#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 09, 2026; 19:50 GMT TreeBASE (cc) 1994-2008 Study reference: Visagie C. 2016. Fifteen new species of Penicillium. Persoonia, 36: 247–280. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18638] [ The following blocks are input data for analysis step 17490 ] BEGIN TAXA; TITLE TaxaForAnalysisStep17490; DIMENSIONS NTAX=29; TAXLABELS Penicillium_boreae_CBS111717T_Stolkiae_BenA_JN617715 Penicillium_canariense_CBS111720T_Stolkiae_BenA_JN617714 Penicillium_cf_canariense_KAS2475T_Stolkiae_BenA_na Penicillium_cf_canariense_KAS2476_Stolkiae_BenA_na Penicillium_cf_canariense_KAS2477B_Stolkiae_BenA_na Penicillium_cf_coffeae_KAS2597T_Charlesia_BenA_na Penicillium_charlesii_CBS304.48T_Charlesia_BenA_JX091508 Penicillium_charlesii_CV0646_Charlesia_BenA_JX091503 Penicillium_charlesii_CV0744_Charlesia_BenA_JX091504 Penicillium_charlesii_CV1754_Charlesia_BenA_JX091505 Penicillium_charlesii_CV1819_Charlesia_BenA_JX091506 Penicillium_charlesii_CV2006_Charlesia_BenA_JX091507 Penicillium_coffeae_CBS119387T_Charlesia_BenA_KJ834443 Penicillium_donkii_CBS188.72T_Stolkiae_BenA_JN617718 Penicillium_fellutanum_CBS229.81T_Charlesia_BenA_KJ834450 Penicillium_fellutanum_CV1936_Charlesia_BenA_JX091509 Penicillium_fellutanum_NRRL35619_Charlesia_BenA_EF198545 Penicillium_fellutanum_NRRL35622_Charlesia_BenA_EF198548 Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_BenA_JX091513 Penicillium_georgiense_CBS132826T_Charlesia_BenA_EF506223 Penicillium_georgiense_NRRL35507_Charlesia_BenA_EF506222 Penicillium_georgiense_NRRL35508_Charlesia_BenA_EF506224 Penicillium_indicum_CBS115.63T_Charlesia_BenA_EU427263 Penicillium_indicum_gerundense_CBS179.81T_Charlesia_BenA_EU427264 Penicillium_multicolor_CBS501.73T_Charlesia_BenA_JN799645 Penicillium_phoeniceum_CBS249.32T_Charlesia_BenA_KJ834483 Penicillium_pullum_CBS331.48T_Stolkiae_BenA_JN617719 Penicillium_stolkiae_CBS315.67T_Stolkiae_BenA_JN617717 Penicillium_subarcticum_CBS111719T_Stolkiae_BenA_JN617716 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M34562] TITLE 'Charlesia_BenA'; LINK TAXA = TaxaForAnalysisStep17490; DIMENSIONS NCHAR=465; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Penicillium_boreae_CBS111717T_Stolkiae_BenA_JN617715 TGGTACGTGCC-----ACTTCC----------CGACCAAAAAAAAAACATCCCAGCACGAC-AACAACACCAATTGCTCTGA-GGGATG---------GACCGAATGTGC-TGACTCAACCGCAGGCAAACCATTGCTGGCGAGCACGGCCTTGACGGCGATGGCCAGTAAGT-CCTTCGGCTACCATACGA-GGCGGAATGGCGGTCTGATGT---TTTTGCTAGATACAATGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGATGTGTTCCTGCTCAATGACAA-----CGAGATGCACCTAACCGATGGATTGTTTGTTCTCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_canariense_CBS111720T_Stolkiae_BenA_JN617714 TGGTACGTGCC-----ACTTCC----------CGCC---AAAAAAAACATCCCAGCACGAC-AACAACACCAATTGCTCGAA-TGGATG---------GACCGGTTGTGC-TGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATACGA-GGCGGAATGGCGGTCTGATGT---TTTTGCTAGATACAACGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACGA-----CGAGATGCACCTAACCGATGGATTGTTTGTTTCCTAGGCTAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCTGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_cf_canariense_KAS2475T_Stolkiae_BenA_na TGGTACGTGCC-----ACTCCC----------CGCC-AAAAAAAAAACATCCCAGCACGACAAACAACACCAATTGCTCGGA-TGGATG---------GACCGAATGTGC-TGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATGCGA-GGCGGAGTGGCGGTCTGATGT---TTTTGCTAGATACCAGGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTTTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGATGCATCTAACCGATGGATTGTTTGTTTCCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_cf_canariense_KAS2476_Stolkiae_BenA_na TGGTACGTGCC-----ACTCCC----------CGCC--AAAAAAAAACATCCCAGCACGACAAACAACACCAATTGCTCGGA-TGGATG---------GACCGAATGTGC-TGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATGCGA-GGCGGAGTGGCGGTCTGATGT---TTTTGCTAGATACCAGGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGATGCATCTAACCGATGGATTGTTTGTTTCCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_cf_canariense_KAS2477B_Stolkiae_BenA_na TGGTACGTGCC-----ACTCCC----------CGCC-AAAAAAAAAACATCCCAGCACGACAAACAACACCAATTGCTCGGA-TGGATG---------GACCGAATGTGC-TGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATGCGA-GGCGGAGTGGCGGTCTGATGT---TTTTGCTAGATACCAGGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTTTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGATGCATCTAACCGATGGATTGTTTG-TTCCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_cf_coffeae_KAS2597T_Charlesia_BenA_na TGGTACGTGTT-----TACCCC----------CTCTT-------------------------CGGGCCTACAATTGCTGCC--CATTGGATTCGATGCACGACAGCACGC-TAACTCAATTACAGGCAGCAGATTGCCAGTGAGCACGGCCTTGACGGCGATGGCCAGTAAGT-GGTGTATAGGTGGAGTTGGAAGAGAATGGCGGTCTGATGT---TTTTCTTAGCTTCACTGGTTCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCATGTGAGTGTCAACCACAAACTGCAT--------TTTAGGGCTTCAATTCTAACAATAATGCTATTACTAGGCCAGCGGTGACCGCTACGTTCCCCGTTCCGTCCTGGTTGATCTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGCCCCGACAACTTCGTCT Penicillium_charlesii_CBS304.48T_Charlesia_BenA_JX091508 TGGTACGTCCC-----GTTCAC----------CCATCCC-----------------------GGAGTCATCAATTGATGCT--CGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACAAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT---GGAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_charlesii_CV0646_Charlesia_BenA_JX091503 TGGTACGTCCC-----GTTCAC----------CCATCCC-----------------------GGAGTCATCAATTGATGCT--CGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT---GGAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_charlesii_CV0744_Charlesia_BenA_JX091504 TGGTACGTCCC-----GTTCAC----------CCATCCC-----------------------GGAGTCATCAATTGATGCT--CGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT---GGAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_charlesii_CV1754_Charlesia_BenA_JX091505 TGGTACGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCAATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCTCGAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT--CGAAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_charlesii_CV1819_Charlesia_BenA_JX091506 TGGTACGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCAATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCTCGAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT--CGAAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_charlesii_CV2006_Charlesia_BenA_JX091507 TGGTACGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCAATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCTCGAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT--CGAAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_coffeae_CBS119387T_Charlesia_BenA_KJ834443 TGGTATGTGCC-----GTTCCA----------CCCCTCCA----------------------GCGATCATCAATTGCTACG--TTTCTG----------GGATTGAATGC-TAATCAATTTATAGGCAGCAGATTGCTTCCGAGCACGGTCTCGACGGCGATGGCCAGTGAGTGTTTGGTGACGATGGATTC-TTCGGAATGGCGGTCTGATAT---TTTTTTTAGCTTCACCGGTGCCTCCGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACCACGTAGGTTTTTACCGGCAAAGATAGAC------GAAAGTCTCTCTAA---------CGATGTGAAATTAGGCCAGCGGTGACCGCTACGTCCCCCGTTCCGTCCTTGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCTTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_donkii_CBS188.72T_Stolkiae_BenA_JN617718 TGGTACGTGCC-----ACTTCC----------CGCC--AAAAAAAAACAACCCGCCAC----AACAACACCAATTGCTGGTC-TGAACG---------AACCGAATGTGC-TGACTCAATCACAGGCAAACTATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTTCGCTACCATACGA-TGTGGAATGGCGGTCTGATATTTGTTTTGCTAGATACAATGGCACCTCCGACCTCCAGCTGGAGCGGATGAACGTCTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGCTGCACCTAACCGATGGATTTTTTGTTTTCTAGGCTAGCGGTGACAAGTACGTGCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_fellutanum_CBS229.81T_Charlesia_BenA_KJ834450 ------------------------------------------------------------------------ATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTAAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_fellutanum_CV1936_Charlesia_BenA_JX091509 TGGTATGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCCATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTAAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_fellutanum_NRRL35619_Charlesia_BenA_EF198545 TGGTATGTCCC-----GTTCAC----------ACTCCCC-----------------------GGAGTCATCCATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTCAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_fellutanum_NRRL35622_Charlesia_BenA_EF198548 TGGTATGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCCATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTAAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_BenA_JX091513 TGGTATGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCCATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTAAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_georgiense_CBS132826T_Charlesia_BenA_EF506223 TGGTACGTGTT-----GACTCCGAAAGCTCTACCTTAACAAAGACACATGA-----------AGACCAGCCAATTGGTAAT--TTGCTG---------GAGATGACATGC-TGACTGATCTACAGGCAAAACATTGCTGCTGAGCACGGCCTTGATGGTGATGGCCAGTGAGT-TTGACAAACCATGTTGGA-GATGGAATGGCGGTCTGATGTC--TGTTACTAGGTACAACGGTGCCTCCGACCTTCAGCTGGAGCGCATGAATGTTTATTTCAATCACGTAAGTGGCACTGGTTATATATGGAAAG----TGAAACTTGTCTCATC-------AAAGTTGTCTGTAGGCCAGCGGTGACCGCTACGTTCCCCGTGCTGTGCTAGTCGACTTGGAGCCCGGTACCATGGACGCCATCCGTGCCGGTCCCTTTGGCAAGCTCTTCCGCCCCGACAACTTCGTCT Penicillium_georgiense_NRRL35507_Charlesia_BenA_EF506222 TGGTACGTGTT-----GACTCCGAAAGCTCTACCTTAACAAAGACACATGA-----------AGACCAGCCAATTGGTAAT--TTGCTG---------GAGATGACATGC-TGACTGATCTACAGGCAAAACATTGCTGCTGAGCACGGCCTTGATGGTGATGGCCAGTGAGT-TTGACAAACCATGTTGGA-GATGGAATGGCGGTCTGATGTC--TGTTACTAGGTACAACGGTGCCTCCGACCTTCAGCTGGAGCGCATGAATGTTTATTTCAATCACGTAAGTGGCACTGGTTATATATGGAAAG----TGAAACTTGTCTCATC-------AAAGTTGTCTGTAGGCCAGCGGTGACCGCTACGTTCCCCGTGCTGTGCTAGTCGACTTGGAGCCCGGTACCATGGACGCCATCCGTGCCGGTCCCTTTGGCAAGCTCTTCCGCCCCGACAACTTCGTCT Penicillium_georgiense_NRRL35508_Charlesia_BenA_EF506224 TGGTACGTGTT-----GACCCCGAAAGCTCTACCCCAACAAAGACACATGA-----------GAACCAGCCAATTAGTGAT--ATACTG---------GAGATGACATGC-TGACTGATGTACAGGCAAAACATTGCTGCTGAGCACGGCCTTGATGGTGACGGCCAGTGAGT-TTGACGAACCATGTTGGA-GATGGAATGGCGGTCTGATGTC--TTTTACTAGATACAATGGTGCCTCCGACCTTCAGCTGGAGCGCATGAATGTTTACTTCAATCATGTAAGTGACACTGGCAATATTTGGAAAG----TGAAATTTGTCTAATC-------AAGGTTATCTGTAGGCCAGCGGTGACCGCTACGTTCCCCGTGCTGTGCTAGTCGACCTGGAGCCCGGTACCATGGACGCCATCCGTGCCGGCCCCTTTGGCAAGCTCTTCCGCCCCGACAACTTCGTCT Penicillium_indicum_CBS115.63T_Charlesia_BenA_EU427263 TGGTACGTGCCCATCTGATCCC----------CCCCCGC-----------------------GAGGATGTCAATTGATGCT--TCCCAA---------CGAACACAATGC-TAATTAAAATACAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGCGATGGCCAGTAAGT-TTCGAT--TGATGAACTCCTCACGAATGGCGTTCTGACTT---TTTCCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTGATGATGGTATGTGTGGATCTGTAATTCAATATTCTAACCT------TTGTTTTGCTTTTAGGCCAGCGGTGACCGCTACGTTCCTCGTTCCGTCCTGGTTGATTTGGAGCCTGGTACCATGGACGCTGTTCGTGCCGGTCCTTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_indicum_gerundense_CBS179.81T_Charlesia_BenA_EU427264 TGGTACGTGCCCATCTGATCCC----------CCCCCGC-----------------------GAGGATGTCAATTGATGCT--TCCCAA---------CGAACACAATGC-TAATTAAAATACAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGCGATGGCCAGTAAGT-TTCGAT--TGATGAACTCCTCACGAATGGCGTTCTGACTT---TTTCCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTGATGATGGTATGTGTGGATCTGTAATTCAATATTCTAACCT------TTGTTTTGCTTTTAGGCCAGCGGTGACCGCTACGTTCCTCGTTCCGTCCTGGTTGATTTGGAGCCTGGTACCATGGACGCTGTTCGTGCCGGTCCTTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_multicolor_CBS501.73T_Charlesia_BenA_JN799645 TGGTATGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCCATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTAAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_phoeniceum_CBS249.32T_Charlesia_BenA_KJ834483 TGGTATGTGCC-----GGTTCA----------CCCCTCA-----------------------GCGATCTTCAATTGCTACT--TTTCAG----------GGATTCAATGC-TAATCGAGTTATAGGCAGCAGATTGCTTCCGAGCACGGTCTCGACGGCGATGGCCAGTGAGT-TCTGGTTATGATGGATTC-TTCAGAATGGCGGTCTGATAT---TTTTTTTAGCTTCACCGGTGCCTCCGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACCACGTAGGTTTTTACCAACCGGGATAGAC------AAGACTATCTCTAA---------TGATGTGAATCTAGGCCAGCGGTGACCGCTACGTCCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_pullum_CBS331.48T_Stolkiae_BenA_JN617719 TGGTACGTGCC-----ACTTCC----------CGTC-AAAAAAAAAACATCCCAGCACGAC-AACAACACCAATTGCTCGGA-TGAATG---------GGCCAATTGTGC-TGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATACGA-GGCGGAATGGCGGTCTGATGT---TTTTGCTAGATACAATGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGCTGTGTTCCTGCTCAATGACAA-----CGAGATGCACCTAACCGATGGATTGTTTGTTTTCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_stolkiae_CBS315.67T_Stolkiae_BenA_JN617717 -----------------------------------------------CATCCCTGCACGAC-AACAACACCAATTGCTTGGATTGGATT---------GGACGAATGTGCTTGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATACGA-GGCGGAATGGCGGTCTGATGT---TTTTGCTAGATACAATGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGATGCACCTAACCGATGGATTGTTTGTTTCCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTTTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_subarcticum_CBS111719T_Stolkiae_BenA_JN617716 TGGTACGTGCC-----ACTTCC----------CGCC--AAAAAAAAACATCCCAGGACGAC-AACAACACCAATTGCTTGGA-TGGATG---------GAACGAATGTGC-TGACTCAACTACAGGCAGACCATTGCTGGTGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATACGA-GGCGGAATGGCGGTCTGATG----TTTTGCTAGATACAATGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGATGCACCTAACCGATGGATTGTTTGTTTCCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT ; END; [ The following blocks are output data for analysis step 17490 ] BEGIN TREES; TITLE 'Charlesia_MP_BenA'; LINK TAXA = TaxaForAnalysisStep17490; TREE Charlesia_MP_BenA_PAUP_1 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_BenA_JX091508:0.0,(Penicillium_charlesii_CV0646_Charlesia_BenA_JX091503:0.0,Penicillium_charlesii_CV0744_Charlesia_BenA_JX091504:0.0,((Penicillium_charlesii_CV2006_Charlesia_BenA_JX091507:0.0,Penicillium_charlesii_CV1754_Charlesia_BenA_JX091505:0.0,Penicillium_charlesii_CV1819_Charlesia_BenA_JX091506:0.0):1.0,(((Penicillium_fellutanum_CBS229.81T_Charlesia_BenA_KJ834450:0.0,Penicillium_fellutanum_CV1936_Charlesia_BenA_JX091509:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_BenA_JN799645:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_BenA_JX091513:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_BenA_EF198548:0.0):1.0,Penicillium_fellutanum_NRRL35619_Charlesia_BenA_EF198545:1.0):10.0,(((Penicillium_indicum_CBS115.63T_Charlesia_BenA_EU427263:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_BenA_EU427264:0.0):29.0,(Penicillium_cf_coffeae_KAS2597T_Charlesia_BenA_na:41.0,((((Penicillium_boreae_CBS111717T_Stolkiae_BenA_JN617715:8.0,((Penicillium_canariense_CBS111720T_Stolkiae_BenA_JN617714:6.0,((Penicillium_cf_canariense_KAS2475T_Stolkiae_BenA_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_BenA_na:0.0):1.0,Penicillium_cf_canariense_KAS2476_Stolkiae_BenA_na:0.0):6.0):1.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_BenA_JN617716:4.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_BenA_JN617717:5.0):2.0):1.0):1.0,Penicillium_pullum_CBS331.48T_Stolkiae_BenA_JN617719:5.0):8.0,Penicillium_donkii_CBS188.72T_Stolkiae_BenA_JN617718:14.0):60.0,((Penicillium_georgiense_CBS132826T_Charlesia_BenA_EF506223:0.0,Penicillium_georgiense_NRRL35507_Charlesia_BenA_EF506222:0.0):15.0,Penicillium_georgiense_NRRL35508_Charlesia_BenA_EF506224:12.0):39.0):44.0):40.0):20.0,(Penicillium_coffeae_CBS119387T_Charlesia_BenA_KJ834443:14.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_BenA_KJ834483:13.0):27.0):38.0):5.0):4.0):1.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92511] END; BEGIN TREES; TITLE 'Charlesia_MP_BenA'; LINK TAXA = TaxaForAnalysisStep17490; TREE Charlesia_MP_BenA_PAUP_2 = [&R] (Penicillium_charlesii_CBS304.48T_Charlesia_BenA_JX091508:0.0,(Penicillium_charlesii_CV0646_Charlesia_BenA_JX091503:0.0,Penicillium_charlesii_CV0744_Charlesia_BenA_JX091504:0.0,((Penicillium_charlesii_CV2006_Charlesia_BenA_JX091507:0.0,Penicillium_charlesii_CV1754_Charlesia_BenA_JX091505:0.0,Penicillium_charlesii_CV1819_Charlesia_BenA_JX091506:0.0):1.0,(((Penicillium_fellutanum_CBS229.81T_Charlesia_BenA_KJ834450:0.0,Penicillium_fellutanum_CV1936_Charlesia_BenA_JX091509:0.0,Penicillium_multicolor_CBS501.73T_Charlesia_BenA_JN799645:0.0,Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_BenA_JX091513:0.0,Penicillium_fellutanum_NRRL35622_Charlesia_BenA_EF198548:0.0):1.0,Penicillium_fellutanum_NRRL35619_Charlesia_BenA_EF198545:1.0):10.0,(((Penicillium_indicum_CBS115.63T_Charlesia_BenA_EU427263:0.0,Penicillium_indicum_gerundense_CBS179.81T_Charlesia_BenA_EU427264:0.0):29.0,(Penicillium_cf_coffeae_KAS2597T_Charlesia_BenA_na:41.0,((((Penicillium_boreae_CBS111717T_Stolkiae_BenA_JN617715:8.0,(Penicillium_canariense_CBS111720T_Stolkiae_BenA_JN617714:7.0,(Penicillium_subarcticum_CBS111719T_Stolkiae_BenA_JN617716:4.0,Penicillium_stolkiae_CBS315.67T_Stolkiae_BenA_JN617717:5.0):2.0,((Penicillium_cf_canariense_KAS2475T_Stolkiae_BenA_na:0.0,Penicillium_cf_canariense_KAS2477B_Stolkiae_BenA_na:0.0):1.0,Penicillium_cf_canariense_KAS2476_Stolkiae_BenA_na:0.0):6.0):1.0):1.0,Penicillium_pullum_CBS331.48T_Stolkiae_BenA_JN617719:5.0):8.0,Penicillium_donkii_CBS188.72T_Stolkiae_BenA_JN617718:14.0):60.0,((Penicillium_georgiense_CBS132826T_Charlesia_BenA_EF506223:0.0,Penicillium_georgiense_NRRL35507_Charlesia_BenA_EF506222:0.0):15.0,Penicillium_georgiense_NRRL35508_Charlesia_BenA_EF506224:12.0):39.0):44.0):40.0):20.0,(Penicillium_coffeae_CBS119387T_Charlesia_BenA_KJ834443:14.0,Penicillium_phoeniceum_CBS249.32T_Charlesia_BenA_KJ834483:13.0):27.0):38.0):5.0):4.0):1.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr92512] END;