#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 15, 2026; 11:09 GMT TreeBASE (cc) 1994-2008 Study reference: Pennington R., Lavin M., Prado D., A pendry C., Pell S., & Butterworth C. 2003. Neotropical seasonally dry forest plants show patterns of both Tertiary and Quaternary diversification. Philosophical Transactions of the Royal Society B, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1036] [ The following blocks are input data for analysis step 1809 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1809; DIMENSIONS NTAX=38; TAXLABELS Ruprechtia_albida_1_.4 Ruprechtia_albida_2_.4 Ruprechtia_aperta_1_.4 Ruprechtia_aperta_2_.4 Ruprechtia_aperta_3_.5 Ruprechtia_apetala_1_.3._chaco Ruprechtia_apetala_2_.3._chaco Ruprechtia_apetala_3_.3._chaco Ruprechtia_apurensis Ruprechtia_brachysepala Ruprechtia_carina Ruprechtia_chiapensis Ruprechtia_costaricensis Ruprechtia_cruegerii_1_wetamaz Ruprechtia_cruegerii_2_wetamaz Ruprechtia_curranii Ruprechtia_fagifolia Ruprechtia_fusca_1_.8 Ruprechtia_fusca_2_.8 Ruprechtia_fusca_3_.8 Ruprechtia_fusca_4_.8 Ruprechtia_laevigata_1_.8 Ruprechtia_laevigata_2_.8 Ruprechtia_laevigata_3_.8 Ruprechtia_laevigata_4_.8 Ruprechtia_laxiflora_.1._.2._.3 Ruprechtia_pallida_.8 Ruprechtia_ramiflora_1_.7._wetamaz_wetmeso Ruprechtia_ramiflora_2_.7._wetamaz_wetmeso Ruprechtia_ramiflora_3_.7._wetamaz_wetmeso Ruprechtia_ramiflora_4_.7._wetamaz_wetmeso Ruprechtia_ramiflora_5_.7._wetamaz_wetmeso Ruprechtia_ramiflora_6_.7._wetamaz_wetmeso Ruprechtia_tangarana_wetamaz Ruprechtia_tenuiflora_1_wetamaz Ruprechtia_tenuiflora_2_wetamaz Ruprechtia_triflora_1_chaco Ruprechtia_triflora_2_chaco ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M637] TITLE Ruprechtia; LINK TAXA = TaxaForAnalysisStep1809; DIMENSIONS NCHAR=649; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ruprechtia_albida_1_.4 TTTATCACCCTCAGGGAGGCAGGGATAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCTGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTGTCGCGTCCCGCCTCCCCCGGGCGACCGGGGAGCCGGCGATGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTTGCCCCCTCCTCCTCCATCTAGGACTTGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCT-GTGGCCGTGAATGCCGCGACGATTGGTGGTTTGACGCACGACACCACGAGCTTCGGTTTATGGCATCGTGAAGCATCGCGTCGCTTGCCCTAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCTGGGATCTCGTGATCCA-CCCTAACCCTTGCGACCCCA Ruprechtia_albida_2_.4 TTTATCACCCTCAGGGAGGCAGGGATAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCACCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCTGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTGTCGCGTCCCGCCTCCCCCGGGCGACCGGGGAGCCGGCGATGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTTGCCCCCTCCTCCTCCATCTAGGACTTGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCT-GTGGCCGTGAATGCCGCGACGATTGGTGGTTTGACGCACGACACCACGAGCTTCGGTTTATGGCATCGTGAAGCATCGCGTCGCTTGCCCTAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCTGGGATCCCGTGATCCA-CCCTAACCCTTGCGACCCCA Ruprechtia_aperta_1_.4 TTTATCACCCTCAGGGAGGCAGGGATAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCTGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTGTCGCGTCCCGCCTCCCCCGGGCGACCGGGGAGCCGGCGATGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTTGCCCCCTCCTCCTCCATCTAGGACTTGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCT-GTGGCCGTGAATGCCGCGACGATTGGTGGTTTGACGCACGACACCACGAGCTTCGGTTTATGGCATCGTGAAGCATCGCGTCGCTTGCCCTAGCGGACCACGTAAAGCTCGAAGGACCCTTAGGAAGGAGAGGGGCATCCCATCTGGGATGCTC???????????????????????????? Ruprechtia_aperta_2_.4 TTTATCACCCTCAGGGAGGCAGGGATAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCTGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTGTCGCGTCCCGCCTCCCCCGGGCGACCGGGGAGCCGGCGATGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTTGCCCCCTCCTCCTCCATCTAGGACTTGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCT-GTGGCCGTGAATGCCGCGACGATTGGTGGTTTGACGCACGACACCACGAGCTTCGGTTTATGGCATCGTGAAGCATCGCGTCGCTTGCCCTAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCTGGGATCCCGTGATCCA-CCCTAACCCTTGCGACCCCA Ruprechtia_aperta_3_.5 TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCTGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCGCCCCGCCTCCCCCGGGCGACCGGGGAGCCGGCGATGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTTGCCCCCTCCTCCTTCCTCTAGGACTTGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCCGCGACGATTGGTGGTTTGACGCACGACTCCACGAGCTTCGGTTCATGGCATCGTGAAGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTAGGGAAGGAGAGGGGCATCCCATCTGGGATCCCGTGATCCA-CCCTAACCCTTGCGACCCCA Ruprechtia_apetala_1_.3._chaco TTTATCAACCTCAGGGAGGCAGGGCTAGTCTCTGTCCCTTGAAACCGACGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCTGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCGCCCCGCCTCCCTCGGGCGACCGGGGATCCGGCGATGGCGTGTTGATATATAGCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTTGCCCCCTCCTCCTCCATCCAGGACTGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCCGCGACGATTGGTGGTTTGACGCACGACTCCACGAGCTTCGGTTCATGGCATCGTGAAGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTTAGGAAGGAGAGGGGCATCCCATCTGGGATCCCAGGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_apetala_2_.3._chaco TTTATCAACCTCAGGGAGGCAGGGCTAGTCTCTGTCCCTTGAAACCGACGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAACGTGTCGGCTGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCGCCCCGCCTCCCTCGGGCGACCGGGGATCCGGCGATGGCGTGTTGATATATAGCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTTGCCCCCTCCTCCTCCATCCAGGACTGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCCGCGACGATTGGTGGTTTGACGCACGACTCCACGAGCTTCGGTTCATGGCATCGTGAAGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTTAGGAAGGAGAGGGGCATCCCATCTGGGATCCCAGGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_apetala_3_.3._chaco TTTATCAACCTCAGGGAGGCAGGGCTAGTCTCTGTCCCTTGAAACCGACGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCTGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCGCCCCGCCTCCCTCGGGCGACCGGGGATCCGGCGATGGCGTGTTGATATATAGCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTTGCCCCCTCCTCCTCCATCCAGGACTGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCCGCGACGATTGGTGGTTTGACGCACGACTCCACGAGCTTCGGTTCATGGCATCGTGAAGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTTAGGAAGGAGAGGGGCATCCCATCTGGGATCCCAGGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_apurensis TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTTGGGGGCCGATGGGTGGGGGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAGAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCTGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAACGGACCACGTAAAGCTCGAAGGACCCTAAGGAGGAAGAGCGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_brachysepala ?????????????????????GGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAACAACTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGACTCCACGAGCTTCGGCTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAACGGACCACGGAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATC??????????????????????? Ruprechtia_carina TTTAGCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGGGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCATGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_chiapensis TTTATCACCCTCAGGGAGGCAGGGCTACCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCATGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCTGCGACGATTGGTGGTTTGACACACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGAC???? Ruprechtia_costaricensis ????????CCTCAGGGAGGCAGGGCTAGCCTCTGTCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCAGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTACGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACAAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATC??????????????????????? Ruprechtia_cruegerii_1_wetamaz TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGTGGATGCTGCGACGATTGGTGGTTTGACGCACGACTCCACGAGCTTCGGTTTGTGGCATCTTGAGGCATCGCGTCGCTTGCC-AAACGGAC-ACGGAAGGCTCGAA-GACC--TAGGAAGGAGA-GGGCATCC-ATCG????????????????????????????????????? Ruprechtia_cruegerii_2_wetamaz TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCATCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGTGGATGCTGCGACGATTGGTGGTTTGACGCACGACTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAACGGACCACGGAAGGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_curranii TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTTGGGGGCCGATGGGTGGGGGCGTGTCGGCCGTACCCCAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACTGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_fagifolia TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCGTCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCTGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCGTCCCGCCTCCCTCGGGCATCCGGGGAGCCGGCGATGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACGGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCCGCGACGATTGGTGGTTGGACGCACGATTCCACGAGCGTCGGTTCGTGGCTTCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCGTCCCATCCGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_fusca_1_.8 TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCTATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCTGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCTGCGAATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCA------------TCCCATGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_fusca_2_.8 TT-ATCA-CCTCAGGGAGGCAGG-CTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCTATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCTGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCTGCGAATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCAT----GATCC--------A--CCTAACCGTTGCGAC???? Ruprechtia_fusca_3_.8 ????????????AGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCTATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCTGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCTGCGAATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCA------------TGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_fusca_4_.8 TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCATGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_laevigata_1_.8 TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCCCGTGGCCGCGAATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_laevigata_2_.8 TTTATCACCCTCAGGGAG{GT}CAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCAT???????????????????????????????????????????? Ruprechtia_laevigata_3_.8 TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCC{AC}-TCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACC??? Ruprechtia_laevigata_4_.8 TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGAATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_laxiflora_.1._.2._.3 TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCTGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCGTCCCGCCTCCCTCGGGCGACCGGGGAGTCGGCGATGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACCGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCC-TGCGCGCGGTCGGCCTAAATACG-AGCCC-GTGGCCGCCAATGCCGCGAC-ATTGGTGGTTTGACGCACGA-TCCAC-AGCTTCG-TTCTTGGCATCCTGAGGCATCGCGTCGCTTG??????????????????????????????????????????????????????????????????????????????????????????????? Ruprechtia_pallida_.8 ??????????????GGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCTATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCA------------TGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_ramiflora_1_.7._wetamaz_wetmeso TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTTGGGGGCCGATGGGTGGGGGCGTGTCGGCCGTACCCCAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACTGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_ramiflora_2_.7._wetamaz_wetmeso TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTTGGGGGCCGATGGGTGGGGGCGTGTCGGCCGTACCCCAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACTGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGA-CCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_ramiflora_3_.7._wetamaz_wetmeso TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTTGGGGGCCGATGGGTGGGGGCGTGTCGGCCGTACCCCAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACTGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGA-CCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_ramiflora_4_.7._wetamaz_wetmeso TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTTGGGGGCCGATGGGTGGGGGCGTGTCGGCCGTACCCCAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACTGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_ramiflora_5_.7._wetamaz_wetmeso ?????????CTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTTGGGGGCCGATGGGTGGGGGCGTGTCGGCCGTACCCCAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACTGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACG-ACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_ramiflora_6_.7._wetamaz_wetmeso ????????????????????????????????????????????????????????????????????????????????????????????GCGTGTCGGCCGTACCCCAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACTGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCGAGCGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTTACCGTTGCGACCCCA Ruprechtia_tangarana_wetamaz ??????????????????????GGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGAGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAACAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTTTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGACTCCACGAGCTTCGGCTTATGGCATCGTGAGGCATCGCGTCGCTTGCCCAAACGGACCACGGAAAGCTCGAAGGACCCTAAGGAAGGAGAGGGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_tenuiflora_1_wetamaz TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTTGGGGGCCGATGGGTGGGGGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAGAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCTGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAACGGACCACGTAAAGCTCGAAGGACCCTAAGGAGGAAGAGCGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_tenuiflora_2_wetamaz TTTATCACCCTCAGGGAGGCAGGGCTAGCCTCTGCCCCTTGAAACCGGCGTGTTCCTTCCCCATCTCCCCCGTCGGGGGCCGATGGGTGGGGGCGTGTCGGCCGTACCCTAACACCGGCGCGGGTTGCGCCAAGGACCAATAATTCTATCGCTTCCCGCCTCCCTTGGGCGACCGGGGAGTCGGCGACGGCGTGTCGATATACAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTCGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCTCCTCCATCTAGGACAGGGAGAGGGGCGGATTCTGGCCCCCCGTGTGCCCTGCGCGCGGTCGGCCTAAATACGGAGCCC-GTGGCCGCGGATGCTGCGACGATTGGTGGTTTGACGCACGATTCCACGAGCTTCGGTTTGTGGCATCGTGAGGCATCGCGTCGCTTGCCCAAACGGACCACGTAAAGCTCGAAGGACCCTAAGGAAGAAGAGCGGCATCCCATCGGGGATCCCGTGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_triflora_1_chaco TTTATCAACCTCGGGGAGGCAGGGCTCGTCCCTGTCCCTCGAAACCGGCGTGTTCCTTCCCCATCTCCCTTGCAAGGGGGCGATGGGTGGGAGCACGTCGGC-GTACCCCAACACCGGCGCGGGTTGCGCCAAGGACCAACAATTCTATCGCGTCCCGCCTCCCTCGGGCGACCGGGGGGTCGGCGATGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCCCCCTCCCACCCCATCTGGGACTGG-AGAGGGGCGGATTCTGGCCCCCCGTGTGCCCCGCGCGCGGTCGGCCTAAATACGGAGCCTGGCGGCCGCAAATGCCGCGACGATTGGTGGTT--------------------------------------GAAGCATCGCGTCGCGTGCTCGAGCGGACTACCCAGAGCTCGGAGGACCCTAAGGAAGGAGAGGGGCGTG----------TCCCGGGATCCA-CCCTAACCGTTGCGACCCCA Ruprechtia_triflora_2_chaco TTTATAAACCTCGGGGAGGCAGGGCTCGTCCCTGTCCCTCGAAACCGGCGTGTTCCTTCCCCATCTCCCTTGCAAGGGGGCGATGGGTGGGAGCACGTCGGC-GTACCCCAACACCGGCGCGGGTTGCGCCAAGGACCAACAATTCTATCGCGTCCCGCCTCCCTCGGGCGACCGGGGGGTCGGCGATGGCGTGTCGATATATAACAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTTGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCG{CT}GTCGCCCCCTCCCACCCCATCTGGGACTGG-AGAGGGGCGGATTCTGGCCCCCCGTGTGCCCCGCGCGCGGTCGGCCTAAATACGGAGCCT-GCGGCCGCAAATGCCGCGACGATTGGTGGTT--------------------------------------GAAGCATCGCGTCGCGTGCTCGAGCGGACTACCCAGAGCTCGGAGGACCCTAAGGAAGGAGAGGGGCGTG----------TCCCGGGATCCA-CCCTAACCGTTGCGACCCCA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Ruprechtia) = N: 1-649; CODONPOSSET CodonPositions (CHARACTERS = Ruprechtia) = N: 1-649; END; [ The following blocks are output data for analysis step 1809 ] BEGIN TREES; TITLE Tb6584; LINK TAXA = TaxaForAnalysisStep1809; TREE Fig._8 = [&R] (((((((Ruprechtia_cruegerii_1_wetamaz,Ruprechtia_cruegerii_2_wetamaz),(Ruprechtia_brachysepala,Ruprechtia_tangarana_wetamaz)),(Ruprechtia_ramiflora_1_.7._wetamaz_wetmeso,Ruprechtia_curranii,Ruprechtia_ramiflora_5_.7._wetamaz_wetmeso,Ruprechtia_ramiflora_2_.7._wetamaz_wetmeso,Ruprechtia_ramiflora_4_.7._wetamaz_wetmeso,Ruprechtia_ramiflora_6_.7._wetamaz_wetmeso,Ruprechtia_ramiflora_3_.7._wetamaz_wetmeso),((Ruprechtia_tenuiflora_1_wetamaz,Ruprechtia_apurensis),Ruprechtia_tenuiflora_2_wetamaz),Ruprechtia_carina,Ruprechtia_pallida_.8,Ruprechtia_fusca_4_.8,Ruprechtia_laevigata_4_.8,Ruprechtia_laevigata_3_.8,Ruprechtia_chiapensis,Ruprechtia_laevigata_1_.8,Ruprechtia_laevigata_2_.8,Ruprechtia_costaricensis,(Ruprechtia_fusca_1_.8,Ruprechtia_fusca_3_.8,Ruprechtia_fusca_2_.8)),Ruprechtia_laxiflora_.1._.2._.3,Ruprechtia_fagifolia),((Ruprechtia_aperta_1_.4,Ruprechtia_aperta_2_.4,Ruprechtia_albida_2_.4,Ruprechtia_albida_1_.4),Ruprechtia_aperta_3_.5)),(Ruprechtia_apetala_1_.3._chaco,Ruprechtia_apetala_2_.3._chaco,Ruprechtia_apetala_3_.3._chaco)),(Ruprechtia_triflora_1_chaco,Ruprechtia_triflora_2_chaco)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1252] END;