT-TTGTTGCTTTGGCAGGCCCCTGGC--TCCG---GCTGGACAGCGCCTGCCAGAGGATCT-AAACCCTTGAATCTCTGCTGTCTGAGTTACTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCACGCTTTGCGTGGTGTTGGGCCT-GCCC-CCT----AAAGGGCTTGCCTCAAAATCAGTGGCGGCCGCTGTTCGACCCT-AAGCGTAGTAACTATTCGTCGCTT-CTGGG-TGAGA--G-CAAGCCTGCT---AG-AACCCCC-A--C-TT-CAAAGG Lophodermium_actinothyrium1 AAGAA-T-CGGTGGCCCTCGCGGCCCC--ATTCTCACCCTT-TGCGTACCTAAACTACAGTTGCTTTGGCCGGCCTCCGG--------------------GCCGGCCAGAGGACCT-AAACCCTTGAATCATTGCTGTCTGAGT-ACTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCCGCTTGGTGTTGGGCT-CGCCCCCC----CGG-GGGCCTGCCTCAAAGTCAGTGGCGG-CCCCGTCCGGTC-TCAAGCGCAGTAA-TGCTCGTCGCTTGTCAGGCCCGGGCGG-C--GGTTGGCC--AGCAACCCCCCATACTTTAC-AAGG Lophodermium_agathidis AAGAAAT--GGCGGCCCTCGTGGTCCC--GTTTTCACCCTG-TGCATACGATAT-TCTAGTTGCTTCGGCCAGCCGCAAG--------------------GCCGGCCAGAAGACCTGAAACTCTTGAATTTTTGCCGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCTTCGCC-TCT-C--CGGA-GGCCGGCCTCAAATTCAGTGGCGG-TTCCGTCCGGTC-TCAAGCGCAGTAA-TGCTCGTCGCTTGCTAGGCTTGGGCGG-C-GGCTTGCCA--T-CTACCCCC-A-ATTTTACAAAGG Lophodermium_agathidis_2 AAGAAAT--GGTGGCCCTCGTGGCCCC--GTTTTCACCCTA-TGCATACGATAT-TCTAGTTGCTTCGGCCAGCCGCAAG--------------------GCCGGTCGGAAGACCTGAAACTCTTGAATTTTTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCTTCGCCCCCC----CGGA-GGCCGGCCTCAAATTCAGTGGCGG-TTCCGTCCGGTC-TCAAGCGCAGTAA-TACTCGTCGCTTGCTAGGCTTGGGCGG-C-AGCTTGCTA--TGTTACCCCC-A-ATTTTACAAAGG Lophodermium_australe CAGAA-GGATAT-CGCCCTCGGGCTTCT-CTTCTCACCCTT-TGTTTACCA-CAC-GTAGTTGCCTTGGCGC---------------------------TCCGCGCCAGTGGA-TCGAAACTCCTGAATCATTGCCGTCTGAGT-ACTATTCAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGCC-CGCCCCGGCCTGCCCGGGGCTCGCTTCAAAGTCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGCCGC-TGTTAGGGAAGGGTAGCAAGGGCCGTCAT--ACAACCCCC-----ACACACAAGG Lophodermium_australe_2 CAGAA-GGATAT-CGCCCTCGGGCTTCT-CTTCTCACCCTT-TGTTTACCA-CAC-GTAGTTGCCTTGGCGC---------------------------TCCGCGCCAGTGGA-TCGAAACTCCTGAATCATTGCCGTCTGAGT-ACTATTCAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGCC-CGCCCCGGCCTGCCCGGGGCTCGCTTCAAAGTCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGTCGC-TGTTAGGGAAGGGTAGCAAGGGCCGTCAT--ACAACCCCC-----ACACACAAGG Lophodermium_baculiferum AAGAA-T-ACACGG-CCTCACGGC-CCT-ATTCTCACCCTT-TGTATAC-TTAACT-TTGTTGCTTTGGCGG----------------------------AAACGTCAGAGGACC-GAAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCC-TCC--------GGGCTTGCCTCAAAGTCAGTGGCGG-CACCGTCTGACCTT-AAGCGCAGTAA-TACTCGCCGCTTG-TAGAATCAGGAGGAT-AGCTTGCTA--AG-AACCCCC-A-TCAT-ACAAAGG Lophodermium_baculiferum_2 AAGAA-T-ACCGGGCCCTCCGGGGCCCTCATTCTAACCCTT-TGTCTATCT-AACT-TTGTTGCTTTGGCGG------------------------T--AAAACGCCAGAGGACC-GAAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCTCCGCC-TCC--------GGGCTGGCCTAAAAATCAGTGGCGG-CACAGTCTGACCTT-AAGCGCAGTAA-TACTCGTCGCTTG-TAGGCTCAGGTTG-C-GGCTTGCTA--AACAACCCCC-AC-CAT-AC-AAGG Lophodermium_baculiferum_3 AAGAA-TAACAAGG-CCTCCGGGC-CCT-ATTCTCACCCTT-TGTATAC-TTAACT-TTGTTGCTTTGGCGG----------------------------AAACGTCAGAGGACC-GAAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCGTCTGGTATTCCGGACGGTATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCC-TCC--------GGGCTTGCCTCAAAGTCAGTGGCGG-CACCGTCTGACCTT-AAGCGCAGTAA-TTACCGCCGCTTG-TAGGACCAGAGGGAT-GGCTCGCTA--AG-AACCCCC-ACT-TT-ACAAAGG Lophodermium_baculiferum_4 AAGAA-TAACAAGG-CCTCCGGGC-CCT-ATTCTCACCCTT-TGTATAC-TTAACT-TTGTTGCTTTGGCGG----------------------------AAACGTCAGAGGACC-GAAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCGTCTGGTATTCCGGACGGTATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCC-TCC--------GGGCTTGCCTCAAAGTCAGTGGCGG-CACCGTCTGACCTT-AAGCGCAGTAA-TTACCGCCGCTTG-TAGGACCAGAGGGAT-GGCTCGCTA--AG-AACCCCC-ACT-TT-ACAATGG Lophodermium_conigenum CAGAA-GGATAT-CGCCCTCGGGCTTCT-CTTCTCACCCTT-TGTTTACCA-CAC-GTAGTTGCCTTGGCGC---------------------------TCCGCGCCAGTGGA-TCGAAACTCCTGAATCATTGCCGTCTGAGT-ACTATTCAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGCC-CGCCCCGGCCTGCCCGGGGCTCGCTTCAAAGTCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGCCGC-TGTTAGGGAAGGGCAGCAAGGGCCGTCAT--ACAACCCCC-----ACACACAAGG Lophodermium_conigenum_2 CAGAA-GGATAT-CGCCCTCGGGCTTCT-CTTCTCACCCTT-TGTTTACCA-CAC-GTAGTTGCCTTGGCGC---------------------------TCCGCGCCAGTGGA-TCGAAACTCCTGAATCATTGCCGTCTGAGT-ACTATTCAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGCC-CGCCCCGGCCTGCCCGGGGCTCGCTTCAAAGTCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGCCGC-TGTTAGGGAAGGGCAGCAAGGGCCGTCAT--ACAACCCCC-----ACACACAAGG Lophodermium_indianum CAGAA-GAAAGCACGCCTTCGGGCTCCT-CTTCTCACCCTT-TGTTTACCA-CACT-TAGTTGCCTTGGCGC---------------------------ACCGCGCCAGTGGA-TCGAAACTCGTGAATCATTGCCGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGCC-CGCCCCG-CTTACCCGGGGCTCGCTTCAAAATCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGTCGC-TGGTAGGGAAGGGCAGCAAGGGCCGTCAT--CCAACCCCC-ACACACACACAAGG Lophodermium_indianum_2 CAGAA-GAAAGCACGCCTTCGGGCTCCT-CTTCTCACCCTT-TGTTTACCA-CACT-TAGTTGCCTTGGCGC---------------------------ATCGCGCCAGTGGA-TCAAAACTCGTGAATCATTGCCGTCTGAGT-ACTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGCC-CGCCCCG-CTTACCCGGGGCTCGCTTCAAAATCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGTCGC-TGGTAGGGAAGGGCAGCAAGGGCCGTCAT--CCAACCCCC-----ACACACAAGG Lophodermium_molitoris AAGAA-TAACAGGG-TCTTCGGGCCCCT-ATTCACACCCTTATGTCTACCT-AACT-TTGTTGCTTTGGCGG----------------------------AAACGTCAGAGGACCT-AAACTCTAGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGTT-CGCC-TCC--------GGGCTTACCTCAAAATCAGTGGCGGCCTCGG-CTGACA-TCAAGCGTAGTAA-TACTCGTCGCTTGG-AGAATCAGTCGTAA-AGCCTGCT---AGCAACCCCC-ACACTATACT-AGG Lophodermium_nitens AAGAA-T-ACATGG-CCTTCGGG-TCCT-ATTCTCACCCTT-TGTCTACCAAAACTCTTGTTGCCTTGGCGC----------------------ATTCGT--GCGCCAAAGGAATC-AAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGTC-TCCTCT-----GGCCT-GCCTCAAAATCAGTGGCGG-CACAGTCCGATCCTCAAGCGCAGTAA-CACACGACGCTTGCC--GGT--GAAGGTT--GCTGCTCC--AGAAACCCCCCAC--AAACTAAAGG Lophodermium_nitens_BRMC17M --------------------------------------------CCTACCAACCCTCTTGTTGCCTTGGCGC----------------------ATTCGT--GCGCCAAAGGAATT-TTTTCCTTGAATCTCTGCTGGCTGAGT-ACTATATAAGAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCC-TCCTTT-----GGCCT-GCCTCAAAATCAGTGGCGG-CACAGTCCGATCCTCAAGCGCAGTAA-TACACGACGCTTGCT--GGC--GAAGGTT--GCTGCTCC--AGAAACCCCCCAC--AAACTAAAGG Lophodermium_nitens_NS4 --------------------------------------------TTTACCAAAACTCTTGTTGCCTTGGCGC----------------------ATTCGT--GCGCCAAAGGAATC-AAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCC-TCCTTT-----GGCCT-GCCTCAAAATCAGTGGCGG-CACAGTCCGATCCTCAAGCGCAGTAA-TACACGACGCTTGCC--GGT--GAAGGTT--GCTGCTCC--AGAAACCCCCCAC--AAACTAAAGG Lophodermium_picea AAGAA-TTT-AC-GTCTTC--GGACGCT-ATTCTCACCCTT-TGTATA--TTAACT-TTGTTGCTTTGGCAGGCCTCCGGC--TTCG---GCTGGGTCGTGTCTGCCAGAGG-CCT--AACTCTTGAATCACTGCGGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAATTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGGGCT-CGCCCTG-T------AGGGCCTGCCTCAAAGTCAGTGGCGG-CACCGTCTGACCCT-AAGCGTAGTAA-TACTCGCCGCTTG-TGGACTCAG-CG--CGTGGCCTGCCA-GCCAACCCCC-AC-CAT--C-AAGG Lophodermium_pinastri AAGAA-TAAACGGG-CCTCCGGGCCCCCTATTCTCACCCTT-TGCCTACCA-TAC-ATTGTTGCCTTGGCGC--------------------------CTCG-CGCCAGTGGACA-GAAACCCTTGAATCATTGCCGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCCGCTTGGTGTTGGGCT-CGCCCTC---TA----GGGCTTGCCTCAAAATCAGTGGCGGCCACAGCCCGACCTCT-AGCGCAGTAC-TACTCGTCGC-TGGAAGG-AGAGGCC-TA--GGCGCT-ATG-ACAACCCCC----TTTTTACAAGG Lophodermium_pinastri_2 AAGAA-TAACCGGG-CCTTCGGGCCCCCTATTCTCACCCTT-TGTCTACCA-CACT-TTGTTGCCTTGGCGC--------------------------TTCGGCGCCAGTGGAA-CGAAACCCTGGAATCATTGCTGTCTGAAT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCCCTG---TA---GGGCCT-GCCTCAAAATCAGTGGCGGCCACCGTCCGACCTTC-AGCGCAGTAA-TGCTCGTCGC-TGTAAGGGA-GGGCCGAA--G-CCGTCATG-ACAACCCCC-AC---TTTACAAGG Lophodermium_seditiosum TAGAA-T-ACACGCGCC-GCGAGGTGCT-ATTCTCACCCTT-TGTTTACCA-CACTC-AGTTGCCTTGGCGC---------------------------ACAGCGCCAGCGGA-TTGAAACTCCTGAATCATTGCTGTCTGAGT-ACTATTCAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGGGCT-CGCCTTCGTC-ACGAAGGCCT-GCCTCAAAATCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGTCGC-TGGTAGGGAAGGACAGCAGGTGCCGTCAGC-ACAACCCCC-----ACATACAAGG Lophodermium_sp_3 AAGAAAGGAT----GCCTTCGGGCTCA--CTTCTCACCCTT-TGTTTACCA-CAC-CTAGTTGCCTTGGCGC---------------------------ACAGCGCCAGTGGA-TCGAAACCCATGAATCATTGCTGTCTGAGT-ACTATTCAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGCC-CGCCCCGGC-TACCCGGGGCTCGCTTCAAAATCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGTCGC-TGTTAGGGAAGGGCAGCAAGTGCCGTCATGTACAACCCCC---ACACACACAAGG Lophodermium_sp_4 AAGAA-T-ACATGG-CCTTCGGG-TCCT-ATTCTCACCCTT-TGTCTACCAAAACTCTTGTTGCCTTGGCGC----------------------ATTCGT--GCGCCAAAGGAATC-AAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCC-TGCTCT-----GGCCT-GCCTCAAAATCAGTGGCGG-CACAGTCCGATCCTCAAGCGCAGTAA-TACACGACGCTTGCC--GGT--GAAGATT--GCTGCTCC--AGAAACCCCCCAC--AAACTAAAGG Lophodermium_sp_5 AAGAA-TAACAGGG-TCTTCGGGCCCCT-ATTCTCACCCTT-TGTATACCT-AACT-TTGTTGCTTTGGCGG----------------------------AAACGTCAAGGGACCT-AAACCCTCGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGTT-CGCC-TCC--------GGGCTTACCTCAAAATCAGTGGCGGCCTC-GTCTGACC-TCAAGCGTAGTAA-TACTCGTCGCTTGG-AGAATCAGGCGGGT--GCTTGCT---ATCAACCCCC-AC-C-ATACT-AGG Lophodermium_sp._1 CAGAA-GAACACACGCCTTCGGGCTCGT-CTTCTCACCCTT-TGTTTACCA-CACT-TAGTTGCCTTGGCGC---------------------------ACCGCGCCAGTGGA-TCGAAACTCCTGAATCATTGCCGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGCC-CGCCCCG-CTTACCCGGGGCTCGCTTCAAAATCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGTCGC-TGGTAGGGAAGGGCAGCAAGGGCCGTCAT--CCAACCCCC-ACACACACACAAGG Lophodermium_sp2 CAGAA-GAACACAAGCCTTCGGGCTCAT-CTTCTCACCCTT-TGTTTACCA-CACT-TAGTTGCCTTGGCGC---------------------------ATCGCGCCAGTGGA-TCGAAACTCGTGAATCATTGCCGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGCC-CGCCCCG-CTTACCCGGGGCTCGCTTCAAAATCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGTCGC-TGGTAGGGAAGGGCAGCAAGGGCCGTCAT--CCAACCCCC---ACACACACAAGG Meloderma_desmazieri_CBS AAGAA-T-ACATGG-CCTTCGGG-TCCT-ATTCTCACCCTT-TGTTTACCAAAACTCTTGTTGCCTTGGCGC----------------------ATTCGT--GCGCCAAAGGAATC-AAACCCTTGAATCTCTGCTGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCT-CGCC-TCCTCT-----GGCCT-GCCTCAAAATCAGTGGCGG-CACAGTCCGATCCTCAAGCGCAGTAA-TACACGACGCTTGCC--GGT--GAAGGTT--GCTGCTCC--AGAAACCCCCCAC--AAACTAAAGG Meloderma_desmazieri_MD3 --------------------------------------------TTTACCA-CAC-GTAGTTGCCTTGGCGC---------------------------ACCGCGCCAGTGGA-TCGAAACTCCTGAATCATTGCCGTGTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTGTTGAGCC-CGCCCCG-CTTACCCGGGGCTCGCTTCAAAATCAGTGGCGGCCGCCGTCCGACCTTC-AGCGCAGTAA-TGCTCGTCGC-TGGTAGGGAAGGGCAGCAAGGGCCGTCAT--CCAACCCCC---ACACACACAAGG Terriera_1 AAGAA-TA-CA-GGC-TTCACGGCCGCT-ATTCTCACCCTT-TGTATACAAAAACT-T-GTTGCTTTGGCAGGCCTCCGGCGCTCCAGGCGCTGGGTTGCGCCTGCCAGAGGATTT-AAACCCTGGAATCATTGCTGTCTGAGT-ATTACTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTTTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTTGAGCGTCATTACAACCCTCACGCTTCGCGTGGTATTGGGCT-CGCC-TGCTC-----A-GGCTTGCCTTAAAATCAGTGGCGG-CGGCATCGAACCCT-AAGCGTAGTAA-TACTCGCAGCTT-CTGGGAGCCGGTGG-C-AGCTTGCTA--ACAAACCCCC-A-ATTTTT-AAAGG Terriera_2 AAGAA-TA-CA-GGC-TTCACGGCCGCT-ATTCTCACCCTT-TGTAAACAAAAACT-T-GTTGCTTTGGCAGGCCTCCGGCGCTCCGCGCGCTGGGCTGCGCCTGCCAGAGGATTT-AAACCCTAGAATCACTGCTGTCTGAGT-ATTACTTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTTTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTTGAGCGTCATTACAACCCTCACGCTTCGCGTGGTATTGGGCT-CGCC-TGCTC-----A-GGCTTGCCTTAAAATCAGTGGCGG-CGGCATCGAACCCT-AAGCGTAGTAA-TACTCGCAGCTT-CTGGGAGCCGGTGG-C-AGCTTGCTA--ACAAACCCCC-A-ATTTTT-AAAGG Tryblidiopsis_pinastri AAGAA-TATC--GGCC-TCACGGCC-CT-GTTCTCACCCAA-TGTATACC-CAACTCTTGTTGCTTTGGCAGGCCCCTGGC--TCCG---GCTGGATCGCGCCTGCCAGAGGACGT-AAACTCTGGAATCTTTGCCGTCTGAGT-ACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCACGCCCAGCGTGGTATTGGGCTCCGCC-T--TC----GA-GGCGGGCCTCAAAGTCAGTGGCGG-CACTGCCGGACCCT-AAGCGTAGTA-CTACTCGTCGCTTGTTGGGCTTCCGGCAGC-AGCCTGCC---AGCAACCCCC-A-TTTTTTCAA-GG ; END; [ The following blocks are output data for analysis step 1623 ] BEGIN TREES; TITLE Tb6399; LINK TAXA = TaxaForAnalysisStep1623; TREE ITS_tree = [&R] (((((((((((((Lophodermium_indianum_2,(Lophodermium_indianum,(Lophodermium_sp2,(Lophodermium_sp._1,Meloderma_desmazieri_MD3)))),(Lophodermium_australe_2,(Lophodermium_australe,(Lophodermium_conigenum,Lophodermium_conigenum_2)))),Lophodermium_sp_3),Lophodermium_seditiosum),Elytroderma_deformans),(Lophodermium_pinastri,Lophodermium_pinastri_2)),(Lophodermium_nitens_BRMC17M,(Lophodermium_nitens,(Lophodermium_sp_4,Leptostroma_sp),(Meloderma_desmazieri_CBS,Lophodermium_nitens_NS4)))),Lophodermium_baculiferum_2),(((Leptostroma_decipiens,Leptostroma_decipiens_2,Lophodermium_baculiferum),(Lophodermium_baculiferum_4,Lophodermium_baculiferum_3)),(Lophodermium_molitoris,Lophodermium_sp_5)))Lophodermium_pine_clade,(Lophodermium_actinothyrium1,(Lophodermium_agathidis,Lophodermium_agathidis_2))),Lophodermium_picea)Lophodermium,(Lirula_macrospora,(Terriera_1,Terriera_2))),(Tryblidiopsis_pinastri,Colpoma_quercinum)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr882] END;