#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 17, 2026; 10:52 GMT TreeBASE (cc) 1994-2008 Study reference: Batista E., Lopes A., & Alves A. 2020. A review of Botryosphaeriaceae species on forest hosts in Portugal. European Journal of Forest Research, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S26085] [ The following blocks are input data for analysis step 26378 ] BEGIN TAXA; TITLE TaxaForAnalysisStep26378; DIMENSIONS NTAX=27; TAXLABELS CAA862 CAA865 CAA870 CAA875 CAA890 CAA891 CAA892 CAA903 Diplodia_africana_CBS120835T Diplodia_corticola_CAA499 Diplodia_corticola_CBS112546 Diplodia_corticola_CBS112549T Diplodia_corticola_CDFA519 Diplodia_insularis_CBS140350T Diplodia_intermedia_CAA147 Diplodia_mutila_CAA507 Diplodia_mutila_CBS136014T Diplodia_mutila_CBS230_30 Diplodia_pseudoseriata_CBS124906T Diplodia_pyri_CBS121862T Diplodia_quercivora_CBS133852T Diplodia_rosacearum_CBS141915T Diplodia_sapinea_CBS393_84T Diplodia_scrobiculata_CBS113423 Diplodia_seriata_CBS112555T Diplodia_subglobosa_CBS124132 Neofusicoccum_parvum_CMW9081T ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M54158] TITLE Diplodia_ITS_TEF; LINK TAXA = TaxaForAnalysisStep26378; DIMENSIONS NCHAR=751; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] CAA862 AGCGAGAGCTCGTTACCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TC-GCCGCGAGGGGAGGCCCTGAAAAGGGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATACAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--GGTGCTG---CTGCGCACAG---------CCCGTCTTATC-ATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTGCGACCGGCGTCAGGCCGACACGC-CCC-TCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC CAA865 AGCGAGAGCTCGTTACCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TC-GCCGCGAGGGGAGGCCCTGAAAAGGGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATACAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--GGTGCTG---CTGCGCACAG---------CCCGTCTTATC-ATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTGCGACCGGCGTCAGGCCGACACGC-CCC-TCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC CAA870 AGCGAGAGCTCGTTACCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TC-GCCGCGAGGGGAGGCCCTGAAAAGGGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATACAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--GGTGCTG---CTGCGCACAG---------CCCGTCTTATC-ATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTGCGACCGGCGTCAGGCCGACACGC-CCC-TCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC CAA875 AGCGAGAGCTCGTTACCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TC-GCCGCGAGGGGAGGCCCTGAAAAGGGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATACAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--GGTGCTG---CTGCGCACAG---------CCCGTCTTATC-ATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTGCGACCGGCGTCAGGCCGACACGC-CCC-TCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC CAA890 GGCTTCGGCTCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TTTGCCGCGAGG--AGCCAC-----AA----CTTCTC----GCGCGCTTTCCGCCAGAGGACCTTCAAACTCCAGTCAGTGAACGTCGACGTCTGATAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--ACAGC--------C-CAC----------------CTTAAC-GCT----TGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGGTTTTTT-GCGACCGGCGTCAGGCCGATGCGC-CCC-TCACTAGCGAGAAACACCCCGACCACTCATGTGCTCTCGTACGACCAAAGGCTAACGCACGCCACAATAGGAAGCCGCCGAGCTC CAA891 GGCTTCGGCCCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TT-GCCGCGTGG--AGGCCCTCAAAAG----CCCCCCC---GCGCGCTT-CCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGAAAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGTGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--AGTGCTG---CTGC-TGCTGCTGC---------GCTTATCTGCCGCCGTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGG-TTTTT-GCGACCGGTGTGAGGCCGATGCGC-CCCCTCACTAGCGAAAAATGCCCCGACCACTCATGTGCTCTCGTACGACCACAGGCTAACGCGCGCCACAACAGGAAGCCGCTGAGCTC CAA892 GGCTTCGGCTCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TTTGCCGCGAGG--AGGCCCTCGCGGG----CCCCCC---CGCGCGCTTTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--ACAGC--------C-CAC----------------CTTATC-GCT----CGGTGAGGGGCATTTTTCGTGGTGGGGGTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGGTTTTTT-GCGACCGGCGTCAGGCCGATGCGC-CCC-TCACTAGCGAGCAATGCCCCGACCACTCATGTGCTCTCGTGCGACCACAGGCTAACGCACGCCACAACAGGAAGCCGCCGAGCTC CAA903 GGCTTCGGCTCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TTTGCCGCGAGG--AGGCCCTCGCGGG----CCCCCC---CGCGCGCTTTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--ACAGC--------C-CAC----------------CTTATC-GCT----CGGTGAGGGGCATTTTTCGTGGTGGGGGTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGGTTTTTT-GCGACCGGCGTCAGGCCGATGCGC-CCC-TCACTAGCGAGCAATGCCCCGACCACTCATGTGCTCTCGTGCGACCACAGGCTAACGCACGCCACAACAGGAAGCCGCCGAGCTC Diplodia_africana_CBS120835T AGCTTCGGCTCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TT-GACGCGCGG--AGGCCCTCAAAAG----CCCCCCCC--GCGCGCTT-CCGCCAGAGGACCTTCAAACTCCAGTCAGTGAACGTCGACGTCTGAAAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--AGTGCTG---CTGC-TGC---------------GCTTATCTGCCGCCTTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGG-TTTTT-GCGACCGGTGTGAGGCCGATGCGC-CCCCTCGCTAGCGAAAAATGCCCCGACCACTCATGTGCTCTCGTACGACCACAGGCTAACGCGCGCCACAACAGGAAGCCGCTGAGCTC Diplodia_corticola_CAA499 AGCGAGAGCTCGTTACCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TC-GCCGCGAGGGGAGGCCCTGAAAAGGGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATACAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--GGTGCTG---CTGCGCACAG---------CCCGTCTTATC-ATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTGCGACCGGCGTCAGGCCGACACGC-CCC-TCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC Diplodia_corticola_CBS112546 AGCGAGAGCTCGTTACCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TC-GCCGCGAGGGGAGGCCCTGAAAAGGGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATACAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--GGTGCTG---CTGCGCACAG---------CCCGTCTTATC-ATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTGCGACCGGCGTCAGGCCGACACGC-CCC-TCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC Diplodia_corticola_CBS112549T AGCGAGAGCTCGTTACCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TC-GCCGCGAGGGGAGGCCCTGAAAAGGGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATACAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--GGTGCTG---CTGCGCACAG---------CCCGTCTTATC-ATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTGCGACCGGCGTCAGGCCGACACGC-CCC-TCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC Diplodia_corticola_CDFA519 AGCGAGAGCTCGTTACCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TC-GCCGCGAGGGGAGGCCCTGAAAAGGGCCCGCCCCCCTCGCGCGCCCTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATACAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTCCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGCTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--GGTGCTG---CTGCGCACAG---------CCCGTCTTATC-ATCGCGCTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTTTGCGACCGGCGTCAGGCCGACACGC-CCC-TCACTAGCGAGAAATGCCCTGACCACTCAGGTGCTCTCGTATGACCACAAGCTAACGCACGCCACTACAGGAAGCCGCTGAGCTC Diplodia_insularis_CBS140350T GGCTTCGGCTCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TTTGCCGCGAGG--AGCCAC-----AA----CTTCTC----GCGCGCTTTCCGCCAGAGGACCTTCAAACTCCAGTCAGTGAACGTCGACGTCTGATAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--ACAGC--------C-CAC----------------CTTAAC-GCT----TGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGGTTTTTT-GCGACCGGCGTCAGGCCGATGCGC-CCC-TCACTAGCGAGAAACACCCCGACCACTCATGTGCTCTCGTACGACCAAAGGCTAACGCACGCCACAATAGGAAGCCGCCGAGCTC Diplodia_intermedia_CAA147 GGCTTCGGCTCGA-ATCTCCCACCCCTTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TTTGCCGCGAGG--AGGCCCTCGCGGG----CCCCCCC---GCGCGCTTTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--ACAGT--------C-CAC----------------CTTATC-GCT----CGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGGTTTTTT-GCGACCGGCGTCAGGCCGATGCGC-CCC-TCACTAGCGAGCAATGCCCCGACCACTCATGTGCTCTCGTGCGACCGCAGGCTAACGCACGCCACAACAGGAAGCCGCCGAGCTC Diplodia_mutila_CAA507 GGCTTCGGCCCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TT-GCCGCGTGG--AGGCCCTCAAAAG----CCCCCCC---GCGCGCTT-CCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGAAAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGTGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--AGTGCTG---CTGC-TGCTGCTGCTGCTGCTGCGCTTATCTGCCGCCGTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGG-TTTTT-GCGACCGGTGTGAGGCCGATGCGC-CCCCTCACTAGCGAAAAATGCCCCGACCACTCATGTGCTCTCGTACGACCACAGGCTAACGCGCGCCACAACAGGAAGCCGCTGAGCTC Diplodia_mutila_CBS136014T GGCTTCGGCCCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TT-GCCGCGTGG--AGGCCCTCAAAAG----CCCCCCC---GCGCGCTT-CCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGAAAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGTGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--AGTGCTG---CTGC-TGCTGCTGCTGCTGCTGCGCTTATCTGCCGCCGTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGG-TTTTT-GCGACCGGTGTGAGGCCGATGCGC-CCCCTCACTAGCGAAAAATGCCCCGACCACTCATGTGCTCTCGTACGACCACAGGCTAACGCGCGCCACAACAGGAAGCCGCTGAGCTC Diplodia_mutila_CBS230_30 GGCTTCGGCCCCA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TT-GCCGCGTGG--AGGCCCTCAAAAG----CCCCCCC---GCGCGCTT-CCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGAAAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGTGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--AGTGCTG---CTGC-TGCTGCTGCTGCTGCTGCGCTTATCTGCCGCCGTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGG-TTTTT-GCGACCGGTGTGAGGCCGATGCGC-CCCCTCACTAGCGAAAAATGCCCCGACCACTCATGTGCTCTCGTACGACCACAGGCTAACGCGCGCCACAACAGGAAGCCGCTGAGCTC Diplodia_pseudoseriata_CBS124906T GGCTTCGGCTCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TTTGCCGCGAGG--AGCCAC-----AA----CTTCTC----GCGCGCTTTCCGCCAGAGGACCTTCAAACTCCAGTCAGTGAACGTCGACGTCTGATAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGTGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--ACAGC--------C-CAC----------------CTTAAC-GCT----TGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGGTTTTTT-GCGACCGGCGTCAGGCCGATGCGC-CCC-TCACTAGCGAGAAATACCCCGACCACTCATGTGCTCTCGTACGACCAAAGGCTAACGCACGCCACAATAGGAAGCCGCCGAGCTC Diplodia_pyri_CBS121862T GGCTTCGGCCCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TT-GCCGCGTGG--AGGCCCTCAAAAG----CCCCCCC---GCGCGCTT-CCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGAAAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGTGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--AGTGCTG---CTGC-TGCTGCTGC---------GCTTATCTGCCGCCGTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGG-TTTTT-GCGACCGGTGTGAGGCCGATGCGC-CCCCTCACTAGCGAAAAATGCCCCGACCACTCATGTGCTCTCGTACGACCACAGGCTAACGCGCGCCACAACAGGAAGCCGCTGAGCTC Diplodia_quercivora_CBS133852T AGCGAAAGCTCGTTACCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TC-GCCGCGAGGA-AGGCCCTTAAATGGGGCCCCCCCCCTCGCGCGCC-TCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATACAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTCAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--GGTGCTG---CTGCGCACAC---------CCCGTCTCCTC-GTC---CTGGTGAGGGGCATTTTGCGTGGTGGGGTTTGGCCCGCGCTAAGCCTCGTCTGCGCTCGGCAAACTGGCCGCACTCGCTTTTTT-GCGACCGGCGTCAGGCCGATGCGC-CCC-TCACTAGCGAGAAATGCCTTGACCACTCATGTGCTCTCGTGTGACCATAAGCTAACGCACGCCACTACAGGAAGCCGCTGAACTC Diplodia_rosacearum_CBS141915T GGCTTCGGCTCGA-ATCTCCCACCCCTTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TTTGCCGCGAGG--AGGCCCTCGCGGG----CCCCCCC--CGCGCGCTTTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--ACAGC--------C-CAC----------------CTTATC-GCC----CGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGGTTTTTT-GCGACCGGCGTCAGGCCGATGCGC-CCC-TCGCTAGCGAGCAATGCCCCGACCACTCATGTGCTCTCGTGCGACCACAGGCTAACGCACGCCACAACAGGAAGCCGCCGAGCTC Diplodia_sapinea_CBS393_84T GGCTTCGGCTCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TTTGCCGCGAGG--AGGCCCTCGCGGG----CCCCCC---CGCGCGCTTTCCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--ACAGC--------C-CAC----------------CTTATC-GCT----CGGTGAGGGGCATTTTTCGTGGTGGGGGTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGGTTTTTT-GCGACCGGCGTCAGGCCGATGCGC-CCC-TCACTAGCGAGCAATGCCCCGACCACTCATGTGCTCTCGTGCGACCACAGGCTAACGCACGCCACAACAGGAAGCCGCCGAGCTC Diplodia_scrobiculata_CBS113423 GGCTTCGGCTCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TTTGCCGCGAGG--AGGCCCTCGCGGG----CCCCCCA--CGCGCGCTTTCCGCCAGAGGACCCTCAAACTCCAGTCAGTAAACGTCGACGTCTGATAAACTAAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--ACAGC--------C-CAC----------------CTTATC-GCT----CGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGGGTTTTT-GCGACCGGCGGCAGGCCGATGCGC-CCC-TCACTAGCGAGCAACGCCCCGACCACTCATGTGCTCTCGTGCGACCACAGGCTAACGCACGCCACAACAGGAAGCCGCCGAGCTC Diplodia_seriata_CBS112555T GGCTTCGGCTCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TTTGCCGCGAGG--AGGCCCTCGCGGG----CCCCCC---CGCGCGCTTTCTGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGATAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--ACAGC--------C-CAC----------------CTTATC-GCT----CGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAACCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGGTTTTTT-GCGACCGGCGTCTGGCCGATGCGC-CCC-TCACTAGCGAGCAATGCCCCGACCACTCATGTGCTCTCGTACGACCACAGGCTAACGCACGCCACAACAGGAAGCCGCCGAGCTC Diplodia_subglobosa_CBS124132 GGCTTCGGCTCGA-ATCTCCCACCC-TTTGTGAACATACCTCTGTTGCTTTGGCGGCTC----TT-GCCGCGTGG--AGGCCCTCAAAAG----CCCCCCCCCCGCGCGCTT-CCGCCAGAGGACCTTCAAACTCCAGTCAGTAAACGTCGACGTCTGAAGAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAAAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACAACCCTCAAGCTCTGCTTGGTATTGGGCGCCGTCCTCTCTGCGGACGCGCCTTAAAGACCTCGGCGGTGGCTGTTCAGCCCTCAAGCGTAGTAGAATACACCTCGCTTTGGAGCGGTTGGCGTCGCCCGCCGGACGAACCTTCTGAACT-TTTCTCAAGGTTTGC--AGTGCTG---CTGC-TGC---------------GCTTATCTGCCGCCGTGGTGAGGGGCATTTTTCGTGGTGGGGTTTGGCCCGCGCTAAATCTCGTCTGAGCTCGGCAAACTGGCCGCACTTGG-TTTTT-GCGACCGGTGTGAGGCCGATGCGC-CCCCTCACTAGCGAAAAATGCCCCGACCACTCATGTGCTCTCGTACGACCACAGGCTAACGCGCGCCCCAACAGGAAGCCGCTGAGCTC Neofusicoccum_parvum_CMW9081T AGCTCCGGCTCGA-CTCTCCCACCC-TATGTGTACCTACCTCTGTTGCTTTGGCGGGCCGCGGTCCTCCGCACCG--GCGCCCTTCGGGGGG--CTGGCCA-----GCGC---CCGCCAGAGGACCATAAAACTCCAGTCAGTGAACTTCGCAGTCTGAAAAAC-AAGTTAATAAACTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCTCTGCTTGGTATTGGGCCCCGTCCTCC--ACGGACGCGCCTTAAAGACCTCGGCGGTGGC-GTCTTGCC-TCAAGCGTAGTAGAAAACACCTCGCTTTGGAGCGCACGGCGTCGCCCGCCGGACGAACCTT-TGAATTATTTCTCAAGGTTTGCCAGGTGCTGGGTTCCCGCACTCA-------ATTTGCCTTATC-GCT---TCGGTGAGGGGCATTTTG-GTGGTGGGG-TTGGCCCGCGCTAAGCCTCGTTTGGGCTCGGCAAAATGTCCGCATCTGGTTTTTTTGCGACCGGCGTGCGACCGAAGCGCGCCCCTCGCCAG------ACAC----GCCACGCATGTGC--------GACCAGACGCTAACA---GCCATCCCAGGAAGCCGCCGAGCTC ; END; [ The following blocks are output data for analysis step 26378 ] BEGIN TREES; TITLE Diplodia_ITS_TEF; LINK TAXA = TaxaForAnalysisStep26378; TREE Imported_tree_1 = [&R] ((((((((((CAA903,Diplodia_sapinea_CBS393_84T)0.2620,CAA892)0.6490,Diplodia_intermedia_CAA147)0.4170,Diplodia_rosacearum_CBS141915T)0.2430,Diplodia_scrobiculata_CBS113423)0.5560,Diplodia_seriata_CBS112555T)0.5170,(Diplodia_pseudoseriata_CBS124906T,(CAA890,Diplodia_insularis_CBS140350T)0.8880)0.9980)0.8280,(Diplodia_quercivora_CBS133852T,(CAA870,((CAA862,CAA865)0.0930,(CAA875,(Diplodia_corticola_CAA499,(Diplodia_corticola_CBS112546,(Diplodia_corticola_CBS112549T,Diplodia_corticola_CDFA519)0.1030)0.0270)0.0150)0.0090)0.0650)1.0000)0.9960)0.5260,(Diplodia_subglobosa_CBS124132,(CAA891,(Diplodia_mutila_CAA507,(Diplodia_mutila_CBS230_30,(Diplodia_mutila_CBS136014T,Diplodia_pyri_CBS121862T)0.0820)0.1040)0.1630)0.9410)0.5700)0.2960,Diplodia_africana_CBS120835T,Neofusicoccum_parvum_CMW9081T); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr123247] END;