#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 13, 2026; 14:13 GMT

TreeBASE (cc) 1994-2008

Study reference:
De maayer P., & Cowan D.A. 2016. Comparative genomic analysis of the flagellin glycosylation
island of the Gram-positive thermophile Geobacillus. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S20124]

[ The following blocks are input data for analysis step 19494 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep19494;
        DIMENSIONS NTAX=18;
        TAXLABELS
            Geobacillus_kaustophilus_DSM_7263T
            Geobacillus_kaustophilus_HTA426
            Geobacillus_sp._10
            'Geobacillus sp. C56-T2'
            Geobacillus_sp._CAMR12739
            'Geobacillus sp. Et7/4'
            Geobacillus_sp._GHH01
            Geobacillus_sp._MAS1
            Geobacillus_sp._PSS1
            Geobacillus_sp._PSS2
            Geobacillus_sp._WSUCF1
            Geobacillus_sp._Y412MC52
            Geobacillus_sp._Y412MC61
            'Geobacillus thermocatenulatus GS-1'
            'Geobacillus thermoglucosidans C56-YS93'
            Geobacillus_thermoglucosidans_DSM_2542T
            Geobacillus_thermoglucosidans_TNO09.20
            Geobacillus_thermoglucosidans_Y4.1MC1
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M38846]

	TITLE 'Geobacillus Figure 4: Distance matrix for UPGMA';
	LINK TAXA = TaxaForAnalysisStep19494;
	DIMENSIONS NCHAR=18;
	FORMAT DATATYPE=Continuous MISSING=? GAP= -;

MATRIX
[                                                   10        20        30        40        50        60        70        80        90        100       110 ]
[                                                    .         .         .         .         .         .         .         .         .         .         . ]
Geobacillus_kaustophilus_DSM_7263T          1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 0.0426 0.0 0.0421 1.0 1.0 
Geobacillus_kaustophilus_HTA426             1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 0.0 0.0426 0.0452 1.0 1.0 
Geobacillus_sp._10                          0.8502 0.8323 0.7857 0.7241 0.6871 0.0082 0.0082 0.0 0.0801 0.1458 0.4003 0.4003 0.4736 1.0 1.0 1.0 1.0 1.0 
'Geobacillus sp. C56-T2'                    0.5734 0.5479 0.4964 0.0 0.0602 0.7321 0.7321 0.7241 0.7599 0.6887 0.8507 0.8507 0.8471 1.0 1.0 0.9769 1.0 1.0 
Geobacillus_sp._CAMR12739                   0.8799 0.8613 0.8155 0.7599 0.7218 0.0725 0.0725 0.0801 0.0 0.2062 0.4071 0.3417 0.5086 1.0 1.0 1.0 1.0 1.0 
'Geobacillus sp. Et7/4'                     0.7845 0.7667 0.7551 0.8471 0.8173 0.4805 0.4805 0.4736 0.5086 0.4707 0.4736 0.4736 0.0 1.0 1.0 1.0 1.0 1.0 
Geobacillus_sp._GHH01                       0.8502 0.8323 0.8212 0.8507 0.8835 0.3747 0.3747 0.4003 0.4071 0.5276 0.0 0.0667 0.4736 1.0 1.0 1.0 1.0 1.0 
Geobacillus_sp._MAS1                        0.8502 0.8323 0.8212 0.8507 0.8835 0.3747 0.3747 0.4003 0.3417 0.5276 0.0667 0.0 0.4736 1.0 1.0 1.0 1.0 1.0 
Geobacillus_sp._PSS1                        1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 0.0 0.3453 
Geobacillus_sp._PSS2                        0.5323 0.5069 0.4538 0.0602 0.0 0.6947 0.6947 0.6871 0.7218 0.6517 0.8835 0.8835 0.8173 1.0 1.0 0.9522 1.0 1.0 
Geobacillus_sp._WSUCF1                      1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 0.3453 0.0 
Geobacillus_sp._Y412MC52                    0.8572 0.839 0.7925 0.7321 0.6947 0.0 0.0 0.0082 0.0725 0.1363 0.3747 0.3747 0.4805 1.0 1.0 1.0 1.0 1.0 
Geobacillus_sp._Y412MC61                    0.8572 0.839 0.7925 0.7321 0.6947 0.0 0.0 0.0082 0.0725 0.1363 0.3747 0.3747 0.4805 1.0 1.0 1.0 1.0 1.0 
'Geobacillus thermocatenulatus GS-1'        0.8229 0.805 0.7567 0.6887 0.6517 0.1363 0.1363 0.1458 0.2062 0.0 0.5276 0.5276 0.4707 1.0 1.0 1.0 1.0 1.0 
'Geobacillus thermoglucosidans C56-YS93'    0.9255 0.9111 0.825 0.9769 0.9522 1.0 1.0 1.0 1.0 1.0 1.0 1.0 1.0 0.0452 0.0421 0.0 1.0 1.0 
Geobacillus_thermoglucosidans_DSM_2542T     0.3695 0.3421 0.0 0.4964 0.4538 0.7925 0.7925 0.7857 0.8155 0.7567 0.8212 0.8212 0.7551 1.0 1.0 0.825 1.0 1.0 
Geobacillus_thermoglucosidans_TNO09.20      0.0 0.0348 0.3695 0.5734 0.5323 0.8572 0.8572 0.8502 0.8799 0.8229 0.8502 0.8502 0.7845 1.0 1.0 0.9255 1.0 1.0 
Geobacillus_thermoglucosidans_Y4.1MC1       0.0348 0.0 0.3421 0.5479 0.5069 0.839 0.839 0.8323 0.8613 0.805 0.8323 0.8323 0.7667 1.0 1.0 0.9111 1.0 1.0 
;
END;

[ The following blocks are output data for analysis step 19494 ]
BEGIN TREES;
      TITLE Geobacillus_FGIUPGMATB;
      LINK TAXA = TaxaForAnalysisStep19494;
      TREE tree1 = [&R] ((((Geobacillus_kaustophilus_HTA426:0.0213,Geobacillus_kaustophilus_DSM_7263T:0.0213):0.19695,'Geobacillus thermoglucosidans C56-YS93':0.21825):0.2765,((((Geobacillus_thermoglucosidans_TNO09.20:0.0174,Geobacillus_thermoglucosidans_Y4.1MC1:0.0174):0.1605,Geobacillus_thermoglucosidans_DSM_2542T:0.1779):0.08133,('Geobacillus sp. C56-T2':0.0301,Geobacillus_sp._PSS2:0.0301):0.22913):0.13978,((((((Geobacillus_sp._Y412MC52:0.0,Geobacillus_sp._Y412MC61:0.0):0.0041,Geobacillus_sp._10:0.0041):0.03342,Geobacillus_sp._CAMR12739:0.03752):0.04056,'Geobacillus thermocatenulatus GS-1':0.07808):0.12709,(Geobacillus_sp._GHH01:0.03335,Geobacillus_sp._MAS1:0.03335):0.17182):0.03491,'Geobacillus sp. Et7/4':0.24008):0.15893):0.09575):0.00525,(Geobacillus_sp._PSS1:0.17265,Geobacillus_sp._WSUCF1:0.17265):0.32735);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr99584]


END;