#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 13, 2026; 15:36 GMT

TreeBASE (cc) 1994-2008

Study reference:
Visagie C. 2016. Fifteen new species of Penicillium. Persoonia, 36: 247–280.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18638]

[ The following blocks are input data for analysis step 17488 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep17488;
        DIMENSIONS NTAX=29;
        TAXLABELS
            Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122
            Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121
            Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na
            Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na
            Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na
            Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na
            Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400
            Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417
            Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418
            Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414
            Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415
            Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416
            Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702
            Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445
            Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399
            Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419
            Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079
            Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082
            Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759
            Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852
            Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850
            Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851
            Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699
            Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291
            Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402
            Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711
            Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443
            Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444
            Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M34571]

	TITLE Charlesia_ITS;
	LINK TAXA = TaxaForAnalysisStep17488;
	DIMENSIONS NCHAR=532;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530  ]
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Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122                         CGAGTGAGGGCCCTCTGGGTCCAACCTCCCACCCGTGTCTATTGTACCTTGTTGCTTCGGTGGGCCCGCCT---TTA--TGGCCGCCGGGGGGCATCTGCCCCCGGGTCCGCGCCCGCCGAAGACACC-CCTGAACGCTGTCTGAAGATTGCAGTCTGAGCAGATTAGCTAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGCCCCCCGGTCTCGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTGTAGGCCCGGCCGGCGCCCGCCGGCGACCCCAATCA-----ATCTATCCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121                     CGAGTGAGGGCCCTCTGGGTCCAACCTCCCACCCGTGTCTATTGTACCTTGTTGCTTCGGTGGTCCCGCCT---TCA--TGGCCGCCGGGGGGCATCCGCCCCCGGGCCCGCGCCCGCCGAAGACACC-CCTGAACGCTGTCTGAAGATTGCAGTCTGAGCAGATTAGCTAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGCCCCCCGGTCTCGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTGTAGGCCCGGCCGGCGCCCGCCGGCGACCCCAATCA-----ATCTATCCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na                          CGAGTGAGGGCCCTCTGGGTCCAACCTCCCACCCGTGTCTCTTGTACCTTGTTGCTTCGGTGGGCCCGCCT---TCA--TGGCCGCCGGGGGGCATCCGCCCCCGGGCCCGCGCCCGCCGAAGACACC-CCTGAACGCTGTCTGAAGATTGCAGTCTGAGCAGATTAGCTAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGCCCCCCGGTCTCGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTGTAGGCCCGGCCGGCGCCCGCCGGCGACCCCAATCA-----ATCTATCCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na                           CGAGTGAGGGCCCTCTGGGTCCAACCTCCCACCCGTGTCTCTTGTACCTTGTTGCTTCGGTGGGCCCGCCT---TCA--TGGCCGCCGGGGGGCATCCGCCCCCGGGCCCGCGCCCGCCGAAGACACC-CCTGAACGCTGTCTGAAGATTGCAGTCTGAGCAGATTAGCTAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGCCCCCCGGTCTCGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTGTAGGCCCGGCCGGCGCCCGCCGGCGACCCCAATCA-----ATCTATCCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na                          CGAGTGAGGGCCCTCTGGGTCCAACCTCCCACCCGTGTCTCTTGTACCTTGTTGCTTCGGTGGGCCCGCCT---TCA--TGGCCGCCGGGGGGCATCCGCCCCCGGGCCCGCGCCCGCCGAAGACACC-CCTGAACGCTGTCTGAAGATTGCAGTCTGAGCAGATTAGCTAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGCCCCCCGGTCTCGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTGTAGGCCCGGCCGGCGCCCGCCGGCGACCCCAATCA-----ATCTATCCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na                            CGAGTGAGGGCCCTCCGGGTCCAACCTCCCACCCGTGTTTAACGAACCTGGTTGCTTCGGCGGGCCTGCCG---TCC--AGGCTGTCCGGGGGCTCACGCCCCCGGGCCCGCGCCCGCCGGAGACCCCAATCGAACGCTGTCTGAAGTATGCAGTCTGAGCTTTTAAGCAAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTTCTGCCCTCCAGCCCGGCTGGTGTTTGGGCCCCCGTCCCCCC-------GGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACTCGCTCTGTAGGCCCGGCCGGCGCCTGCC----TCGTCAACCA----TTCTTTCTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400                     TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GTC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-AACGAACTC---TTGTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCC--CAACC---TTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417                         TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GTC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-AACGAACTC---TTGTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCC--CAACC---TTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418                         TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GTC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-AACGAACTC---TTGTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCC--CAACC---TTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414                         TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GTC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-AACGAACTC---TTGTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCC--CAACC--TTTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415                         TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GTC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-AACGAACTC---TTGTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCC--CAACC--TTTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416                         TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GTC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-AACGAACTC---TTGTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCC--CAACC--TTTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702                       TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACCGTACCTTGTTGCTTCGGCGGGCCCGCCA---GTC--CGGCCGCCGGGGGGCACCCGCCCCCGGGCCCGCGCCCGCCGAAGACACC--CTGAACGCTGTCTGAAGATTGCAGTCTGAGCGATAAGCACAAATTAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCCCGGCTTG-GTCTTGGGTGCCGTCCCCCC----CGGGGGGACGCGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCCGCAGGCCCGGCCGGCGCCAGCCGACCCCCCAA--------TCTTTCTTTAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445                         CGAGTGAGGGCCCTCTGGGTCCAACCTCCCACCCGTGTCTATTGTACCTTGTTGCTTCGGCGGGCCCGCCA---TCATGTGGCCGCCGGGGGGCATCTGCCCCCGGGCCCGCGCCCGCCGAAGACACC-CCTGAACGCTGTCTGAAGATTGCAGTCTGAGCAGATTAGCTAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGCCCCCCGGTCTCGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTGTAGGCCCGGCCGGCGCCCGCCGGCGACCCCAATCA-----ATCTATCCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399                    TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GCC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-CACGAACTCT--TTCTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCCTCCAACCTTTTTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419                        TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GCC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-CACGAACTCT--TTCTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCCTCCAACC---TTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079                     TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GCC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-CACGAACTCT--TTCTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCCTCCAACC--TTTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082                     TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GCC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-CACGAACTCT--TTCTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCCTCCAACC---TTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759     TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GCC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-CACGAACTCT--TTCTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCCTCCAACC---TTTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852                    TGAGTGCAGGCCCTCTGGGTCTAACCTCCCACCCGTGTCTATTGTACCTTGTTGCTTCGGTGGGCCCGCCTGACGCC--AGGCCGCCGGGGGGCAC---TCCCCGGGCGCGCGCCCGCCGAAGACACC-CTGGAACTCTGTCTG-TGAGTGTTGTCTGAGTGG--GATTGTAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCACCCCTCAAGCCCGGCTTGT-CCTTGGGTTGTGTCCCTCCGTTCCGGGGGGACAGGCCTCAAATGCAATGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTTTGTAGGCCGGCCGGTCGCTTGCC-----CGTCAAGCA----CAACTTCTTATGTTGACCTCGGATCAGGTAGGGA
Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850                     TGAGTGCAGGCCCTCTGGGTCTAACCTCCCACCCGTGTCTATTGTACCTTGTTGCTTCGGTGGGCCCGCCTGACGCC--AGGCCGCCGGGGGGCAC---TCCCCGGGCGCGCGCCCGCCGAAGACACC-CTGGAACTCTGTCTG-TGAGTGTTGTCTGAGTGG--GATTGTAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCACCCCTCAAGCCCGGCTTGT-CCTTGGGTTGTGTCCCTCCGTTCCGGGGGGACAGGCCTCAAATGCAATGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTTTGTAGGCCGGCCGGTCGCTTGCC-----CGTCAAGCA----CAACTTCTTATGTTGACCTCGGATCAGGTAGGGA
Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851                     TGAGTGCAGGCCCTCTGGGTCTAACCTCCCACCCGTGTCTATTGTACCTTGTTGCTTCGGTGGGCCCGCCTGACGCC--AGGCCGCCGGGGGGCAC---TCCCCGGGCGCGCGCCCGCCGAAGACACC-CTGGAACTCTGTCTG-TGAGTGTTGTCTGAGTGG--GATTGTAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCACCCCTCAAGCCCGGCTTGT-CCTTGGGTTGTGTCCCTCCGTTCCGGGGGGACAGGCCTCAAATGCAATGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTTTGTAGGCCGGCCGGTCGCTTGCC-----CGTCAAGCA----CAACTTCTTATGTTGACCTCGGATCAGGTAGGGA
Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699                       TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACCGTACCTTGTTGCTTCGGCGGGCCCGCCA---GCCT-TGGCCGCCGGGGGGCACCCGCCCCCGGGCCCGCGCCCGCCGAAGACATC-ATCGAACGCTGTCTGAAGATTGCAGTCTGAGCGATAAGCACAAATTAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGTCCCCCC-------GGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTCTGTCACCCGCTCTGCAGGCCCGGCCGGCGCCAGCCGACCCCATCAACCC---TTCTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291            TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACCGTACCTTGTTGCTTCGGCGGGCCCGCCA---GCCT-TGGCCGCCGGGGGGCACCCGCCCCCGGGCCCGCGCCCGCCGAAGACATC-ATCGAACGCTGTCTGAAGATTGCAGTCTGAGCGATAAGCACAAATTAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGTCCCCCC-------GGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTCTGTCACCCGCTCTGCAGGCCCGGCCGGCGCCAGCCGACCCCATCAACCC---TTCTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402                    TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACT-TACCGTGTTGCTTCGGCGGGCCCGCCT---GCC--AGGCCGCCGGGGGGCAACCGCCCCCGGGCCCGCGCCCGCCGAAGACCCC-CACGAACTCT--TTCTACCTTGCAGTCTGAGCGATAAGCATAAATTA-TTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTACTGCCCTCAAGCCCGGCTTGTGTGTTGGGCGCCGCCCCCCC-------GGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGC-CCGTAGGCCCGGCCGGCGCCCGCCGACCCCCTCCAACC----TTTTTTTTCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711                    TGAGTGCGGGCCCTCTGGGTCCAACCTCCCACCCGTGTATACCGTACCCTGTTGCTTCGGCGGGCCCGCCG---TTC--TGGCCGCCGGGGGGCATCCGCCCCCGGGCCCGCGCCCGCCGAAGACACC--CTGAACGCTGTCTGAAGATTGCAGTCTGAGCGATAAGCACAAATTAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCCCGGCTTG-GTCTTGGGTGCCGCCCCCCC-------GGGGGCGCGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTTCGTAGGCCCGGCCGGCGCCAGCCGACCCCCCAA--------TCTTTCTTTAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443                         CGAGTGAGGGCCCTCTGGGTCCAACCTCCCACCCGTGTCTATTGTACCTTGTTGCTTCGGTGGGCCCGCCT---TTA--TGGCCGCCGGGGGGCATCCGCCCCCGGGCCCGCGCCCGCCGAAGACACC-CCTGAACGCTGTCTGAAGATTGCAGTCTGAGCAGATTAGCTAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGCCCCCCGGTCTCGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTGTAAGCCCGGCCGGCGCCCGCCGGCAACCCCAATCA-----ATCTATCCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444                       CGAGTGAGGGCCCTCTGGGTCCAACCTCCCACCCGTGTCTCTTGTACCTTGTTGCTTCGGTGGGCCCGCCG---TCA--TGGCCGCCGGGGGGCATCCGCCCCCGGGCCCGCGCCCGCCGAAGACACC-CCTGAACGCTGTCTGAAGATTGCAGTCTGAGCAGATTAGCTAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGCCCCCCGAGACCGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTGTAGGCCCGGCCGGCGCCCGCCGGCAACCCCAATCA-----ATCTATCCAGGTTGACCTCGGATCAGGTAGGGA
Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120                    CGAGTGAGGGCCCTCTGGGTCCAACCTCCCACCCGTGTCTCTTGTACCTTGTTGCTTCGGTGGGCCCGCCG---TCA--TGGCCGCCGGGGGGCATCCGCCCCCGGGCCCGCGCCCGCCGAAGACACC-CCTGAACGCTGTCTGAAGATTGCAGTCTGAGCAGATTAGCTAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGCCCCCCGGCCTCGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTGTAGGCCCGGCCGGCGCCCGCCGGCGACCCCAATCA-----ATCTATCCAGGTTGACCTCGGATCAGGTAGGGA
;
END;

[ The following blocks are output data for analysis step 17488 ]
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_8 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,(((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):1.0,Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92725]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_23 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,((Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:5.0):1.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):1.0):2.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:2.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92740]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_22 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(((Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:5.0):2.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92739]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_20 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:2.0,(Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:5.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):2.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:2.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92737]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_15 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,((Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:4.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,(Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):0.0):1.0):1.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92732]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_19 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):2.0,Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:2.0):2.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:4.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92736]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_10 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,((((Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:4.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:4.0):2.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:1.0):1.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92727]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_12 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,(Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):0.0):2.0):1.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:2.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92729]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_2 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0):1.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:3.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92719]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_24 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,(((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:2.0):1.0,(Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:2.0,(Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:5.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92741]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_5 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):1.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):7.0,(((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0):1.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):1.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):18.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:34.0):6.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):44.0):17.0):17.0):2.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92722]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_18 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,(((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):1.0,(Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:2.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92735]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_4 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,(((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:1.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:3.0):1.0,Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0):1.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92721]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_16 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,((Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:2.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0):1.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:2.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):1.0):1.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92733]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_14 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:2.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0):2.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92731]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_11 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:2.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92728]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_3 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,(((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:1.0,Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:4.0):1.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92720]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_25 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,(((((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):2.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0):1.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):1.0):2.0,Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:2.0):2.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:4.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92742]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_7 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):1.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):10.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):4.0):7.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0):1.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):1.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):16.0,((Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):44.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:30.0):12.0):17.0):17.0):2.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92724]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_17 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,(((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:2.0):1.0,(Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:2.0,(Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:4.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:1.0,(Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):1.0):2.0):2.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92734]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_9 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,((Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:4.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):1.0):1.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92726]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_13 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:2.0,(Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:4.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:1.0,(Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):1.0):2.0):2.0):2.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:2.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92730]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_6 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:2.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):1.0):1.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92723]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_21 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:2.0):1.0,(((Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:5.0):2.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):0.0):2.0,Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0):1.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92738]


END;
BEGIN TREES;
      TITLE 'Charlesia_MP_ITS';
      LINK TAXA = TaxaForAnalysisStep17488;
      TREE Charlesia_MP_ITS_PAUP_1 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_ITS_AF033400:0.0,(Penicillium_charlesii_CV0646_Charlesia_ITS_JX091417:0.0,Penicillium_charlesii_CV0744_Charlesia_ITS_JX091418:0.0,Penicillium_charlesii_CV2006_Charlesia_ITS_JX091416:0.0,Penicillium_charlesii_CV1754_Charlesia_ITS_JX091414:0.0,Penicillium_charlesii_CV1819_Charlesia_ITS_JX091415:0.0,((Penicillium_fellutanum_CBS229.81T_Charlesia_ITS_AF033399:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_ITS_EF200082:0.0,Penicillium_fellutanum_NRRL35619_Charlesia_ITS_EF200079:0.0,Penicillium_fellutanum_CV1936_Charlesia_ITS_JX091419:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_ITS_KC411759:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_ITS_KC790402:0.0):2.0,(((Penicillium_coffeae_CBS119387T_Charlesia_ITS_AY742702:1.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_ITS_KC411711:8.0):11.0,(Penicillium_indicum_CBS115.63T_Charlesia_ITS_AY742699:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_ITS_EU427291:0.0):3.0):5.0,(((((Penicillium_boreae_CBS111717T_Stolkiae_ITS_AF481122:2.0,Penicillium_pullum_CBS331.48T_Stolkiae_ITS_AF033443:3.0):1.0,(Penicillium_canariense_CBS111720T_Stolkiae_ITS_AF481121:1.0,((Penicillium_stolkiae_CBS315.67T_Stolkiae_ITS_AF033444:6.0,Penicillium_subarcticum_CBS111719T_Stolkiae_ITS_AF481120:0.0):2.0,Penicillium_cf_canariense_KAS2475T_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2476_Stolkiae_ITS_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_ITS_na:0.0):2.0):1.0):0.0,Penicillium_donkii_CBS188.72T_Stolkiae_ITS_AF033445:3.0):20.0,(Penicillium_georgiense_CBS132826T_Charlesia_ITS_EF422852:0.0,Penicillium_georgiense_NRRL35507_Charlesia_ITS_EF422850:0.0,Penicillium_georgiense_NRRL35508_Charlesia_ITS_EF422851:0.0):42.0):11.0,Penicillium_cf_coffeae_KAS2597T_Charlesia_ITS_na:29.0):19.0):17.0):1.0):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92718]


END;